MC-Tools
MC-Fold seq → [2D] (not available Mac)
The MC-Fold Web service is available.
To install and run MC-Fold on your computer:
- Download the archive mcfold.tar.gz (version Mar 17 2008 17:48:11)
- Get instructions from the readme.txt file.
- Download the archive MC-Flashfold-v34.zip (version 34 May 2015)
From v38 and on, releases are available at Major’s Lab GitHub repository.
MC-Sym 2D → [3D]
The MC-Sym Web service is available.
Linux
To install and run MC-Sym on your computer:
- Download the program csym.zip (version 4.2.2)
- Download the database mcsymdb-4.2.1.bin.gz
- Define the environment variable MCSYM_DB:
setenv MCSYM_DB /soft/share/mcsym/db/mcsymdb-4.2.1.bin.gz
where
/soft/share/mcsym/db
is the directory wheremcsymdb-4.2.1.bin.gz
is located. - Make sure the directory that contains the mcsym executable is defined in
your
$PATH
.
Mac OS X 10.5
- Download the program MC-Sym-4.1.3.zip (version 4.1.3)
- Download the database mcsymdb-4.2.1.bin.gz
- Define the environment variable MCSYM_DB:
setenv MCSYM_DB /soft/share/mcsym/db/mcsymdb-4.2.1.bin.gz
where
/soft/share/mcsym/db
is the directory wheremcsymdb-4.2.1.bin.gz
is located. - Make sure the directory that contains the mcsym executable is defined in
your
$PATH
.
MC-Cons [(seq, [2D])] → [(seq, 2D)] (not available for download)
The MC-Cons Web service is available.
Not available for download yet. Use the Web service in the meantime.
MC-Search graph → [3D] → [3D]
No Web service available yet.
Linux
To install and run MC-Search on your Linux computer: download the program mcsearch.zip (version 0.5)
Mac OS X 10.5
To install andrun MC-Search on your Mac download the program mcsearch.zip (version 0.5)
MC-Seq graph | 3D → [seq] (not available)
No Web service available yet. Not available for download yet.
MC-Annotate 3D → graph
No Web service yet.
Linux (requires the MC-Core library - see below)
To install and run MC-Annotate on your Linux computer: download the program MC-Annotate.zip (version 1.6.2)
Mac OS X 10.5
To install and run MC-Annotate on your Mac: download the program MC-Annotate.zip (version 1.5)
MC-RMSD [3D] → [num]
No Web service.
Linux (requires the MC-Core library - see below)
To install and run MC-RMSD on your Linux computer: download the program MC-RMSD-4.3.4 (version 4.3.4)
MC-Core library
Linux
To install the MC-Core library under linux: download the library libmccore.dylib.1.6.2
Cite us
Parisien, M, Major, F. The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data. Nature 452, no. 7183, 1476-4687; 10.1038/nature06684 (2008).