miRBooking-scan explore miRBooking 2.0 predictions

The miRBooking-scan Web service provides an exploratory view of reference microtargetomes computed by miRBooking 2.0.

Not interested in K562? Choose a different cell line.

K562

Erythroleukemia cell line derived from a derived from a 53-year-old female chronic myelogenous leukemia patient in blast crisis.

Here's how you can reproduce this:

mirbooking --supplementary-scores=data/scores-3mer --relative-cutoff=0 --seed-scores=data/scores-7mer-3mismatch-centered --mirnas=data/mature.fa --targets=data/gencode.v24.transcripts.fa --cutoff=100 --tolerance=1e-8 --3prime-footprint=7 --5prime-footprint=9 --supplementary-model=yan-et-al-2018 --input=ENCSR612NLL.tsv

Note that only interactions expected to reach at least 100 pM under ideal conditions were considered in this model.
Occupant target_name miRNA Name Bound Fraction Efficiency
MIMAT0000445::ENST00000350608.7 DDT hsa-miR-126-3p 86.12% 86.39%
MIMAT0000445::ENST00000547294.5 CORO1C hsa-miR-126-3p 85.55% 85.82%
MIMAT0000445::ENST00000535589.3 ACTR3 hsa-miR-126-3p 85.41% 85.68%
MIMAT0000445::ENST00000513231.5 UBE2K hsa-miR-126-3p 85.1% 85.39%
MIMAT0000445::ENST00000602300.5 HNRNPDL hsa-miR-126-3p 84.8% 85.07%
MIMAT0000445::ENST00000293860.5 POLR3K hsa-miR-126-3p 84.56% 84.83%
MIMAT0000445::ENST00000614830.4 NOP16 hsa-miR-126-3p 84.54% 84.8%
MIMAT0000445::ENST00000488633.1 CIAO1 hsa-miR-126-3p 84.48% 84.74%
MIMAT0000445::ENST00000392367.4 RAN hsa-miR-126-3p 84.26% 84.53%
MIMAT0000445::ENST00000443213.5 SRSF7 hsa-miR-126-3p 84.2% 84.46%
MIMAT0000445::ENST00000393868.6 SUCLG1 hsa-miR-126-3p 83.76% 84.03%
MIMAT0000445::ENST00000417647.6 IK hsa-miR-126-3p 83.66% 83.95%
MIMAT0000445::ENST00000566316.5 ATF7IP2 hsa-miR-126-3p 83.4% 83.67%
MIMAT0000445::ENST00000270221.10 EMP3 hsa-miR-126-3p 83.34% 83.61%
MIMAT0000445::ENST00000406555.7 EGFL7 hsa-miR-126-3p 83.21% 83.5%
MIMAT0000445::ENST00000367334.9 TMEM9 hsa-miR-126-3p 83.11% 83.4%
MIMAT0000445::ENST00000505059.6 MRPL36 hsa-miR-126-3p 83.1% 83.42%
MIMAT0000445::ENST00000449683.5 ATP5J2 hsa-miR-126-3p 82.91% 83.23%
MIMAT0000445::ENST00000336452.11 EIF5A hsa-miR-126-3p 82.78% 83.08%
MIMAT0000445::ENST00000497539.5 SNRNP200 hsa-miR-126-3p 82.76% 83.03%
MIMAT0000445::ENST00000480992.5 NOP56 hsa-miR-126-3p 82.48% 82.8%
MIMAT0000445::ENST00000526586.6 RPS2 hsa-miR-126-3p 82.45% 82.77%
MIMAT0000445::ENST00000261401.7 CORO1C hsa-miR-126-3p 82.37% 82.64%
MIMAT0000445::ENST00000261413.9 MRPS27 hsa-miR-126-3p 82.29% 82.61%
MIMAT0000445::ENST00000458332.1 RPS2P46 hsa-miR-126-3p 82.09% 82.41%
MIMAT0000445::ENST00000371698.3 EGFL7 hsa-miR-126-3p 81.95% 82.23%
MIMAT0000445::ENST00000275603.8 CCT6A hsa-miR-126-3p 81.8% 82.07%
MIMAT0000445::ENST00000246868.6 SBDS hsa-miR-126-3p 81.69% 82.01%
MIMAT0000445::ENST00000415995.5 UQCRC1 hsa-miR-126-3p 81.2% 81.52%
MIMAT0000445::ENST00000307839.9 RPL15 hsa-miR-126-3p 81.14% 81.39%
MIMAT0000445::ENST00000351193.6 NMD3 hsa-miR-126-3p 80.7% 81.07%
MIMAT0000445::ENST00000517625.5 SKP1 hsa-miR-126-3p 80.42% 80.78%
MIMAT0000445::ENST00000521216.5 SKP1 hsa-miR-126-3p 80.41% 80.77%
MIMAT0000445::ENST00000504789.5 SUB1 hsa-miR-126-3p 80.4% 80.77%
MIMAT0000445::ENST00000243563.7 SNRPA hsa-miR-126-3p 79.8% 80.05%
MIMAT0000445::ENST00000369550.9 DKC1 hsa-miR-126-3p 79.74% 80.05%
MIMAT0000445::ENST00000262033.10 PTGES3 hsa-miR-126-3p 79.7% 79.96%
MIMAT0000445::ENST00000425248.5 COPG2 hsa-miR-126-3p 79.14% 79.42%
MIMAT0000445::ENST00000263168.3 CAPZA1 hsa-miR-126-3p 78.85% 79.21%
MIMAT0000445::ENST00000342192.8 UBE2L3 hsa-miR-126-3p 78.58% 78.94%
MIMAT0000445::ENST00000323853.9 SNRNP200 hsa-miR-126-3p 78.22% 78.48%
MIMAT0000445::ENST00000408918.8 CCNL2 hsa-miR-126-3p 77.83% 78.14%
MIMAT0000445::ENST00000361611.10 PSMB5 hsa-miR-126-3p 77.5% 77.85%
MIMAT0000445::ENST00000265056.11 MCM2 hsa-miR-126-3p 77.41% 77.76%
MIMAT0000445::ENST00000359995.9 SRSF2 hsa-miR-126-3p 77.05% 77.4%
MIMAT0000445::ENST00000476175.6 PRMT5 hsa-miR-126-3p 75.97% 77.49%
MIMAT0000445::ENST00000397441.6 PRMT5 hsa-miR-126-3p 75.32% 76.81%
MIMAT0000445::ENST00000412532.6 SLC1A5 hsa-miR-126-3p 73.65% 73.93%
MIMAT0000445::ENST00000269122.7 CLTC hsa-miR-126-3p 69.45% 69.72%
MIMAT0000445::ENST00000372014.4 MRPL14 hsa-miR-126-3p 61.49% 71.22%

Download this view in TSV:

curl -H Accept:text/tab-separated-values 'https://major.iric.ca/~poirigui/cgi-bin/mirbooking-scan/app.cgi/cell-lines/ENCSR612NLL'

Cite us

miRBooking 1.0: Weill N, Lisi V, Scott N, Dallaire P, Pelloux J, Major F. MirBooking simulates the stoichiometric mode of action of microRNAs, Nucleic Acids Res. 2015 43(14):6730-8.

miRBooking 2.0: Publication upcoming!