miRBooking1 simulates the stochiometric mode of action of miRNAs.

This page hosts the releases of the C implementation as well as some general information on running the program and interpreting its output.

To compile and install miRBooking, you’ll need Meson, Ninja and the development file of GLib suitable for your platform.

It’s also possible to write programs that consumes its C API as-is or via GObject Introspection using Python, JavaScript and Vala. Please be aware that the API and ABI are not yet stablized.

The miRBooking-scan Web service is now available and propose a few cell lines.

Releases

  • mirbooking-1.2.0.tar.xz (sha256)

    This release backport some changes from the trunk and stabilize the C/Python API.

    • Provide and reorganize a more detailed output with common names and vacancy.
    • Add Pandas-based helper to the Python API to manipulate the output as a dataframe.
    • Drop the mirbooking-aggregate tool considering that we now have a Pandas-friendly API.
  • mirbooking-1.1.0.tar.xz (sha256)

    Few memory and CPU time optimizations and add --seed-index and --seed-offset options.

  • mirbooking-1.0.0.tar.xz (sha256)

    Initial release with a identical reimplementation of the Java version.

Supplementary material

  • score table (sha256)
    This is passed via the --score-table flag and provides hybridization probabilities of all heptamer duplexes. It also possible to generate a custom table.
  • C API documentation

Cite us

Weill N, Lisi V, Scott N, Dallaire P, Pelloux J, Major F. MirBooking simulates the stoichiometric mode of action of microRNAs, Nucleic Acids Res. 2015 43(14):6730-8.

  1. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4538818/