miRBooking-scan explore miRBooking predictions

The miRBooking-scan Web service provides an exploratory view of reference microtargetomes computed by miRBooking.

Not interested in HepG2? Choose a different cell line.

HepG2 ENCSR888GEN from ENCODE

Here's how you can reproduce this:

mirbooking --seed-scores=data/scores-7mer-3mismatch-centered --5prime-footprint=9 --supplementary-scores=data/scores-3mer --cutoff=200 --relative-cutoff=0 --mirnas=data/mature.fa --3prime-footprint=7 --targets=data/gencode.v24.transcripts.fa --supplementary-model=yan-et-al-2018 --tolerance=1e-8 --input=ENCSR888GEN.tsv

Note that only interactions expected to reach at least 200 pM under ideal conditions were considered in this model.
Occupant target_name miRNA Name Bound Fraction Efficiency
MIMAT0000076::ENST00000568588.5 RPL4 hsa-miR-21-5p 46.0% 46.47%
MIMAT0000076::ENST00000216037.10 XBP1 hsa-miR-21-5p 45.98% 46.45%
MIMAT0000076::ENST00000358888.7 RPL41 hsa-miR-21-5p 36.27% 36.83%
MIMAT0000076::ENST00000223641.4 SEC61B hsa-miR-21-5p 36.26% 36.83%
MIMAT0000076::ENST00000504387.5 NEDD9 hsa-miR-21-5p 36.08% 36.64%
MIMAT0000076::ENST00000328848.5 NOP10 hsa-miR-21-5p 34.82% 35.39%
MIMAT0000076::ENST00000398881.3 TOMM6 hsa-miR-21-5p 32.03% 32.63%
MIMAT0000076::ENST00000554866.5 SERPINA5 hsa-miR-21-5p 31.67% 32.27%
MIMAT0000076::ENST00000414273.1 MTCO1P12 hsa-miR-21-5p 29.02% 29.65%
MIMAT0000076::ENST00000588802.5 APOC1 hsa-miR-21-5p 29.02% 29.65%
MIMAT0000076::ENST00000503937.5 SEC31A hsa-miR-21-5p 29.02% 29.64%
MIMAT0000076::ENST00000503026.5 CCT5 hsa-miR-21-5p 29.02% 29.64%
MIMAT0000076::ENST00000348811.6 WSB1 hsa-miR-21-5p 29.01% 29.64%
MIMAT0000076::ENST00000462256.5 DDX39B hsa-miR-21-5p 28.22% 36.6%
MIMAT0000076::ENST00000372014.4 MRPL14 hsa-miR-21-5p 26.18% 26.83%
MIMAT0000076::ENST00000395144.6 HYAL1 hsa-miR-21-5p 26.17% 26.82%
MIMAT0000076::ENST00000405219.7 XBP1 hsa-miR-21-5p 25.84% 46.37%
MIMAT0000076::ENST00000546463.5 PCBP2 hsa-miR-21-5p 24.67% 29.54%
MIMAT0000076::ENST00000287667.11 NOMO1 hsa-miR-21-5p 24.08% 36.44%
MIMAT0000076::ENST00000508775.5 RNASET2 hsa-miR-21-5p 22.65% 23.34%
MIMAT0000076::ENST00000306368.8 RNF181 hsa-miR-21-5p 22.65% 23.33%
MIMAT0000076::ENST00000600880.5 RPL37A hsa-miR-21-5p 22.64% 23.34%
MIMAT0000076::ENST00000577982.1 APOH hsa-miR-21-5p 22.1% 22.79%
MIMAT0000076::ENST00000223642.2 C5 hsa-miR-21-5p 21.44% 45.96%
MIMAT0000076::ENST00000585132.5 NCOA4 hsa-miR-21-5p 20.83% 29.32%
MIMAT0000076::ENST00000426155.6 SNX3 hsa-miR-21-5p 20.5% 21.2%
MIMAT0000076::ENST00000283871.9 HGD hsa-miR-21-5p 19.66% 29.59%
MIMAT0000076::ENST00000442468.1 F2 hsa-miR-21-5p 19.65% 29.58%
MIMAT0000076::ENST00000582401.5 TXNIP hsa-miR-21-5p 19.53% 35.92%
MIMAT0000076::ENST00000304414.11 ARL6IP1 hsa-miR-21-5p 18.54% 36.3%
MIMAT0000076::ENST00000296370.3 S100P hsa-miR-21-5p 18.31% 49.74%
MIMAT0000076::ENST00000361789.2 MT-CYB hsa-miR-21-5p 17.8% 57.35%
MIMAT0000076::ENST00000615790.4 PEG10 hsa-miR-21-5p 17.02% 45.62%
MIMAT0000076::ENST00000262056.13 EIF4B hsa-miR-21-5p 16.2% 16.94%
MIMAT0000076::ENST00000425762.2 PSMB5 hsa-miR-21-5p 16.2% 16.94%
MIMAT0000076::ENST00000294785.9 NCSTN hsa-miR-21-5p 16.2% 16.94%
MIMAT0000076::ENST00000376588.3 PSAT1 hsa-miR-21-5p 16.2% 16.94%
MIMAT0000076::ENST00000247461.8 CANX hsa-miR-21-5p 16.2% 16.94%
MIMAT0000076::ENST00000370873.8 PSMA7 hsa-miR-21-5p 16.12% 16.86%
MIMAT0000076::ENST00000473132.1 TOMM20 hsa-miR-21-5p 15.99% 16.73%
MIMAT0000076::ENST00000561424.5 B2M hsa-miR-21-5p 14.95% 26.79%
MIMAT0000076::ENST00000409320.7 RPL31 hsa-miR-21-5p 14.85% 49.25%
MIMAT0000076::ENST00000592535.5 APOC1 hsa-miR-21-5p 14.84% 29.62%
MIMAT0000076::ENST00000407540.7 MATN3 hsa-miR-21-5p 14.63% 21.15%
MIMAT0000076::ENST00000456292.5 RPL31 hsa-miR-21-5p 13.94% 49.77%
MIMAT0000076::ENST00000295688.7 CCT3 hsa-miR-21-5p 13.94% 14.7%
MIMAT0000076::ENST00000411630.6 DANCR hsa-miR-21-5p 13.85% 36.54%
MIMAT0000076::ENST00000217456.2 APMAP hsa-miR-21-5p 13.26% 16.92%
MIMAT0000076::ENST00000379565.7 RPS6KA3 hsa-miR-21-5p 13.26% 35.39%
MIMAT0000076::ENST00000262225.7 TMED2 hsa-miR-21-5p 13.18% 21.18%

Download this view in TSV:

curl -H Accept:text/tab-separated-values 'http://major.iric.ca/~poirigui/cgi-bin/mirbooking-scan/app.cgi/cell-lines/ENCSR888GEN'

Cite us

Weill N, Lisi V, Scott N, Dallaire P, Pelloux J, Major F. MirBooking simulates the stoichiometric mode of action of microRNAs, Nucleic Acids Res. 2015 43(14):6730-8.