miRBooking-scan explore miRBooking predictions

The miRBooking-scan Web service provides an exploratory view of reference microtargetomes computed by miRBooking.

Not interested in A549? Choose a different cell line.

A549 ENCSR809EFN from ENCODE

Here's how you can reproduce this:

mirbooking --5prime-footprint=9 --supplementary-scores=data/scores-3mer --3prime-footprint=7 --tolerance=1e-8 --targets=data/gencode.v24.transcripts.fa --supplementary-model=yan-et-al-2018 --relative-cutoff=0 --cutoff=200 --seed-scores=data/scores-7mer-3mismatch-centered --mirnas=data/mature.fa --input=ENCSR809EFN.tsv

Note that only interactions expected to reach at least 200 pM under ideal conditions were considered in this model.
Occupant target_name miRNA Name Bound Fraction Efficiency
MIMAT0000076::ENST00000622633.4 LITAF hsa-miR-21-5p 43.97% 44.55%
MIMAT0000076::ENST00000317534.5 MRPS24 hsa-miR-21-5p 40.72% 41.33%
MIMAT0000076::ENST00000439527.6 UBA2 hsa-miR-21-5p 40.69% 41.31%
MIMAT0000076::ENST00000460124.5 AKR1C2 hsa-miR-21-5p 32.35% 51.93%
MIMAT0000076::ENST00000249289.4 ATP6V1F hsa-miR-21-5p 31.52% 32.23%
MIMAT0000076::ENST00000223641.4 SEC61B hsa-miR-21-5p 31.51% 32.23%
MIMAT0000076::ENST00000438607.2 TMA7 hsa-miR-21-5p 31.5% 32.21%
MIMAT0000076::ENST00000341394.8 CAPRIN1 hsa-miR-21-5p 31.06% 42.99%
MIMAT0000076::ENST00000360943.9 UBE2Z hsa-miR-21-5p 30.91% 31.61%
MIMAT0000076::ENST00000328848.5 NOP10 hsa-miR-21-5p 30.14% 30.87%
MIMAT0000076::ENST00000469308.1 EIF1 hsa-miR-21-5p 28.5% 51.82%
MIMAT0000076::ENST00000393085.3 MTPN hsa-miR-21-5p 28.46% 33.3%
MIMAT0000076::ENST00000611563.1 RPS29 hsa-miR-21-5p 27.62% 28.37%
MIMAT0000076::ENST00000353245.7 YWHAZ hsa-miR-21-5p 25.06% 31.87%
MIMAT0000076::ENST00000395958.5 YWHAZ hsa-miR-21-5p 25.06% 31.86%
MIMAT0000076::ENST00000322030.12 SET hsa-miR-21-5p 24.87% 25.65%
MIMAT0000076::ENST00000620941.1 SRSF3 hsa-miR-21-5p 24.84% 25.62%
MIMAT0000076::ENST00000473786.5 CCT7 hsa-miR-21-5p 24.82% 25.6%
MIMAT0000076::ENST00000376281.8 HNRNPK hsa-miR-21-5p 24.81% 25.59%
MIMAT0000076::ENST00000254810.8 H3F3B hsa-miR-21-5p 24.77% 25.55%
MIMAT0000076::ENST00000354185.8 DDX21 hsa-miR-21-5p 24.63% 41.09%
MIMAT0000076::ENST00000548474.2 ATP5B hsa-miR-21-5p 24.45% 25.22%
MIMAT0000076::ENST00000178638.7 CA12 hsa-miR-21-5p 24.23% 25.29%
MIMAT0000076::ENST00000424390.1 PRDX1 hsa-miR-21-5p 24.15% 24.94%
MIMAT0000076::ENST00000344366.7 CA12 hsa-miR-21-5p 24.15% 24.93%
MIMAT0000076::ENST00000282561.3 GJA1 hsa-miR-21-5p 23.95% 29.57%
MIMAT0000076::ENST00000357903.7 APP hsa-miR-21-5p 22.26% 23.07%
MIMAT0000076::ENST00000368706.8 S100A16 hsa-miR-21-5p 21.74% 25.24%
MIMAT0000076::ENST00000396821.7 DDX17 hsa-miR-21-5p 21.73% 25.35%
MIMAT0000075::ENST00000503431.5 UCHL1 hsa-miR-20a-5p 21.14% 21.79%
MIMAT0000075::ENST00000436900.2 DAZAP2 hsa-miR-20a-5p 20.97% 21.62%
MIMAT0000076::ENST00000546463.5 PCBP2 hsa-miR-21-5p 20.97% 25.53%
MIMAT0000075::ENST00000396821.7 DDX17 hsa-miR-20a-5p 20.93% 21.43%
MIMAT0000075::ENST00000453448.1 KCMF1 hsa-miR-20a-5p 20.84% 21.34%
MIMAT0000075::ENST00000234301.2 COX7A2L hsa-miR-20a-5p 20.75% 21.25%
MIMAT0000075::ENST00000604262.5 OXA1L hsa-miR-20a-5p 20.74% 21.24%
MIMAT0000075::ENST00000346213.8 RAB5C hsa-miR-20a-5p 20.61% 21.24%
MIMAT0000075::ENST00000290541.6 PSMB4 hsa-miR-20a-5p 20.02% 20.5%
MIMAT0000076::ENST00000382581.4 MRFAP1 hsa-miR-21-5p 20.0% 31.91%
MIMAT0000075::ENST00000380191.8 GDI2 hsa-miR-20a-5p 19.77% 20.24%
MIMAT0000076::ENST00000588815.5 CAPNS1 hsa-miR-21-5p 19.59% 20.42%
MIMAT0000076::ENST00000396525.6 EIF4G2 hsa-miR-21-5p 19.47% 25.29%
MIMAT0000076::ENST00000616691.1 MALAT1 hsa-miR-21-5p 19.16% 20.0%
MIMAT0000076::ENST00000339600.5 NDUFA4 hsa-miR-21-5p 19.15% 19.99%
MIMAT0000076::ENST00000600880.5 RPL37A hsa-miR-21-5p 19.14% 19.99%
MIMAT0000076::ENST00000306368.8 RNF181 hsa-miR-21-5p 19.13% 19.97%
MIMAT0000076::ENST00000532444.5 EIF3M hsa-miR-21-5p 19.01% 19.85%
MIMAT0000076::ENST00000335508.10 SF3B1 hsa-miR-21-5p 18.76% 19.83%
MIMAT0000076::ENST00000357156.6 DYNLRB1 hsa-miR-21-5p 18.68% 19.52%
MIMAT0000076::ENST00000396394.6 PSMA1 hsa-miR-21-5p 18.65% 19.5%

Download this view in TSV:

curl -H Accept:text/tab-separated-values 'http://major.iric.ca/~poirigui/cgi-bin/mirbooking-scan/app.cgi/cell-lines/ENCSR809EFN'

Cite us

Weill N, Lisi V, Scott N, Dallaire P, Pelloux J, Major F. MirBooking simulates the stoichiometric mode of action of microRNAs, Nucleic Acids Res. 2015 43(14):6730-8.