miRBooking-scan explore miRBooking predictions

The miRBooking-scan Web service provides an exploratory view of reference microtargetomes computed by miRBooking.

Not interested in K562? Choose a different cell line.

K562

Here's how you can reproduce this:

mirbooking --seed-scores=data/scores-7mer-3mismatch-centered --supplementary-scores=data/scores-3mer --3prime-footprint=7 --5prime-footprint=9 --cutoff=200 --relative-cutoff=0 --supplementary-model=yan-et-al-2018 --tolerance=1e-8 --targets=data/gencode.v24.transcripts.fa --mirnas=data/mature.fa --input=ENCSR612NLL.tsv

Note that only interactions expected to reach at least 200 pM under ideal conditions were considered in this model.
Occupant target_name miRNA Name Bound Fraction Efficiency
MIMAT0000075::ENST00000234301.2 COX7A2L hsa-miR-20a-5p 33.71% 34.35%
MIMAT0000075::ENST00000331666.10 EIF3C hsa-miR-20a-5p 27.55% 28.16%
MIMAT0000075::ENST00000290541.6 PSMB4 hsa-miR-20a-5p 26.65% 27.16%
MIMAT0000075::ENST00000533540.5 HSPA8 hsa-miR-20a-5p 26.21% 26.71%
MIMAT0000075::ENST00000380191.8 GDI2 hsa-miR-20a-5p 25.81% 26.3%
MIMAT0000075::ENST00000340990.9 ADIPOR1 hsa-miR-20a-5p 25.74% 26.23%
MIMAT0000075::ENST00000447298.1 H19 hsa-miR-20a-5p 25.34% 25.82%
MIMAT0000075::ENST00000321331.11 HIGD1A hsa-miR-20a-5p 24.11% 24.65%
MIMAT0000075::ENST00000296412.12 ADH5 hsa-miR-20a-5p 23.86% 24.4%
MIMAT0000075::ENST00000262982.2 CSE1L hsa-miR-20a-5p 23.05% 23.56%
MIMAT0000075::ENST00000506654.5 CANX hsa-miR-20a-5p 22.28% 23.04%
MIMAT0000445::ENST00000535589.3 ACTR3 hsa-miR-126-3p 22.09% 22.16%
MIMAT0000075::ENST00000393085.3 MTPN hsa-miR-20a-5p 21.92% 22.41%
MIMAT0000434::ENST00000366839.8 SRP9 hsa-miR-142-3p 21.62% 21.89%
MIMAT0000434::ENST00000253413.9 ATP6V1E1 hsa-miR-142-3p 21.14% 21.39%
MIMAT0000434::ENST00000393820.2 NPM1 hsa-miR-142-3p 21.01% 21.26%
MIMAT0000075::ENST00000354336.7 CRKL hsa-miR-20a-5p 20.96% 21.67%
MIMAT0000434::ENST00000513177.5 NME2 hsa-miR-142-3p 20.96% 21.21%
MIMAT0000445::ENST00000419711.6 EIF5A hsa-miR-126-3p 20.93% 21.0%
MIMAT0000445::ENST00000270221.10 EMP3 hsa-miR-126-3p 20.87% 20.94%
MIMAT0000445::ENST00000529639.5 FAU hsa-miR-126-3p 20.38% 20.45%
MIMAT0000075::ENST00000393820.2 NPM1 hsa-miR-20a-5p 19.57% 20.33%
MIMAT0000075::ENST00000259873.4 MRPS18B hsa-miR-20a-5p 19.38% 20.13%
MIMAT0000434::ENST00000317534.5 MRPS24 hsa-miR-142-3p 19.17% 19.41%
MIMAT0000075::ENST00000392132.6 XRCC5 hsa-miR-20a-5p 19.15% 19.9%
MIMAT0000075::ENST00000321394.11 TCP1 hsa-miR-20a-5p 19.02% 19.76%
MIMAT0000075::ENST00000524896.5 EIF3M hsa-miR-20a-5p 19.0% 26.29%
MIMAT0000075::ENST00000263864.9 VAMP8 hsa-miR-20a-5p 18.96% 19.6%
MIMAT0000075::ENST00000375633.5 C6orf48 hsa-miR-20a-5p 18.94% 19.59%
MIMAT0000075::ENST00000375638.7 C6orf48 hsa-miR-20a-5p 18.93% 19.57%
MIMAT0000075::ENST00000354725.7 SND1 hsa-miR-20a-5p 18.84% 19.58%
MIMAT0000075::ENST00000215909.9 LGALS1 hsa-miR-20a-5p 18.84% 19.5%
MIMAT0000075::ENST00000483564.5 GABRE hsa-miR-20a-5p 18.81% 19.55%
MIMAT0000075::ENST00000621914.4 AP2B1 hsa-miR-20a-5p 18.68% 24.0%
MIMAT0000075::ENST00000367287.4 TIMM17A hsa-miR-20a-5p 18.5% 20.05%
MIMAT0000076::ENST00000264258.7 RPL31 hsa-miR-21-5p 18.45% 19.25%
MIMAT0000434::ENST00000484897.3 RPSAP58 hsa-miR-142-3p 18.36% 18.63%
MIMAT0000434::ENST00000236957.9 EEF1B2 hsa-miR-142-3p 17.77% 18.04%
MIMAT0000075::ENST00000362034.6 MRPL21 hsa-miR-20a-5p 17.65% 19.11%
MIMAT0000434::ENST00000360458.5 MORF4L2 hsa-miR-142-3p 17.63% 17.89%
MIMAT0000075::ENST00000517844.5 ZNF706 hsa-miR-20a-5p 17.43% 18.11%
MIMAT0000434::ENST00000392221.5 EEF1B2 hsa-miR-142-3p 17.41% 17.68%
MIMAT0000075::ENST00000549855.5 NACA hsa-miR-20a-5p 17.4% 18.09%
MIMAT0000075::ENST00000375549.7 SDHD hsa-miR-20a-5p 17.36% 18.04%
MIMAT0000445::ENST00000458332.1 RPS2P46 hsa-miR-126-3p 17.35% 17.41%
MIMAT0000075::ENST00000587838.1 SNHG16 hsa-miR-20a-5p 17.32% 17.99%
MIMAT0000075::ENST00000222284.9 TMEM147 hsa-miR-20a-5p 17.32% 17.99%
MIMAT0000075::ENST00000222005.6 CDC37 hsa-miR-20a-5p 17.23% 17.9%
MIMAT0000434::ENST00000573542.5 EIF5A hsa-miR-142-3p 17.23% 17.49%
MIMAT0000075::ENST00000371317.9 MCTS1 hsa-miR-20a-5p 17.2% 18.01%

Download this view in TSV:

curl -H Accept:text/tab-separated-values 'http://major.iric.ca/~poirigui/cgi-bin/mirbooking-scan/app.cgi/cell-lines/ENCSR612NLL'

Cite us

Weill N, Lisi V, Scott N, Dallaire P, Pelloux J, Major F. MirBooking simulates the stoichiometric mode of action of microRNAs, Nucleic Acids Res. 2015 43(14):6730-8.