miRBooking-scan explore miRBooking predictions

The miRBooking-scan Web service provides an exploratory view of reference microtargetomes computed by miRBooking.

Not interested in HeLa-S3? Choose a different cell line.

HeLa-S3 ENCSR068MRQ from ENCODE

Here's how you can reproduce this:

mirbooking --mirnas=data/mature.fa --relative-cutoff=0 --targets=data/gencode.v24.transcripts.fa --supplementary-model=yan-et-al-2018 --cutoff=200 --supplementary-scores=data/scores-3mer --3prime-footprint=7 --seed-scores=data/scores-7mer-3mismatch-centered --5prime-footprint=9 --tolerance=1e-8 --input=ENCSR068MRQ.tsv

Note that only interactions expected to reach at least 200 pM under ideal conditions were considered in this model.
Occupant target_name miRNA Name Bound Fraction Efficiency
MIMAT0000076::ENST00000368003.5 UFC1 hsa-miR-21-5p 45.7% 46.21%
MIMAT0000076::ENST00000382771.8 SERPINB5 hsa-miR-21-5p 37.95% 38.54%
MIMAT0000076::ENST00000317534.5 MRPS24 hsa-miR-21-5p 34.8% 35.42%
MIMAT0000076::ENST00000567159.5 HEXA hsa-miR-21-5p 33.02% 33.61%
MIMAT0000076::ENST00000553191.1 CNPY2 hsa-miR-21-5p 31.46% 32.11%
MIMAT0000076::ENST00000551475.5 CNPY2 hsa-miR-21-5p 31.44% 32.09%
MIMAT0000076::ENST00000409226.5 BZW1 hsa-miR-21-5p 27.84% 28.51%
MIMAT0000076::ENST00000323699.8 DEGS1 hsa-miR-21-5p 26.34% 27.04%
MIMAT0000076::ENST00000519004.5 PABPC1 hsa-miR-21-5p 26.28% 26.98%
MIMAT0000076::ENST00000414487.6 SNRPE hsa-miR-21-5p 26.24% 26.94%
MIMAT0000076::ENST00000268182.9 IQGAP1 hsa-miR-21-5p 26.14% 26.84%
MIMAT0000076::ENST00000394803.9 UBE2D3 hsa-miR-21-5p 25.76% 38.24%
MIMAT0000076::ENST00000328848.5 NOP10 hsa-miR-21-5p 25.09% 25.8%
MIMAT0000076::ENST00000309539.7 OLR1 hsa-miR-21-5p 24.89% 45.12%
MIMAT0000076::ENST00000611563.1 RPS29 hsa-miR-21-5p 22.85% 23.59%
MIMAT0000076::ENST00000438704.6 HMGB2 hsa-miR-21-5p 22.58% 23.31%
MIMAT0000076::ENST00000462668.5 SMC4 hsa-miR-21-5p 21.68% 28.59%
MIMAT0000076::ENST00000353245.7 YWHAZ hsa-miR-21-5p 20.77% 26.78%
MIMAT0000076::ENST00000395958.5 YWHAZ hsa-miR-21-5p 20.74% 26.74%
MIMAT0000076::ENST00000620941.1 SRSF3 hsa-miR-21-5p 20.45% 21.2%
MIMAT0000076::ENST00000328703.11 HAX1 hsa-miR-21-5p 20.45% 21.2%
MIMAT0000076::ENST00000356455.8 UBE2C hsa-miR-21-5p 20.45% 21.2%
MIMAT0000076::ENST00000372969.7 NDUFS5 hsa-miR-21-5p 20.43% 21.18%
MIMAT0000076::ENST00000239944.6 SERP1 hsa-miR-21-5p 20.35% 21.1%
MIMAT0000076::ENST00000376281.8 HNRNPK hsa-miR-21-5p 20.34% 21.09%
MIMAT0000076::ENST00000561325.5 EIF5 hsa-miR-21-5p 20.32% 21.07%
MIMAT0000076::ENST00000295770.3 STT3B hsa-miR-21-5p 20.28% 21.03%
MIMAT0000076::ENST00000359062.3 PDE3A hsa-miR-21-5p 20.22% 20.97%
MIMAT0000076::ENST00000296370.3 S100P hsa-miR-21-5p 20.0% 38.29%
MIMAT0000076::ENST00000548474.2 ATP5B hsa-miR-21-5p 19.9% 20.63%
MIMAT0000076::ENST00000264710.4 RAB10 hsa-miR-21-5p 19.28% 28.45%
MIMAT0000076::ENST00000375571.5 MAPRE1 hsa-miR-21-5p 19.19% 27.87%
MIMAT0000076::ENST00000457408.6 TMED4 hsa-miR-21-5p 18.07% 28.37%
MIMAT0000076::ENST00000367385.8 NEK7 hsa-miR-21-5p 17.92% 21.1%
MIMAT0000076::ENST00000393085.3 MTPN hsa-miR-21-5p 17.27% 27.85%
MIMAT0000076::ENST00000487273.6 ADAM9 hsa-miR-21-5p 16.99% 27.92%
MIMAT0000076::ENST00000566423.5 ARPP19 hsa-miR-21-5p 16.33% 44.43%
MIMAT0000076::ENST00000283179.13 HNRNPU hsa-miR-21-5p 16.3% 44.18%
MIMAT0000076::ENST00000360943.9 UBE2Z hsa-miR-21-5p 16.24% 26.24%
MIMAT0000680::ENST00000239944.6 SERP1 hsa-miR-106b-5p 16.01% 16.58%
MIMAT0000076::ENST00000442819.6 HNRNPH1 hsa-miR-21-5p 15.98% 16.78%
MIMAT0000076::ENST00000588815.5 CAPNS1 hsa-miR-21-5p 15.94% 16.74%
MIMAT0000680::ENST00000389266.7 GARS hsa-miR-106b-5p 15.77% 16.33%
MIMAT0000076::ENST00000306368.8 RNF181 hsa-miR-21-5p 15.55% 16.35%
MIMAT0000076::ENST00000323213.9 EIF3M hsa-miR-21-5p 15.54% 16.34%
MIMAT0000076::ENST00000600880.5 RPL37A hsa-miR-21-5p 15.53% 16.35%
MIMAT0000076::ENST00000532444.5 EIF3M hsa-miR-21-5p 15.51% 16.31%
MIMAT0000076::ENST00000439383.5 PSMD2 hsa-miR-21-5p 15.5% 16.3%
MIMAT0000076::ENST00000296122.10 PPP1CB hsa-miR-21-5p 15.41% 26.44%
MIMAT0000076::ENST00000573196.5 YWHAE hsa-miR-21-5p 15.15% 15.96%

Download this view in TSV:

curl -H Accept:text/tab-separated-values 'http://major.iric.ca/~poirigui/cgi-bin/mirbooking-scan/app.cgi/cell-lines/ENCSR068MRQ'

Cite us

Weill N, Lisi V, Scott N, Dallaire P, Pelloux J, Major F. MirBooking simulates the stoichiometric mode of action of microRNAs, Nucleic Acids Res. 2015 43(14):6730-8.