miRBooking1 simulates the stochiometric mode of action of miRNAs.
This page hosts the releases of the C implementation as well as some general information on running the program and interpreting its output.
The miRBooking-scan Web service is now available and propose the exploration of the microtargetome a few cell lines.
This release bring some build convenience, a standardized floats format (6 digits) and introduce a permissive MIT license.
More efficient computation of sequence index and fix issues with variable-length seed.
mirna_quantitycolumn in the TSV output.
This release backport some changes from the trunk and stabilize the C/Python API.
- Provide and reorganize a more detailed output with common names and vacancy.
- Add Pandas-based helper to the Python API to manipulate the output as a dataframe.
- Drop the
mirbooking-aggregatetool considering that we now have a Pandas-friendly API.
Few memory and CPU time optimizations and add
Initial release with a identical reimplementation of the Java version.
- score table (sha256)
This is passed via the
--score-tableflag and provides hybridization probabilities of all heptamer duplexes. It also possible to generate a custom table.
- We have some quantified cell lines from publicly available data.
- C API documentation
Weill N, Lisi V, Scott N, Dallaire P, Pelloux J, Major F. MirBooking simulates the stoichiometric mode of action of microRNAs, Nucleic Acids Res. 2015 43(14):6730-8.