MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:A 0 4 B20R:U 0 5 B21R:A 0 6 B22R:G 0 7 B23R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B23R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B22R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> B21R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {B21R:A -> A4R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {A5R:A -> B20R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B20R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B20R:U -> B21R:A: adjacent_5p upward } 0 15 {B21R:A -> B20R:U: adjacent_3p downward } 0 16 {B21R:A -> B22R:G: adjacent_5p upward } 0 17 {B22R:G -> B21R:A: adjacent_3p downward } 0 18 {B22R:G -> B23R:C: adjacent_5p upward } 0 19 {B23R:C -> B22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:A 0 3 A6R:A 0 4 B19R:U 0 5 B20R:U 0 6 B21R:A 0 7 B22R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B22R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B21R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {B21R:A -> A4R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A5R:A -> A6R:A: adjacent_5p upward } 0 9 {A6R:A -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> B20R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B20R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B19R:U -> B20R:U: adjacent_5p upward } 0 15 {B20R:U -> B19R:U: adjacent_3p downward } 0 16 {B20R:U -> B21R:A: adjacent_5p upward } 0 17 {B21R:A -> B20R:U: adjacent_3p downward } 0 18 {B21R:A -> B22R:G: adjacent_5p upward } 0 19 {B22R:G -> B21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:A 0 3 A7R:U 0 4 B18R:A 0 5 B19R:U 0 6 B20R:U 0 7 B21R:A 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B21R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {B21R:A -> A4R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A5R:A -> A6R:A: adjacent_5p upward } 0 5 {A6R:A -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> B20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B20R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:A -> A7R:U: adjacent_5p upward } 0 9 {A7R:U -> A6R:A: adjacent_3p downward } 0 10 {A6R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B18R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B18R:A -> B19R:U: adjacent_5p upward } 0 15 {B19R:U -> B18R:A: adjacent_3p downward } 0 16 {B19R:U -> B20R:U: adjacent_5p upward } 0 17 {B20R:U -> B19R:U: adjacent_3p downward } 0 18 {B20R:U -> B21R:A: adjacent_5p upward } 0 19 {B21R:A -> B20R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:A 0 2 A7R:U 0 3 A8R:U 0 4 B17R:A 0 5 B18R:A 0 6 B19R:U 0 7 B20R:U 0 [Edges] 0 {A5R:A -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> B20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B20R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:A -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:U -> A8R:U: adjacent_5p upward } 0 9 {A8R:U -> A7R:U: adjacent_3p downward } 0 10 {A7R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B18R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A8R:U -> B17R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B17R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B17R:A -> B18R:A: adjacent_5p upward } 0 15 {B18R:A -> B17R:A: adjacent_3p downward } 0 16 {B18R:A -> B19R:U: adjacent_5p upward } 0 17 {B19R:U -> B18R:A: adjacent_3p downward } 0 18 {B19R:U -> B20R:U: adjacent_5p upward } 0 19 {B20R:U -> B19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:U 0 2 A8R:U 0 3 A9R:A 0 4 B16R:G 0 5 B17R:A 0 6 B18R:A 0 7 B19R:U 0 [Edges] 0 {A6R:A -> A7R:U: adjacent_5p upward } 0 1 {A7R:U -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:U -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:U: adjacent_3p downward } 0 6 {A7R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B18R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A8R:U -> A9R:A: adjacent_5p upward } 0 9 {A9R:A -> A8R:U: adjacent_3p downward } 0 10 {A8R:U -> B17R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B17R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:A -> B16R:G: pairing antiparallel cis VIII Ww/Ww } 0 13 {B16R:G -> A9R:A: pairing antiparallel cis VIII Ww/Ww } 0 14 {B16R:G -> B17R:A: adjacent_5p upward } 0 15 {B17R:A -> B16R:G: adjacent_3p downward } 0 16 {B17R:A -> B18R:A: adjacent_5p upward } 0 17 {B18R:A -> B17R:A: adjacent_3p downward } 0 18 {B18R:A -> B19R:U: adjacent_5p upward } 0 19 {B19R:U -> B18R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:U 0 1 A8R:U 0 2 A9R:A 0 3 A10R:G 0 4 B15R:C 0 5 B16R:G 0 6 B17R:A 0 7 B18R:A 0 [Edges] 0 {A7R:U -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:U: adjacent_3p downward } 0 2 {A7R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B18R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A8R:U -> A9R:A: adjacent_5p upward } 0 5 {A9R:A -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> B17R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B17R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:A -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:A: adjacent_3p downward } 0 10 {A9R:A -> B16R:G: pairing antiparallel cis VIII Ww/Ww } 0 11 {B16R:G -> A9R:A: pairing antiparallel cis VIII Ww/Ww } 0 12 {A10R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B15R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B15R:C -> B16R:G: adjacent_5p upward } 0 15 {B16R:G -> B15R:C: adjacent_3p downward } 0 16 {B16R:G -> B17R:A: adjacent_5p upward } 0 17 {B17R:A -> B16R:G: adjacent_3p downward } 0 18 {B17R:A -> B18R:A: adjacent_5p upward } 0 19 {B18R:A -> B17R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:A 0 2 A10R:G 0 3 A11R:C 0 4 B14R:G 0 5 B15R:C 0 6 B16R:G 0 7 B17R:A 0 [Edges] 0 {A8R:U -> A9R:A: adjacent_5p upward } 0 1 {A9R:A -> A8R:U: adjacent_3p downward } 0 2 {A8R:U -> B17R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B17R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:A -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:A: adjacent_3p downward } 0 6 {A9R:A -> B16R:G: pairing antiparallel cis VIII Ww/Ww } 0 7 {B16R:G -> A9R:A: pairing antiparallel cis VIII Ww/Ww } 0 8 {A10R:G -> A11R:C: adjacent_5p upward } 0 9 {A11R:C -> A10R:G: adjacent_3p downward } 0 10 {A10R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B15R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A11R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B14R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B14R:G -> B15R:C: adjacent_5p upward } 0 15 {B15R:C -> B14R:G: adjacent_3p downward } 0 16 {B15R:C -> B16R:G: adjacent_5p upward } 0 17 {B16R:G -> B15R:C: adjacent_3p downward } 0 18 {B16R:G -> B17R:A: adjacent_5p upward } 0 19 {B17R:A -> B16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:C 0 2 4R:G 0 3 5R:U 0 4 17R:A 0 5 18R:U 0 6 19R:G 0 7 20R:C 0 [Edges] 0 {2R:G -> 3R:C: adjacent_5p } 0 1 {3R:C -> 2R:G: adjacent_3p } 0 2 {2R:G -> 20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {20R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:C -> 4R:G: adjacent_5p } 0 5 {4R:G -> 3R:C: adjacent_3p } 0 6 {3R:C -> 19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {19R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:G -> 5R:U: adjacent_5p upward } 0 9 {5R:U -> 4R:G: adjacent_3p downward } 0 10 {4R:G -> 18R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {18R:U -> 4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {4R:G -> 19R:G: outward } 0 13 {19R:G -> 4R:G: outward } 0 14 {5R:U -> 17R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {17R:A -> 5R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {17R:A -> 18R:U: adjacent_5p upward } 0 17 {18R:U -> 17R:A: adjacent_3p downward } 0 18 {18R:U -> 19R:G: adjacent_5p } 0 19 {19R:G -> 18R:U: adjacent_3p } 0 20 {19R:G -> 20R:C: adjacent_5p upward } 0 21 {20R:C -> 19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 B1R:A 0 1 B2R:A 0 2 B3R:A 0 3 B4R:A 0 4 C6R:U 0 5 C7R:U 0 6 C8R:U 0 7 C9R:U 0 [Edges] 0 {B1R:A -> B2R:A: adjacent_5p upward } 0 1 {B2R:A -> B1R:A: adjacent_3p downward } 0 2 {B1R:A -> C9R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C9R:U -> B1R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B2R:A -> B3R:A: adjacent_5p upward } 0 5 {B3R:A -> B2R:A: adjacent_3p downward } 0 6 {B3R:A -> B4R:A: adjacent_5p upward } 0 7 {B4R:A -> B3R:A: adjacent_3p downward } 0 8 {B3R:A -> C7R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {C7R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B4R:A -> C6R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C6R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C6R:U -> C7R:U: adjacent_5p upward } 0 13 {C7R:U -> C6R:U: adjacent_3p downward } 0 14 {C7R:U -> C8R:U: adjacent_5p upward } 0 15 {C8R:U -> C7R:U: adjacent_3p downward } 0 16 {C8R:U -> C9R:U: adjacent_5p } 0 17 {C9R:U -> C8R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 B3R:A 0 1 B4R:A 0 2 B5R:A 0 3 B6R:A 0 4 C4R:U 0 5 C5R:U 0 6 C6R:U 0 7 C7R:U 0 [Edges] 0 {B3R:A -> B4R:A: adjacent_5p upward } 0 1 {B4R:A -> B3R:A: adjacent_3p downward } 0 2 {B3R:A -> C7R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C7R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B4R:A -> B5R:A: adjacent_5p upward } 0 5 {B5R:A -> B4R:A: adjacent_3p downward } 0 6 {B4R:A -> C6R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C6R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B5R:A -> B6R:A: adjacent_5p upward } 0 9 {B6R:A -> B5R:A: adjacent_3p downward } 0 10 {B5R:A -> C5R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C5R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B6R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {C4R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {C4R:U -> C5R:U: adjacent_5p upward } 0 15 {C5R:U -> C4R:U: adjacent_3p downward } 0 16 {C5R:U -> C6R:U: adjacent_5p upward } 0 17 {C6R:U -> C5R:U: adjacent_3p downward } 0 18 {C6R:U -> C7R:U: adjacent_5p upward } 0 19 {C7R:U -> C6R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B4R:A 0 1 B5R:A 0 2 B6R:A 0 3 B7R:A 0 4 C3R:U 0 5 C4R:U 0 6 C5R:U 0 7 C6R:U 0 [Edges] 0 {B4R:A -> B5R:A: adjacent_5p upward } 0 1 {B5R:A -> B4R:A: adjacent_3p downward } 0 2 {B4R:A -> C6R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C6R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B5R:A -> B6R:A: adjacent_5p upward } 0 5 {B6R:A -> B5R:A: adjacent_3p downward } 0 6 {B5R:A -> C5R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C5R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B6R:A -> B7R:A: adjacent_5p upward } 0 9 {B7R:A -> B6R:A: adjacent_3p downward } 0 10 {B6R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C4R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B7R:A -> C3R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {C3R:U -> B7R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {C3R:U -> C4R:U: adjacent_5p } 0 15 {C4R:U -> C3R:U: adjacent_3p } 0 16 {C4R:U -> C5R:U: adjacent_5p upward } 0 17 {C5R:U -> C4R:U: adjacent_3p downward } 0 18 {C5R:U -> C6R:U: adjacent_5p upward } 0 19 {C6R:U -> C5R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B5R:A 0 1 B6R:A 0 2 B7R:A 0 3 B8R:A 0 4 C2R:U 0 5 C3R:U 0 6 C4R:U 0 7 C5R:U 0 [Edges] 0 {B5R:A -> B6R:A: adjacent_5p upward } 0 1 {B6R:A -> B5R:A: adjacent_3p downward } 0 2 {B5R:A -> C5R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C5R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B6R:A -> B7R:A: adjacent_5p upward } 0 5 {B7R:A -> B6R:A: adjacent_3p downward } 0 6 {B6R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C4R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B7R:A -> B8R:A: adjacent_5p upward } 0 9 {B8R:A -> B7R:A: adjacent_3p downward } 0 10 {B7R:A -> C3R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C3R:U -> B7R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B8R:A -> C2R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {C2R:U -> B8R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {C2R:U -> C3R:U: adjacent_5p } 0 15 {C3R:U -> C2R:U: adjacent_3p } 0 16 {C3R:U -> C4R:U: adjacent_5p } 0 17 {C4R:U -> C3R:U: adjacent_3p } 0 18 {C4R:U -> C5R:U: adjacent_5p upward } 0 19 {C5R:U -> C4R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B6R:A 0 1 B7R:A 0 2 B8R:A 0 3 B9R:A 0 4 C1R:U 0 5 C2R:U 0 6 C3R:U 0 7 C4R:U 0 [Edges] 0 {B6R:A -> B7R:A: adjacent_5p upward } 0 1 {B7R:A -> B6R:A: adjacent_3p downward } 0 2 {B6R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C4R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B7R:A -> B8R:A: adjacent_5p upward } 0 5 {B8R:A -> B7R:A: adjacent_3p downward } 0 6 {B7R:A -> C3R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C3R:U -> B7R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B8R:A -> B9R:A: adjacent_5p upward } 0 9 {B9R:A -> B8R:A: adjacent_3p downward } 0 10 {B8R:A -> C2R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C2R:U -> B8R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B9R:A -> C1R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {C1R:U -> B9R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {C1R:U -> C2R:U: adjacent_5p upward } 0 15 {C2R:U -> C1R:U: adjacent_3p downward } 0 16 {C2R:U -> C3R:U: adjacent_5p } 0 17 {C3R:U -> C2R:U: adjacent_3p } 0 18 {C3R:U -> C4R:U: adjacent_5p } 0 19 {C4R:U -> C3R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:G 0 2 A7R:C 0 3 A8R:U 0 4 A14R:A 0 5 A15R:G 0 6 A16R:C 0 7 A17R:G 0 [Edges] 0 {A5R:C -> A6R:G: adjacent_5p } 0 1 {A6R:G -> A5R:C: adjacent_3p } 0 2 {A5R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:G -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A16R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> A17R:G: outward } 0 9 {A17R:G -> A6R:G: outward } 0 10 {A7R:C -> A8R:U: adjacent_5p } 0 11 {A8R:U -> A7R:C: adjacent_3p } 0 12 {A7R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A15R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A8R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A14R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A14R:A -> A15R:G: adjacent_5p upward } 0 17 {A15R:G -> A14R:A: adjacent_3p downward } 0 18 {A15R:G -> A16R:C: adjacent_5p upward } 0 19 {A16R:C -> A15R:G: adjacent_3p downward } 0 20 {A16R:C -> A17R:G: adjacent_5p } 0 21 {A17R:G -> A16R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:C 0 2 A8R:U 0 3 A9R:G 0 4 A13R:A 0 5 A14R:A 0 6 A15R:G 0 7 A16R:C 0 [Edges] 0 {A6R:G -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A16R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:C -> A8R:U: adjacent_5p } 0 5 {A8R:U -> A7R:C: adjacent_3p } 0 6 {A7R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A15R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:U -> A9R:G: adjacent_5p upward } 0 9 {A9R:G -> A8R:U: adjacent_3p downward } 0 10 {A8R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A14R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:G -> A13R:A: pairing antiparallel trans one_hbond Bs/Hh } 0 13 {A13R:A -> A9R:G: pairing antiparallel trans one_hbond Hh/Bs } 0 14 {A13R:A -> A14R:A: adjacent_5p upward } 0 15 {A14R:A -> A13R:A: adjacent_3p downward } 0 16 {A14R:A -> A15R:G: adjacent_5p upward } 0 17 {A15R:G -> A14R:A: adjacent_3p downward } 0 18 {A15R:G -> A16R:C: adjacent_5p upward } 0 19 {A16R:C -> A15R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 69R:G 0 1 70R:C 0 2 71R:C 0 3 72R:G 0 4 104R:A 0 5 105R:G 0 6 106R:G 0 7 107R:C 0 [Edges] 0 {69R:G -> 70R:C: adjacent_5p upward } 0 1 {70R:C -> 69R:G: adjacent_3p downward } 0 2 {69R:G -> 107R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {107R:C -> 69R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {70R:C -> 71R:C: adjacent_5p } 0 5 {71R:C -> 70R:C: adjacent_3p } 0 6 {70R:C -> 106R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {106R:G -> 70R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {71R:C -> 72R:G: adjacent_5p upward } 0 9 {72R:G -> 71R:C: adjacent_3p downward } 0 10 {71R:C -> 105R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {105R:G -> 71R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {72R:G -> 104R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {104R:A -> 72R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {104R:A -> 105R:G: adjacent_5p upward } 0 15 {105R:G -> 104R:A: adjacent_3p downward } 0 16 {105R:G -> 106R:G: adjacent_5p upward } 0 17 {106R:G -> 105R:G: adjacent_3p downward } 0 18 {106R:G -> 107R:C: adjacent_5p upward } 0 19 {107R:C -> 106R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 70R:C 0 1 71R:C 0 2 72R:G 0 3 73R:A 0 4 103R:U 0 5 104R:A 0 6 105R:G 0 7 106R:G 0 [Edges] 0 {70R:C -> 71R:C: adjacent_5p } 0 1 {71R:C -> 70R:C: adjacent_3p } 0 2 {70R:C -> 106R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {106R:G -> 70R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {71R:C -> 72R:G: adjacent_5p upward } 0 5 {72R:G -> 71R:C: adjacent_3p downward } 0 6 {71R:C -> 105R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {105R:G -> 71R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {72R:G -> 73R:A: adjacent_5p } 0 9 {73R:A -> 72R:G: adjacent_3p } 0 10 {72R:G -> 104R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {104R:A -> 72R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {73R:A -> 103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 13 {103R:U -> 73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 14 {73R:A -> 104R:A: outward } 0 15 {104R:A -> 73R:A: outward } 0 16 {103R:U -> 104R:A: adjacent_5p upward } 0 17 {104R:A -> 103R:U: adjacent_3p downward } 0 18 {104R:A -> 105R:G: adjacent_5p upward } 0 19 {105R:G -> 104R:A: adjacent_3p downward } 0 20 {105R:G -> 106R:G: adjacent_5p upward } 0 21 {106R:G -> 105R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 71R:C 0 1 72R:G 0 2 73R:A 0 3 74R:U 0 4 102R:G 0 5 103R:U 0 6 104R:A 0 7 105R:G 0 [Edges] 0 {71R:C -> 72R:G: adjacent_5p upward } 0 1 {72R:G -> 71R:C: adjacent_3p downward } 0 2 {71R:C -> 105R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {105R:G -> 71R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {72R:G -> 73R:A: adjacent_5p } 0 5 {73R:A -> 72R:G: adjacent_3p } 0 6 {72R:G -> 104R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {104R:A -> 72R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {73R:A -> 74R:U: adjacent_5p upward } 0 9 {74R:U -> 73R:A: adjacent_3p downward } 0 10 {73R:A -> 103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 11 {103R:U -> 73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 12 {73R:A -> 104R:A: outward } 0 13 {104R:A -> 73R:A: outward } 0 14 {74R:U -> 102R:G: pairing antiparallel trans one_hbond 91 Hh/Ww } 0 15 {102R:G -> 74R:U: pairing antiparallel trans one_hbond 91 Ww/Hh } 0 16 {102R:G -> 103R:U: adjacent_5p upward } 0 17 {103R:U -> 102R:G: adjacent_3p downward } 0 18 {103R:U -> 104R:A: adjacent_5p upward } 0 19 {104R:A -> 103R:U: adjacent_3p downward } 0 20 {104R:A -> 105R:G: adjacent_5p upward } 0 21 {105R:G -> 104R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 72R:G 0 1 73R:A 0 2 74R:U 0 3 75R:G 0 4 101R:A 0 5 102R:G 0 6 103R:U 0 7 104R:A 0 [Edges] 0 {72R:G -> 73R:A: adjacent_5p } 0 1 {73R:A -> 72R:G: adjacent_3p } 0 2 {72R:G -> 104R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {104R:A -> 72R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {73R:A -> 74R:U: adjacent_5p upward } 0 5 {74R:U -> 73R:A: adjacent_3p downward } 0 6 {73R:A -> 103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 7 {103R:U -> 73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 8 {73R:A -> 104R:A: outward } 0 9 {104R:A -> 73R:A: outward } 0 10 {74R:U -> 75R:G: adjacent_5p upward } 0 11 {75R:G -> 74R:U: adjacent_3p downward } 0 12 {74R:U -> 102R:G: pairing antiparallel trans one_hbond 91 Hh/Ww } 0 13 {102R:G -> 74R:U: pairing antiparallel trans one_hbond 91 Ww/Hh } 0 14 {75R:G -> 101R:A: pairing antiparallel cis one_hbond 64 Hw/Wh } 0 15 {101R:A -> 75R:G: pairing antiparallel cis one_hbond 64 Wh/Hw } 0 16 {101R:A -> 102R:G: adjacent_5p upward } 0 17 {102R:G -> 101R:A: adjacent_3p downward } 0 18 {102R:G -> 103R:U: adjacent_5p upward } 0 19 {103R:U -> 102R:G: adjacent_3p downward } 0 20 {103R:U -> 104R:A: adjacent_5p upward } 0 21 {104R:A -> 103R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 73R:A 0 1 74R:U 0 2 75R:G 0 3 76R:G 0 4 100R:G 0 5 101R:A 0 6 102R:G 0 7 103R:U 0 [Edges] 0 {73R:A -> 74R:U: adjacent_5p upward } 0 1 {74R:U -> 73R:A: adjacent_3p downward } 0 2 {73R:A -> 103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {103R:U -> 73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {74R:U -> 75R:G: adjacent_5p upward } 0 5 {75R:G -> 74R:U: adjacent_3p downward } 0 6 {74R:U -> 102R:G: pairing antiparallel trans one_hbond 91 Hh/Ww } 0 7 {102R:G -> 74R:U: pairing antiparallel trans one_hbond 91 Ww/Hh } 0 8 {75R:G -> 76R:G: adjacent_5p upward } 0 9 {76R:G -> 75R:G: adjacent_3p downward } 0 10 {75R:G -> 101R:A: pairing antiparallel cis one_hbond 64 Hw/Wh } 0 11 {101R:A -> 75R:G: pairing antiparallel cis one_hbond 64 Wh/Hw } 0 12 {76R:G -> 100R:G: pairing antiparallel trans 115 Ww/Bh } 0 13 {100R:G -> 76R:G: pairing antiparallel trans 115 Bh/Ww } 0 14 {100R:G -> 101R:A: adjacent_5p upward } 0 15 {101R:A -> 100R:G: adjacent_3p downward } 0 16 {101R:A -> 102R:G: adjacent_5p upward } 0 17 {102R:G -> 101R:A: adjacent_3p downward } 0 18 {102R:G -> 103R:U: adjacent_5p upward } 0 19 {103R:U -> 102R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 74R:U 0 1 75R:G 0 2 76R:G 0 3 77R:U 0 4 99R:A 0 5 100R:G 0 6 101R:A 0 7 102R:G 0 [Edges] 0 {74R:U -> 75R:G: adjacent_5p upward } 0 1 {75R:G -> 74R:U: adjacent_3p downward } 0 2 {74R:U -> 102R:G: pairing antiparallel trans one_hbond 91 Hh/Ww } 0 3 {102R:G -> 74R:U: pairing antiparallel trans one_hbond 91 Ww/Hh } 0 4 {75R:G -> 76R:G: adjacent_5p upward } 0 5 {76R:G -> 75R:G: adjacent_3p downward } 0 6 {75R:G -> 101R:A: pairing antiparallel cis one_hbond 64 Hw/Wh } 0 7 {101R:A -> 75R:G: pairing antiparallel cis one_hbond 64 Wh/Hw } 0 8 {76R:G -> 77R:U: adjacent_5p upward } 0 9 {77R:U -> 76R:G: adjacent_3p downward } 0 10 {76R:G -> 100R:G: pairing antiparallel trans 115 Ww/Bh } 0 11 {100R:G -> 76R:G: pairing antiparallel trans 115 Bh/Ww } 0 12 {77R:U -> 99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 13 {99R:A -> 77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 14 {99R:A -> 100R:G: adjacent_5p upward } 0 15 {100R:G -> 99R:A: adjacent_3p downward } 0 16 {100R:G -> 101R:A: adjacent_5p upward } 0 17 {101R:A -> 100R:G: adjacent_3p downward } 0 18 {101R:A -> 102R:G: adjacent_5p upward } 0 19 {102R:G -> 101R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 75R:G 0 1 76R:G 0 2 77R:U 0 3 78R:A 0 4 98R:G 0 5 99R:A 0 6 100R:G 0 7 101R:A 0 [Edges] 0 {75R:G -> 76R:G: adjacent_5p upward } 0 1 {76R:G -> 75R:G: adjacent_3p downward } 0 2 {75R:G -> 101R:A: pairing antiparallel cis one_hbond 64 Hw/Wh } 0 3 {101R:A -> 75R:G: pairing antiparallel cis one_hbond 64 Wh/Hw } 0 4 {76R:G -> 77R:U: adjacent_5p upward } 0 5 {77R:U -> 76R:G: adjacent_3p downward } 0 6 {76R:G -> 100R:G: pairing antiparallel trans 115 Ww/Bh } 0 7 {100R:G -> 76R:G: pairing antiparallel trans 115 Bh/Ww } 0 8 {77R:U -> 78R:A: adjacent_5p upward } 0 9 {78R:A -> 77R:U: adjacent_3p downward } 0 10 {77R:U -> 99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 11 {99R:A -> 77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 12 {78R:A -> 98R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {98R:G -> 78R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {78R:A -> 99R:A: outward } 0 15 {99R:A -> 78R:A: outward } 0 16 {98R:G -> 99R:A: adjacent_5p } 0 17 {99R:A -> 98R:G: adjacent_3p } 0 18 {99R:A -> 100R:G: adjacent_5p upward } 0 19 {100R:G -> 99R:A: adjacent_3p downward } 0 20 {100R:G -> 101R:A: adjacent_5p upward } 0 21 {101R:A -> 100R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 76R:G 0 1 77R:U 0 2 78R:A 0 3 79R:G 0 4 97R:C 0 5 98R:G 0 6 99R:A 0 7 100R:G 0 [Edges] 0 {76R:G -> 77R:U: adjacent_5p upward } 0 1 {77R:U -> 76R:G: adjacent_3p downward } 0 2 {76R:G -> 100R:G: pairing antiparallel trans 115 Ww/Bh } 0 3 {100R:G -> 76R:G: pairing antiparallel trans 115 Bh/Ww } 0 4 {77R:U -> 78R:A: adjacent_5p upward } 0 5 {78R:A -> 77R:U: adjacent_3p downward } 0 6 {77R:U -> 99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 7 {99R:A -> 77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 8 {78R:A -> 79R:G: adjacent_5p upward } 0 9 {79R:G -> 78R:A: adjacent_3p downward } 0 10 {78R:A -> 98R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {98R:G -> 78R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {78R:A -> 99R:A: outward } 0 13 {99R:A -> 78R:A: outward } 0 14 {79R:G -> 97R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {97R:C -> 79R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {97R:C -> 98R:G: adjacent_5p upward } 0 17 {98R:G -> 97R:C: adjacent_3p downward } 0 18 {98R:G -> 99R:A: adjacent_5p } 0 19 {99R:A -> 98R:G: adjacent_3p } 0 20 {99R:A -> 100R:G: adjacent_5p upward } 0 21 {100R:G -> 99R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 77R:U 0 1 78R:A 0 2 79R:G 0 3 80R:U 0 4 96R:G 0 5 97R:C 0 6 98R:G 0 7 99R:A 0 [Edges] 0 {77R:U -> 78R:A: adjacent_5p upward } 0 1 {78R:A -> 77R:U: adjacent_3p downward } 0 2 {77R:U -> 99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {99R:A -> 77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {78R:A -> 79R:G: adjacent_5p upward } 0 5 {79R:G -> 78R:A: adjacent_3p downward } 0 6 {78R:A -> 98R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {98R:G -> 78R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {78R:A -> 99R:A: outward } 0 9 {99R:A -> 78R:A: outward } 0 10 {79R:G -> 80R:U: adjacent_5p upward } 0 11 {80R:U -> 79R:G: adjacent_3p downward } 0 12 {79R:G -> 97R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {97R:C -> 79R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {80R:U -> 96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {96R:G -> 80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {96R:G -> 97R:C: adjacent_5p upward } 0 17 {97R:C -> 96R:G: adjacent_3p downward } 0 18 {97R:C -> 98R:G: adjacent_5p upward } 0 19 {98R:G -> 97R:C: adjacent_3p downward } 0 20 {98R:G -> 99R:A: adjacent_5p } 0 21 {99R:A -> 98R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 78R:A 0 1 79R:G 0 2 80R:U 0 3 81R:G 0 4 95R:U 0 5 96R:G 0 6 97R:C 0 7 98R:G 0 [Edges] 0 {78R:A -> 79R:G: adjacent_5p upward } 0 1 {79R:G -> 78R:A: adjacent_3p downward } 0 2 {78R:A -> 98R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {98R:G -> 78R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {79R:G -> 80R:U: adjacent_5p upward } 0 5 {80R:U -> 79R:G: adjacent_3p downward } 0 6 {79R:G -> 97R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {97R:C -> 79R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {80R:U -> 81R:G: adjacent_5p } 0 9 {81R:G -> 80R:U: adjacent_3p } 0 10 {80R:U -> 96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {96R:G -> 80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {81R:G -> 95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {95R:U -> 81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {81R:G -> 96R:G: outward } 0 15 {96R:G -> 81R:G: outward } 0 16 {95R:U -> 96R:G: adjacent_5p } 0 17 {96R:G -> 95R:U: adjacent_3p } 0 18 {96R:G -> 97R:C: adjacent_5p upward } 0 19 {97R:C -> 96R:G: adjacent_3p downward } 0 20 {97R:C -> 98R:G: adjacent_5p upward } 0 21 {98R:G -> 97R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 79R:G 0 1 80R:U 0 2 81R:G 0 3 82R:U 0 4 94R:A 0 5 95R:U 0 6 96R:G 0 7 97R:C 0 [Edges] 0 {79R:G -> 80R:U: adjacent_5p upward } 0 1 {80R:U -> 79R:G: adjacent_3p downward } 0 2 {79R:G -> 97R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {97R:C -> 79R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {80R:U -> 81R:G: adjacent_5p } 0 5 {81R:G -> 80R:U: adjacent_3p } 0 6 {80R:U -> 96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {96R:G -> 80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {81R:G -> 82R:U: adjacent_5p upward } 0 9 {82R:U -> 81R:G: adjacent_3p downward } 0 10 {81R:G -> 95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {95R:U -> 81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {81R:G -> 96R:G: outward } 0 13 {96R:G -> 81R:G: outward } 0 14 {82R:U -> 94R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {94R:A -> 82R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {94R:A -> 95R:U: adjacent_5p upward } 0 17 {95R:U -> 94R:A: adjacent_3p downward } 0 18 {95R:U -> 96R:G: adjacent_5p } 0 19 {96R:G -> 95R:U: adjacent_3p } 0 20 {96R:G -> 97R:C: adjacent_5p upward } 0 21 {97R:C -> 96R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 80R:U 0 1 81R:G 0 2 82R:U 0 3 83R:G 0 4 93R:C 0 5 94R:A 0 6 95R:U 0 7 96R:G 0 [Edges] 0 {80R:U -> 81R:G: adjacent_5p } 0 1 {81R:G -> 80R:U: adjacent_3p } 0 2 {80R:U -> 96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {96R:G -> 80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {81R:G -> 82R:U: adjacent_5p upward } 0 5 {82R:U -> 81R:G: adjacent_3p downward } 0 6 {81R:G -> 95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {95R:U -> 81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {81R:G -> 96R:G: outward } 0 9 {96R:G -> 81R:G: outward } 0 10 {82R:U -> 83R:G: adjacent_5p upward } 0 11 {83R:G -> 82R:U: adjacent_3p downward } 0 12 {82R:U -> 94R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {94R:A -> 82R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {83R:G -> 93R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {93R:C -> 83R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {83R:G -> 94R:A: outward } 0 17 {94R:A -> 83R:G: outward } 0 18 {93R:C -> 94R:A: adjacent_5p upward } 0 19 {94R:A -> 93R:C: adjacent_3p downward } 0 20 {94R:A -> 95R:U: adjacent_5p upward } 0 21 {95R:U -> 94R:A: adjacent_3p downward } 0 22 {95R:U -> 96R:G: adjacent_5p } 0 23 {96R:G -> 95R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 81R:G 0 1 82R:U 0 2 83R:G 0 3 84R:G 0 4 92R:C 0 5 93R:C 0 6 94R:A 0 7 95R:U 0 [Edges] 0 {81R:G -> 82R:U: adjacent_5p upward } 0 1 {82R:U -> 81R:G: adjacent_3p downward } 0 2 {81R:G -> 95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {95R:U -> 81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {82R:U -> 83R:G: adjacent_5p upward } 0 5 {83R:G -> 82R:U: adjacent_3p downward } 0 6 {82R:U -> 94R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {94R:A -> 82R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {83R:G -> 84R:G: adjacent_5p upward } 0 9 {84R:G -> 83R:G: adjacent_3p downward } 0 10 {83R:G -> 93R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {93R:C -> 83R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {83R:G -> 94R:A: outward } 0 13 {94R:A -> 83R:G: outward } 0 14 {84R:G -> 92R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {92R:C -> 84R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {92R:C -> 93R:C: adjacent_5p } 0 17 {93R:C -> 92R:C: adjacent_3p } 0 18 {93R:C -> 94R:A: adjacent_5p upward } 0 19 {94R:A -> 93R:C: adjacent_3p downward } 0 20 {94R:A -> 95R:U: adjacent_5p upward } 0 21 {95R:U -> 94R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 82R:U 0 1 83R:G 0 2 84R:G 0 3 85R:G 0 4 91R:C 0 5 92R:C 0 6 93R:C 0 7 94R:A 0 [Edges] 0 {82R:U -> 83R:G: adjacent_5p upward } 0 1 {83R:G -> 82R:U: adjacent_3p downward } 0 2 {82R:U -> 94R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {94R:A -> 82R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {83R:G -> 84R:G: adjacent_5p upward } 0 5 {84R:G -> 83R:G: adjacent_3p downward } 0 6 {83R:G -> 93R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {93R:C -> 83R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {83R:G -> 94R:A: outward } 0 9 {94R:A -> 83R:G: outward } 0 10 {84R:G -> 85R:G: adjacent_5p upward } 0 11 {85R:G -> 84R:G: adjacent_3p downward } 0 12 {84R:G -> 92R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {92R:C -> 84R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {85R:G -> 91R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {91R:C -> 85R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {91R:C -> 92R:C: adjacent_5p } 0 17 {92R:C -> 91R:C: adjacent_3p } 0 18 {92R:C -> 93R:C: adjacent_5p } 0 19 {93R:C -> 92R:C: adjacent_3p } 0 20 {93R:C -> 94R:A: adjacent_5p upward } 0 21 {94R:A -> 93R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 83R:G 0 1 84R:G 0 2 85R:G 0 3 86R:G 0 4 90R:C 0 5 91R:C 0 6 92R:C 0 7 93R:C 0 [Edges] 0 {83R:G -> 84R:G: adjacent_5p upward } 0 1 {84R:G -> 83R:G: adjacent_3p downward } 0 2 {83R:G -> 93R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {93R:C -> 83R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {84R:G -> 85R:G: adjacent_5p upward } 0 5 {85R:G -> 84R:G: adjacent_3p downward } 0 6 {84R:G -> 92R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {92R:C -> 84R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {85R:G -> 86R:G: adjacent_5p upward } 0 9 {86R:G -> 85R:G: adjacent_3p downward } 0 10 {85R:G -> 91R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {91R:C -> 85R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {86R:G -> 90R:C: pairing antiparallel cis 128 Bs/Ww } 0 13 {90R:C -> 86R:G: pairing antiparallel cis 128 Ww/Bs } 0 14 {90R:C -> 91R:C: adjacent_5p } 0 15 {91R:C -> 90R:C: adjacent_3p } 0 16 {91R:C -> 92R:C: adjacent_5p } 0 17 {92R:C -> 91R:C: adjacent_3p } 0 18 {92R:C -> 93R:C: adjacent_5p } 0 19 {93R:C -> 92R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:G 0 2 4R:A 0 3 5R:G 0 4 13R:C 0 5 14R:U 0 6 15R:C 0 7 16R:C 0 [Edges] 0 {2R:G -> 3R:G: adjacent_5p upward } 0 1 {3R:G -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 16R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {16R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:G -> 4R:A: adjacent_5p } 0 5 {4R:A -> 3R:G: adjacent_3p } 0 6 {3R:G -> 15R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {15R:C -> 3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:A -> 5R:G: adjacent_5p upward } 0 9 {5R:G -> 4R:A: adjacent_3p downward } 0 10 {4R:A -> 14R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {14R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {5R:G -> 13R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {13R:C -> 5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {13R:C -> 14R:U: adjacent_5p upward } 0 15 {14R:U -> 13R:C: adjacent_3p downward } 0 16 {14R:U -> 15R:C: adjacent_5p upward } 0 17 {15R:C -> 14R:U: adjacent_3p downward } 0 18 {15R:C -> 16R:C: adjacent_5p upward } 0 19 {16R:C -> 15R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 24R:U 0 1 25R:U 0 2 26R:C 0 3 27R:C 0 4 38R:G 0 5 39R:G 0 6 40R:A 0 7 41R:A 0 [Edges] 0 {24R:U -> 25R:U: adjacent_5p } 0 1 {25R:U -> 24R:U: adjacent_3p } 0 2 {24R:U -> 41R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {41R:A -> 24R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {25R:U -> 26R:C: adjacent_5p upward } 0 5 {26R:C -> 25R:U: adjacent_3p downward } 0 6 {25R:U -> 40R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {40R:A -> 25R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {26R:C -> 27R:C: adjacent_5p upward } 0 9 {27R:C -> 26R:C: adjacent_3p downward } 0 10 {26R:C -> 39R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {39R:G -> 26R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {27R:C -> 38R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {38R:G -> 27R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {38R:G -> 39R:G: adjacent_5p upward } 0 15 {39R:G -> 38R:G: adjacent_3p downward } 0 16 {39R:G -> 40R:A: adjacent_5p upward } 0 17 {40R:A -> 39R:G: adjacent_3p downward } 0 18 {40R:A -> 41R:A: adjacent_5p upward } 0 19 {41R:A -> 40R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 25R:U 0 1 26R:C 0 2 27R:C 0 3 28R:G 0 4 37R:C 0 5 38R:G 0 6 39R:G 0 7 40R:A 0 [Edges] 0 {25R:U -> 26R:C: adjacent_5p upward } 0 1 {26R:C -> 25R:U: adjacent_3p downward } 0 2 {25R:U -> 40R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {40R:A -> 25R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {26R:C -> 27R:C: adjacent_5p upward } 0 5 {27R:C -> 26R:C: adjacent_3p downward } 0 6 {26R:C -> 39R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {39R:G -> 26R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {27R:C -> 28R:G: adjacent_5p } 0 9 {28R:G -> 27R:C: adjacent_3p } 0 10 {27R:C -> 38R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {38R:G -> 27R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {28R:G -> 37R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {37R:C -> 28R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {28R:G -> 38R:G: outward } 0 15 {38R:G -> 28R:G: outward } 0 16 {37R:C -> 38R:G: adjacent_5p } 0 17 {38R:G -> 37R:C: adjacent_3p } 0 18 {38R:G -> 39R:G: adjacent_5p upward } 0 19 {39R:G -> 38R:G: adjacent_3p downward } 0 20 {39R:G -> 40R:A: adjacent_5p upward } 0 21 {40R:A -> 39R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 26R:C 0 1 27R:C 0 2 28R:G 0 3 29R:A 0 4 36R:U 0 5 37R:C 0 6 38R:G 0 7 39R:G 0 [Edges] 0 {26R:C -> 27R:C: adjacent_5p upward } 0 1 {27R:C -> 26R:C: adjacent_3p downward } 0 2 {26R:C -> 39R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {39R:G -> 26R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {27R:C -> 28R:G: adjacent_5p } 0 5 {28R:G -> 27R:C: adjacent_3p } 0 6 {27R:C -> 38R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {38R:G -> 27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {28R:G -> 29R:A: adjacent_5p upward } 0 9 {29R:A -> 28R:G: adjacent_3p downward } 0 10 {28R:G -> 37R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {37R:C -> 28R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {28R:G -> 38R:G: outward } 0 13 {38R:G -> 28R:G: outward } 0 14 {29R:A -> 36R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {36R:U -> 29R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {36R:U -> 37R:C: adjacent_5p upward } 0 17 {37R:C -> 36R:U: adjacent_3p downward } 0 18 {37R:C -> 38R:G: adjacent_5p } 0 19 {38R:G -> 37R:C: adjacent_3p } 0 20 {38R:G -> 39R:G: adjacent_5p upward } 0 21 {39R:G -> 38R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 27R:C 0 1 28R:G 0 2 29R:A 0 3 30R:G 0 4 35R:A 0 5 36R:U 0 6 37R:C 0 7 38R:G 0 [Edges] 0 {27R:C -> 28R:G: adjacent_5p } 0 1 {28R:G -> 27R:C: adjacent_3p } 0 2 {27R:C -> 38R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {38R:G -> 27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {28R:G -> 29R:A: adjacent_5p upward } 0 5 {29R:A -> 28R:G: adjacent_3p downward } 0 6 {28R:G -> 37R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {37R:C -> 28R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {28R:G -> 38R:G: outward } 0 9 {38R:G -> 28R:G: outward } 0 10 {29R:A -> 30R:G: adjacent_5p upward } 0 11 {30R:G -> 29R:A: adjacent_3p downward } 0 12 {29R:A -> 36R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {36R:U -> 29R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {30R:G -> 35R:A: pairing antiparallel cis one_hbond Bs/Ww } 0 15 {35R:A -> 30R:G: pairing antiparallel cis one_hbond Ww/Bs } 0 16 {35R:A -> 36R:U: adjacent_5p } 0 17 {36R:U -> 35R:A: adjacent_3p } 0 18 {36R:U -> 37R:C: adjacent_5p upward } 0 19 {37R:C -> 36R:U: adjacent_3p downward } 0 20 {37R:C -> 38R:G: adjacent_5p } 0 21 {38R:G -> 37R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 Q1R:C 0 1 Q2R:U 0 2 Q3R:G 0 3 Q4R:G 0 4 Q18R:C 0 5 Q19R:C 0 6 Q20R:A 0 7 Q21R:G 0 [Edges] 0 {Q1R:C -> Q2R:U: adjacent_5p upward } 0 1 {Q2R:U -> Q1R:C: adjacent_3p downward } 0 2 {Q1R:C -> Q21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {Q21R:G -> Q1R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {Q2R:U -> Q3R:G: adjacent_5p } 0 5 {Q3R:G -> Q2R:U: adjacent_3p } 0 6 {Q2R:U -> Q20R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {Q20R:A -> Q2R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {Q3R:G -> Q4R:G: adjacent_5p upward } 0 9 {Q4R:G -> Q3R:G: adjacent_3p downward } 0 10 {Q3R:G -> Q19R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {Q19R:C -> Q3R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {Q3R:G -> Q20R:A: outward } 0 13 {Q20R:A -> Q3R:G: outward } 0 14 {Q4R:G -> Q18R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {Q18R:C -> Q4R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {Q18R:C -> Q19R:C: adjacent_5p } 0 17 {Q19R:C -> Q18R:C: adjacent_3p } 0 18 {Q19R:C -> Q20R:A: adjacent_5p upward } 0 19 {Q20R:A -> Q19R:C: adjacent_3p downward } 0 20 {Q20R:A -> Q21R:G: adjacent_5p upward } 0 21 {Q21R:G -> Q20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 Q2R:U 0 1 Q3R:G 0 2 Q4R:G 0 3 Q5R:U 0 4 Q17R:U 0 5 Q18R:C 0 6 Q19R:C 0 7 Q20R:A 0 [Edges] 0 {Q2R:U -> Q3R:G: adjacent_5p } 0 1 {Q3R:G -> Q2R:U: adjacent_3p } 0 2 {Q2R:U -> Q20R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {Q20R:A -> Q2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {Q3R:G -> Q4R:G: adjacent_5p upward } 0 5 {Q4R:G -> Q3R:G: adjacent_3p downward } 0 6 {Q3R:G -> Q19R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {Q19R:C -> Q3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {Q3R:G -> Q20R:A: outward } 0 9 {Q20R:A -> Q3R:G: outward } 0 10 {Q4R:G -> Q5R:U: adjacent_5p upward } 0 11 {Q5R:U -> Q4R:G: adjacent_3p downward } 0 12 {Q4R:G -> Q18R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {Q18R:C -> Q4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {Q5R:U -> Q17R:U: pairing antiparallel cis XVI Ws/Ww } 0 15 {Q17R:U -> Q5R:U: pairing antiparallel cis XVI Ww/Ws } 0 16 {Q17R:U -> Q18R:C: adjacent_5p upward } 0 17 {Q18R:C -> Q17R:U: adjacent_3p downward } 0 18 {Q18R:C -> Q19R:C: adjacent_5p } 0 19 {Q19R:C -> Q18R:C: adjacent_3p } 0 20 {Q19R:C -> Q20R:A: adjacent_5p upward } 0 21 {Q20R:A -> Q19R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 R1R:C 0 1 R2R:U 0 2 R3R:G 0 3 R4R:G 0 4 R18R:C 0 5 R19R:C 0 6 R20R:A 0 7 R21R:G 0 [Edges] 0 {R1R:C -> R2R:U: adjacent_5p upward } 0 1 {R2R:U -> R1R:C: adjacent_3p downward } 0 2 {R1R:C -> R21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R21R:G -> R1R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R2R:U -> R3R:G: adjacent_5p upward } 0 5 {R3R:G -> R2R:U: adjacent_3p downward } 0 6 {R2R:U -> R20R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {R20R:A -> R2R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {R3R:G -> R4R:G: adjacent_5p upward } 0 9 {R4R:G -> R3R:G: adjacent_3p downward } 0 10 {R3R:G -> R19R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {R19R:C -> R3R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {R3R:G -> R20R:A: outward } 0 13 {R20R:A -> R3R:G: outward } 0 14 {R4R:G -> R18R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {R18R:C -> R4R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {R18R:C -> R19R:C: adjacent_5p } 0 17 {R19R:C -> R18R:C: adjacent_3p } 0 18 {R19R:C -> R20R:A: adjacent_5p upward } 0 19 {R20R:A -> R19R:C: adjacent_3p downward } 0 20 {R20R:A -> R21R:G: adjacent_5p upward } 0 21 {R21R:G -> R20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 R2R:U 0 1 R3R:G 0 2 R4R:G 0 3 R5R:U 0 4 R17R:U 0 5 R18R:C 0 6 R19R:C 0 7 R20R:A 0 [Edges] 0 {R2R:U -> R3R:G: adjacent_5p upward } 0 1 {R3R:G -> R2R:U: adjacent_3p downward } 0 2 {R2R:U -> R20R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {R20R:A -> R2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {R3R:G -> R4R:G: adjacent_5p upward } 0 5 {R4R:G -> R3R:G: adjacent_3p downward } 0 6 {R3R:G -> R19R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {R19R:C -> R3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {R3R:G -> R20R:A: outward } 0 9 {R20R:A -> R3R:G: outward } 0 10 {R4R:G -> R5R:U: adjacent_5p upward } 0 11 {R5R:U -> R4R:G: adjacent_3p downward } 0 12 {R4R:G -> R18R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {R18R:C -> R4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {R5R:U -> R17R:U: pairing antiparallel cis XVI Ws/Ww } 0 15 {R17R:U -> R5R:U: pairing antiparallel cis XVI Ww/Ws } 0 16 {R17R:U -> R18R:C: adjacent_5p upward } 0 17 {R18R:C -> R17R:U: adjacent_3p downward } 0 18 {R18R:C -> R19R:C: adjacent_5p } 0 19 {R19R:C -> R18R:C: adjacent_3p } 0 20 {R19R:C -> R20R:A: adjacent_5p upward } 0 21 {R20R:A -> R19R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 2R:A 0 1 3R:C 0 2 4R:A 0 3 5R:G 0 4 14R:U 0 5 15R:U 0 6 16R:G 0 7 17R:U 0 [Edges] 0 {2R:A -> 3R:C: adjacent_5p upward } 0 1 {3R:C -> 2R:A: adjacent_3p downward } 0 2 {2R:A -> 17R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {17R:U -> 2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {3R:C -> 4R:A: adjacent_5p upward } 0 5 {4R:A -> 3R:C: adjacent_3p downward } 0 6 {3R:C -> 16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {16R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:A -> 5R:G: adjacent_5p upward } 0 9 {5R:G -> 4R:A: adjacent_3p downward } 0 10 {4R:A -> 15R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {15R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {4R:A -> 16R:G: outward } 0 13 {16R:G -> 4R:A: outward } 0 14 {5R:G -> 14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {14R:U -> 5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {14R:U -> 15R:U: adjacent_5p upward } 0 17 {15R:U -> 14R:U: adjacent_3p downward } 0 18 {15R:U -> 16R:G: adjacent_5p upward } 0 19 {16R:G -> 15R:U: adjacent_3p downward } 0 20 {16R:G -> 17R:U: adjacent_5p upward } 0 21 {17R:U -> 16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 3R:C 0 1 4R:A 0 2 5R:G 0 3 6R:G 0 4 13R:U 0 5 14R:U 0 6 15R:U 0 7 16R:G 0 [Edges] 0 {3R:C -> 4R:A: adjacent_5p upward } 0 1 {4R:A -> 3R:C: adjacent_3p downward } 0 2 {3R:C -> 16R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {16R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:A -> 5R:G: adjacent_5p upward } 0 5 {5R:G -> 4R:A: adjacent_3p downward } 0 6 {4R:A -> 15R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {15R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {4R:A -> 16R:G: outward } 0 9 {16R:G -> 4R:A: outward } 0 10 {5R:G -> 6R:G: adjacent_5p upward } 0 11 {6R:G -> 5R:G: adjacent_3p downward } 0 12 {5R:G -> 14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {14R:U -> 5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {6R:G -> 13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {13R:U -> 6R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {13R:U -> 14R:U: adjacent_5p upward } 0 17 {14R:U -> 13R:U: adjacent_3p downward } 0 18 {14R:U -> 15R:U: adjacent_5p upward } 0 19 {15R:U -> 14R:U: adjacent_3p downward } 0 20 {15R:U -> 16R:G: adjacent_5p upward } 0 21 {16R:G -> 15R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 4R:A 0 1 5R:G 0 2 6R:G 0 3 7R:G 0 4 12R:C 0 5 13R:U 0 6 14R:U 0 7 15R:U 0 [Edges] 0 {4R:A -> 5R:G: adjacent_5p upward } 0 1 {5R:G -> 4R:A: adjacent_3p downward } 0 2 {4R:A -> 15R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {15R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {5R:G -> 6R:G: adjacent_5p upward } 0 5 {6R:G -> 5R:G: adjacent_3p downward } 0 6 {5R:G -> 14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {14R:U -> 5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {6R:G -> 7R:G: adjacent_5p upward } 0 9 {7R:G -> 6R:G: adjacent_3p downward } 0 10 {6R:G -> 13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {13R:U -> 6R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {7R:G -> 12R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {12R:C -> 7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {12R:C -> 13R:U: adjacent_5p upward } 0 15 {13R:U -> 12R:C: adjacent_3p downward } 0 16 {13R:U -> 14R:U: adjacent_5p upward } 0 17 {14R:U -> 13R:U: adjacent_3p downward } 0 18 {14R:U -> 15R:U: adjacent_5p upward } 0 19 {15R:U -> 14R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 5R:G 0 1 6R:G 0 2 7R:G 0 3 8R:G 0 4 11R:A 0 5 12R:C 0 6 13R:U 0 7 14R:U 0 [Edges] 0 {5R:G -> 6R:G: adjacent_5p upward } 0 1 {6R:G -> 5R:G: adjacent_3p downward } 0 2 {5R:G -> 14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {14R:U -> 5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {6R:G -> 7R:G: adjacent_5p upward } 0 5 {7R:G -> 6R:G: adjacent_3p downward } 0 6 {6R:G -> 13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {13R:U -> 6R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {7R:G -> 8R:G: adjacent_5p upward } 0 9 {8R:G -> 7R:G: adjacent_3p downward } 0 10 {7R:G -> 12R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {12R:C -> 7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {8R:G -> 11R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {11R:A -> 8R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {11R:A -> 12R:C: adjacent_5p upward } 0 15 {12R:C -> 11R:A: adjacent_3p downward } 0 16 {12R:C -> 13R:U: adjacent_5p upward } 0 17 {13R:U -> 12R:C: adjacent_3p downward } 0 18 {13R:U -> 14R:U: adjacent_5p upward } 0 19 {14R:U -> 13R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:A 0 3 A5R:A 0 4 B8R:U 0 5 B9R:U 0 6 B10R:G 0 7 B11R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B11R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B10R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B9R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A4R:A -> B10R:G: outward } 0 13 {B10R:G -> A4R:A: outward } 0 14 {A5R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B8R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B8R:U -> B9R:U: adjacent_5p } 0 17 {B9R:U -> B8R:U: adjacent_3p } 0 18 {B9R:U -> B10R:G: adjacent_5p } 0 19 {B10R:G -> B9R:U: adjacent_3p } 0 20 {B10R:G -> B11R:C: adjacent_5p upward } 0 21 {B11R:C -> B10R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:A 0 2 A5R:A 0 3 A6R:A 0 4 B7R:U 0 5 B8R:U 0 6 B9R:U 0 7 B10R:G 0 [Edges] 0 {A3R:C -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B10R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B9R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> B10R:G: outward } 0 9 {B10R:G -> A4R:A: outward } 0 10 {A5R:A -> A6R:A: adjacent_5p upward } 0 11 {A6R:A -> A5R:A: adjacent_3p downward } 0 12 {A5R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B8R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A6R:A -> B7R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B7R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B7R:U -> B8R:U: adjacent_5p } 0 17 {B8R:U -> B7R:U: adjacent_3p } 0 18 {B8R:U -> B9R:U: adjacent_5p } 0 19 {B9R:U -> B8R:U: adjacent_3p } 0 20 {B9R:U -> B10R:G: adjacent_5p } 0 21 {B10R:G -> B9R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:A 0 2 A6R:A 0 3 A7R:U 0 4 B6R:A 0 5 B7R:U 0 6 B8R:U 0 7 B9R:U 0 [Edges] 0 {A4R:A -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B9R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:A -> A6R:A: adjacent_5p upward } 0 5 {A6R:A -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B8R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:A -> A7R:U: adjacent_5p upward } 0 9 {A7R:U -> A6R:A: adjacent_3p downward } 0 10 {A6R:A -> B7R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B7R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B6R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B6R:A -> B7R:U: adjacent_5p upward } 0 15 {B7R:U -> B6R:A: adjacent_3p downward } 0 16 {B7R:U -> B8R:U: adjacent_5p } 0 17 {B8R:U -> B7R:U: adjacent_3p } 0 18 {B8R:U -> B9R:U: adjacent_5p } 0 19 {B9R:U -> B8R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:A 0 2 A7R:U 0 3 A8R:U 0 4 B5R:A 0 5 B6R:A 0 6 B7R:U 0 7 B8R:U 0 [Edges] 0 {A5R:A -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B8R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:A -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> B7R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B7R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:U -> A8R:U: adjacent_5p upward } 0 9 {A8R:U -> A7R:U: adjacent_3p downward } 0 10 {A7R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B6R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A8R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B5R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B5R:A -> B6R:A: adjacent_5p upward } 0 15 {B6R:A -> B5R:A: adjacent_3p downward } 0 16 {B6R:A -> B7R:U: adjacent_5p upward } 0 17 {B7R:U -> B6R:A: adjacent_3p downward } 0 18 {B7R:U -> B8R:U: adjacent_5p } 0 19 {B8R:U -> B7R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:U 0 2 A8R:U 0 3 A9R:U 0 4 B4R:A 0 5 B5R:A 0 6 B6R:A 0 7 B7R:U 0 [Edges] 0 {A6R:A -> A7R:U: adjacent_5p upward } 0 1 {A7R:U -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> B7R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B7R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:U -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:U: adjacent_3p downward } 0 6 {A7R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B6R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A8R:U -> A9R:U: adjacent_5p upward } 0 9 {A9R:U -> A8R:U: adjacent_3p downward } 0 10 {A8R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B5R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B4R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B4R:A -> B5R:A: adjacent_5p upward } 0 15 {B5R:A -> B4R:A: adjacent_3p downward } 0 16 {B5R:A -> B6R:A: adjacent_5p upward } 0 17 {B6R:A -> B5R:A: adjacent_3p downward } 0 18 {B6R:A -> B7R:U: adjacent_5p upward } 0 19 {B7R:U -> B6R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:U 0 1 A8R:U 0 2 A9R:U 0 3 A10R:G 0 4 B3R:C 0 5 B4R:A 0 6 B5R:A 0 7 B6R:A 0 [Edges] 0 {A7R:U -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:U: adjacent_3p downward } 0 2 {A7R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B6R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A8R:U -> A9R:U: adjacent_5p upward } 0 5 {A9R:U -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B5R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:U -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:U: adjacent_3p downward } 0 10 {A9R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B4R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A10R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B3R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A10R:G -> B4R:A: outward } 0 15 {B4R:A -> A10R:G: outward } 0 16 {B3R:C -> B4R:A: adjacent_5p upward } 0 17 {B4R:A -> B3R:C: adjacent_3p downward } 0 18 {B4R:A -> B5R:A: adjacent_5p upward } 0 19 {B5R:A -> B4R:A: adjacent_3p downward } 0 20 {B5R:A -> B6R:A: adjacent_5p upward } 0 21 {B6R:A -> B5R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:U 0 2 A10R:G 0 3 A11R:C 0 4 B2R:G 0 5 B3R:C 0 6 B4R:A 0 7 B5R:A 0 [Edges] 0 {A8R:U -> A9R:U: adjacent_5p upward } 0 1 {A9R:U -> A8R:U: adjacent_3p downward } 0 2 {A8R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B5R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:U -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:U: adjacent_3p downward } 0 6 {A9R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B4R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A10R:G -> A11R:C: adjacent_5p upward } 0 9 {A11R:C -> A10R:G: adjacent_3p downward } 0 10 {A10R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B3R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:G -> B4R:A: outward } 0 13 {B4R:A -> A10R:G: outward } 0 14 {A11R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B2R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B2R:G -> B3R:C: adjacent_5p upward } 0 17 {B3R:C -> B2R:G: adjacent_3p downward } 0 18 {B3R:C -> B4R:A: adjacent_5p upward } 0 19 {B4R:A -> B3R:C: adjacent_3p downward } 0 20 {B4R:A -> B5R:A: adjacent_5p upward } 0 21 {B5R:A -> B4R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:C 0 2 4R:A 0 3 5R:C 0 4 15R:G 0 5 16R:U 0 6 17R:G 0 7 18R:C 0 [Edges] 0 {2R:G -> 3R:C: adjacent_5p upward } 0 1 {3R:C -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {18R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:C -> 4R:A: adjacent_5p upward } 0 5 {4R:A -> 3R:C: adjacent_3p downward } 0 6 {3R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {17R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:A -> 5R:C: adjacent_5p upward } 0 9 {5R:C -> 4R:A: adjacent_3p downward } 0 10 {4R:A -> 16R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {16R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {4R:A -> 17R:G: outward } 0 13 {17R:G -> 4R:A: outward } 0 14 {5R:C -> 15R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {15R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {15R:G -> 16R:U: adjacent_5p upward } 0 17 {16R:U -> 15R:G: adjacent_3p downward } 0 18 {16R:U -> 17R:G: adjacent_5p upward } 0 19 {17R:G -> 16R:U: adjacent_3p downward } 0 20 {17R:G -> 18R:C: adjacent_5p upward } 0 21 {18R:C -> 17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 3R:C 0 1 4R:A 0 2 5R:C 0 3 6R:C 0 4 14R:G 0 5 15R:G 0 6 16R:U 0 7 17R:G 0 [Edges] 0 {3R:C -> 4R:A: adjacent_5p upward } 0 1 {4R:A -> 3R:C: adjacent_3p downward } 0 2 {3R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {17R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:A -> 5R:C: adjacent_5p upward } 0 5 {5R:C -> 4R:A: adjacent_3p downward } 0 6 {4R:A -> 16R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {16R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {4R:A -> 17R:G: outward } 0 9 {17R:G -> 4R:A: outward } 0 10 {5R:C -> 6R:C: adjacent_5p upward } 0 11 {6R:C -> 5R:C: adjacent_3p downward } 0 12 {5R:C -> 15R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {15R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {6R:C -> 14R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {14R:G -> 6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {14R:G -> 15R:G: adjacent_5p upward } 0 17 {15R:G -> 14R:G: adjacent_3p downward } 0 18 {15R:G -> 16R:U: adjacent_5p upward } 0 19 {16R:U -> 15R:G: adjacent_3p downward } 0 20 {16R:U -> 17R:G: adjacent_5p upward } 0 21 {17R:G -> 16R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 4R:A 0 1 5R:C 0 2 6R:C 0 3 7R:U 0 4 13R:C 0 5 14R:G 0 6 15R:G 0 7 16R:U 0 [Edges] 0 {4R:A -> 5R:C: adjacent_5p upward } 0 1 {5R:C -> 4R:A: adjacent_3p downward } 0 2 {4R:A -> 16R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {16R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {5R:C -> 6R:C: adjacent_5p upward } 0 5 {6R:C -> 5R:C: adjacent_3p downward } 0 6 {5R:C -> 15R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {15R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {6R:C -> 7R:U: adjacent_5p upward } 0 9 {7R:U -> 6R:C: adjacent_3p downward } 0 10 {6R:C -> 14R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {14R:G -> 6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {7R:U -> 13R:C: pairing antiparallel cis one_hbond 100 Ws/Bh } 0 13 {13R:C -> 7R:U: pairing antiparallel cis one_hbond 100 Bh/Ws } 0 14 {13R:C -> 14R:G: adjacent_5p upward } 0 15 {14R:G -> 13R:C: adjacent_3p downward } 0 16 {14R:G -> 15R:G: adjacent_5p upward } 0 17 {15R:G -> 14R:G: adjacent_3p downward } 0 18 {15R:G -> 16R:U: adjacent_5p upward } 0 19 {16R:U -> 15R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:G 0 2 4R:A 0 3 5R:C 0 4 12R:G 0 5 13R:U 0 6 14R:C 0 7 15R:C 0 [Edges] 0 {2R:G -> 3R:G: adjacent_5p upward } 0 1 {3R:G -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {15R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:G -> 4R:A: adjacent_5p upward } 0 5 {4R:A -> 3R:G: adjacent_3p downward } 0 6 {3R:G -> 14R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {14R:C -> 3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:A -> 5R:C: adjacent_5p upward } 0 9 {5R:C -> 4R:A: adjacent_3p downward } 0 10 {4R:A -> 13R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {13R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {5R:C -> 12R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {12R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {12R:G -> 13R:U: adjacent_5p upward } 0 15 {13R:U -> 12R:G: adjacent_3p downward } 0 16 {13R:U -> 14R:C: adjacent_5p upward } 0 17 {14R:C -> 13R:U: adjacent_3p downward } 0 18 {14R:C -> 15R:C: adjacent_5p upward } 0 19 {15R:C -> 14R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 3R:G 0 1 4R:A 0 2 5R:C 0 3 6R:C 0 4 11R:G 0 5 12R:G 0 6 13R:U 0 7 14R:C 0 [Edges] 0 {3R:G -> 4R:A: adjacent_5p upward } 0 1 {4R:A -> 3R:G: adjacent_3p downward } 0 2 {3R:G -> 14R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {14R:C -> 3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:A -> 5R:C: adjacent_5p upward } 0 5 {5R:C -> 4R:A: adjacent_3p downward } 0 6 {4R:A -> 13R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {13R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {5R:C -> 6R:C: adjacent_5p } 0 9 {6R:C -> 5R:C: adjacent_3p } 0 10 {5R:C -> 12R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {12R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {6R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {11R:G -> 6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {11R:G -> 12R:G: adjacent_5p upward } 0 15 {12R:G -> 11R:G: adjacent_3p downward } 0 16 {12R:G -> 13R:U: adjacent_5p upward } 0 17 {13R:U -> 12R:G: adjacent_3p downward } 0 18 {13R:U -> 14R:C: adjacent_5p upward } 0 19 {14R:C -> 13R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 4R:A 0 1 5R:C 0 2 6R:C 0 3 7R:A 0 4 10R:A 0 5 11R:G 0 6 12R:G 0 7 13R:U 0 [Edges] 0 {4R:A -> 5R:C: adjacent_5p upward } 0 1 {5R:C -> 4R:A: adjacent_3p downward } 0 2 {4R:A -> 13R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {13R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {5R:C -> 6R:C: adjacent_5p } 0 5 {6R:C -> 5R:C: adjacent_3p } 0 6 {5R:C -> 12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {12R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {6R:C -> 7R:A: adjacent_5p } 0 9 {7R:A -> 6R:C: adjacent_3p } 0 10 {6R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {11R:G -> 6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {7R:A -> 10R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 13 {10R:A -> 7R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 14 {10R:A -> 11R:G: adjacent_5p upward } 0 15 {11R:G -> 10R:A: adjacent_3p downward } 0 16 {11R:G -> 12R:G: adjacent_5p upward } 0 17 {12R:G -> 11R:G: adjacent_3p downward } 0 18 {12R:G -> 13R:U: adjacent_5p upward } 0 19 {13R:U -> 12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 2R:C 0 1 3R:U 0 2 4R:C 0 3 5R:C 0 4 10R:G 0 5 11R:G 0 6 12R:A 0 7 13R:G 0 [Edges] 0 {2R:C -> 3R:U: adjacent_5p upward } 0 1 {3R:U -> 2R:C: adjacent_3p downward } 0 2 {2R:C -> 13R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {13R:G -> 2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:U -> 4R:C: adjacent_5p upward } 0 5 {4R:C -> 3R:U: adjacent_3p downward } 0 6 {3R:U -> 12R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {12R:A -> 3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {4R:C -> 5R:C: adjacent_5p upward } 0 9 {5R:C -> 4R:C: adjacent_3p downward } 0 10 {4R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {11R:G -> 4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {5R:C -> 10R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {10R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {10R:G -> 11R:G: adjacent_5p upward } 0 15 {11R:G -> 10R:G: adjacent_3p downward } 0 16 {11R:G -> 12R:A: adjacent_5p upward } 0 17 {12R:A -> 11R:G: adjacent_3p downward } 0 18 {12R:A -> 13R:G: adjacent_5p upward } 0 19 {13R:G -> 12R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B25R:G 0 1 B26R:U 0 2 B27R:C 0 3 B28R:C 0 4 B35R:G 0 5 B36R:G 0 6 B37R:A 0 7 B38R:C 0 [Edges] 0 {B25R:G -> B26R:U: adjacent_5p } 0 1 {B26R:U -> B25R:G: adjacent_3p } 0 2 {B25R:G -> B38R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {B38R:C -> B25R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {B26R:U -> B27R:C: adjacent_5p upward } 0 5 {B27R:C -> B26R:U: adjacent_3p downward } 0 6 {B26R:U -> B37R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B37R:A -> B26R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B27R:C -> B28R:C: adjacent_5p } 0 9 {B28R:C -> B27R:C: adjacent_3p } 0 10 {B28R:C -> B35R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B35R:G -> B28R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B35R:G -> B36R:G: adjacent_5p upward } 0 13 {B36R:G -> B35R:G: adjacent_3p downward } 0 14 {B36R:G -> B37R:A: adjacent_5p } 0 15 {B37R:A -> B36R:G: adjacent_3p } 0 16 {B37R:A -> B38R:C: adjacent_5p upward } 0 17 {B38R:C -> B37R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 R1R:G 0 1 R2R:G 0 2 R3R:C 0 3 R4R:G 0 4 R69R:C 0 5 R70R:G 0 6 R71R:C 0 7 R72R:C 0 [Edges] 0 {R1R:G -> R2R:G: adjacent_5p upward } 0 1 {R2R:G -> R1R:G: adjacent_3p downward } 0 2 {R1R:G -> R72R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {R72R:C -> R1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {R2R:G -> R3R:C: adjacent_5p upward } 0 5 {R3R:C -> R2R:G: adjacent_3p downward } 0 6 {R2R:G -> R71R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {R71R:C -> R2R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {R3R:C -> R4R:G: adjacent_5p } 0 9 {R4R:G -> R3R:C: adjacent_3p } 0 10 {R3R:C -> R70R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {R70R:G -> R3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {R4R:G -> R69R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {R69R:C -> R4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {R4R:G -> R70R:G: outward } 0 15 {R70R:G -> R4R:G: outward } 0 16 {R69R:C -> R70R:G: adjacent_5p upward } 0 17 {R70R:G -> R69R:C: adjacent_3p downward } 0 18 {R70R:G -> R71R:C: adjacent_5p upward } 0 19 {R71R:C -> R70R:G: adjacent_3p downward } 0 20 {R71R:C -> R72R:C: adjacent_5p } 0 21 {R72R:C -> R71R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 R2R:G 0 1 R3R:C 0 2 R4R:G 0 3 R5R:C 0 4 R68R:G 0 5 R69R:C 0 6 R70R:G 0 7 R71R:C 0 [Edges] 0 {R2R:G -> R3R:C: adjacent_5p upward } 0 1 {R3R:C -> R2R:G: adjacent_3p downward } 0 2 {R2R:G -> R71R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {R71R:C -> R2R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {R3R:C -> R4R:G: adjacent_5p } 0 5 {R4R:G -> R3R:C: adjacent_3p } 0 6 {R3R:C -> R70R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R70R:G -> R3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R4R:G -> R5R:C: adjacent_5p upward } 0 9 {R5R:C -> R4R:G: adjacent_3p downward } 0 10 {R4R:G -> R69R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {R69R:C -> R4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {R4R:G -> R70R:G: outward } 0 13 {R70R:G -> R4R:G: outward } 0 14 {R5R:C -> R68R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {R68R:G -> R5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {R68R:G -> R69R:C: adjacent_5p upward } 0 17 {R69R:C -> R68R:G: adjacent_3p downward } 0 18 {R69R:C -> R70R:G: adjacent_5p upward } 0 19 {R70R:G -> R69R:C: adjacent_3p downward } 0 20 {R70R:G -> R71R:C: adjacent_5p upward } 0 21 {R71R:C -> R70R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 R3R:C 0 1 R4R:G 0 2 R5R:C 0 3 R6R:G 0 4 R67R:C 0 5 R68R:G 0 6 R69R:C 0 7 R70R:G 0 [Edges] 0 {R3R:C -> R4R:G: adjacent_5p } 0 1 {R4R:G -> R3R:C: adjacent_3p } 0 2 {R3R:C -> R70R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R70R:G -> R3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R4R:G -> R5R:C: adjacent_5p upward } 0 5 {R5R:C -> R4R:G: adjacent_3p downward } 0 6 {R4R:G -> R69R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {R69R:C -> R4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {R4R:G -> R70R:G: outward } 0 9 {R70R:G -> R4R:G: outward } 0 10 {R5R:C -> R6R:G: adjacent_5p } 0 11 {R6R:G -> R5R:C: adjacent_3p } 0 12 {R5R:C -> R68R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {R68R:G -> R5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {R6R:G -> R67R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {R67R:C -> R6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {R6R:G -> R68R:G: outward } 0 17 {R68R:G -> R6R:G: outward } 0 18 {R67R:C -> R68R:G: adjacent_5p upward } 0 19 {R68R:G -> R67R:C: adjacent_3p downward } 0 20 {R68R:G -> R69R:C: adjacent_5p upward } 0 21 {R69R:C -> R68R:G: adjacent_3p downward } 0 22 {R69R:C -> R70R:G: adjacent_5p upward } 0 23 {R70R:G -> R69R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 R4R:G 0 1 R5R:C 0 2 R6R:G 0 3 R7R:U 0 4 R66R:A 0 5 R67R:C 0 6 R68R:G 0 7 R69R:C 0 [Edges] 0 {R4R:G -> R5R:C: adjacent_5p upward } 0 1 {R5R:C -> R4R:G: adjacent_3p downward } 0 2 {R4R:G -> R69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {R69R:C -> R4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {R5R:C -> R6R:G: adjacent_5p } 0 5 {R6R:G -> R5R:C: adjacent_3p } 0 6 {R5R:C -> R68R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R68R:G -> R5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R6R:G -> R7R:U: adjacent_5p } 0 9 {R7R:U -> R6R:G: adjacent_3p } 0 10 {R6R:G -> R67R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {R67R:C -> R6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {R6R:G -> R68R:G: outward } 0 13 {R68R:G -> R6R:G: outward } 0 14 {R7R:U -> R66R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {R66R:A -> R7R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {R66R:A -> R67R:C: adjacent_5p upward } 0 17 {R67R:C -> R66R:A: adjacent_3p downward } 0 18 {R67R:C -> R68R:G: adjacent_5p upward } 0 19 {R68R:G -> R67R:C: adjacent_3p downward } 0 20 {R68R:G -> R69R:C: adjacent_5p upward } 0 21 {R69R:C -> R68R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 R27R:G 0 1 R28R:C 0 2 R29R:G 0 3 R30R:G 0 4 R40R:C 0 5 R41R:C 0 6 R42R:G 0 7 R43R:U 0 [Edges] 0 {R27R:G -> R28R:C: adjacent_5p upward } 0 1 {R28R:C -> R27R:G: adjacent_3p downward } 0 2 {R27R:G -> R43R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {R43R:U -> R27R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {R28R:C -> R29R:G: adjacent_5p upward } 0 5 {R29R:G -> R28R:C: adjacent_3p downward } 0 6 {R28R:C -> R42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R42R:G -> R28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R29R:G -> R30R:G: adjacent_5p upward } 0 9 {R30R:G -> R29R:G: adjacent_3p downward } 0 10 {R29R:G -> R41R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {R41R:C -> R29R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {R29R:G -> R42R:G: outward } 0 13 {R42R:G -> R29R:G: outward } 0 14 {R30R:G -> R40R:C: pairing antiparallel cis one_hbond Ws/Ww } 0 15 {R40R:C -> R30R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 16 {R40R:C -> R41R:C: adjacent_5p } 0 17 {R41R:C -> R40R:C: adjacent_3p } 0 18 {R41R:C -> R42R:G: adjacent_5p upward } 0 19 {R42R:G -> R41R:C: adjacent_3p downward } 0 20 {R42R:G -> R43R:U: adjacent_5p upward } 0 21 {R43R:U -> R42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 R49R:U 0 1 R50R:C 0 2 R51R:C 0 3 R52R:G 0 4 R62R:C 0 5 R63R:G 0 6 R64R:G 0 7 R65R:A 0 [Edges] 0 {R49R:U -> R50R:C: adjacent_5p upward } 0 1 {R50R:C -> R49R:U: adjacent_3p downward } 0 2 {R49R:U -> R65R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {R65R:A -> R49R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {R50R:C -> R51R:C: adjacent_5p upward } 0 5 {R51R:C -> R50R:C: adjacent_3p downward } 0 6 {R50R:C -> R64R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R64R:G -> R50R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R51R:C -> R52R:G: adjacent_5p } 0 9 {R52R:G -> R51R:C: adjacent_3p } 0 10 {R51R:C -> R63R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {R63R:G -> R51R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {R51R:C -> R64R:G: outward } 0 13 {R64R:G -> R51R:C: outward } 0 14 {R52R:G -> R62R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {R62R:C -> R52R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {R52R:G -> R63R:G: outward } 0 17 {R63R:G -> R52R:G: outward } 0 18 {R62R:C -> R63R:G: adjacent_5p } 0 19 {R63R:G -> R62R:C: adjacent_3p } 0 20 {R63R:G -> R64R:G: adjacent_5p upward } 0 21 {R64R:G -> R63R:G: adjacent_3p downward } 0 22 {R64R:G -> R65R:A: adjacent_5p upward } 0 23 {R65R:A -> R64R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 R50R:C 0 1 R51R:C 0 2 R52R:G 0 3 R53R:G 0 4 R61R:C 0 5 R62R:C 0 6 R63R:G 0 7 R64R:G 0 [Edges] 0 {R50R:C -> R51R:C: adjacent_5p upward } 0 1 {R51R:C -> R50R:C: adjacent_3p downward } 0 2 {R50R:C -> R64R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R64R:G -> R50R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R51R:C -> R52R:G: adjacent_5p } 0 5 {R52R:G -> R51R:C: adjacent_3p } 0 6 {R51R:C -> R63R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R63R:G -> R51R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R51R:C -> R64R:G: outward } 0 9 {R64R:G -> R51R:C: outward } 0 10 {R52R:G -> R53R:G: adjacent_5p upward } 0 11 {R53R:G -> R52R:G: adjacent_3p downward } 0 12 {R52R:G -> R62R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {R62R:C -> R52R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {R52R:G -> R63R:G: outward } 0 15 {R63R:G -> R52R:G: outward } 0 16 {R53R:G -> R61R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {R61R:C -> R53R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {R53R:G -> R62R:C: outward } 0 19 {R62R:C -> R53R:G: outward } 0 20 {R61R:C -> R62R:C: adjacent_5p } 0 21 {R62R:C -> R61R:C: adjacent_3p } 0 22 {R62R:C -> R63R:G: adjacent_5p } 0 23 {R63R:G -> R62R:C: adjacent_3p } 0 24 {R63R:G -> R64R:G: adjacent_5p upward } 0 25 {R64R:G -> R63R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 18 . . 4 . . . 17 . 20 . . 5 . . 13 19 21 . 22 . 6 . 7 15 . . 23 . 24 7 3 9 . . . . 25 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:G 0 3 A5R:C 0 4 A34R:G 0 5 A35R:C 0 6 A36R:A 0 7 A37R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A37R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A37R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A36R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A36R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A35R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A35R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A36R:A: outward } 0 13 {A36R:A -> A4R:G: outward } 0 14 {A5R:C -> A34R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A34R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A34R:G -> A35R:C: adjacent_5p upward } 0 17 {A35R:C -> A34R:G: adjacent_3p downward } 0 18 {A35R:C -> A36R:A: adjacent_5p } 0 19 {A36R:A -> A35R:C: adjacent_3p } 0 20 {A36R:A -> A37R:C: adjacent_5p upward } 0 21 {A37R:C -> A36R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:C 0 2 A6R:A 0 3 A7R:G 0 4 A32R:A 0 5 A33R:C 0 6 A34R:G 0 7 A35R:C 0 [Edges] 0 {A4R:G -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A35R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A35R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:A: adjacent_5p upward } 0 5 {A6R:A -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> A34R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A34R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:A -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:A: adjacent_3p downward } 0 10 {A7R:G -> A32R:A: pairing antiparallel trans one_hbond 63 Ss/Hw } 0 11 {A32R:A -> A7R:G: pairing antiparallel trans one_hbond 63 Hw/Ss } 0 12 {A32R:A -> A33R:C: adjacent_5p upward } 0 13 {A33R:C -> A32R:A: adjacent_3p downward } 0 14 {A33R:C -> A34R:G: adjacent_5p } 0 15 {A34R:G -> A33R:C: adjacent_3p } 0 16 {A34R:G -> A35R:C: adjacent_5p upward } 0 17 {A35R:C -> A34R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A10R:A 0 1 A11R:C 0 2 A12R:A 0 3 A13R:G 0 4 A24R:C 0 5 A25R:G 0 6 A26R:U 0 7 A27R:A 0 [Edges] 0 {A10R:A -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:A: adjacent_3p downward } 0 2 {A10R:A -> A27R:A: pairing antiparallel trans one_hbond 40 Bh/Ss } 0 3 {A27R:A -> A10R:A: pairing antiparallel trans one_hbond 40 Ss/Bh } 0 4 {A11R:C -> A12R:A: adjacent_5p } 0 5 {A12R:A -> A11R:C: adjacent_3p } 0 6 {A11R:C -> A26R:U: pairing antiparallel cis one_hbond 100 Wh/Ws } 0 7 {A26R:U -> A11R:C: pairing antiparallel cis one_hbond 100 Ws/Wh } 0 8 {A12R:A -> A13R:G: adjacent_5p upward } 0 9 {A13R:G -> A12R:A: adjacent_3p downward } 0 10 {A12R:A -> A25R:G: pairing antiparallel trans one_hbond 63 Wh/Ss } 0 11 {A25R:G -> A12R:A: pairing antiparallel trans one_hbond 63 Ss/Wh } 0 12 {A13R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A24R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A24R:C -> A25R:G: adjacent_5p upward } 0 15 {A25R:G -> A24R:C: adjacent_3p downward } 0 16 {A25R:G -> A26R:U: adjacent_5p upward } 0 17 {A26R:U -> A25R:G: adjacent_3p downward } 0 18 {A26R:U -> A27R:A: adjacent_5p upward } 0 19 {A27R:A -> A26R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:A 0 2 A13R:G 0 3 A14R:C 0 4 A23R:G 0 5 A24R:C 0 6 A25R:G 0 7 A26R:U 0 [Edges] 0 {A11R:C -> A12R:A: adjacent_5p } 0 1 {A12R:A -> A11R:C: adjacent_3p } 0 2 {A11R:C -> A26R:U: pairing antiparallel cis one_hbond 100 Wh/Ws } 0 3 {A26R:U -> A11R:C: pairing antiparallel cis one_hbond 100 Ws/Wh } 0 4 {A12R:A -> A13R:G: adjacent_5p upward } 0 5 {A13R:G -> A12R:A: adjacent_3p downward } 0 6 {A12R:A -> A25R:G: pairing antiparallel trans one_hbond 63 Wh/Ss } 0 7 {A25R:G -> A12R:A: pairing antiparallel trans one_hbond 63 Ss/Wh } 0 8 {A13R:G -> A14R:C: adjacent_5p upward } 0 9 {A14R:C -> A13R:G: adjacent_3p downward } 0 10 {A13R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A24R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A23R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A23R:G -> A24R:C: adjacent_5p upward } 0 15 {A24R:C -> A23R:G: adjacent_3p downward } 0 16 {A24R:C -> A25R:G: adjacent_5p upward } 0 17 {A25R:G -> A24R:C: adjacent_3p downward } 0 18 {A25R:G -> A26R:U: adjacent_5p upward } 0 19 {A26R:U -> A25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A12R:A 0 1 A13R:G 0 2 A14R:C 0 3 A15R:G 0 4 A22R:C 0 5 A23R:G 0 6 A24R:C 0 7 A25R:G 0 [Edges] 0 {A12R:A -> A13R:G: adjacent_5p upward } 0 1 {A13R:G -> A12R:A: adjacent_3p downward } 0 2 {A12R:A -> A25R:G: pairing antiparallel trans one_hbond 63 Wh/Ss } 0 3 {A25R:G -> A12R:A: pairing antiparallel trans one_hbond 63 Ss/Wh } 0 4 {A13R:G -> A14R:C: adjacent_5p upward } 0 5 {A14R:C -> A13R:G: adjacent_3p downward } 0 6 {A13R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A24R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:C -> A15R:G: adjacent_5p } 0 9 {A15R:G -> A14R:C: adjacent_3p } 0 10 {A14R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A23R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A15R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A22R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A15R:G -> A23R:G: outward } 0 15 {A23R:G -> A15R:G: outward } 0 16 {A22R:C -> A23R:G: adjacent_5p } 0 17 {A23R:G -> A22R:C: adjacent_3p } 0 18 {A23R:G -> A24R:C: adjacent_5p upward } 0 19 {A24R:C -> A23R:G: adjacent_3p downward } 0 20 {A24R:C -> A25R:G: adjacent_5p upward } 0 21 {A25R:G -> A24R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A13R:G 0 1 A14R:C 0 2 A15R:G 0 3 A16R:C 0 4 A21R:G 0 5 A22R:C 0 6 A23R:G 0 7 A24R:C 0 [Edges] 0 {A13R:G -> A14R:C: adjacent_5p upward } 0 1 {A14R:C -> A13R:G: adjacent_3p downward } 0 2 {A13R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A14R:C -> A15R:G: adjacent_5p } 0 5 {A15R:G -> A14R:C: adjacent_3p } 0 6 {A14R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A23R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A15R:G -> A16R:C: adjacent_5p upward } 0 9 {A16R:C -> A15R:G: adjacent_3p downward } 0 10 {A15R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A22R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A15R:G -> A23R:G: outward } 0 13 {A23R:G -> A15R:G: outward } 0 14 {A16R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A21R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A21R:G -> A22R:C: adjacent_5p upward } 0 17 {A22R:C -> A21R:G: adjacent_3p downward } 0 18 {A22R:C -> A23R:G: adjacent_5p } 0 19 {A23R:G -> A22R:C: adjacent_3p } 0 20 {A23R:G -> A24R:C: adjacent_5p upward } 0 21 {A24R:C -> A23R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A14R:C 0 1 A15R:G 0 2 A16R:C 0 3 A17R:U 0 4 A20R:G 0 5 A21R:G 0 6 A22R:C 0 7 A23R:G 0 [Edges] 0 {A14R:C -> A15R:G: adjacent_5p } 0 1 {A15R:G -> A14R:C: adjacent_3p } 0 2 {A14R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A15R:G -> A16R:C: adjacent_5p upward } 0 5 {A16R:C -> A15R:G: adjacent_3p downward } 0 6 {A15R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A15R:G -> A23R:G: outward } 0 9 {A23R:G -> A15R:G: outward } 0 10 {A16R:C -> A17R:U: adjacent_5p upward } 0 11 {A17R:U -> A16R:C: adjacent_3p downward } 0 12 {A16R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A21R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A17R:U -> A20R:G: pairing parallel trans one_hbond 87 Bs/Ww } 0 15 {A20R:G -> A17R:U: pairing parallel trans one_hbond 87 Ww/Bs } 0 16 {A20R:G -> A21R:G: adjacent_5p outward } 0 17 {A21R:G -> A20R:G: adjacent_3p outward } 0 18 {A21R:G -> A22R:C: adjacent_5p upward } 0 19 {A22R:C -> A21R:G: adjacent_3p downward } 0 20 {A22R:C -> A23R:G: adjacent_5p } 0 21 {A23R:G -> A22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:A 0 3 A5R:A 0 4 A19R:U 0 5 A20R:U 0 6 A21R:G 0 7 A22R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:A: adjacent_5p } 0 5 {A4R:A -> A3R:C: adjacent_3p } 0 6 {A3R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A20R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A4R:A -> A21R:G: outward } 0 13 {A21R:G -> A4R:A: outward } 0 14 {A5R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A19R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A19R:U -> A20R:U: adjacent_5p upward } 0 17 {A20R:U -> A19R:U: adjacent_3p downward } 0 18 {A20R:U -> A21R:G: adjacent_5p } 0 19 {A21R:G -> A20R:U: adjacent_3p } 0 20 {A21R:G -> A22R:C: adjacent_5p upward } 0 21 {A22R:C -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:A 0 2 A5R:A 0 3 A6R:U 0 4 A18R:G 0 5 A19R:U 0 6 A20R:U 0 7 A21R:G 0 [Edges] 0 {A3R:C -> A4R:A: adjacent_5p } 0 1 {A4R:A -> A3R:C: adjacent_3p } 0 2 {A3R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A20R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A21R:G: outward } 0 9 {A21R:G -> A4R:A: outward } 0 10 {A5R:A -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:A: adjacent_3p downward } 0 12 {A5R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A19R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A6R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A18R:G -> A6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A18R:G -> A19R:U: adjacent_5p upward } 0 17 {A19R:U -> A18R:G: adjacent_3p downward } 0 18 {A19R:U -> A20R:U: adjacent_5p upward } 0 19 {A20R:U -> A19R:U: adjacent_3p downward } 0 20 {A20R:U -> A21R:G: adjacent_5p } 0 21 {A21R:G -> A20R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:A 0 1 A10R:G 0 2 A11R:C 0 3 A12R:G 0 4 B13R:C 0 5 B14R:G 0 6 B15R:C 0 7 B16R:A 0 [Edges] 0 {A9R:A -> A10R:G: adjacent_5p } 0 1 {A10R:G -> A9R:A: adjacent_3p } 0 2 {A9R:A -> B16R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 3 {B16R:A -> A9R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 4 {A10R:G -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:G: adjacent_3p downward } 0 6 {A10R:G -> B15R:C: pairing antiparallel cis 127 Ww/Ww } 0 7 {B15R:C -> A10R:G: pairing antiparallel cis 127 Ww/Ww } 0 8 {A11R:C -> A12R:G: adjacent_5p } 0 9 {A12R:G -> A11R:C: adjacent_3p } 0 10 {A11R:C -> B14R:G: pairing antiparallel cis 128 Ww/Ww } 0 11 {B14R:G -> A11R:C: pairing antiparallel cis 128 Ww/Ww } 0 12 {A12R:G -> B13R:C: pairing antiparallel cis 128 Ww/Ww } 0 13 {B13R:C -> A12R:G: pairing antiparallel cis 128 Ww/Ww } 0 14 {B13R:C -> B14R:G: adjacent_5p } 0 15 {B14R:G -> B13R:C: adjacent_3p } 0 16 {B14R:G -> B15R:C: adjacent_5p upward } 0 17 {B15R:C -> B14R:G: adjacent_3p downward } 0 18 {B15R:C -> B16R:A: adjacent_5p upward } 0 19 {B16R:A -> B15R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:C 0 2 A12R:G 0 3 A13R:C 0 4 B12R:G 0 5 B13R:C 0 6 B14R:G 0 7 B15R:C 0 [Edges] 0 {A10R:G -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> B15R:C: pairing antiparallel cis 127 Ww/Ww } 0 3 {B15R:C -> A10R:G: pairing antiparallel cis 127 Ww/Ww } 0 4 {A11R:C -> A12R:G: adjacent_5p } 0 5 {A12R:G -> A11R:C: adjacent_3p } 0 6 {A11R:C -> B14R:G: pairing antiparallel cis 128 Ww/Ww } 0 7 {B14R:G -> A11R:C: pairing antiparallel cis 128 Ww/Ww } 0 8 {A12R:G -> A13R:C: adjacent_5p upward } 0 9 {A13R:C -> A12R:G: adjacent_3p downward } 0 10 {A12R:G -> B13R:C: pairing antiparallel cis 128 Ww/Ww } 0 11 {B13R:C -> A12R:G: pairing antiparallel cis 128 Ww/Ww } 0 12 {A13R:C -> B12R:G: pairing antiparallel cis 128 Ww/Ww } 0 13 {B12R:G -> A13R:C: pairing antiparallel cis 128 Ww/Ww } 0 14 {B12R:G -> B13R:C: adjacent_5p upward } 0 15 {B13R:C -> B12R:G: adjacent_3p downward } 0 16 {B13R:C -> B14R:G: adjacent_5p } 0 17 {B14R:G -> B13R:C: adjacent_3p } 0 18 {B14R:G -> B15R:C: adjacent_5p upward } 0 19 {B15R:C -> B14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:G 0 2 A13R:C 0 3 A14R:G 0 4 B11R:C 0 5 B12R:G 0 6 B13R:C 0 7 B14R:G 0 [Edges] 0 {A11R:C -> A12R:G: adjacent_5p } 0 1 {A12R:G -> A11R:C: adjacent_3p } 0 2 {A11R:C -> B14R:G: pairing antiparallel cis 128 Ww/Ww } 0 3 {B14R:G -> A11R:C: pairing antiparallel cis 128 Ww/Ww } 0 4 {A12R:G -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> B13R:C: pairing antiparallel cis 128 Ww/Ww } 0 7 {B13R:C -> A12R:G: pairing antiparallel cis 128 Ww/Ww } 0 8 {A13R:C -> A14R:G: adjacent_5p } 0 9 {A14R:G -> A13R:C: adjacent_3p } 0 10 {A13R:C -> B12R:G: pairing antiparallel cis 128 Ww/Ww } 0 11 {B12R:G -> A13R:C: pairing antiparallel cis 128 Ww/Ww } 0 12 {A14R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B11R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B11R:C -> B12R:G: adjacent_5p } 0 15 {B12R:G -> B11R:C: adjacent_3p } 0 16 {B12R:G -> B13R:C: adjacent_5p upward } 0 17 {B13R:C -> B12R:G: adjacent_3p downward } 0 18 {B13R:C -> B14R:G: adjacent_5p } 0 19 {B14R:G -> B13R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:C 0 2 A14R:G 0 3 A15R:C 0 4 B10R:G 0 5 B11R:C 0 6 B12R:G 0 7 B13R:C 0 [Edges] 0 {A12R:G -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> B13R:C: pairing antiparallel cis 128 Ww/Ww } 0 3 {B13R:C -> A12R:G: pairing antiparallel cis 128 Ww/Ww } 0 4 {A13R:C -> A14R:G: adjacent_5p } 0 5 {A14R:G -> A13R:C: adjacent_3p } 0 6 {A13R:C -> B12R:G: pairing antiparallel cis 128 Ww/Ww } 0 7 {B12R:G -> A13R:C: pairing antiparallel cis 128 Ww/Ww } 0 8 {A14R:G -> A15R:C: adjacent_5p upward } 0 9 {A15R:C -> A14R:G: adjacent_3p downward } 0 10 {A14R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B11R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A15R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B10R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B10R:G -> B11R:C: adjacent_5p upward } 0 15 {B11R:C -> B10R:G: adjacent_3p downward } 0 16 {B11R:C -> B12R:G: adjacent_5p } 0 17 {B12R:G -> B11R:C: adjacent_3p } 0 18 {B12R:G -> B13R:C: adjacent_5p upward } 0 19 {B13R:C -> B12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A13R:C 0 1 A14R:G 0 2 A15R:C 0 3 A16R:A 0 4 B9R:A 0 5 B10R:G 0 6 B11R:C 0 7 B12R:G 0 [Edges] 0 {A13R:C -> A14R:G: adjacent_5p } 0 1 {A14R:G -> A13R:C: adjacent_3p } 0 2 {A13R:C -> B12R:G: pairing antiparallel cis 128 Ww/Ww } 0 3 {B12R:G -> A13R:C: pairing antiparallel cis 128 Ww/Ww } 0 4 {A14R:G -> A15R:C: adjacent_5p upward } 0 5 {A15R:C -> A14R:G: adjacent_3p downward } 0 6 {A14R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B11R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A15R:C -> A16R:A: adjacent_5p upward } 0 9 {A16R:A -> A15R:C: adjacent_3p downward } 0 10 {A15R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B10R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A16R:A -> B9R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 13 {B9R:A -> A16R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 14 {B9R:A -> B10R:G: adjacent_5p } 0 15 {B10R:G -> B9R:A: adjacent_3p } 0 16 {B10R:G -> B11R:C: adjacent_5p upward } 0 17 {B11R:C -> B10R:G: adjacent_3p downward } 0 18 {B11R:C -> B12R:G: adjacent_5p } 0 19 {B12R:G -> B11R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B2R:G 0 1 B3R:C 0 2 B4R:A 0 3 B5R:A 0 4 B19R:U 0 5 B20R:U 0 6 B21R:G 0 7 B22R:C 0 [Edges] 0 {B2R:G -> B3R:C: adjacent_5p upward } 0 1 {B3R:C -> B2R:G: adjacent_3p downward } 0 2 {B2R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B22R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B3R:C -> B4R:A: adjacent_5p } 0 5 {B4R:A -> B3R:C: adjacent_3p } 0 6 {B3R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B21R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B4R:A -> B5R:A: adjacent_5p upward } 0 9 {B5R:A -> B4R:A: adjacent_3p downward } 0 10 {B4R:A -> B20R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B20R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B4R:A -> B21R:G: outward } 0 13 {B21R:G -> B4R:A: outward } 0 14 {B5R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B19R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B19R:U -> B20R:U: adjacent_5p upward } 0 17 {B20R:U -> B19R:U: adjacent_3p downward } 0 18 {B20R:U -> B21R:G: adjacent_5p } 0 19 {B21R:G -> B20R:U: adjacent_3p } 0 20 {B21R:G -> B22R:C: adjacent_5p upward } 0 21 {B22R:C -> B21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B3R:C 0 1 B4R:A 0 2 B5R:A 0 3 B6R:U 0 4 B18R:G 0 5 B19R:U 0 6 B20R:U 0 7 B21R:G 0 [Edges] 0 {B3R:C -> B4R:A: adjacent_5p } 0 1 {B4R:A -> B3R:C: adjacent_3p } 0 2 {B3R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B21R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B4R:A -> B5R:A: adjacent_5p upward } 0 5 {B5R:A -> B4R:A: adjacent_3p downward } 0 6 {B4R:A -> B20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B20R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B4R:A -> B21R:G: outward } 0 9 {B21R:G -> B4R:A: outward } 0 10 {B5R:A -> B6R:U: adjacent_5p upward } 0 11 {B6R:U -> B5R:A: adjacent_3p downward } 0 12 {B5R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B19R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B6R:U -> B18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {B18R:G -> B6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {B18R:G -> B19R:U: adjacent_5p upward } 0 17 {B19R:U -> B18R:G: adjacent_3p downward } 0 18 {B19R:U -> B20R:U: adjacent_5p upward } 0 19 {B20R:U -> B19R:U: adjacent_3p downward } 0 20 {B20R:U -> B21R:G: adjacent_5p } 0 21 {B21R:G -> B20R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:A 0 3 A5R:A 0 4 A17R:U 0 5 A18R:U 0 6 A19R:G 0 7 A20R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A18R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A4R:A -> A19R:G: outward } 0 13 {A19R:G -> A4R:A: outward } 0 14 {A5R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A17R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A5R:A -> A18R:U: outward } 0 17 {A18R:U -> A5R:A: outward } 0 18 {A17R:U -> A18R:U: adjacent_5p } 0 19 {A18R:U -> A17R:U: adjacent_3p } 0 20 {A18R:U -> A19R:G: adjacent_5p } 0 21 {A19R:G -> A18R:U: adjacent_3p } 0 22 {A19R:G -> A20R:C: adjacent_5p upward } 0 23 {A20R:C -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:A 0 2 A5R:A 0 3 A6R:C 0 4 A16R:G 0 5 A17R:U 0 6 A18R:U 0 7 A19R:G 0 [Edges] 0 {A3R:C -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A18R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A19R:G: outward } 0 9 {A19R:G -> A4R:A: outward } 0 10 {A5R:A -> A6R:C: adjacent_5p upward } 0 11 {A6R:C -> A5R:A: adjacent_3p downward } 0 12 {A5R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A17R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A5R:A -> A18R:U: outward } 0 15 {A18R:U -> A5R:A: outward } 0 16 {A6R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 17 {A16R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 18 {A16R:G -> A17R:U: adjacent_5p upward } 0 19 {A17R:U -> A16R:G: adjacent_3p downward } 0 20 {A17R:U -> A18R:U: adjacent_5p } 0 21 {A18R:U -> A17R:U: adjacent_3p } 0 22 {A18R:U -> A19R:G: adjacent_5p } 0 23 {A19R:G -> A18R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:A 0 2 A6R:C 0 3 A7R:G 0 4 A15R:C 0 5 A16R:G 0 6 A17R:U 0 7 A18R:U 0 [Edges] 0 {A4R:A -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A18R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:A -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A17R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:A -> A18R:U: outward } 0 9 {A18R:U -> A5R:A: outward } 0 10 {A6R:C -> A7R:G: adjacent_5p } 0 11 {A7R:G -> A6R:C: adjacent_3p } 0 12 {A6R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A16R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A15R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A7R:G -> A16R:G: outward } 0 17 {A16R:G -> A7R:G: outward } 0 18 {A15R:C -> A16R:G: adjacent_5p upward } 0 19 {A16R:G -> A15R:C: adjacent_3p downward } 0 20 {A16R:G -> A17R:U: adjacent_5p upward } 0 21 {A17R:U -> A16R:G: adjacent_3p downward } 0 22 {A17R:U -> A18R:U: adjacent_5p } 0 23 {A18R:U -> A17R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:A 0 2 A10R:U 0 3 A11R:G 0 4 B10R:C 0 5 B11R:A 0 6 B12R:U 0 7 B13R:C 0 [Edges] 0 {A8R:G -> A9R:A: adjacent_5p upward } 0 1 {A9R:A -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B13R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:A -> A10R:U: adjacent_5p upward } 0 5 {A10R:U -> A9R:A: adjacent_3p downward } 0 6 {A9R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B12R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:A -> B13R:C: outward } 0 9 {B13R:C -> A9R:A: outward } 0 10 {A10R:U -> A11R:G: adjacent_5p } 0 11 {A11R:G -> A10R:U: adjacent_3p } 0 12 {A10R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B11R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A11R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B10R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B10R:C -> B11R:A: adjacent_5p upward } 0 17 {B11R:A -> B10R:C: adjacent_3p downward } 0 18 {B11R:A -> B12R:U: adjacent_5p upward } 0 19 {B12R:U -> B11R:A: adjacent_3p downward } 0 20 {B12R:U -> B13R:C: adjacent_5p } 0 21 {B13R:C -> B12R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:A 0 1 A10R:U 0 2 A11R:G 0 3 A12R:G 0 4 B9R:C 0 5 B10R:C 0 6 B11R:A 0 7 B12R:U 0 [Edges] 0 {A9R:A -> A10R:U: adjacent_5p upward } 0 1 {A10R:U -> A9R:A: adjacent_3p downward } 0 2 {A9R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B12R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A10R:U -> A11R:G: adjacent_5p } 0 5 {A11R:G -> A10R:U: adjacent_3p } 0 6 {A10R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B11R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:G -> A12R:G: adjacent_5p upward } 0 9 {A12R:G -> A11R:G: adjacent_3p downward } 0 10 {A11R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B10R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:G -> B9R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B9R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B9R:C -> B10R:C: adjacent_5p upward } 0 15 {B10R:C -> B9R:C: adjacent_3p downward } 0 16 {B10R:C -> B11R:A: adjacent_5p upward } 0 17 {B11R:A -> B10R:C: adjacent_3p downward } 0 18 {B11R:A -> B12R:U: adjacent_5p upward } 0 19 {B12R:U -> B11R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:U 0 1 A11R:G 0 2 A12R:G 0 3 A13R:U 0 4 B8R:A 0 5 B9R:C 0 6 B10R:C 0 7 B11R:A 0 [Edges] 0 {A10R:U -> A11R:G: adjacent_5p } 0 1 {A11R:G -> A10R:U: adjacent_3p } 0 2 {A10R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B11R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A11R:G -> A12R:G: adjacent_5p upward } 0 5 {A12R:G -> A11R:G: adjacent_3p downward } 0 6 {A11R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B10R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> A13R:U: adjacent_5p } 0 9 {A13R:U -> A12R:G: adjacent_3p } 0 10 {A12R:G -> B9R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B9R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:U -> B8R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B8R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B8R:A -> B9R:C: adjacent_5p upward } 0 15 {B9R:C -> B8R:A: adjacent_3p downward } 0 16 {B9R:C -> B10R:C: adjacent_5p upward } 0 17 {B10R:C -> B9R:C: adjacent_3p downward } 0 18 {B10R:C -> B11R:A: adjacent_5p upward } 0 19 {B11R:A -> B10R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:G 0 1 A12R:G 0 2 A13R:U 0 3 A14R:U 0 4 B7R:A 0 5 B8R:A 0 6 B9R:C 0 7 B10R:C 0 [Edges] 0 {A11R:G -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:G: adjacent_3p downward } 0 2 {A11R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B10R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:G -> A13R:U: adjacent_5p } 0 5 {A13R:U -> A12R:G: adjacent_3p } 0 6 {A12R:G -> B9R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B9R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:U -> A14R:U: adjacent_5p } 0 9 {A14R:U -> A13R:U: adjacent_3p } 0 10 {A13R:U -> B8R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B8R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A14R:U -> B7R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B7R:A -> A14R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B7R:A -> B8R:A: adjacent_5p upward } 0 15 {B8R:A -> B7R:A: adjacent_3p downward } 0 16 {B8R:A -> B9R:C: adjacent_5p upward } 0 17 {B9R:C -> B8R:A: adjacent_3p downward } 0 18 {B9R:C -> B10R:C: adjacent_5p upward } 0 19 {B10R:C -> B9R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B2R:C 0 1 B3R:A 0 2 B4R:C 0 3 B5R:C 0 4 B15R:G 0 5 B16R:G 0 6 B17R:U 0 7 B18R:G 0 [Edges] 0 {B2R:C -> B3R:A: adjacent_5p upward } 0 1 {B3R:A -> B2R:C: adjacent_3p downward } 0 2 {B2R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B18R:G -> B2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B3R:A -> B4R:C: adjacent_5p upward } 0 5 {B4R:C -> B3R:A: adjacent_3p downward } 0 6 {B3R:A -> B17R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B17R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B3R:A -> B18R:G: outward } 0 9 {B18R:G -> B3R:A: outward } 0 10 {B4R:C -> B5R:C: adjacent_5p } 0 11 {B5R:C -> B4R:C: adjacent_3p } 0 12 {B4R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B16R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B5R:C -> B15R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B15R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B5R:C -> B16R:G: outward } 0 17 {B16R:G -> B5R:C: outward } 0 18 {B15R:G -> B16R:G: adjacent_5p upward } 0 19 {B16R:G -> B15R:G: adjacent_3p downward } 0 20 {B16R:G -> B17R:U: adjacent_5p upward } 0 21 {B17R:U -> B16R:G: adjacent_3p downward } 0 22 {B17R:U -> B18R:G: adjacent_5p upward } 0 23 {B18R:G -> B17R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 B3R:A 0 1 B4R:C 0 2 B5R:C 0 3 B6R:G 0 4 B14R:C 0 5 B15R:G 0 6 B16R:G 0 7 B17R:U 0 [Edges] 0 {B3R:A -> B4R:C: adjacent_5p upward } 0 1 {B4R:C -> B3R:A: adjacent_3p downward } 0 2 {B3R:A -> B17R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B17R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B4R:C -> B5R:C: adjacent_5p } 0 5 {B5R:C -> B4R:C: adjacent_3p } 0 6 {B4R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B16R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B5R:C -> B6R:G: adjacent_5p } 0 9 {B6R:G -> B5R:C: adjacent_3p } 0 10 {B5R:C -> B15R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B15R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B5R:C -> B16R:G: outward } 0 13 {B16R:G -> B5R:C: outward } 0 14 {B6R:G -> B14R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B14R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B6R:G -> B15R:G: outward } 0 17 {B15R:G -> B6R:G: outward } 0 18 {B14R:C -> B15R:G: adjacent_5p } 0 19 {B15R:G -> B14R:C: adjacent_3p } 0 20 {B15R:G -> B16R:G: adjacent_5p upward } 0 21 {B16R:G -> B15R:G: adjacent_3p downward } 0 22 {B16R:G -> B17R:U: adjacent_5p upward } 0 23 {B17R:U -> B16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:A 0 2 4R:C 0 3 5R:U 0 4 16R:A 0 5 17R:G 0 6 18R:U 0 7 19R:C 0 [Edges] 0 {2R:G -> 3R:A: adjacent_5p upward } 0 1 {3R:A -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {19R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:A -> 4R:C: adjacent_5p upward } 0 5 {4R:C -> 3R:A: adjacent_3p downward } 0 6 {3R:A -> 18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {18R:U -> 3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {4R:C -> 5R:U: adjacent_5p } 0 9 {5R:U -> 4R:C: adjacent_3p } 0 10 {4R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {17R:G -> 4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {5R:U -> 16R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 13 {16R:A -> 5R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 14 {16R:A -> 17R:G: adjacent_5p upward } 0 15 {17R:G -> 16R:A: adjacent_3p downward } 0 16 {17R:G -> 18R:U: adjacent_5p upward } 0 17 {18R:U -> 17R:G: adjacent_3p downward } 0 18 {18R:U -> 19R:C: adjacent_5p upward } 0 19 {19R:C -> 18R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 3R:A 0 1 4R:C 0 2 5R:U 0 3 6R:A 0 4 15R:U 0 5 16R:A 0 6 17R:G 0 7 18R:U 0 [Edges] 0 {3R:A -> 4R:C: adjacent_5p upward } 0 1 {4R:C -> 3R:A: adjacent_3p downward } 0 2 {3R:A -> 18R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {18R:U -> 3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {4R:C -> 5R:U: adjacent_5p } 0 5 {5R:U -> 4R:C: adjacent_3p } 0 6 {4R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {17R:G -> 4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {5R:U -> 6R:A: adjacent_5p } 0 9 {6R:A -> 5R:U: adjacent_3p } 0 10 {5R:U -> 16R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {16R:A -> 5R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {6R:A -> 15R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {15R:U -> 6R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {6R:A -> 16R:A: outward } 0 15 {16R:A -> 6R:A: outward } 0 16 {15R:U -> 16R:A: adjacent_5p upward } 0 17 {16R:A -> 15R:U: adjacent_3p downward } 0 18 {16R:A -> 17R:G: adjacent_5p upward } 0 19 {17R:G -> 16R:A: adjacent_3p downward } 0 20 {17R:G -> 18R:U: adjacent_5p upward } 0 21 {18R:U -> 17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 4R:C 0 1 5R:U 0 2 6R:A 0 3 7R:G 0 4 14R:C 0 5 15R:U 0 6 16R:A 0 7 17R:G 0 [Edges] 0 {4R:C -> 5R:U: adjacent_5p } 0 1 {5R:U -> 4R:C: adjacent_3p } 0 2 {4R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {17R:G -> 4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {5R:U -> 6R:A: adjacent_5p } 0 5 {6R:A -> 5R:U: adjacent_3p } 0 6 {5R:U -> 16R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {16R:A -> 5R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {6R:A -> 7R:G: adjacent_5p upward } 0 9 {7R:G -> 6R:A: adjacent_3p downward } 0 10 {6R:A -> 15R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {15R:U -> 6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {6R:A -> 16R:A: outward } 0 13 {16R:A -> 6R:A: outward } 0 14 {7R:G -> 14R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {14R:C -> 7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {14R:C -> 15R:U: adjacent_5p upward } 0 17 {15R:U -> 14R:C: adjacent_3p downward } 0 18 {15R:U -> 16R:A: adjacent_5p upward } 0 19 {16R:A -> 15R:U: adjacent_3p downward } 0 20 {16R:A -> 17R:G: adjacent_5p upward } 0 21 {17R:G -> 16R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 5R:U 0 1 6R:A 0 2 7R:G 0 3 8R:C 0 4 13R:G 0 5 14R:C 0 6 15R:U 0 7 16R:A 0 [Edges] 0 {5R:U -> 6R:A: adjacent_5p } 0 1 {6R:A -> 5R:U: adjacent_3p } 0 2 {5R:U -> 16R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {16R:A -> 5R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {6R:A -> 7R:G: adjacent_5p upward } 0 5 {7R:G -> 6R:A: adjacent_3p downward } 0 6 {6R:A -> 15R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {15R:U -> 6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {6R:A -> 16R:A: outward } 0 9 {16R:A -> 6R:A: outward } 0 10 {7R:G -> 8R:C: adjacent_5p upward } 0 11 {8R:C -> 7R:G: adjacent_3p downward } 0 12 {7R:G -> 14R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {14R:C -> 7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {8R:C -> 13R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {13R:G -> 8R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {13R:G -> 14R:C: adjacent_5p upward } 0 17 {14R:C -> 13R:G: adjacent_3p downward } 0 18 {14R:C -> 15R:U: adjacent_5p upward } 0 19 {15R:U -> 14R:C: adjacent_3p downward } 0 20 {15R:U -> 16R:A: adjacent_5p upward } 0 21 {16R:A -> 15R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:G 0 2 A3R:C 0 3 A4R:G 0 4 A20R:C 0 5 A21R:G 0 6 A22R:C 0 7 A23R:C 0 [Edges] 0 {A1R:G -> A2R:G: adjacent_5p upward } 0 1 {A2R:G -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:G -> A3R:C: adjacent_5p upward } 0 5 {A3R:C -> A2R:G: adjacent_3p downward } 0 6 {A2R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:C -> A4R:G: adjacent_5p upward } 0 9 {A4R:G -> A3R:C: adjacent_3p downward } 0 10 {A3R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A21R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A4R:G -> A21R:G: outward } 0 15 {A21R:G -> A4R:G: outward } 0 16 {A20R:C -> A21R:G: adjacent_5p upward } 0 17 {A21R:G -> A20R:C: adjacent_3p downward } 0 18 {A21R:G -> A22R:C: adjacent_5p upward } 0 19 {A22R:C -> A21R:G: adjacent_3p downward } 0 20 {A22R:C -> A23R:C: adjacent_5p upward } 0 21 {A23R:C -> A22R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:A 0 4 A19R:U 0 5 A20R:C 0 6 A21R:G 0 7 A22R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A21R:G: outward } 0 13 {A21R:G -> A4R:G: outward } 0 14 {A5R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A19R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A19R:U -> A20R:C: adjacent_5p upward } 0 17 {A20R:C -> A19R:U: adjacent_3p downward } 0 18 {A20R:C -> A21R:G: adjacent_5p upward } 0 19 {A21R:G -> A20R:C: adjacent_3p downward } 0 20 {A21R:G -> A22R:C: adjacent_5p upward } 0 21 {A22R:C -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:G 0 2 A9R:U 0 3 A10R:G 0 4 A15R:A 0 5 A16R:A 0 6 A17R:U 0 7 A18R:C 0 [Edges] 0 {A7R:G -> A8R:G: adjacent_5p upward } 0 1 {A8R:G -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A18R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:G -> A9R:U: adjacent_5p upward } 0 5 {A9R:U -> A8R:G: adjacent_3p downward } 0 6 {A8R:G -> A17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A17R:U -> A8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A9R:U -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:U: adjacent_3p downward } 0 10 {A9R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A16R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A10R:G -> A15R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A15R:A -> A10R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A15R:A -> A16R:A: adjacent_5p upward } 0 15 {A16R:A -> A15R:A: adjacent_3p downward } 0 16 {A16R:A -> A17R:U: adjacent_5p upward } 0 17 {A17R:U -> A16R:A: adjacent_3p downward } 0 18 {A17R:U -> A18R:C: adjacent_5p } 0 19 {A18R:C -> A17R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:G 0 2 A3R:C 0 3 A4R:G 0 4 A24R:C 0 5 A25R:G 0 6 A26R:C 0 7 A27R:C 0 [Edges] 0 {A1R:G -> A2R:G: adjacent_5p upward } 0 1 {A2R:G -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:G -> A3R:C: adjacent_5p upward } 0 5 {A3R:C -> A2R:G: adjacent_3p downward } 0 6 {A2R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A26R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:C -> A4R:G: adjacent_5p } 0 9 {A4R:G -> A3R:C: adjacent_3p } 0 10 {A3R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A25R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A24R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A4R:G -> A25R:G: outward } 0 15 {A25R:G -> A4R:G: outward } 0 16 {A24R:C -> A25R:G: adjacent_5p } 0 17 {A25R:G -> A24R:C: adjacent_3p } 0 18 {A25R:G -> A26R:C: adjacent_5p upward } 0 19 {A26R:C -> A25R:G: adjacent_3p downward } 0 20 {A26R:C -> A27R:C: adjacent_5p upward } 0 21 {A27R:C -> A26R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:U 0 3 A6R:C 0 4 A22R:G 0 5 A23R:U 0 6 A24R:C 0 7 A25R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p } 0 1 {A4R:G -> A3R:C: adjacent_3p } 0 2 {A3R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A24R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A25R:G: outward } 0 9 {A25R:G -> A4R:G: outward } 0 10 {A5R:U -> A6R:C: adjacent_5p upward } 0 11 {A6R:C -> A5R:U: adjacent_3p downward } 0 12 {A6R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A22R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A22R:G -> A23R:U: adjacent_5p upward } 0 15 {A23R:U -> A22R:G: adjacent_3p downward } 0 16 {A23R:U -> A24R:C: adjacent_5p upward } 0 17 {A24R:C -> A23R:U: adjacent_3p downward } 0 18 {A24R:C -> A25R:G: adjacent_5p } 0 19 {A25R:G -> A24R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 9 . . . . 19 . [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:A 0 2 A10R:C 0 3 A11R:C 0 4 A16R:G 0 5 A17R:G 0 6 A18R:U 0 7 A19R:G 0 [Edges] 0 {A8R:C -> A9R:A: adjacent_5p upward } 0 1 {A9R:A -> A8R:C: adjacent_3p downward } 0 2 {A8R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:A -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:A: adjacent_3p downward } 0 6 {A9R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A18R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:A -> A19R:G: outward } 0 9 {A19R:G -> A9R:A: outward } 0 10 {A10R:C -> A11R:C: adjacent_5p upward } 0 11 {A11R:C -> A10R:C: adjacent_3p downward } 0 12 {A10R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A11R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A16R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A16R:G -> A17R:G: adjacent_5p upward } 0 17 {A17R:G -> A16R:G: adjacent_3p downward } 0 18 {A17R:G -> A18R:U: adjacent_5p upward } 0 19 {A18R:U -> A17R:G: adjacent_3p downward } 0 20 {A18R:U -> A19R:G: adjacent_5p upward } 0 21 {A19R:G -> A18R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:A 0 1 A10R:C 0 2 A11R:C 0 3 A12R:U 0 4 A15R:G 0 5 A16R:G 0 6 A17R:G 0 7 A18R:U 0 [Edges] 0 {A9R:A -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:A: adjacent_3p downward } 0 2 {A9R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A18R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A10R:C -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:C: adjacent_3p downward } 0 6 {A10R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:C -> A12R:U: adjacent_5p upward } 0 9 {A12R:U -> A11R:C: adjacent_3p downward } 0 10 {A11R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A16R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:U -> A15R:G: pairing parallel trans 87 Bs/Ww } 0 13 {A15R:G -> A12R:U: pairing parallel trans 87 Ww/Bs } 0 14 {A15R:G -> A16R:G: adjacent_5p outward } 0 15 {A16R:G -> A15R:G: adjacent_3p outward } 0 16 {A16R:G -> A17R:G: adjacent_5p upward } 0 17 {A17R:G -> A16R:G: adjacent_3p downward } 0 18 {A17R:G -> A18R:U: adjacent_5p upward } 0 19 {A18R:U -> A17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 28R:C 0 1 29R:A 0 2 30R:G 0 3 31R:A 0 4 39R:U 0 5 40R:C 0 6 41R:U 0 7 42R:G 0 [Edges] 0 {28R:C -> 29R:A: adjacent_5p upward } 0 1 {29R:A -> 28R:C: adjacent_3p downward } 0 2 {28R:C -> 42R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {42R:G -> 28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {29R:A -> 30R:G: adjacent_5p upward } 0 5 {30R:G -> 29R:A: adjacent_3p downward } 0 6 {29R:A -> 41R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {41R:U -> 29R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {29R:A -> 42R:G: outward } 0 9 {42R:G -> 29R:A: outward } 0 10 {30R:G -> 31R:A: adjacent_5p upward } 0 11 {31R:A -> 30R:G: adjacent_3p downward } 0 12 {30R:G -> 40R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {40R:C -> 30R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {31R:A -> 39R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {39R:U -> 31R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {39R:U -> 40R:C: adjacent_5p upward } 0 17 {40R:C -> 39R:U: adjacent_3p downward } 0 18 {40R:C -> 41R:U: adjacent_5p upward } 0 19 {41R:U -> 40R:C: adjacent_3p downward } 0 20 {41R:U -> 42R:G: adjacent_5p upward } 0 21 {42R:G -> 41R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 29R:A 0 1 30R:G 0 2 31R:A 0 3 32R:C 0 4 38R:A 0 5 39R:U 0 6 40R:C 0 7 41R:U 0 [Edges] 0 {29R:A -> 30R:G: adjacent_5p upward } 0 1 {30R:G -> 29R:A: adjacent_3p downward } 0 2 {29R:A -> 41R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {41R:U -> 29R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {30R:G -> 31R:A: adjacent_5p upward } 0 5 {31R:A -> 30R:G: adjacent_3p downward } 0 6 {30R:G -> 40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {40R:C -> 30R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {31R:A -> 32R:C: adjacent_5p upward } 0 9 {32R:C -> 31R:A: adjacent_3p downward } 0 10 {31R:A -> 39R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {39R:U -> 31R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {32R:C -> 38R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 13 {38R:A -> 32R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 14 {38R:A -> 39R:U: adjacent_5p upward } 0 15 {39R:U -> 38R:A: adjacent_3p downward } 0 16 {39R:U -> 40R:C: adjacent_5p upward } 0 17 {40R:C -> 39R:U: adjacent_3p downward } 0 18 {40R:C -> 41R:U: adjacent_5p upward } 0 19 {41R:U -> 40R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B601R:G 0 1 B602R:G 0 2 B603R:A 0 3 B604R:G 0 4 B669R:U 0 5 B670R:U 0 6 B671R:C 0 7 B672R:C 0 [Edges] 0 {B601R:G -> B602R:G: adjacent_5p upward } 0 1 {B602R:G -> B601R:G: adjacent_3p downward } 0 2 {B601R:G -> B672R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B672R:C -> B601R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B602R:G -> B603R:A: adjacent_5p upward } 0 5 {B603R:A -> B602R:G: adjacent_3p downward } 0 6 {B602R:G -> B671R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B671R:C -> B602R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B603R:A -> B604R:G: adjacent_5p upward } 0 9 {B604R:G -> B603R:A: adjacent_3p downward } 0 10 {B603R:A -> B670R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B670R:U -> B603R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B604R:G -> B669R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B669R:U -> B604R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {B669R:U -> B670R:U: adjacent_5p } 0 15 {B670R:U -> B669R:U: adjacent_3p } 0 16 {B670R:U -> B671R:C: adjacent_5p upward } 0 17 {B671R:C -> B670R:U: adjacent_3p downward } 0 18 {B671R:C -> B672R:C: adjacent_5p } 0 19 {B672R:C -> B671R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B602R:G 0 1 B603R:A 0 2 B604R:G 0 3 B605R:C 0 4 B668R:G 0 5 B669R:U 0 6 B670R:U 0 7 B671R:C 0 [Edges] 0 {B602R:G -> B603R:A: adjacent_5p upward } 0 1 {B603R:A -> B602R:G: adjacent_3p downward } 0 2 {B602R:G -> B671R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B671R:C -> B602R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B603R:A -> B604R:G: adjacent_5p upward } 0 5 {B604R:G -> B603R:A: adjacent_3p downward } 0 6 {B603R:A -> B670R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B670R:U -> B603R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B604R:G -> B605R:C: adjacent_5p upward } 0 9 {B605R:C -> B604R:G: adjacent_3p downward } 0 10 {B604R:G -> B669R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B669R:U -> B604R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {B605R:C -> B668R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B668R:G -> B605R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B668R:G -> B669R:U: adjacent_5p upward } 0 15 {B669R:U -> B668R:G: adjacent_3p downward } 0 16 {B669R:U -> B670R:U: adjacent_5p } 0 17 {B670R:U -> B669R:U: adjacent_3p } 0 18 {B670R:U -> B671R:C: adjacent_5p upward } 0 19 {B671R:C -> B670R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B603R:A 0 1 B604R:G 0 2 B605R:C 0 3 B606R:G 0 4 B667R:C 0 5 B668R:G 0 6 B669R:U 0 7 B670R:U 0 [Edges] 0 {B603R:A -> B604R:G: adjacent_5p upward } 0 1 {B604R:G -> B603R:A: adjacent_3p downward } 0 2 {B603R:A -> B670R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B670R:U -> B603R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B604R:G -> B605R:C: adjacent_5p upward } 0 5 {B605R:C -> B604R:G: adjacent_3p downward } 0 6 {B604R:G -> B669R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B669R:U -> B604R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B605R:C -> B606R:G: adjacent_5p } 0 9 {B606R:G -> B605R:C: adjacent_3p } 0 10 {B605R:C -> B668R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B668R:G -> B605R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B606R:G -> B667R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B667R:C -> B606R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B606R:G -> B668R:G: outward } 0 15 {B668R:G -> B606R:G: outward } 0 16 {B667R:C -> B668R:G: adjacent_5p upward } 0 17 {B668R:G -> B667R:C: adjacent_3p downward } 0 18 {B668R:G -> B669R:U: adjacent_5p upward } 0 19 {B669R:U -> B668R:G: adjacent_3p downward } 0 20 {B669R:U -> B670R:U: adjacent_5p } 0 21 {B670R:U -> B669R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B604R:G 0 1 B605R:C 0 2 B606R:G 0 3 B607R:G 0 4 B666R:C 0 5 B667R:C 0 6 B668R:G 0 7 B669R:U 0 [Edges] 0 {B604R:G -> B605R:C: adjacent_5p upward } 0 1 {B605R:C -> B604R:G: adjacent_3p downward } 0 2 {B604R:G -> B669R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B669R:U -> B604R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B605R:C -> B606R:G: adjacent_5p } 0 5 {B606R:G -> B605R:C: adjacent_3p } 0 6 {B605R:C -> B668R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B668R:G -> B605R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B606R:G -> B607R:G: adjacent_5p upward } 0 9 {B607R:G -> B606R:G: adjacent_3p downward } 0 10 {B606R:G -> B667R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B667R:C -> B606R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B606R:G -> B668R:G: outward } 0 13 {B668R:G -> B606R:G: outward } 0 14 {B607R:G -> B666R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B666R:C -> B607R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B666R:C -> B667R:C: adjacent_5p upward } 0 17 {B667R:C -> B666R:C: adjacent_3p downward } 0 18 {B667R:C -> B668R:G: adjacent_5p upward } 0 19 {B668R:G -> B667R:C: adjacent_3p downward } 0 20 {B668R:G -> B669R:U: adjacent_5p upward } 0 21 {B669R:U -> B668R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B610R:G 0 1 B611R:U 0 2 B612R:U 0 3 B613R:C 0 4 B622R:G 0 5 B623R:A 0 6 B624R:A 0 7 B625R:U 0 [Edges] 0 {B610R:G -> B611R:U: adjacent_5p upward } 0 1 {B611R:U -> B610R:G: adjacent_3p downward } 0 2 {B610R:G -> B625R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B625R:U -> B610R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B611R:U -> B612R:U: adjacent_5p upward } 0 5 {B612R:U -> B611R:U: adjacent_3p downward } 0 6 {B611R:U -> B624R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B624R:A -> B611R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B612R:U -> B613R:C: adjacent_5p upward } 0 9 {B613R:C -> B612R:U: adjacent_3p downward } 0 10 {B612R:U -> B623R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B623R:A -> B612R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B613R:C -> B622R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B622R:G -> B613R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B622R:G -> B623R:A: adjacent_5p upward } 0 15 {B623R:A -> B622R:G: adjacent_3p downward } 0 16 {B623R:A -> B624R:A: adjacent_5p upward } 0 17 {B624R:A -> B623R:A: adjacent_3p downward } 0 18 {B624R:A -> B625R:U: adjacent_5p upward } 0 19 {B625R:U -> B624R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B625R:U 0 1 B626R:A 0 2 B627R:C 0 3 B628R:C 0 4 B642R:G 0 5 B643R:G 0 6 B644R:G 0 7 B645R:G 0 [Edges] 0 {B625R:U -> B626R:A: adjacent_5p upward } 0 1 {B626R:A -> B625R:U: adjacent_3p downward } 0 2 {B625R:U -> B645R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 3 {B645R:G -> B625R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 4 {B626R:A -> B627R:C: adjacent_5p upward } 0 5 {B627R:C -> B626R:A: adjacent_3p downward } 0 6 {B626R:A -> B644R:G: pairing antiparallel cis VIII Ww/Ww } 0 7 {B644R:G -> B626R:A: pairing antiparallel cis VIII Ww/Ww } 0 8 {B627R:C -> B628R:C: adjacent_5p upward } 0 9 {B628R:C -> B627R:C: adjacent_3p downward } 0 10 {B627R:C -> B643R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B643R:G -> B627R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B628R:C -> B642R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B642R:G -> B628R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B642R:G -> B643R:G: adjacent_5p upward } 0 15 {B643R:G -> B642R:G: adjacent_3p downward } 0 16 {B643R:G -> B644R:G: adjacent_5p upward } 0 17 {B644R:G -> B643R:G: adjacent_3p downward } 0 18 {B644R:G -> B645R:G: adjacent_5p upward } 0 19 {B645R:G -> B644R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B626R:A 0 1 B627R:C 0 2 B628R:C 0 3 B629R:U 0 4 B641R:A 0 5 B642R:G 0 6 B643R:G 0 7 B644R:G 0 [Edges] 0 {B626R:A -> B627R:C: adjacent_5p upward } 0 1 {B627R:C -> B626R:A: adjacent_3p downward } 0 2 {B626R:A -> B644R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {B644R:G -> B626R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {B627R:C -> B628R:C: adjacent_5p upward } 0 5 {B628R:C -> B627R:C: adjacent_3p downward } 0 6 {B627R:C -> B643R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B643R:G -> B627R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B628R:C -> B629R:U: adjacent_5p upward } 0 9 {B629R:U -> B628R:C: adjacent_3p downward } 0 10 {B628R:C -> B642R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B642R:G -> B628R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B629R:U -> B641R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B641R:A -> B629R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B641R:A -> B642R:G: adjacent_5p upward } 0 15 {B642R:G -> B641R:A: adjacent_3p downward } 0 16 {B642R:G -> B643R:G: adjacent_5p upward } 0 17 {B643R:G -> B642R:G: adjacent_3p downward } 0 18 {B643R:G -> B644R:G: adjacent_5p upward } 0 19 {B644R:G -> B643R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B627R:C 0 1 B628R:C 0 2 B629R:U 0 3 B630R:G 0 4 B640R:C 0 5 B641R:A 0 6 B642R:G 0 7 B643R:G 0 [Edges] 0 {B627R:C -> B628R:C: adjacent_5p upward } 0 1 {B628R:C -> B627R:C: adjacent_3p downward } 0 2 {B627R:C -> B643R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B643R:G -> B627R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B628R:C -> B629R:U: adjacent_5p upward } 0 5 {B629R:U -> B628R:C: adjacent_3p downward } 0 6 {B628R:C -> B642R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B642R:G -> B628R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B629R:U -> B630R:G: adjacent_5p } 0 9 {B630R:G -> B629R:U: adjacent_3p } 0 10 {B629R:U -> B641R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B641R:A -> B629R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B630R:G -> B640R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B640R:C -> B630R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B630R:G -> B641R:A: outward } 0 15 {B641R:A -> B630R:G: outward } 0 16 {B640R:C -> B641R:A: adjacent_5p upward } 0 17 {B641R:A -> B640R:C: adjacent_3p downward } 0 18 {B641R:A -> B642R:G: adjacent_5p upward } 0 19 {B642R:G -> B641R:A: adjacent_3p downward } 0 20 {B642R:G -> B643R:G: adjacent_5p upward } 0 21 {B643R:G -> B642R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B628R:C 0 1 B629R:U 0 2 B630R:G 0 3 B631R:C 0 4 B639R:G 0 5 B640R:C 0 6 B641R:A 0 7 B642R:G 0 [Edges] 0 {B628R:C -> B629R:U: adjacent_5p upward } 0 1 {B629R:U -> B628R:C: adjacent_3p downward } 0 2 {B628R:C -> B642R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B642R:G -> B628R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B629R:U -> B630R:G: adjacent_5p } 0 5 {B630R:G -> B629R:U: adjacent_3p } 0 6 {B629R:U -> B641R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B641R:A -> B629R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B630R:G -> B631R:C: adjacent_5p upward } 0 9 {B631R:C -> B630R:G: adjacent_3p downward } 0 10 {B630R:G -> B640R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B640R:C -> B630R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B630R:G -> B641R:A: outward } 0 13 {B641R:A -> B630R:G: outward } 0 14 {B631R:C -> B639R:G: pairing antiparallel cis Ww/Ww } 0 15 {B639R:G -> B631R:C: pairing antiparallel cis Ww/Ww } 0 16 {B639R:G -> B640R:C: adjacent_5p upward } 0 17 {B640R:C -> B639R:G: adjacent_3p downward } 0 18 {B640R:C -> B641R:A: adjacent_5p upward } 0 19 {B641R:A -> B640R:C: adjacent_3p downward } 0 20 {B641R:A -> B642R:G: adjacent_5p upward } 0 21 {B642R:G -> B641R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B629R:U 0 1 B630R:G 0 2 B631R:C 0 3 B632R:C 0 4 B638R:C 0 5 B639R:G 0 6 B640R:C 0 7 B641R:A 0 [Edges] 0 {B629R:U -> B630R:G: adjacent_5p } 0 1 {B630R:G -> B629R:U: adjacent_3p } 0 2 {B629R:U -> B641R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B641R:A -> B629R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B630R:G -> B631R:C: adjacent_5p upward } 0 5 {B631R:C -> B630R:G: adjacent_3p downward } 0 6 {B630R:G -> B640R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B640R:C -> B630R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B630R:G -> B641R:A: outward } 0 9 {B641R:A -> B630R:G: outward } 0 10 {B631R:C -> B632R:C: adjacent_5p upward } 0 11 {B632R:C -> B631R:C: adjacent_3p downward } 0 12 {B631R:C -> B639R:G: pairing antiparallel cis Ww/Ww } 0 13 {B639R:G -> B631R:C: pairing antiparallel cis Ww/Ww } 0 14 {B632R:C -> B638R:C: pairing antiparallel cis one_hbond 137 Ws/Wh } 0 15 {B638R:C -> B632R:C: pairing antiparallel cis one_hbond 137 Wh/Ws } 0 16 {B638R:C -> B639R:G: adjacent_5p upward } 0 17 {B639R:G -> B638R:C: adjacent_3p downward } 0 18 {B639R:G -> B640R:C: adjacent_5p upward } 0 19 {B640R:C -> B639R:G: adjacent_3p downward } 0 20 {B640R:C -> B641R:A: adjacent_5p upward } 0 21 {B641R:A -> B640R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B650R:C 0 1 B651R:G 0 2 B652R:G 0 3 B653R:G 0 4 B661R:C 0 5 B662R:C 0 6 B663R:C 0 7 B664R:G 0 [Edges] 0 {B650R:C -> B651R:G: adjacent_5p upward } 0 1 {B651R:G -> B650R:C: adjacent_3p downward } 0 2 {B650R:C -> B664R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B664R:G -> B650R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B651R:G -> B652R:G: adjacent_5p upward } 0 5 {B652R:G -> B651R:G: adjacent_3p downward } 0 6 {B651R:G -> B663R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B663R:C -> B651R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B651R:G -> B664R:G: outward } 0 9 {B664R:G -> B651R:G: outward } 0 10 {B652R:G -> B653R:G: adjacent_5p upward } 0 11 {B653R:G -> B652R:G: adjacent_3p downward } 0 12 {B652R:G -> B662R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B662R:C -> B652R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B653R:G -> B661R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B661R:C -> B653R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B661R:C -> B662R:C: adjacent_5p } 0 17 {B662R:C -> B661R:C: adjacent_3p } 0 18 {B662R:C -> B663R:C: adjacent_5p upward } 0 19 {B663R:C -> B662R:C: adjacent_3p downward } 0 20 {B663R:C -> B664R:G: adjacent_5p upward } 0 21 {B664R:G -> B663R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:U 0 3 A5R:C 0 4 A10R:G 0 5 A11R:G 0 6 A12R:U 0 7 A13R:C 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A13R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A12R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A12R:U -> A3R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A4R:U -> A5R:C: adjacent_5p } 0 9 {A5R:C -> A4R:U: adjacent_3p } 0 10 {A4R:U -> A11R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A11R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A5R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A10R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A10R:G -> A11R:G: adjacent_5p upward } 0 15 {A11R:G -> A10R:G: adjacent_3p downward } 0 16 {A11R:G -> A12R:U: adjacent_5p upward } 0 17 {A12R:U -> A11R:G: adjacent_3p downward } 0 18 {A12R:U -> A13R:C: adjacent_5p upward } 0 19 {A13R:C -> A12R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:C 0 2 A5R:U 0 3 A6R:C 0 4 B13R:G 0 5 B14R:C 0 6 B15R:G 0 7 B16R:U 0 [Edges] 0 {A3R:A -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> B16R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B16R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:C -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> B15R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B15R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:U: adjacent_3p downward } 0 10 {A6R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B13R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B13R:G -> B14R:C: adjacent_5p upward } 0 13 {B14R:C -> B13R:G: adjacent_3p downward } 0 14 {B14R:C -> B15R:G: adjacent_5p upward } 0 15 {B15R:G -> B14R:C: adjacent_3p downward } 0 16 {B15R:G -> B16R:U: adjacent_5p upward } 0 17 {B16R:U -> B15R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:U 0 2 A6R:C 0 3 A7R:A 0 4 B12R:U 0 5 B13R:G 0 6 B14R:C 0 7 B15R:G 0 [Edges] 0 {A4R:C -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> B15R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:U: adjacent_3p downward } 0 6 {A6R:C -> A7R:A: adjacent_5p } 0 7 {A7R:A -> A6R:C: adjacent_3p } 0 8 {A6R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B13R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A7R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B12R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:A -> B13R:G: outward } 0 13 {B13R:G -> A7R:A: outward } 0 14 {B12R:U -> B13R:G: adjacent_5p upward } 0 15 {B13R:G -> B12R:U: adjacent_3p downward } 0 16 {B13R:G -> B14R:C: adjacent_5p upward } 0 17 {B14R:C -> B13R:G: adjacent_3p downward } 0 18 {B14R:C -> B15R:G: adjacent_5p upward } 0 19 {B15R:G -> B14R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 12 . . 4 . . . 11 . 14 . . 5 . . 9 13 15 . 16 . 6 . . . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:A 0 2 A8R:C 0 3 A9R:C 0 4 A61R:G 0 5 A62R:G 0 6 A63R:U 0 7 A64R:C 0 [Edges] 0 {A6R:G -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> A64R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A64R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:A -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:A: adjacent_3p downward } 0 6 {A7R:A -> A63R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A63R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A8R:C -> A9R:C: adjacent_5p } 0 9 {A9R:C -> A8R:C: adjacent_3p } 0 10 {A8R:C -> A62R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A62R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:C -> A61R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A61R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A61R:G -> A62R:G: adjacent_5p upward } 0 15 {A62R:G -> A61R:G: adjacent_3p downward } 0 16 {A62R:G -> A63R:U: adjacent_5p upward } 0 17 {A63R:U -> A62R:G: adjacent_3p downward } 0 18 {A63R:U -> A64R:C: adjacent_5p upward } 0 19 {A64R:C -> A63R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:A 0 1 A8R:C 0 2 A9R:C 0 3 A10R:G 0 4 A60R:U 0 5 A61R:G 0 6 A62R:G 0 7 A63R:U 0 [Edges] 0 {A7R:A -> A8R:C: adjacent_5p upward } 0 1 {A8R:C -> A7R:A: adjacent_3p downward } 0 2 {A7R:A -> A63R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A63R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A8R:C -> A9R:C: adjacent_5p } 0 5 {A9R:C -> A8R:C: adjacent_3p } 0 6 {A8R:C -> A62R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A62R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:C -> A10R:G: adjacent_5p } 0 9 {A10R:G -> A9R:C: adjacent_3p } 0 10 {A9R:C -> A61R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A61R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:G -> A60R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A60R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A10R:G -> A61R:G: outward } 0 15 {A61R:G -> A10R:G: outward } 0 16 {A60R:U -> A61R:G: adjacent_5p } 0 17 {A61R:G -> A60R:U: adjacent_3p } 0 18 {A61R:G -> A62R:G: adjacent_5p upward } 0 19 {A62R:G -> A61R:G: adjacent_3p downward } 0 20 {A62R:G -> A63R:U: adjacent_5p upward } 0 21 {A63R:U -> A62R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A13R:G 0 1 A14R:U 0 2 A15R:G 0 3 A16R:U 0 4 A51R:A 0 5 A52R:C 0 6 A53R:G 0 7 A54R:C 0 [Edges] 0 {A13R:G -> A14R:U: adjacent_5p upward } 0 1 {A14R:U -> A13R:G: adjacent_3p downward } 0 2 {A13R:G -> A54R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A54R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A14R:U -> A15R:G: adjacent_5p } 0 5 {A15R:G -> A14R:U: adjacent_3p } 0 6 {A14R:U -> A53R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A53R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A15R:G -> A16R:U: adjacent_5p upward } 0 9 {A16R:U -> A15R:G: adjacent_3p downward } 0 10 {A15R:G -> A52R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A52R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A15R:G -> A53R:G: outward } 0 13 {A53R:G -> A15R:G: outward } 0 14 {A16R:U -> A51R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A51R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A51R:A -> A52R:C: adjacent_5p upward } 0 17 {A52R:C -> A51R:A: adjacent_3p downward } 0 18 {A52R:C -> A53R:G: adjacent_5p upward } 0 19 {A53R:G -> A52R:C: adjacent_3p downward } 0 20 {A53R:G -> A54R:C: adjacent_5p upward } 0 21 {A54R:C -> A53R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A14R:U 0 1 A15R:G 0 2 A16R:U 0 3 A17R:C 0 4 A50R:G 0 5 A51R:A 0 6 A52R:C 0 7 A53R:G 0 [Edges] 0 {A14R:U -> A15R:G: adjacent_5p } 0 1 {A15R:G -> A14R:U: adjacent_3p } 0 2 {A14R:U -> A53R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A53R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A15R:G -> A16R:U: adjacent_5p upward } 0 5 {A16R:U -> A15R:G: adjacent_3p downward } 0 6 {A15R:G -> A52R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A52R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A15R:G -> A53R:G: outward } 0 9 {A53R:G -> A15R:G: outward } 0 10 {A16R:U -> A17R:C: adjacent_5p upward } 0 11 {A17R:C -> A16R:U: adjacent_3p downward } 0 12 {A16R:U -> A51R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A51R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A17R:C -> A50R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A50R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A50R:G -> A51R:A: adjacent_5p upward } 0 17 {A51R:A -> A50R:G: adjacent_3p downward } 0 18 {A51R:A -> A52R:C: adjacent_5p upward } 0 19 {A52R:C -> A51R:A: adjacent_3p downward } 0 20 {A52R:C -> A53R:G: adjacent_5p upward } 0 21 {A53R:G -> A52R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A15R:G 0 1 A16R:U 0 2 A17R:C 0 3 A18R:G 0 4 A21R:A 0 5 A50R:G 0 6 A51R:A 0 7 A52R:C 0 [Edges] 0 {A15R:G -> A16R:U: adjacent_5p upward } 0 1 {A16R:U -> A15R:G: adjacent_3p downward } 0 2 {A15R:G -> A52R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A52R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A16R:U -> A17R:C: adjacent_5p upward } 0 5 {A17R:C -> A16R:U: adjacent_3p downward } 0 6 {A16R:U -> A51R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A51R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A17R:C -> A18R:G: adjacent_5p upward } 0 9 {A18R:G -> A17R:C: adjacent_3p downward } 0 10 {A17R:C -> A50R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A50R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A18R:G -> A21R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A21R:A -> A18R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A18R:G -> A50R:G: outward } 0 15 {A50R:G -> A18R:G: outward } 0 16 {A21R:A -> A50R:G: adjacent_5p } 0 17 {A50R:G -> A21R:A: adjacent_3p } 0 18 {A50R:G -> A51R:A: adjacent_5p upward } 0 19 {A51R:A -> A50R:G: adjacent_3p downward } 0 20 {A51R:A -> A52R:C: adjacent_5p upward } 0 21 {A52R:C -> A51R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:U 0 4 A39R:G 0 5 A40R:C 0 6 A41R:G 0 7 A42R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A42R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A42R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A41R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A40R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A41R:G: outward } 0 13 {A41R:G -> A4R:G: outward } 0 14 {A5R:U -> A39R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A39R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A39R:G -> A40R:C: adjacent_5p upward } 0 17 {A40R:C -> A39R:G: adjacent_3p downward } 0 18 {A40R:C -> A41R:G: adjacent_5p upward } 0 19 {A41R:G -> A40R:C: adjacent_3p downward } 0 20 {A41R:G -> A42R:C: adjacent_5p upward } 0 21 {A42R:C -> A41R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:U 0 3 A6R:U 0 4 A38R:G 0 5 A39R:G 0 6 A40R:C 0 7 A41R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A41R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A40R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A41R:G: outward } 0 9 {A41R:G -> A4R:G: outward } 0 10 {A5R:U -> A6R:U: adjacent_5p } 0 11 {A6R:U -> A5R:U: adjacent_3p } 0 12 {A5R:U -> A39R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A39R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A6R:U -> A38R:G: pairing antiparallel trans one_hbond Ww/Hw } 0 15 {A38R:G -> A6R:U: pairing antiparallel trans one_hbond Hw/Ww } 0 16 {A38R:G -> A39R:G: adjacent_5p upward } 0 17 {A39R:G -> A38R:G: adjacent_3p downward } 0 18 {A39R:G -> A40R:C: adjacent_5p upward } 0 19 {A40R:C -> A39R:G: adjacent_3p downward } 0 20 {A40R:C -> A41R:G: adjacent_5p upward } 0 21 {A41R:G -> A40R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A11R:A 0 1 A12R:G 0 2 A13R:G 0 3 A14R:U 0 4 A33R:G 0 5 A34R:C 0 6 A35R:C 0 7 A36R:A 0 [Edges] 0 {A11R:A -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:A: adjacent_3p downward } 0 2 {A11R:A -> A36R:A: pairing antiparallel trans one_hbond 41 Hw/Ss } 0 3 {A36R:A -> A11R:A: pairing antiparallel trans one_hbond 41 Ss/Hw } 0 4 {A12R:G -> A13R:G: adjacent_5p upward } 0 5 {A13R:G -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> A35R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A35R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:G -> A14R:U: adjacent_5p upward } 0 9 {A14R:U -> A13R:G: adjacent_3p downward } 0 10 {A13R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A34R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:U -> A33R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A33R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A33R:G -> A34R:C: adjacent_5p upward } 0 15 {A34R:C -> A33R:G: adjacent_3p downward } 0 16 {A34R:C -> A35R:C: adjacent_5p upward } 0 17 {A35R:C -> A34R:C: adjacent_3p downward } 0 18 {A35R:C -> A36R:A: adjacent_5p upward } 0 19 {A36R:A -> A35R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:G 0 2 A14R:U 0 3 A15R:C 0 4 A32R:A 0 5 A33R:G 0 6 A34R:C 0 7 A35R:C 0 [Edges] 0 {A12R:G -> A13R:G: adjacent_5p upward } 0 1 {A13R:G -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> A35R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A35R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:G -> A14R:U: adjacent_5p upward } 0 5 {A14R:U -> A13R:G: adjacent_3p downward } 0 6 {A13R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A34R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:U -> A15R:C: adjacent_5p upward } 0 9 {A15R:C -> A14R:U: adjacent_3p downward } 0 10 {A14R:U -> A33R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A33R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A15R:C -> A32R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 13 {A32R:A -> A15R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 14 {A32R:A -> A33R:G: adjacent_5p upward } 0 15 {A33R:G -> A32R:A: adjacent_3p downward } 0 16 {A33R:G -> A34R:C: adjacent_5p upward } 0 17 {A34R:C -> A33R:G: adjacent_3p downward } 0 18 {A34R:C -> A35R:C: adjacent_5p upward } 0 19 {A35R:C -> A34R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A15R:C 0 1 A16R:A 0 2 A17R:G 0 3 A18R:G 0 4 A29R:A 0 5 A30R:G 0 6 A31R:C 0 7 A32R:A 0 [Edges] 0 {A15R:C -> A16R:A: adjacent_5p } 0 1 {A16R:A -> A15R:C: adjacent_3p } 0 2 {A15R:C -> A31R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 3 {A31R:C -> A15R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 4 {A15R:C -> A32R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 5 {A32R:A -> A15R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 6 {A16R:A -> A17R:G: adjacent_5p upward } 0 7 {A17R:G -> A16R:A: adjacent_3p downward } 0 8 {A16R:A -> A32R:A: outward } 0 9 {A32R:A -> A16R:A: outward } 0 10 {A17R:G -> A18R:G: adjacent_5p upward } 0 11 {A18R:G -> A17R:G: adjacent_3p downward } 0 12 {A18R:G -> A29R:A: pairing antiparallel cis VIII Ww/Ww } 0 13 {A29R:A -> A18R:G: pairing antiparallel cis VIII Ww/Ww } 0 14 {A29R:A -> A30R:G: adjacent_5p upward } 0 15 {A30R:G -> A29R:A: adjacent_3p downward } 0 16 {A30R:G -> A31R:C: adjacent_5p } 0 17 {A31R:C -> A30R:G: adjacent_3p } 0 18 {A31R:C -> A32R:A: adjacent_5p } 0 19 {A32R:A -> A31R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . . 8 2 . 7 . 10 . . . . 3 . . 11 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 3 . . . . 17 . 18 7 5 9 . . . . 19 . [GraphModel] [Vertices] 0 A18R:G 0 1 A19R:U 0 2 A20R:C 0 3 A21R:C 0 4 A26R:G 0 5 A27R:G 0 6 A28R:A 0 7 A29R:A 0 [Edges] 0 {A18R:G -> A19R:U: adjacent_5p upward } 0 1 {A19R:U -> A18R:G: adjacent_3p downward } 0 2 {A18R:G -> A29R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A29R:A -> A18R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A19R:U -> A20R:C: adjacent_5p upward } 0 5 {A20R:C -> A19R:U: adjacent_3p downward } 0 6 {A19R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A28R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A20R:C -> A21R:C: adjacent_5p upward } 0 9 {A21R:C -> A20R:C: adjacent_3p downward } 0 10 {A20R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A27R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A21R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A26R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A26R:G -> A27R:G: adjacent_5p upward } 0 15 {A27R:G -> A26R:G: adjacent_3p downward } 0 16 {A27R:G -> A28R:A: adjacent_5p upward } 0 17 {A28R:A -> A27R:G: adjacent_3p downward } 0 18 {A28R:A -> A29R:A: adjacent_5p upward } 0 19 {A29R:A -> A28R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A19R:U 0 1 A20R:C 0 2 A21R:C 0 3 A22R:G 0 4 A25R:A 0 5 A26R:G 0 6 A27R:G 0 7 A28R:A 0 [Edges] 0 {A19R:U -> A20R:C: adjacent_5p upward } 0 1 {A20R:C -> A19R:U: adjacent_3p downward } 0 2 {A19R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A28R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A20R:C -> A21R:C: adjacent_5p upward } 0 5 {A21R:C -> A20R:C: adjacent_3p downward } 0 6 {A20R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A27R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A21R:C -> A22R:G: adjacent_5p upward } 0 9 {A22R:G -> A21R:C: adjacent_3p downward } 0 10 {A21R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A26R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A22R:G -> A25R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {A25R:A -> A22R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {A25R:A -> A26R:G: adjacent_5p upward } 0 15 {A26R:G -> A25R:A: adjacent_3p downward } 0 16 {A26R:G -> A27R:G: adjacent_5p upward } 0 17 {A27R:G -> A26R:G: adjacent_3p downward } 0 18 {A27R:G -> A28R:A: adjacent_5p upward } 0 19 {A28R:A -> A27R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A44R:A 0 1 A45R:C 0 2 A46R:G 0 3 A47R:G 0 4 B73R:A 0 5 B74R:C 0 6 B75R:G 0 7 B76R:U 0 [Edges] 0 {A44R:A -> A45R:C: adjacent_5p upward } 0 1 {A45R:C -> A44R:A: adjacent_3p downward } 0 2 {A44R:A -> B76R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B76R:U -> A44R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A45R:C -> A46R:G: adjacent_5p upward } 0 5 {A46R:G -> A45R:C: adjacent_3p downward } 0 6 {A45R:C -> B75R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B75R:G -> A45R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A46R:G -> A47R:G: adjacent_5p upward } 0 9 {A47R:G -> A46R:G: adjacent_3p downward } 0 10 {A46R:G -> B74R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B74R:C -> A46R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A46R:G -> B75R:G: outward } 0 13 {B75R:G -> A46R:G: outward } 0 14 {A47R:G -> B73R:A: pairing antiparallel cis VIII Ww/Ww } 0 15 {B73R:A -> A47R:G: pairing antiparallel cis VIII Ww/Ww } 0 16 {B73R:A -> B74R:C: adjacent_5p upward } 0 17 {B74R:C -> B73R:A: adjacent_3p downward } 0 18 {B74R:C -> B75R:G: adjacent_5p upward } 0 19 {B75R:G -> B74R:C: adjacent_3p downward } 0 20 {B75R:G -> B76R:U: adjacent_5p upward } 0 21 {B76R:U -> B75R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 B102R:G 0 1 B103R:C 0 2 B104R:C 0 3 B105R:G 0 4 B133R:C 0 5 B134R:G 0 6 B135R:G 0 7 B136R:C 0 [Edges] 0 {B102R:G -> B103R:C: adjacent_5p upward } 0 1 {B103R:C -> B102R:G: adjacent_3p downward } 0 2 {B102R:G -> B136R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B136R:C -> B102R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B103R:C -> B104R:C: adjacent_5p upward } 0 5 {B104R:C -> B103R:C: adjacent_3p downward } 0 6 {B103R:C -> B135R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B135R:G -> B103R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B104R:C -> B105R:G: adjacent_5p } 0 9 {B105R:G -> B104R:C: adjacent_3p } 0 10 {B104R:C -> B134R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B134R:G -> B104R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B105R:G -> B133R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B133R:C -> B105R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B105R:G -> B134R:G: outward } 0 15 {B134R:G -> B105R:G: outward } 0 16 {B133R:C -> B134R:G: adjacent_5p upward } 0 17 {B134R:G -> B133R:C: adjacent_3p downward } 0 18 {B134R:G -> B135R:G: adjacent_5p upward } 0 19 {B135R:G -> B134R:G: adjacent_3p downward } 0 20 {B135R:G -> B136R:C: adjacent_5p upward } 0 21 {B136R:C -> B135R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B103R:C 0 1 B104R:C 0 2 B105R:G 0 3 B106R:G 0 4 B132R:C 0 5 B133R:C 0 6 B134R:G 0 7 B135R:G 0 [Edges] 0 {B103R:C -> B104R:C: adjacent_5p upward } 0 1 {B104R:C -> B103R:C: adjacent_3p downward } 0 2 {B103R:C -> B135R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B135R:G -> B103R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B104R:C -> B105R:G: adjacent_5p } 0 5 {B105R:G -> B104R:C: adjacent_3p } 0 6 {B104R:C -> B134R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B134R:G -> B104R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B105R:G -> B106R:G: adjacent_5p upward } 0 9 {B106R:G -> B105R:G: adjacent_3p downward } 0 10 {B105R:G -> B133R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B133R:C -> B105R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B105R:G -> B134R:G: outward } 0 13 {B134R:G -> B105R:G: outward } 0 14 {B106R:G -> B132R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B132R:C -> B106R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B132R:C -> B133R:C: adjacent_5p } 0 17 {B133R:C -> B132R:C: adjacent_3p } 0 18 {B133R:C -> B134R:G: adjacent_5p upward } 0 19 {B134R:G -> B133R:C: adjacent_3p downward } 0 20 {B134R:G -> B135R:G: adjacent_5p upward } 0 21 {B135R:G -> B134R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B104R:C 0 1 B105R:G 0 2 B106R:G 0 3 B107R:C 0 4 B131R:G 0 5 B132R:C 0 6 B133R:C 0 7 B134R:G 0 [Edges] 0 {B104R:C -> B105R:G: adjacent_5p } 0 1 {B105R:G -> B104R:C: adjacent_3p } 0 2 {B104R:C -> B134R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B134R:G -> B104R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B105R:G -> B106R:G: adjacent_5p upward } 0 5 {B106R:G -> B105R:G: adjacent_3p downward } 0 6 {B105R:G -> B133R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B133R:C -> B105R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B105R:G -> B134R:G: outward } 0 9 {B134R:G -> B105R:G: outward } 0 10 {B106R:G -> B107R:C: adjacent_5p upward } 0 11 {B107R:C -> B106R:G: adjacent_3p downward } 0 12 {B106R:G -> B132R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B132R:C -> B106R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B107R:C -> B131R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B131R:G -> B107R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B131R:G -> B132R:C: adjacent_5p upward } 0 17 {B132R:C -> B131R:G: adjacent_3p downward } 0 18 {B132R:C -> B133R:C: adjacent_5p } 0 19 {B133R:C -> B132R:C: adjacent_3p } 0 20 {B133R:C -> B134R:G: adjacent_5p upward } 0 21 {B134R:G -> B133R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B111R:G 0 1 B112R:U 0 2 B113R:C 0 3 B114R:C 0 4 B169R:G 0 5 B170R:G 0 6 B171R:A 0 7 B172R:C 0 [Edges] 0 {B111R:G -> B112R:U: adjacent_5p upward } 0 1 {B112R:U -> B111R:G: adjacent_3p downward } 0 2 {B111R:G -> B172R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B172R:C -> B111R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B112R:U -> B113R:C: adjacent_5p upward } 0 5 {B113R:C -> B112R:U: adjacent_3p downward } 0 6 {B112R:U -> B171R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B171R:A -> B112R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B113R:C -> B114R:C: adjacent_5p } 0 9 {B114R:C -> B113R:C: adjacent_3p } 0 10 {B113R:C -> B170R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B170R:G -> B113R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B114R:C -> B169R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B169R:G -> B114R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B169R:G -> B170R:G: adjacent_5p upward } 0 15 {B170R:G -> B169R:G: adjacent_3p downward } 0 16 {B170R:G -> B171R:A: adjacent_5p upward } 0 17 {B171R:A -> B170R:G: adjacent_3p downward } 0 18 {B171R:A -> B172R:C: adjacent_5p upward } 0 19 {B172R:C -> B171R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B112R:U 0 1 B113R:C 0 2 B114R:C 0 3 B115R:C 0 4 B168R:G 0 5 B169R:G 0 6 B170R:G 0 7 B171R:A 0 [Edges] 0 {B112R:U -> B113R:C: adjacent_5p upward } 0 1 {B113R:C -> B112R:U: adjacent_3p downward } 0 2 {B112R:U -> B171R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B171R:A -> B112R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B113R:C -> B114R:C: adjacent_5p } 0 5 {B114R:C -> B113R:C: adjacent_3p } 0 6 {B113R:C -> B170R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B170R:G -> B113R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B114R:C -> B115R:C: adjacent_5p upward } 0 9 {B115R:C -> B114R:C: adjacent_3p downward } 0 10 {B114R:C -> B169R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B169R:G -> B114R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B115R:C -> B168R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B168R:G -> B115R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B168R:G -> B169R:G: adjacent_5p upward } 0 15 {B169R:G -> B168R:G: adjacent_3p downward } 0 16 {B169R:G -> B170R:G: adjacent_5p upward } 0 17 {B170R:G -> B169R:G: adjacent_3p downward } 0 18 {B170R:G -> B171R:A: adjacent_5p upward } 0 19 {B171R:A -> B170R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B113R:C 0 1 B114R:C 0 2 B115R:C 0 3 B116R:A 0 4 B167R:U 0 5 B168R:G 0 6 B169R:G 0 7 B170R:G 0 [Edges] 0 {B113R:C -> B114R:C: adjacent_5p } 0 1 {B114R:C -> B113R:C: adjacent_3p } 0 2 {B113R:C -> B170R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B170R:G -> B113R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B114R:C -> B115R:C: adjacent_5p upward } 0 5 {B115R:C -> B114R:C: adjacent_3p downward } 0 6 {B114R:C -> B169R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B169R:G -> B114R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B115R:C -> B116R:A: adjacent_5p upward } 0 9 {B116R:A -> B115R:C: adjacent_3p downward } 0 10 {B115R:C -> B168R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B168R:G -> B115R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B116R:A -> B167R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B167R:U -> B116R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B116R:A -> B168R:G: outward } 0 15 {B168R:G -> B116R:A: outward } 0 16 {B167R:U -> B168R:G: adjacent_5p } 0 17 {B168R:G -> B167R:U: adjacent_3p } 0 18 {B168R:G -> B169R:G: adjacent_5p upward } 0 19 {B169R:G -> B168R:G: adjacent_3p downward } 0 20 {B169R:G -> B170R:G: adjacent_5p upward } 0 21 {B170R:G -> B169R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B143R:A 0 1 B144R:C 0 2 B145R:A 0 3 B146R:C 0 4 B159R:G 0 5 B160R:U 0 6 B161R:G 0 7 B162R:G 0 [Edges] 0 {B143R:A -> B144R:C: adjacent_5p upward } 0 1 {B144R:C -> B143R:A: adjacent_3p downward } 0 2 {B143R:A -> B162R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {B162R:G -> B143R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {B144R:C -> B145R:A: adjacent_5p upward } 0 5 {B145R:A -> B144R:C: adjacent_3p downward } 0 6 {B144R:C -> B161R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B161R:G -> B144R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B145R:A -> B146R:C: adjacent_5p upward } 0 9 {B146R:C -> B145R:A: adjacent_3p downward } 0 10 {B145R:A -> B160R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B160R:U -> B145R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B145R:A -> B161R:G: outward } 0 13 {B161R:G -> B145R:A: outward } 0 14 {B146R:C -> B159R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B159R:G -> B146R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B159R:G -> B160R:U: adjacent_5p upward } 0 17 {B160R:U -> B159R:G: adjacent_3p downward } 0 18 {B160R:U -> B161R:G: adjacent_5p upward } 0 19 {B161R:G -> B160R:U: adjacent_3p downward } 0 20 {B161R:G -> B162R:G: adjacent_5p upward } 0 21 {B162R:G -> B161R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B144R:C 0 1 B145R:A 0 2 B146R:C 0 3 B147R:C 0 4 B158R:G 0 5 B159R:G 0 6 B160R:U 0 7 B161R:G 0 [Edges] 0 {B144R:C -> B145R:A: adjacent_5p upward } 0 1 {B145R:A -> B144R:C: adjacent_3p downward } 0 2 {B144R:C -> B161R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B161R:G -> B144R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B145R:A -> B146R:C: adjacent_5p upward } 0 5 {B146R:C -> B145R:A: adjacent_3p downward } 0 6 {B145R:A -> B160R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B160R:U -> B145R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B145R:A -> B161R:G: outward } 0 9 {B161R:G -> B145R:A: outward } 0 10 {B146R:C -> B147R:C: adjacent_5p upward } 0 11 {B147R:C -> B146R:C: adjacent_3p downward } 0 12 {B146R:C -> B159R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B159R:G -> B146R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B147R:C -> B158R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B158R:G -> B147R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B158R:G -> B159R:G: adjacent_5p upward } 0 17 {B159R:G -> B158R:G: adjacent_3p downward } 0 18 {B159R:G -> B160R:U: adjacent_5p upward } 0 19 {B160R:U -> B159R:G: adjacent_3p downward } 0 20 {B160R:U -> B161R:G: adjacent_5p upward } 0 21 {B161R:G -> B160R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:A 0 3 A5R:U 0 4 A17R:A 0 5 A18R:U 0 6 A19R:C 0 7 A20R:U 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A20R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A20R:U -> A2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A3R:G -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A18R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A17R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A17R:A -> A18R:U: adjacent_5p upward } 0 15 {A18R:U -> A17R:A: adjacent_3p downward } 0 16 {A18R:U -> A19R:C: adjacent_5p upward } 0 17 {A19R:C -> A18R:U: adjacent_3p downward } 0 18 {A19R:C -> A20R:U: adjacent_5p upward } 0 19 {A20R:U -> A19R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:A 0 2 A5R:U 0 3 A6R:C 0 4 A16R:G 0 5 A17R:A 0 6 A18R:U 0 7 A19R:C 0 [Edges] 0 {A3R:G -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A18R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:U -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:U: adjacent_3p downward } 0 10 {A5R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A17R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A16R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A16R:G -> A17R:A: adjacent_5p upward } 0 15 {A17R:A -> A16R:G: adjacent_3p downward } 0 16 {A17R:A -> A18R:U: adjacent_5p upward } 0 17 {A18R:U -> A17R:A: adjacent_3p downward } 0 18 {A18R:U -> A19R:C: adjacent_5p upward } 0 19 {A19R:C -> A18R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:G 0 3 A5R:A 0 4 B24R:C 0 5 B25R:C 0 6 B26R:A 0 7 B27R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B27R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> B26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B26R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B25R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> B26R:A: outward } 0 13 {B26R:A -> A4R:G: outward } 0 14 {A5R:A -> B24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 15 {B24R:C -> A5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 16 {B24R:C -> B25R:C: adjacent_5p } 0 17 {B25R:C -> B24R:C: adjacent_3p } 0 18 {B25R:C -> B26R:A: adjacent_5p upward } 0 19 {B26R:A -> B25R:C: adjacent_3p downward } 0 20 {B26R:A -> B27R:C: adjacent_5p upward } 0 21 {B27R:C -> B26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:A 0 3 A6R:C 0 4 B23R:A 0 5 B24R:C 0 6 B25R:C 0 7 B26R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> B26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B26R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B25R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> B26R:A: outward } 0 9 {B26R:A -> A4R:G: outward } 0 10 {A5R:A -> A6R:C: adjacent_5p upward } 0 11 {A6R:C -> A5R:A: adjacent_3p downward } 0 12 {A5R:A -> B24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 13 {B24R:C -> A5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 14 {A6R:C -> B23R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 15 {B23R:A -> A6R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 16 {B23R:A -> B24R:C: adjacent_5p upward } 0 17 {B24R:C -> B23R:A: adjacent_3p downward } 0 18 {B24R:C -> B25R:C: adjacent_5p } 0 19 {B25R:C -> B24R:C: adjacent_3p } 0 20 {B25R:C -> B26R:A: adjacent_5p upward } 0 21 {B26R:A -> B25R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:C 0 3 A7R:C 0 4 B22R:G 0 5 B23R:A 0 6 B24R:C 0 7 B25R:C 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B25R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> B24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 7 {B24R:C -> A5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 8 {A6R:C -> A7R:C: adjacent_5p upward } 0 9 {A7R:C -> A6R:C: adjacent_3p downward } 0 10 {A6R:C -> B23R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 11 {B23R:A -> A6R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 12 {A7R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B22R:G -> B23R:A: adjacent_5p upward } 0 15 {B23R:A -> B22R:G: adjacent_3p downward } 0 16 {B23R:A -> B24R:C: adjacent_5p upward } 0 17 {B24R:C -> B23R:A: adjacent_3p downward } 0 18 {B24R:C -> B25R:C: adjacent_5p } 0 19 {B25R:C -> B24R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:C 0 2 A7R:C 0 3 A8R:U 0 4 B21R:G 0 5 B22R:G 0 6 B23R:A 0 7 B24R:C 0 [Edges] 0 {A5R:A -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> B24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 3 {B24R:C -> A5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 4 {A6R:C -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:C: adjacent_3p downward } 0 6 {A6R:C -> B23R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 7 {B23R:A -> A6R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 8 {A7R:C -> A8R:U: adjacent_5p upward } 0 9 {A8R:U -> A7R:C: adjacent_3p downward } 0 10 {A7R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:U -> B21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {B21R:G -> A8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {B21R:G -> B22R:G: adjacent_5p upward } 0 15 {B22R:G -> B21R:G: adjacent_3p downward } 0 16 {B22R:G -> B23R:A: adjacent_5p upward } 0 17 {B23R:A -> B22R:G: adjacent_3p downward } 0 18 {B23R:A -> B24R:C: adjacent_5p upward } 0 19 {B24R:C -> B23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:C 0 2 A8R:U 0 3 A9R:C 0 4 B20R:G 0 5 B21R:G 0 6 B22R:G 0 7 B23R:A 0 [Edges] 0 {A6R:C -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:C: adjacent_3p downward } 0 2 {A6R:C -> B23R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 3 {B23R:A -> A6R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 4 {A7R:C -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:C: adjacent_3p downward } 0 6 {A7R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:U -> A9R:C: adjacent_5p } 0 9 {A9R:C -> A8R:U: adjacent_3p } 0 10 {A8R:U -> B21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B21R:G -> A8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A9R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B20R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B20R:G -> B21R:G: adjacent_5p upward } 0 15 {B21R:G -> B20R:G: adjacent_3p downward } 0 16 {B21R:G -> B22R:G: adjacent_5p upward } 0 17 {B22R:G -> B21R:G: adjacent_3p downward } 0 18 {B22R:G -> B23R:A: adjacent_5p upward } 0 19 {B23R:A -> B22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:U 0 2 A9R:C 0 3 A10R:C 0 4 B19R:G 0 5 B20R:G 0 6 B21R:G 0 7 B22R:G 0 [Edges] 0 {A7R:C -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:U -> A9R:C: adjacent_5p } 0 5 {A9R:C -> A8R:U: adjacent_3p } 0 6 {A8R:U -> B21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B21R:G -> A8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A9R:C -> A10R:C: adjacent_5p upward } 0 9 {A10R:C -> A9R:C: adjacent_3p downward } 0 10 {A9R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B20R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B19R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B19R:G -> B20R:G: adjacent_5p upward } 0 15 {B20R:G -> B19R:G: adjacent_3p downward } 0 16 {B20R:G -> B21R:G: adjacent_5p upward } 0 17 {B21R:G -> B20R:G: adjacent_3p downward } 0 18 {B21R:G -> B22R:G: adjacent_5p upward } 0 19 {B22R:G -> B21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:C 0 2 A10R:C 0 3 A11R:C 0 4 B18R:G 0 5 B19R:G 0 6 B20R:G 0 7 B21R:G 0 [Edges] 0 {A8R:U -> A9R:C: adjacent_5p } 0 1 {A9R:C -> A8R:U: adjacent_3p } 0 2 {A8R:U -> B21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B21R:G -> A8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A9R:C -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:C: adjacent_3p downward } 0 6 {A9R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B20R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:C -> A11R:C: adjacent_5p upward } 0 9 {A11R:C -> A10R:C: adjacent_3p downward } 0 10 {A10R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B19R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A11R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B18R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B18R:G -> B19R:G: adjacent_5p upward } 0 15 {B19R:G -> B18R:G: adjacent_3p downward } 0 16 {B19R:G -> B20R:G: adjacent_5p upward } 0 17 {B20R:G -> B19R:G: adjacent_3p downward } 0 18 {B20R:G -> B21R:G: adjacent_5p upward } 0 19 {B21R:G -> B20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A9R:C 0 1 A10R:C 0 2 A11R:C 0 3 A12R:G 0 4 B17R:C 0 5 B18R:G 0 6 B19R:G 0 7 B20R:G 0 [Edges] 0 {A9R:C -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:C: adjacent_3p downward } 0 2 {A9R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B20R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:C -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:C: adjacent_3p downward } 0 6 {A10R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B19R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:C -> A12R:G: adjacent_5p upward } 0 9 {A12R:G -> A11R:C: adjacent_3p downward } 0 10 {A11R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B18R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B17R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A12R:G -> B18R:G: outward } 0 15 {B18R:G -> A12R:G: outward } 0 16 {B17R:C -> B18R:G: adjacent_5p } 0 17 {B18R:G -> B17R:C: adjacent_3p } 0 18 {B18R:G -> B19R:G: adjacent_5p upward } 0 19 {B19R:G -> B18R:G: adjacent_3p downward } 0 20 {B19R:G -> B20R:G: adjacent_5p upward } 0 21 {B20R:G -> B19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:C 0 1 A11R:C 0 2 A12R:G 0 3 A13R:G 0 4 B16R:G 0 5 B17R:C 0 6 B18R:G 0 7 B19R:G 0 [Edges] 0 {A10R:C -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:C: adjacent_3p downward } 0 2 {A10R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B19R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:C -> A12R:G: adjacent_5p upward } 0 5 {A12R:G -> A11R:C: adjacent_3p downward } 0 6 {A11R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B18R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> A13R:G: adjacent_5p } 0 9 {A13R:G -> A12R:G: adjacent_3p } 0 10 {A12R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B17R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:G -> B18R:G: outward } 0 13 {B18R:G -> A12R:G: outward } 0 14 {A13R:G -> B16R:G: pairing antiparallel trans 115 Bh/Ww } 0 15 {B16R:G -> A13R:G: pairing antiparallel trans 115 Ww/Bh } 0 16 {B16R:G -> B17R:C: adjacent_5p upward } 0 17 {B17R:C -> B16R:G: adjacent_3p downward } 0 18 {B17R:C -> B18R:G: adjacent_5p } 0 19 {B18R:G -> B17R:C: adjacent_3p } 0 20 {B18R:G -> B19R:G: adjacent_5p upward } 0 21 {B19R:G -> B18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:G 0 2 A13R:G 0 3 A14R:G 0 4 B15R:A 0 5 B16R:G 0 6 B17R:C 0 7 B18R:G 0 [Edges] 0 {A11R:C -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:C: adjacent_3p downward } 0 2 {A11R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B18R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:G -> A13R:G: adjacent_5p } 0 5 {A13R:G -> A12R:G: adjacent_3p } 0 6 {A12R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B17R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> B18R:G: outward } 0 9 {B18R:G -> A12R:G: outward } 0 10 {A13R:G -> A14R:G: adjacent_5p upward } 0 11 {A14R:G -> A13R:G: adjacent_3p downward } 0 12 {A13R:G -> B16R:G: pairing antiparallel trans 115 Bh/Ww } 0 13 {B16R:G -> A13R:G: pairing antiparallel trans 115 Ww/Bh } 0 14 {A14R:G -> B15R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 15 {B15R:A -> A14R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 16 {B15R:A -> B16R:G: adjacent_5p upward } 0 17 {B16R:G -> B15R:A: adjacent_3p downward } 0 18 {B16R:G -> B17R:C: adjacent_5p upward } 0 19 {B17R:C -> B16R:G: adjacent_3p downward } 0 20 {B17R:C -> B18R:G: adjacent_5p } 0 21 {B18R:G -> B17R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A13R:G 0 1 A14R:G 0 2 A15R:A 0 3 A16R:G 0 4 B13R:G 0 5 B14R:G 0 6 B15R:A 0 7 B16R:G 0 [Edges] 0 {A13R:G -> A14R:G: adjacent_5p upward } 0 1 {A14R:G -> A13R:G: adjacent_3p downward } 0 2 {A13R:G -> B16R:G: pairing antiparallel trans 115 Bh/Ww } 0 3 {B16R:G -> A13R:G: pairing antiparallel trans 115 Ww/Bh } 0 4 {A14R:G -> A15R:A: adjacent_5p upward } 0 5 {A15R:A -> A14R:G: adjacent_3p downward } 0 6 {A14R:G -> B15R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {B15R:A -> A14R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A15R:A -> A16R:G: adjacent_5p upward } 0 9 {A16R:G -> A15R:A: adjacent_3p downward } 0 10 {A16R:G -> B13R:G: pairing antiparallel trans 115 Ww/Bh } 0 11 {B13R:G -> A16R:G: pairing antiparallel trans 115 Bh/Ww } 0 12 {B13R:G -> B14R:G: adjacent_5p upward } 0 13 {B14R:G -> B13R:G: adjacent_3p downward } 0 14 {B14R:G -> B15R:A: adjacent_5p upward } 0 15 {B15R:A -> B14R:G: adjacent_3p downward } 0 16 {B15R:A -> B16R:G: adjacent_5p upward } 0 17 {B16R:G -> B15R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A14R:G 0 1 A15R:A 0 2 A16R:G 0 3 A17R:C 0 4 B12R:G 0 5 B13R:G 0 6 B14R:G 0 7 B15R:A 0 [Edges] 0 {A14R:G -> A15R:A: adjacent_5p upward } 0 1 {A15R:A -> A14R:G: adjacent_3p downward } 0 2 {A14R:G -> B15R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B15R:A -> A14R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A15R:A -> A16R:G: adjacent_5p upward } 0 5 {A16R:G -> A15R:A: adjacent_3p downward } 0 6 {A16R:G -> A17R:C: adjacent_5p upward } 0 7 {A17R:C -> A16R:G: adjacent_3p downward } 0 8 {A16R:G -> B13R:G: pairing antiparallel trans 115 Ww/Bh } 0 9 {B13R:G -> A16R:G: pairing antiparallel trans 115 Bh/Ww } 0 10 {A17R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B12R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B12R:G -> B13R:G: adjacent_5p } 0 13 {B13R:G -> B12R:G: adjacent_3p } 0 14 {B13R:G -> B14R:G: adjacent_5p upward } 0 15 {B14R:G -> B13R:G: adjacent_3p downward } 0 16 {B14R:G -> B15R:A: adjacent_5p upward } 0 17 {B15R:A -> B14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A16R:G 0 1 A17R:C 0 2 A18R:G 0 3 A19R:G 0 4 B10R:C 0 5 B11R:C 0 6 B12R:G 0 7 B13R:G 0 [Edges] 0 {A16R:G -> A17R:C: adjacent_5p upward } 0 1 {A17R:C -> A16R:G: adjacent_3p downward } 0 2 {A16R:G -> B13R:G: pairing antiparallel trans 115 Ww/Bh } 0 3 {B13R:G -> A16R:G: pairing antiparallel trans 115 Bh/Ww } 0 4 {A17R:C -> A18R:G: adjacent_5p } 0 5 {A18R:G -> A17R:C: adjacent_3p } 0 6 {A17R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A18R:G -> A19R:G: adjacent_5p upward } 0 9 {A19R:G -> A18R:G: adjacent_3p downward } 0 10 {A18R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B11R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A18R:G -> B12R:G: outward } 0 13 {B12R:G -> A18R:G: outward } 0 14 {A19R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B10R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B10R:C -> B11R:C: adjacent_5p upward } 0 17 {B11R:C -> B10R:C: adjacent_3p downward } 0 18 {B11R:C -> B12R:G: adjacent_5p } 0 19 {B12R:G -> B11R:C: adjacent_3p } 0 20 {B12R:G -> B13R:G: adjacent_5p } 0 21 {B13R:G -> B12R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A17R:C 0 1 A18R:G 0 2 A19R:G 0 3 A20R:G 0 4 B9R:C 0 5 B10R:C 0 6 B11R:C 0 7 B12R:G 0 [Edges] 0 {A17R:C -> A18R:G: adjacent_5p } 0 1 {A18R:G -> A17R:C: adjacent_3p } 0 2 {A17R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B12R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A18R:G -> A19R:G: adjacent_5p upward } 0 5 {A19R:G -> A18R:G: adjacent_3p downward } 0 6 {A18R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B11R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A18R:G -> B12R:G: outward } 0 9 {B12R:G -> A18R:G: outward } 0 10 {A19R:G -> A20R:G: adjacent_5p upward } 0 11 {A20R:G -> A19R:G: adjacent_3p downward } 0 12 {A19R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B10R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A20R:G -> B9R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B9R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B9R:C -> B10R:C: adjacent_5p } 0 17 {B10R:C -> B9R:C: adjacent_3p } 0 18 {B10R:C -> B11R:C: adjacent_5p upward } 0 19 {B11R:C -> B10R:C: adjacent_3p downward } 0 20 {B11R:C -> B12R:G: adjacent_5p } 0 21 {B12R:G -> B11R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A18R:G 0 1 A19R:G 0 2 A20R:G 0 3 A21R:G 0 4 B8R:U 0 5 B9R:C 0 6 B10R:C 0 7 B11R:C 0 [Edges] 0 {A18R:G -> A19R:G: adjacent_5p upward } 0 1 {A19R:G -> A18R:G: adjacent_3p downward } 0 2 {A18R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B11R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A19R:G -> A20R:G: adjacent_5p upward } 0 5 {A20R:G -> A19R:G: adjacent_3p downward } 0 6 {A19R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B10R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A20R:G -> A21R:G: adjacent_5p upward } 0 9 {A21R:G -> A20R:G: adjacent_3p downward } 0 10 {A20R:G -> B9R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B9R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A21R:G -> B8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B8R:U -> A21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A21R:G -> B9R:C: outward } 0 15 {B9R:C -> A21R:G: outward } 0 16 {B8R:U -> B9R:C: adjacent_5p } 0 17 {B9R:C -> B8R:U: adjacent_3p } 0 18 {B9R:C -> B10R:C: adjacent_5p } 0 19 {B10R:C -> B9R:C: adjacent_3p } 0 20 {B10R:C -> B11R:C: adjacent_5p upward } 0 21 {B11R:C -> B10R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A19R:G 0 1 A20R:G 0 2 A21R:G 0 3 A22R:G 0 4 B7R:C 0 5 B8R:U 0 6 B9R:C 0 7 B10R:C 0 [Edges] 0 {A19R:G -> A20R:G: adjacent_5p upward } 0 1 {A20R:G -> A19R:G: adjacent_3p downward } 0 2 {A19R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B10R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A20R:G -> A21R:G: adjacent_5p upward } 0 5 {A21R:G -> A20R:G: adjacent_3p downward } 0 6 {A20R:G -> B9R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B9R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A21R:G -> A22R:G: adjacent_5p upward } 0 9 {A22R:G -> A21R:G: adjacent_3p downward } 0 10 {A21R:G -> B8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B8R:U -> A21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A21R:G -> B9R:C: outward } 0 13 {B9R:C -> A21R:G: outward } 0 14 {A22R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B7R:C -> B8R:U: adjacent_5p upward } 0 17 {B8R:U -> B7R:C: adjacent_3p downward } 0 18 {B8R:U -> B9R:C: adjacent_5p } 0 19 {B9R:C -> B8R:U: adjacent_3p } 0 20 {B9R:C -> B10R:C: adjacent_5p } 0 21 {B10R:C -> B9R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A20R:G 0 1 A21R:G 0 2 A22R:G 0 3 A23R:A 0 4 B6R:C 0 5 B7R:C 0 6 B8R:U 0 7 B9R:C 0 [Edges] 0 {A20R:G -> A21R:G: adjacent_5p upward } 0 1 {A21R:G -> A20R:G: adjacent_3p downward } 0 2 {A20R:G -> B9R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B9R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A21R:G -> A22R:G: adjacent_5p upward } 0 5 {A22R:G -> A21R:G: adjacent_3p downward } 0 6 {A21R:G -> B8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B8R:U -> A21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A21R:G -> B9R:C: outward } 0 9 {B9R:C -> A21R:G: outward } 0 10 {A22R:G -> A23R:A: adjacent_5p upward } 0 11 {A23R:A -> A22R:G: adjacent_3p downward } 0 12 {A22R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A23R:A -> B6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 15 {B6R:C -> A23R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 16 {B6R:C -> B7R:C: adjacent_5p } 0 17 {B7R:C -> B6R:C: adjacent_3p } 0 18 {B7R:C -> B8R:U: adjacent_5p upward } 0 19 {B8R:U -> B7R:C: adjacent_3p downward } 0 20 {B8R:U -> B9R:C: adjacent_5p } 0 21 {B9R:C -> B8R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A21R:G 0 1 A22R:G 0 2 A23R:A 0 3 A24R:C 0 4 B5R:A 0 5 B6R:C 0 6 B7R:C 0 7 B8R:U 0 [Edges] 0 {A21R:G -> A22R:G: adjacent_5p upward } 0 1 {A22R:G -> A21R:G: adjacent_3p downward } 0 2 {A21R:G -> B8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B8R:U -> A21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A22R:G -> A23R:A: adjacent_5p upward } 0 5 {A23R:A -> A22R:G: adjacent_3p downward } 0 6 {A22R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A23R:A -> A24R:C: adjacent_5p upward } 0 9 {A24R:C -> A23R:A: adjacent_3p downward } 0 10 {A23R:A -> B6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 11 {B6R:C -> A23R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 12 {A24R:C -> B5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 13 {B5R:A -> A24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 14 {B5R:A -> B6R:C: adjacent_5p upward } 0 15 {B6R:C -> B5R:A: adjacent_3p downward } 0 16 {B6R:C -> B7R:C: adjacent_5p } 0 17 {B7R:C -> B6R:C: adjacent_3p } 0 18 {B7R:C -> B8R:U: adjacent_5p upward } 0 19 {B8R:U -> B7R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A22R:G 0 1 A23R:A 0 2 A24R:C 0 3 A25R:C 0 4 B4R:G 0 5 B5R:A 0 6 B6R:C 0 7 B7R:C 0 [Edges] 0 {A22R:G -> A23R:A: adjacent_5p upward } 0 1 {A23R:A -> A22R:G: adjacent_3p downward } 0 2 {A22R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A23R:A -> A24R:C: adjacent_5p upward } 0 5 {A24R:C -> A23R:A: adjacent_3p downward } 0 6 {A23R:A -> B6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 7 {B6R:C -> A23R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 8 {A24R:C -> A25R:C: adjacent_5p } 0 9 {A25R:C -> A24R:C: adjacent_3p } 0 10 {A24R:C -> B5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 11 {B5R:A -> A24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 12 {A25R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B4R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B4R:G -> B5R:A: adjacent_5p upward } 0 15 {B5R:A -> B4R:G: adjacent_3p downward } 0 16 {B5R:A -> B6R:C: adjacent_5p upward } 0 17 {B6R:C -> B5R:A: adjacent_3p downward } 0 18 {B6R:C -> B7R:C: adjacent_5p } 0 19 {B7R:C -> B6R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A23R:A 0 1 A24R:C 0 2 A25R:C 0 3 A26R:A 0 4 B3R:U 0 5 B4R:G 0 6 B5R:A 0 7 B6R:C 0 [Edges] 0 {A23R:A -> A24R:C: adjacent_5p upward } 0 1 {A24R:C -> A23R:A: adjacent_3p downward } 0 2 {A23R:A -> B6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 3 {B6R:C -> A23R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 4 {A24R:C -> A25R:C: adjacent_5p } 0 5 {A25R:C -> A24R:C: adjacent_3p } 0 6 {A24R:C -> B5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 7 {B5R:A -> A24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 8 {A25R:C -> A26R:A: adjacent_5p upward } 0 9 {A26R:A -> A25R:C: adjacent_3p downward } 0 10 {A25R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B4R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A26R:A -> B3R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B3R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A26R:A -> B4R:G: outward } 0 15 {B4R:G -> A26R:A: outward } 0 16 {B3R:U -> B4R:G: adjacent_5p upward } 0 17 {B4R:G -> B3R:U: adjacent_3p downward } 0 18 {B4R:G -> B5R:A: adjacent_5p upward } 0 19 {B5R:A -> B4R:G: adjacent_3p downward } 0 20 {B5R:A -> B6R:C: adjacent_5p upward } 0 21 {B6R:C -> B5R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A24R:C 0 1 A25R:C 0 2 A26R:A 0 3 A27R:C 0 4 B2R:G 0 5 B3R:U 0 6 B4R:G 0 7 B5R:A 0 [Edges] 0 {A24R:C -> A25R:C: adjacent_5p } 0 1 {A25R:C -> A24R:C: adjacent_3p } 0 2 {A24R:C -> B5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 3 {B5R:A -> A24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 4 {A25R:C -> A26R:A: adjacent_5p upward } 0 5 {A26R:A -> A25R:C: adjacent_3p downward } 0 6 {A25R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B4R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A26R:A -> A27R:C: adjacent_5p upward } 0 9 {A27R:C -> A26R:A: adjacent_3p downward } 0 10 {A26R:A -> B3R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B3R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A26R:A -> B4R:G: outward } 0 13 {B4R:G -> A26R:A: outward } 0 14 {A27R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B2R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B2R:G -> B3R:U: adjacent_5p upward } 0 17 {B3R:U -> B2R:G: adjacent_3p downward } 0 18 {B3R:U -> B4R:G: adjacent_5p upward } 0 19 {B4R:G -> B3R:U: adjacent_3p downward } 0 20 {B4R:G -> B5R:A: adjacent_5p upward } 0 21 {B5R:A -> B4R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 B268R:G 0 1 B269R:A 0 2 B270R:C 0 3 B271R:C 0 4 B305R:G 0 5 B306R:G 0 6 B307R:U 0 7 B308R:C 0 [Edges] 0 {B268R:G -> B269R:A: adjacent_5p upward } 0 1 {B269R:A -> B268R:G: adjacent_3p downward } 0 2 {B268R:G -> B308R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B308R:C -> B268R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B269R:A -> B270R:C: adjacent_5p upward } 0 5 {B270R:C -> B269R:A: adjacent_3p downward } 0 6 {B269R:A -> B307R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B307R:U -> B269R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B270R:C -> B271R:C: adjacent_5p upward } 0 9 {B271R:C -> B270R:C: adjacent_3p downward } 0 10 {B270R:C -> B306R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B306R:G -> B270R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B271R:C -> B305R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B305R:G -> B271R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B305R:G -> B306R:G: adjacent_5p upward } 0 15 {B306R:G -> B305R:G: adjacent_3p downward } 0 16 {B306R:G -> B307R:U: adjacent_5p upward } 0 17 {B307R:U -> B306R:G: adjacent_3p downward } 0 18 {B307R:U -> B308R:C: adjacent_5p upward } 0 19 {B308R:C -> B307R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B269R:A 0 1 B270R:C 0 2 B271R:C 0 3 B272R:G 0 4 B304R:A 0 5 B305R:G 0 6 B306R:G 0 7 B307R:U 0 [Edges] 0 {B269R:A -> B270R:C: adjacent_5p upward } 0 1 {B270R:C -> B269R:A: adjacent_3p downward } 0 2 {B269R:A -> B307R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B307R:U -> B269R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B270R:C -> B271R:C: adjacent_5p upward } 0 5 {B271R:C -> B270R:C: adjacent_3p downward } 0 6 {B270R:C -> B306R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B306R:G -> B270R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B271R:C -> B272R:G: adjacent_5p upward } 0 9 {B272R:G -> B271R:C: adjacent_3p downward } 0 10 {B271R:C -> B305R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B305R:G -> B271R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B272R:G -> B304R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {B304R:A -> B272R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {B304R:A -> B305R:G: adjacent_5p upward } 0 15 {B305R:G -> B304R:A: adjacent_3p downward } 0 16 {B305R:G -> B306R:G: adjacent_5p upward } 0 17 {B306R:G -> B305R:G: adjacent_3p downward } 0 18 {B306R:G -> B307R:U: adjacent_5p upward } 0 19 {B307R:U -> B306R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B270R:C 0 1 B271R:C 0 2 B272R:G 0 3 B273R:A 0 4 B303R:U 0 5 B304R:A 0 6 B305R:G 0 7 B306R:G 0 [Edges] 0 {B270R:C -> B271R:C: adjacent_5p upward } 0 1 {B271R:C -> B270R:C: adjacent_3p downward } 0 2 {B270R:C -> B306R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B306R:G -> B270R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B271R:C -> B272R:G: adjacent_5p upward } 0 5 {B272R:G -> B271R:C: adjacent_3p downward } 0 6 {B271R:C -> B305R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B305R:G -> B271R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B272R:G -> B273R:A: adjacent_5p } 0 9 {B273R:A -> B272R:G: adjacent_3p } 0 10 {B272R:G -> B304R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {B304R:A -> B272R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {B273R:A -> B303R:U: pairing antiparallel trans XXIV Hh/Ws } 0 13 {B303R:U -> B273R:A: pairing antiparallel trans XXIV Ws/Hh } 0 14 {B273R:A -> B304R:A: outward } 0 15 {B304R:A -> B273R:A: outward } 0 16 {B303R:U -> B304R:A: adjacent_5p upward } 0 17 {B304R:A -> B303R:U: adjacent_3p downward } 0 18 {B304R:A -> B305R:G: adjacent_5p upward } 0 19 {B305R:G -> B304R:A: adjacent_3p downward } 0 20 {B305R:G -> B306R:G: adjacent_5p upward } 0 21 {B306R:G -> B305R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B271R:C 0 1 B272R:G 0 2 B273R:A 0 3 B274R:U 0 4 B302R:G 0 5 B303R:U 0 6 B304R:A 0 7 B305R:G 0 [Edges] 0 {B271R:C -> B272R:G: adjacent_5p upward } 0 1 {B272R:G -> B271R:C: adjacent_3p downward } 0 2 {B271R:C -> B305R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B305R:G -> B271R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B272R:G -> B273R:A: adjacent_5p } 0 5 {B273R:A -> B272R:G: adjacent_3p } 0 6 {B272R:G -> B304R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {B304R:A -> B272R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {B273R:A -> B274R:U: adjacent_5p upward } 0 9 {B274R:U -> B273R:A: adjacent_3p downward } 0 10 {B273R:A -> B303R:U: pairing antiparallel trans XXIV Hh/Ws } 0 11 {B303R:U -> B273R:A: pairing antiparallel trans XXIV Ws/Hh } 0 12 {B273R:A -> B304R:A: outward } 0 13 {B304R:A -> B273R:A: outward } 0 14 {B274R:U -> B302R:G: pairing antiparallel trans one_hbond 91 Hw/Ww } 0 15 {B302R:G -> B274R:U: pairing antiparallel trans one_hbond 91 Ww/Hw } 0 16 {B302R:G -> B303R:U: adjacent_5p upward } 0 17 {B303R:U -> B302R:G: adjacent_3p downward } 0 18 {B303R:U -> B304R:A: adjacent_5p upward } 0 19 {B304R:A -> B303R:U: adjacent_3p downward } 0 20 {B304R:A -> B305R:G: adjacent_5p upward } 0 21 {B305R:G -> B304R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B273R:A 0 1 B274R:U 0 2 B275R:G 0 3 B276R:G 0 4 B300R:G 0 5 B301R:A 0 6 B302R:G 0 7 B303R:U 0 [Edges] 0 {B273R:A -> B274R:U: adjacent_5p upward } 0 1 {B274R:U -> B273R:A: adjacent_3p downward } 0 2 {B273R:A -> B303R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {B303R:U -> B273R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {B274R:U -> B275R:G: adjacent_5p upward } 0 5 {B275R:G -> B274R:U: adjacent_3p downward } 0 6 {B274R:U -> B302R:G: pairing antiparallel trans one_hbond 91 Hw/Ww } 0 7 {B302R:G -> B274R:U: pairing antiparallel trans one_hbond 91 Ww/Hw } 0 8 {B275R:G -> B276R:G: adjacent_5p upward } 0 9 {B276R:G -> B275R:G: adjacent_3p downward } 0 10 {B276R:G -> B300R:G: pairing antiparallel trans 115 Ww/Bh } 0 11 {B300R:G -> B276R:G: pairing antiparallel trans 115 Bh/Ww } 0 12 {B300R:G -> B301R:A: adjacent_5p upward } 0 13 {B301R:A -> B300R:G: adjacent_3p downward } 0 14 {B301R:A -> B302R:G: adjacent_5p upward } 0 15 {B302R:G -> B301R:A: adjacent_3p downward } 0 16 {B302R:G -> B303R:U: adjacent_5p upward } 0 17 {B303R:U -> B302R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 B274R:U 0 1 B275R:G 0 2 B276R:G 0 3 B277R:U 0 4 B299R:A 0 5 B300R:G 0 6 B301R:A 0 7 B302R:G 0 [Edges] 0 {B274R:U -> B275R:G: adjacent_5p upward } 0 1 {B275R:G -> B274R:U: adjacent_3p downward } 0 2 {B274R:U -> B302R:G: pairing antiparallel trans one_hbond 91 Hw/Ww } 0 3 {B302R:G -> B274R:U: pairing antiparallel trans one_hbond 91 Ww/Hw } 0 4 {B275R:G -> B276R:G: adjacent_5p upward } 0 5 {B276R:G -> B275R:G: adjacent_3p downward } 0 6 {B276R:G -> B277R:U: adjacent_5p upward } 0 7 {B277R:U -> B276R:G: adjacent_3p downward } 0 8 {B276R:G -> B300R:G: pairing antiparallel trans 115 Ww/Bh } 0 9 {B300R:G -> B276R:G: pairing antiparallel trans 115 Bh/Ww } 0 10 {B277R:U -> B299R:A: pairing antiparallel trans XXIV Ws/Hh } 0 11 {B299R:A -> B277R:U: pairing antiparallel trans XXIV Hh/Ws } 0 12 {B299R:A -> B300R:G: adjacent_5p upward } 0 13 {B300R:G -> B299R:A: adjacent_3p downward } 0 14 {B300R:G -> B301R:A: adjacent_5p upward } 0 15 {B301R:A -> B300R:G: adjacent_3p downward } 0 16 {B301R:A -> B302R:G: adjacent_5p upward } 0 17 {B302R:G -> B301R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 B276R:G 0 1 B277R:U 0 2 B278R:A 0 3 B279R:G 0 4 B297R:C 0 5 B298R:G 0 6 B299R:A 0 7 B300R:G 0 [Edges] 0 {B276R:G -> B277R:U: adjacent_5p upward } 0 1 {B277R:U -> B276R:G: adjacent_3p downward } 0 2 {B276R:G -> B300R:G: pairing antiparallel trans 115 Ww/Bh } 0 3 {B300R:G -> B276R:G: pairing antiparallel trans 115 Bh/Ww } 0 4 {B277R:U -> B278R:A: adjacent_5p upward } 0 5 {B278R:A -> B277R:U: adjacent_3p downward } 0 6 {B277R:U -> B299R:A: pairing antiparallel trans XXIV Ws/Hh } 0 7 {B299R:A -> B277R:U: pairing antiparallel trans XXIV Hh/Ws } 0 8 {B278R:A -> B279R:G: adjacent_5p upward } 0 9 {B279R:G -> B278R:A: adjacent_3p downward } 0 10 {B278R:A -> B298R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {B298R:G -> B278R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {B278R:A -> B299R:A: outward } 0 13 {B299R:A -> B278R:A: outward } 0 14 {B279R:G -> B297R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B297R:C -> B279R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B297R:C -> B298R:G: adjacent_5p } 0 17 {B298R:G -> B297R:C: adjacent_3p } 0 18 {B298R:G -> B299R:A: adjacent_5p } 0 19 {B299R:A -> B298R:G: adjacent_3p } 0 20 {B299R:A -> B300R:G: adjacent_5p upward } 0 21 {B300R:G -> B299R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B277R:U 0 1 B278R:A 0 2 B279R:G 0 3 B280R:U 0 4 B296R:G 0 5 B297R:C 0 6 B298R:G 0 7 B299R:A 0 [Edges] 0 {B277R:U -> B278R:A: adjacent_5p upward } 0 1 {B278R:A -> B277R:U: adjacent_3p downward } 0 2 {B277R:U -> B299R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {B299R:A -> B277R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {B278R:A -> B279R:G: adjacent_5p upward } 0 5 {B279R:G -> B278R:A: adjacent_3p downward } 0 6 {B278R:A -> B298R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {B298R:G -> B278R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {B278R:A -> B299R:A: outward } 0 9 {B299R:A -> B278R:A: outward } 0 10 {B279R:G -> B280R:U: adjacent_5p upward } 0 11 {B280R:U -> B279R:G: adjacent_3p downward } 0 12 {B279R:G -> B297R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B297R:C -> B279R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B280R:U -> B296R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {B296R:G -> B280R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {B296R:G -> B297R:C: adjacent_5p upward } 0 17 {B297R:C -> B296R:G: adjacent_3p downward } 0 18 {B297R:C -> B298R:G: adjacent_5p } 0 19 {B298R:G -> B297R:C: adjacent_3p } 0 20 {B298R:G -> B299R:A: adjacent_5p } 0 21 {B299R:A -> B298R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B278R:A 0 1 B279R:G 0 2 B280R:U 0 3 B281R:G 0 4 B295R:U 0 5 B296R:G 0 6 B297R:C 0 7 B298R:G 0 [Edges] 0 {B278R:A -> B279R:G: adjacent_5p upward } 0 1 {B279R:G -> B278R:A: adjacent_3p downward } 0 2 {B278R:A -> B298R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {B298R:G -> B278R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {B279R:G -> B280R:U: adjacent_5p upward } 0 5 {B280R:U -> B279R:G: adjacent_3p downward } 0 6 {B279R:G -> B297R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B297R:C -> B279R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B280R:U -> B281R:G: adjacent_5p } 0 9 {B281R:G -> B280R:U: adjacent_3p } 0 10 {B280R:U -> B296R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B296R:G -> B280R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {B281R:G -> B295R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B295R:U -> B281R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {B281R:G -> B296R:G: outward } 0 15 {B296R:G -> B281R:G: outward } 0 16 {B295R:U -> B296R:G: adjacent_5p } 0 17 {B296R:G -> B295R:U: adjacent_3p } 0 18 {B296R:G -> B297R:C: adjacent_5p upward } 0 19 {B297R:C -> B296R:G: adjacent_3p downward } 0 20 {B297R:C -> B298R:G: adjacent_5p } 0 21 {B298R:G -> B297R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B279R:G 0 1 B280R:U 0 2 B281R:G 0 3 B282R:U 0 4 B294R:A 0 5 B295R:U 0 6 B296R:G 0 7 B297R:C 0 [Edges] 0 {B279R:G -> B280R:U: adjacent_5p upward } 0 1 {B280R:U -> B279R:G: adjacent_3p downward } 0 2 {B279R:G -> B297R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B297R:C -> B279R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B280R:U -> B281R:G: adjacent_5p } 0 5 {B281R:G -> B280R:U: adjacent_3p } 0 6 {B280R:U -> B296R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B296R:G -> B280R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {B281R:G -> B282R:U: adjacent_5p upward } 0 9 {B282R:U -> B281R:G: adjacent_3p downward } 0 10 {B281R:G -> B295R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B295R:U -> B281R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {B281R:G -> B296R:G: outward } 0 13 {B296R:G -> B281R:G: outward } 0 14 {B282R:U -> B294R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B294R:A -> B282R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B294R:A -> B295R:U: adjacent_5p upward } 0 17 {B295R:U -> B294R:A: adjacent_3p downward } 0 18 {B295R:U -> B296R:G: adjacent_5p } 0 19 {B296R:G -> B295R:U: adjacent_3p } 0 20 {B296R:G -> B297R:C: adjacent_5p upward } 0 21 {B297R:C -> B296R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B280R:U 0 1 B281R:G 0 2 B282R:U 0 3 B283R:C 0 4 B293R:G 0 5 B294R:A 0 6 B295R:U 0 7 B296R:G 0 [Edges] 0 {B280R:U -> B281R:G: adjacent_5p } 0 1 {B281R:G -> B280R:U: adjacent_3p } 0 2 {B280R:U -> B296R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B296R:G -> B280R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {B281R:G -> B282R:U: adjacent_5p upward } 0 5 {B282R:U -> B281R:G: adjacent_3p downward } 0 6 {B281R:G -> B295R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B295R:U -> B281R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B281R:G -> B296R:G: outward } 0 9 {B296R:G -> B281R:G: outward } 0 10 {B282R:U -> B283R:C: adjacent_5p upward } 0 11 {B283R:C -> B282R:U: adjacent_3p downward } 0 12 {B282R:U -> B294R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B294R:A -> B282R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B283R:C -> B293R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B293R:G -> B283R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B293R:G -> B294R:A: adjacent_5p upward } 0 17 {B294R:A -> B293R:G: adjacent_3p downward } 0 18 {B294R:A -> B295R:U: adjacent_5p upward } 0 19 {B295R:U -> B294R:A: adjacent_3p downward } 0 20 {B295R:U -> B296R:G: adjacent_5p } 0 21 {B296R:G -> B295R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B281R:G 0 1 B282R:U 0 2 B283R:C 0 3 B284R:U 0 4 B292R:G 0 5 B293R:G 0 6 B294R:A 0 7 B295R:U 0 [Edges] 0 {B281R:G -> B282R:U: adjacent_5p upward } 0 1 {B282R:U -> B281R:G: adjacent_3p downward } 0 2 {B281R:G -> B295R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B295R:U -> B281R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B282R:U -> B283R:C: adjacent_5p upward } 0 5 {B283R:C -> B282R:U: adjacent_3p downward } 0 6 {B282R:U -> B294R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B294R:A -> B282R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B283R:C -> B284R:U: adjacent_5p upward } 0 9 {B284R:U -> B283R:C: adjacent_3p downward } 0 10 {B283R:C -> B293R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B293R:G -> B283R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B284R:U -> B292R:G: pairing parallel trans one_hbond Ss/Ws } 0 13 {B292R:G -> B284R:U: pairing parallel trans one_hbond Ws/Ss } 0 14 {B292R:G -> B293R:G: adjacent_5p } 0 15 {B293R:G -> B292R:G: adjacent_3p } 0 16 {B293R:G -> B294R:A: adjacent_5p upward } 0 17 {B294R:A -> B293R:G: adjacent_3p downward } 0 18 {B294R:A -> B295R:U: adjacent_5p upward } 0 19 {B295R:U -> B294R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 M92R:C 0 1 M93R:C 0 2 M94R:A 0 3 M95R:U 0 4 N81R:G 0 5 N82R:U 0 6 N83R:G 0 7 N84R:G 0 [Edges] 0 {M92R:C -> M93R:C: adjacent_5p } 0 1 {M93R:C -> M92R:C: adjacent_3p } 0 2 {M92R:C -> N84R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {N84R:G -> M92R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {M93R:C -> M94R:A: adjacent_5p upward } 0 5 {M94R:A -> M93R:C: adjacent_3p downward } 0 6 {M93R:C -> N83R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {N83R:G -> M93R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {M94R:A -> M95R:U: adjacent_5p upward } 0 9 {M95R:U -> M94R:A: adjacent_3p downward } 0 10 {M94R:A -> N82R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {N82R:U -> M94R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {M94R:A -> N83R:G: outward } 0 13 {N83R:G -> M94R:A: outward } 0 14 {M95R:U -> N81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {N81R:G -> M95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {N81R:G -> N82R:U: adjacent_5p upward } 0 17 {N82R:U -> N81R:G: adjacent_3p downward } 0 18 {N82R:U -> N83R:G: adjacent_5p upward } 0 19 {N83R:G -> N82R:U: adjacent_3p downward } 0 20 {N83R:G -> N84R:G: adjacent_5p upward } 0 21 {N84R:G -> N83R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 M93R:C 0 1 M94R:A 0 2 M95R:U 0 3 M96R:G 0 4 N80R:U 0 5 N81R:G 0 6 N82R:U 0 7 N83R:G 0 [Edges] 0 {M93R:C -> M94R:A: adjacent_5p upward } 0 1 {M94R:A -> M93R:C: adjacent_3p downward } 0 2 {M93R:C -> N83R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {N83R:G -> M93R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {M94R:A -> M95R:U: adjacent_5p upward } 0 5 {M95R:U -> M94R:A: adjacent_3p downward } 0 6 {M94R:A -> N82R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {N82R:U -> M94R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {M94R:A -> N83R:G: outward } 0 9 {N83R:G -> M94R:A: outward } 0 10 {M95R:U -> M96R:G: adjacent_5p } 0 11 {M96R:G -> M95R:U: adjacent_3p } 0 12 {M95R:U -> N81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {N81R:G -> M95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {M96R:G -> N80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {N80R:U -> M96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {M96R:G -> N81R:G: outward } 0 17 {N81R:G -> M96R:G: outward } 0 18 {N80R:U -> N81R:G: adjacent_5p } 0 19 {N81R:G -> N80R:U: adjacent_3p } 0 20 {N81R:G -> N82R:U: adjacent_5p upward } 0 21 {N82R:U -> N81R:G: adjacent_3p downward } 0 22 {N82R:U -> N83R:G: adjacent_5p upward } 0 23 {N83R:G -> N82R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 M94R:A 0 1 M95R:U 0 2 M96R:G 0 3 M97R:C 0 4 N79R:G 0 5 N80R:U 0 6 N81R:G 0 7 N82R:U 0 [Edges] 0 {M94R:A -> M95R:U: adjacent_5p upward } 0 1 {M95R:U -> M94R:A: adjacent_3p downward } 0 2 {M94R:A -> N82R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {N82R:U -> M94R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {M95R:U -> M96R:G: adjacent_5p } 0 5 {M96R:G -> M95R:U: adjacent_3p } 0 6 {M95R:U -> N81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {N81R:G -> M95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {M96R:G -> M97R:C: adjacent_5p upward } 0 9 {M97R:C -> M96R:G: adjacent_3p downward } 0 10 {M96R:G -> N80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {N80R:U -> M96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {M96R:G -> N81R:G: outward } 0 13 {N81R:G -> M96R:G: outward } 0 14 {M97R:C -> N79R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {N79R:G -> M97R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {N79R:G -> N80R:U: adjacent_5p upward } 0 17 {N80R:U -> N79R:G: adjacent_3p downward } 0 18 {N80R:U -> N81R:G: adjacent_5p } 0 19 {N81R:G -> N80R:U: adjacent_3p } 0 20 {N81R:G -> N82R:U: adjacent_5p upward } 0 21 {N82R:U -> N81R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 M95R:U 0 1 M96R:G 0 2 M97R:C 0 3 M98R:G 0 4 N78R:A 0 5 N79R:G 0 6 N80R:U 0 7 N81R:G 0 [Edges] 0 {M95R:U -> M96R:G: adjacent_5p } 0 1 {M96R:G -> M95R:U: adjacent_3p } 0 2 {M95R:U -> N81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {N81R:G -> M95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {M96R:G -> M97R:C: adjacent_5p upward } 0 5 {M97R:C -> M96R:G: adjacent_3p downward } 0 6 {M96R:G -> N80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {N80R:U -> M96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {M96R:G -> N81R:G: outward } 0 9 {N81R:G -> M96R:G: outward } 0 10 {M97R:C -> M98R:G: adjacent_5p upward } 0 11 {M98R:G -> M97R:C: adjacent_3p downward } 0 12 {M97R:C -> N79R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {N79R:G -> M97R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {M98R:G -> N78R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {N78R:A -> M98R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {N78R:A -> N79R:G: adjacent_5p upward } 0 17 {N79R:G -> N78R:A: adjacent_3p downward } 0 18 {N79R:G -> N80R:U: adjacent_5p upward } 0 19 {N80R:U -> N79R:G: adjacent_3p downward } 0 20 {N80R:U -> N81R:G: adjacent_5p } 0 21 {N81R:G -> N80R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 M96R:G 0 1 M97R:C 0 2 M98R:G 0 3 M99R:A 0 4 N77R:U 0 5 N78R:A 0 6 N79R:G 0 7 N80R:U 0 [Edges] 0 {M96R:G -> M97R:C: adjacent_5p upward } 0 1 {M97R:C -> M96R:G: adjacent_3p downward } 0 2 {M96R:G -> N80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {N80R:U -> M96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {M97R:C -> M98R:G: adjacent_5p upward } 0 5 {M98R:G -> M97R:C: adjacent_3p downward } 0 6 {M97R:C -> N79R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {N79R:G -> M97R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {M98R:G -> M99R:A: adjacent_5p } 0 9 {M99R:A -> M98R:G: adjacent_3p } 0 10 {M98R:G -> N78R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {N78R:A -> M98R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {M99R:A -> N77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 13 {N77R:U -> M99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 14 {M99R:A -> N78R:A: outward } 0 15 {N78R:A -> M99R:A: outward } 0 16 {N77R:U -> N78R:A: adjacent_5p } 0 17 {N78R:A -> N77R:U: adjacent_3p } 0 18 {N78R:A -> N79R:G: adjacent_5p upward } 0 19 {N79R:G -> N78R:A: adjacent_3p downward } 0 20 {N79R:G -> N80R:U: adjacent_5p upward } 0 21 {N80R:U -> N79R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 M97R:C 0 1 M98R:G 0 2 M99R:A 0 3 M100R:G 0 4 N76R:G 0 5 N77R:U 0 6 N78R:A 0 7 N79R:G 0 [Edges] 0 {M97R:C -> M98R:G: adjacent_5p upward } 0 1 {M98R:G -> M97R:C: adjacent_3p downward } 0 2 {M97R:C -> N79R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {N79R:G -> M97R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {M98R:G -> M99R:A: adjacent_5p } 0 5 {M99R:A -> M98R:G: adjacent_3p } 0 6 {M98R:G -> N78R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {N78R:A -> M98R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {M99R:A -> M100R:G: adjacent_5p upward } 0 9 {M100R:G -> M99R:A: adjacent_3p downward } 0 10 {M99R:A -> N77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 11 {N77R:U -> M99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 12 {M99R:A -> N78R:A: outward } 0 13 {N78R:A -> M99R:A: outward } 0 14 {M100R:G -> N76R:G: pairing antiparallel trans 115 Bh/Ww } 0 15 {N76R:G -> M100R:G: pairing antiparallel trans 115 Ww/Bh } 0 16 {N76R:G -> N77R:U: adjacent_5p upward } 0 17 {N77R:U -> N76R:G: adjacent_3p downward } 0 18 {N77R:U -> N78R:A: adjacent_5p } 0 19 {N78R:A -> N77R:U: adjacent_3p } 0 20 {N78R:A -> N79R:G: adjacent_5p upward } 0 21 {N79R:G -> N78R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 M98R:G 0 1 M99R:A 0 2 M100R:G 0 3 M101R:A 0 4 N75R:G 0 5 N76R:G 0 6 N77R:U 0 7 N78R:A 0 [Edges] 0 {M98R:G -> M99R:A: adjacent_5p } 0 1 {M99R:A -> M98R:G: adjacent_3p } 0 2 {M98R:G -> N78R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {N78R:A -> M98R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {M99R:A -> M100R:G: adjacent_5p upward } 0 5 {M100R:G -> M99R:A: adjacent_3p downward } 0 6 {M99R:A -> N77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 7 {N77R:U -> M99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 8 {M99R:A -> N78R:A: outward } 0 9 {N78R:A -> M99R:A: outward } 0 10 {M100R:G -> M101R:A: adjacent_5p upward } 0 11 {M101R:A -> M100R:G: adjacent_3p downward } 0 12 {M100R:G -> N76R:G: pairing antiparallel trans 115 Bh/Ww } 0 13 {N76R:G -> M100R:G: pairing antiparallel trans 115 Ww/Bh } 0 14 {M101R:A -> N75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 15 {N75R:G -> M101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 16 {N75R:G -> N76R:G: adjacent_5p upward } 0 17 {N76R:G -> N75R:G: adjacent_3p downward } 0 18 {N76R:G -> N77R:U: adjacent_5p upward } 0 19 {N77R:U -> N76R:G: adjacent_3p downward } 0 20 {N77R:U -> N78R:A: adjacent_5p } 0 21 {N78R:A -> N77R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 M99R:A 0 1 M100R:G 0 2 M101R:A 0 3 M102R:G 0 4 N74R:U 0 5 N75R:G 0 6 N76R:G 0 7 N77R:U 0 [Edges] 0 {M99R:A -> M100R:G: adjacent_5p upward } 0 1 {M100R:G -> M99R:A: adjacent_3p downward } 0 2 {M99R:A -> N77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {N77R:U -> M99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {M100R:G -> M101R:A: adjacent_5p upward } 0 5 {M101R:A -> M100R:G: adjacent_3p downward } 0 6 {M100R:G -> N76R:G: pairing antiparallel trans 115 Bh/Ww } 0 7 {N76R:G -> M100R:G: pairing antiparallel trans 115 Ww/Bh } 0 8 {M101R:A -> M102R:G: adjacent_5p upward } 0 9 {M102R:G -> M101R:A: adjacent_3p downward } 0 10 {M101R:A -> N75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {N75R:G -> M101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {M102R:G -> N74R:U: pairing antiparallel trans 91 Ww/Bh } 0 13 {N74R:U -> M102R:G: pairing antiparallel trans 91 Bh/Ww } 0 14 {N74R:U -> N75R:G: adjacent_5p upward } 0 15 {N75R:G -> N74R:U: adjacent_3p downward } 0 16 {N75R:G -> N76R:G: adjacent_5p upward } 0 17 {N76R:G -> N75R:G: adjacent_3p downward } 0 18 {N76R:G -> N77R:U: adjacent_5p upward } 0 19 {N77R:U -> N76R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 M100R:G 0 1 M101R:A 0 2 M102R:G 0 3 M103R:U 0 4 N73R:A 0 5 N74R:U 0 6 N75R:G 0 7 N76R:G 0 [Edges] 0 {M100R:G -> M101R:A: adjacent_5p upward } 0 1 {M101R:A -> M100R:G: adjacent_3p downward } 0 2 {M100R:G -> N76R:G: pairing antiparallel trans 115 Bh/Ww } 0 3 {N76R:G -> M100R:G: pairing antiparallel trans 115 Ww/Bh } 0 4 {M101R:A -> M102R:G: adjacent_5p upward } 0 5 {M102R:G -> M101R:A: adjacent_3p downward } 0 6 {M101R:A -> N75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {N75R:G -> M101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {M102R:G -> M103R:U: adjacent_5p upward } 0 9 {M103R:U -> M102R:G: adjacent_3p downward } 0 10 {M102R:G -> N74R:U: pairing antiparallel trans 91 Ww/Bh } 0 11 {N74R:U -> M102R:G: pairing antiparallel trans 91 Bh/Ww } 0 12 {M103R:U -> N73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 13 {N73R:A -> M103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 14 {N73R:A -> N74R:U: adjacent_5p upward } 0 15 {N74R:U -> N73R:A: adjacent_3p downward } 0 16 {N74R:U -> N75R:G: adjacent_5p upward } 0 17 {N75R:G -> N74R:U: adjacent_3p downward } 0 18 {N75R:G -> N76R:G: adjacent_5p upward } 0 19 {N76R:G -> N75R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 M101R:A 0 1 M102R:G 0 2 M103R:U 0 3 M104R:A 0 4 N72R:G 0 5 N73R:A 0 6 N74R:U 0 7 N75R:G 0 [Edges] 0 {M101R:A -> M102R:G: adjacent_5p upward } 0 1 {M102R:G -> M101R:A: adjacent_3p downward } 0 2 {M101R:A -> N75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {N75R:G -> M101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {M102R:G -> M103R:U: adjacent_5p upward } 0 5 {M103R:U -> M102R:G: adjacent_3p downward } 0 6 {M102R:G -> N74R:U: pairing antiparallel trans 91 Ww/Bh } 0 7 {N74R:U -> M102R:G: pairing antiparallel trans 91 Bh/Ww } 0 8 {M103R:U -> M104R:A: adjacent_5p upward } 0 9 {M104R:A -> M103R:U: adjacent_3p downward } 0 10 {M103R:U -> N73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 11 {N73R:A -> M103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 12 {M104R:A -> N72R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {N72R:G -> M104R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {M104R:A -> N73R:A: outward } 0 15 {N73R:A -> M104R:A: outward } 0 16 {N72R:G -> N73R:A: adjacent_5p } 0 17 {N73R:A -> N72R:G: adjacent_3p } 0 18 {N73R:A -> N74R:U: adjacent_5p upward } 0 19 {N74R:U -> N73R:A: adjacent_3p downward } 0 20 {N74R:U -> N75R:G: adjacent_5p upward } 0 21 {N75R:G -> N74R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 M102R:G 0 1 M103R:U 0 2 M104R:A 0 3 M105R:G 0 4 N71R:C 0 5 N72R:G 0 6 N73R:A 0 7 N74R:U 0 [Edges] 0 {M102R:G -> M103R:U: adjacent_5p upward } 0 1 {M103R:U -> M102R:G: adjacent_3p downward } 0 2 {M102R:G -> N74R:U: pairing antiparallel trans 91 Ww/Bh } 0 3 {N74R:U -> M102R:G: pairing antiparallel trans 91 Bh/Ww } 0 4 {M103R:U -> M104R:A: adjacent_5p upward } 0 5 {M104R:A -> M103R:U: adjacent_3p downward } 0 6 {M103R:U -> N73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 7 {N73R:A -> M103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 8 {M104R:A -> M105R:G: adjacent_5p upward } 0 9 {M105R:G -> M104R:A: adjacent_3p downward } 0 10 {M104R:A -> N72R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {N72R:G -> M104R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {M104R:A -> N73R:A: outward } 0 13 {N73R:A -> M104R:A: outward } 0 14 {M105R:G -> N71R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {N71R:C -> M105R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {N71R:C -> N72R:G: adjacent_5p upward } 0 17 {N72R:G -> N71R:C: adjacent_3p downward } 0 18 {N72R:G -> N73R:A: adjacent_5p } 0 19 {N73R:A -> N72R:G: adjacent_3p } 0 20 {N73R:A -> N74R:U: adjacent_5p upward } 0 21 {N74R:U -> N73R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 M103R:U 0 1 M104R:A 0 2 M105R:G 0 3 M106R:G 0 4 N70R:C 0 5 N71R:C 0 6 N72R:G 0 7 N73R:A 0 [Edges] 0 {M103R:U -> M104R:A: adjacent_5p upward } 0 1 {M104R:A -> M103R:U: adjacent_3p downward } 0 2 {M103R:U -> N73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {N73R:A -> M103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {M104R:A -> M105R:G: adjacent_5p upward } 0 5 {M105R:G -> M104R:A: adjacent_3p downward } 0 6 {M104R:A -> N72R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {N72R:G -> M104R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {M104R:A -> N73R:A: outward } 0 9 {N73R:A -> M104R:A: outward } 0 10 {M105R:G -> M106R:G: adjacent_5p upward } 0 11 {M106R:G -> M105R:G: adjacent_3p downward } 0 12 {M105R:G -> N71R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {N71R:C -> M105R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {M106R:G -> N70R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {N70R:C -> M106R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {N70R:C -> N71R:C: adjacent_5p } 0 17 {N71R:C -> N70R:C: adjacent_3p } 0 18 {N71R:C -> N72R:G: adjacent_5p upward } 0 19 {N72R:G -> N71R:C: adjacent_3p downward } 0 20 {N72R:G -> N73R:A: adjacent_5p } 0 21 {N73R:A -> N72R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:C 0 2 A6R:C 0 3 A7R:C 0 4 B12R:G 0 5 B13R:G 0 6 B14R:G 0 7 B15R:U 0 [Edges] 0 {A4R:A -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> B15R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B15R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:C -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B14R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:C -> A7R:C: adjacent_5p upward } 0 9 {A7R:C -> A6R:C: adjacent_3p downward } 0 10 {A6R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B13R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B12R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B12R:G -> B13R:G: adjacent_5p upward } 0 15 {B13R:G -> B12R:G: adjacent_3p downward } 0 16 {B13R:G -> B14R:G: adjacent_5p upward } 0 17 {B14R:G -> B13R:G: adjacent_3p downward } 0 18 {B14R:G -> B15R:U: adjacent_5p upward } 0 19 {B15R:U -> B14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:C 0 2 A7R:C 0 3 A8R:U 0 4 B11R:A 0 5 B12R:G 0 6 B13R:G 0 7 B14R:G 0 [Edges] 0 {A5R:C -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:C: adjacent_3p downward } 0 2 {A5R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B14R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:C -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:C: adjacent_3p downward } 0 6 {A6R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B13R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:C -> A8R:U: adjacent_5p upward } 0 9 {A8R:U -> A7R:C: adjacent_3p downward } 0 10 {A7R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B12R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B11R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B11R:A -> B12R:G: adjacent_5p upward } 0 15 {B12R:G -> B11R:A: adjacent_3p downward } 0 16 {B12R:G -> B13R:G: adjacent_5p upward } 0 17 {B13R:G -> B12R:G: adjacent_3p downward } 0 18 {B13R:G -> B14R:G: adjacent_5p upward } 0 19 {B14R:G -> B13R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B131R:G 0 1 B132R:C 0 2 B133R:U 0 3 B134R:C 0 4 B174R:G 0 5 B175R:A 0 6 B176R:G 0 7 B177R:C 0 [Edges] 0 {B131R:G -> B132R:C: adjacent_5p upward } 0 1 {B132R:C -> B131R:G: adjacent_3p downward } 0 2 {B131R:G -> B177R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B177R:C -> B131R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B132R:C -> B133R:U: adjacent_5p upward } 0 5 {B133R:U -> B132R:C: adjacent_3p downward } 0 6 {B132R:C -> B176R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B176R:G -> B132R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B133R:U -> B134R:C: adjacent_5p upward } 0 9 {B134R:C -> B133R:U: adjacent_3p downward } 0 10 {B133R:U -> B175R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B175R:A -> B133R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B134R:C -> B174R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B174R:G -> B134R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B174R:G -> B175R:A: adjacent_5p upward } 0 15 {B175R:A -> B174R:G: adjacent_3p downward } 0 16 {B175R:A -> B176R:G: adjacent_5p upward } 0 17 {B176R:G -> B175R:A: adjacent_3p downward } 0 18 {B176R:G -> B177R:C: adjacent_5p upward } 0 19 {B177R:C -> B176R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B132R:C 0 1 B133R:U 0 2 B134R:C 0 3 B135R:U 0 4 B173R:A 0 5 B174R:G 0 6 B175R:A 0 7 B176R:G 0 [Edges] 0 {B132R:C -> B133R:U: adjacent_5p upward } 0 1 {B133R:U -> B132R:C: adjacent_3p downward } 0 2 {B132R:C -> B176R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B176R:G -> B132R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B133R:U -> B134R:C: adjacent_5p upward } 0 5 {B134R:C -> B133R:U: adjacent_3p downward } 0 6 {B133R:U -> B175R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B175R:A -> B133R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B134R:C -> B135R:U: adjacent_5p upward } 0 9 {B135R:U -> B134R:C: adjacent_3p downward } 0 10 {B134R:C -> B174R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B174R:G -> B134R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B135R:U -> B173R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B173R:A -> B135R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B173R:A -> B174R:G: adjacent_5p upward } 0 15 {B174R:G -> B173R:A: adjacent_3p downward } 0 16 {B174R:G -> B175R:A: adjacent_5p upward } 0 17 {B175R:A -> B174R:G: adjacent_3p downward } 0 18 {B175R:A -> B176R:G: adjacent_5p upward } 0 19 {B176R:G -> B175R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B133R:U 0 1 B134R:C 0 2 B135R:U 0 3 B136R:G 0 4 B172R:C 0 5 B173R:A 0 6 B174R:G 0 7 B175R:A 0 [Edges] 0 {B133R:U -> B134R:C: adjacent_5p upward } 0 1 {B134R:C -> B133R:U: adjacent_3p downward } 0 2 {B133R:U -> B175R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B175R:A -> B133R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B134R:C -> B135R:U: adjacent_5p upward } 0 5 {B135R:U -> B134R:C: adjacent_3p downward } 0 6 {B134R:C -> B174R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B174R:G -> B134R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B135R:U -> B136R:G: adjacent_5p } 0 9 {B136R:G -> B135R:U: adjacent_3p } 0 10 {B135R:U -> B173R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B173R:A -> B135R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B136R:G -> B172R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B172R:C -> B136R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B136R:G -> B173R:A: outward } 0 15 {B173R:A -> B136R:G: outward } 0 16 {B172R:C -> B173R:A: adjacent_5p upward } 0 17 {B173R:A -> B172R:C: adjacent_3p downward } 0 18 {B173R:A -> B174R:G: adjacent_5p upward } 0 19 {B174R:G -> B173R:A: adjacent_3p downward } 0 20 {B174R:G -> B175R:A: adjacent_5p upward } 0 21 {B175R:A -> B174R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B134R:C 0 1 B135R:U 0 2 B136R:G 0 3 B137R:U 0 4 B171R:G 0 5 B172R:C 0 6 B173R:A 0 7 B174R:G 0 [Edges] 0 {B134R:C -> B135R:U: adjacent_5p upward } 0 1 {B135R:U -> B134R:C: adjacent_3p downward } 0 2 {B134R:C -> B174R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B174R:G -> B134R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B135R:U -> B136R:G: adjacent_5p } 0 5 {B136R:G -> B135R:U: adjacent_3p } 0 6 {B135R:U -> B173R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B173R:A -> B135R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B136R:G -> B137R:U: adjacent_5p upward } 0 9 {B137R:U -> B136R:G: adjacent_3p downward } 0 10 {B136R:G -> B172R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B172R:C -> B136R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B136R:G -> B173R:A: outward } 0 13 {B173R:A -> B136R:G: outward } 0 14 {B137R:U -> B171R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {B171R:G -> B137R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {B171R:G -> B172R:C: adjacent_5p upward } 0 17 {B172R:C -> B171R:G: adjacent_3p downward } 0 18 {B172R:C -> B173R:A: adjacent_5p upward } 0 19 {B173R:A -> B172R:C: adjacent_3p downward } 0 20 {B173R:A -> B174R:G: adjacent_5p upward } 0 21 {B174R:G -> B173R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B135R:U 0 1 B136R:G 0 2 B137R:U 0 3 B138R:U 0 4 B170R:G 0 5 B171R:G 0 6 B172R:C 0 7 B173R:A 0 [Edges] 0 {B135R:U -> B136R:G: adjacent_5p } 0 1 {B136R:G -> B135R:U: adjacent_3p } 0 2 {B135R:U -> B173R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B173R:A -> B135R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B136R:G -> B137R:U: adjacent_5p upward } 0 5 {B137R:U -> B136R:G: adjacent_3p downward } 0 6 {B136R:G -> B172R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B172R:C -> B136R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B136R:G -> B173R:A: outward } 0 9 {B173R:A -> B136R:G: outward } 0 10 {B137R:U -> B138R:U: adjacent_5p upward } 0 11 {B138R:U -> B137R:U: adjacent_3p downward } 0 12 {B137R:U -> B171R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {B171R:G -> B137R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {B138R:U -> B170R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {B170R:G -> B138R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {B170R:G -> B171R:G: adjacent_5p upward } 0 17 {B171R:G -> B170R:G: adjacent_3p downward } 0 18 {B171R:G -> B172R:C: adjacent_5p upward } 0 19 {B172R:C -> B171R:G: adjacent_3p downward } 0 20 {B172R:C -> B173R:A: adjacent_5p upward } 0 21 {B173R:A -> B172R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B136R:G 0 1 B137R:U 0 2 B138R:U 0 3 B139R:U 0 4 B169R:A 0 5 B170R:G 0 6 B171R:G 0 7 B172R:C 0 [Edges] 0 {B136R:G -> B137R:U: adjacent_5p upward } 0 1 {B137R:U -> B136R:G: adjacent_3p downward } 0 2 {B136R:G -> B172R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B172R:C -> B136R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B137R:U -> B138R:U: adjacent_5p upward } 0 5 {B138R:U -> B137R:U: adjacent_3p downward } 0 6 {B137R:U -> B171R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B171R:G -> B137R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {B138R:U -> B139R:U: adjacent_5p upward } 0 9 {B139R:U -> B138R:U: adjacent_3p downward } 0 10 {B138R:U -> B170R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B170R:G -> B138R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {B139R:U -> B169R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B169R:A -> B139R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B169R:A -> B170R:G: adjacent_5p upward } 0 15 {B170R:G -> B169R:A: adjacent_3p downward } 0 16 {B170R:G -> B171R:G: adjacent_5p upward } 0 17 {B171R:G -> B170R:G: adjacent_3p downward } 0 18 {B171R:G -> B172R:C: adjacent_5p upward } 0 19 {B172R:C -> B171R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B144R:G 0 1 B145R:G 0 2 B146R:U 0 3 B147R:C 0 4 B164R:A 0 5 B165R:G 0 6 B166R:C 0 7 B167R:C 0 [Edges] 0 {B144R:G -> B145R:G: adjacent_5p upward } 0 1 {B145R:G -> B144R:G: adjacent_3p downward } 0 2 {B144R:G -> B167R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B167R:C -> B144R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B145R:G -> B146R:U: adjacent_5p upward } 0 5 {B146R:U -> B145R:G: adjacent_3p downward } 0 6 {B145R:G -> B166R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B166R:C -> B145R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B146R:U -> B147R:C: adjacent_5p upward } 0 9 {B147R:C -> B146R:U: adjacent_3p downward } 0 10 {B146R:U -> B165R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B165R:G -> B146R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {B147R:C -> B164R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 13 {B164R:A -> B147R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 14 {B164R:A -> B165R:G: adjacent_5p upward } 0 15 {B165R:G -> B164R:A: adjacent_3p downward } 0 16 {B165R:G -> B166R:C: adjacent_5p upward } 0 17 {B166R:C -> B165R:G: adjacent_3p downward } 0 18 {B166R:C -> B167R:C: adjacent_5p upward } 0 19 {B167R:C -> B166R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B145R:G 0 1 B146R:U 0 2 B147R:C 0 3 B148R:A 0 4 B163R:C 0 5 B164R:A 0 6 B165R:G 0 7 B166R:C 0 [Edges] 0 {B145R:G -> B146R:U: adjacent_5p upward } 0 1 {B146R:U -> B145R:G: adjacent_3p downward } 0 2 {B145R:G -> B166R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B166R:C -> B145R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B146R:U -> B147R:C: adjacent_5p upward } 0 5 {B147R:C -> B146R:U: adjacent_3p downward } 0 6 {B146R:U -> B165R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B165R:G -> B146R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {B147R:C -> B148R:A: adjacent_5p } 0 9 {B148R:A -> B147R:C: adjacent_3p } 0 10 {B147R:C -> B164R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 11 {B164R:A -> B147R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 12 {B148R:A -> B163R:C: pairing antiparallel trans XXV Hh/Ww } 0 13 {B163R:C -> B148R:A: pairing antiparallel trans XXV Ww/Hh } 0 14 {B148R:A -> B164R:A: outward } 0 15 {B164R:A -> B148R:A: outward } 0 16 {B163R:C -> B164R:A: adjacent_5p upward } 0 17 {B164R:A -> B163R:C: adjacent_3p downward } 0 18 {B164R:A -> B165R:G: adjacent_5p upward } 0 19 {B165R:G -> B164R:A: adjacent_3p downward } 0 20 {B165R:G -> B166R:C: adjacent_5p upward } 0 21 {B166R:C -> B165R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B146R:U 0 1 B147R:C 0 2 B148R:A 0 3 B149R:G 0 4 B162R:G 0 5 B163R:C 0 6 B164R:A 0 7 B165R:G 0 [Edges] 0 {B146R:U -> B147R:C: adjacent_5p upward } 0 1 {B147R:C -> B146R:U: adjacent_3p downward } 0 2 {B146R:U -> B165R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B165R:G -> B146R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {B147R:C -> B148R:A: adjacent_5p } 0 5 {B148R:A -> B147R:C: adjacent_3p } 0 6 {B147R:C -> B162R:G: inward } 0 7 {B162R:G -> B147R:C: inward } 0 8 {B147R:C -> B164R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 9 {B164R:A -> B147R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 10 {B148R:A -> B149R:G: adjacent_5p upward } 0 11 {B149R:G -> B148R:A: adjacent_3p downward } 0 12 {B148R:A -> B163R:C: pairing antiparallel trans XXV Hh/Ww } 0 13 {B163R:C -> B148R:A: pairing antiparallel trans XXV Ww/Hh } 0 14 {B148R:A -> B164R:A: outward } 0 15 {B164R:A -> B148R:A: outward } 0 16 {B149R:G -> B162R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 17 {B162R:G -> B149R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 18 {B162R:G -> B163R:C: adjacent_5p } 0 19 {B163R:C -> B162R:G: adjacent_3p } 0 20 {B163R:C -> B164R:A: adjacent_5p upward } 0 21 {B164R:A -> B163R:C: adjacent_3p downward } 0 22 {B164R:A -> B165R:G: adjacent_5p upward } 0 23 {B165R:G -> B164R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . 8 . 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . 7 . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 9 15 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 B147R:C 0 1 B148R:A 0 2 B149R:G 0 3 B150R:G 0 4 B161R:A 0 5 B162R:G 0 6 B163R:C 0 7 B164R:A 0 [Edges] 0 {B147R:C -> B148R:A: adjacent_5p } 0 1 {B148R:A -> B147R:C: adjacent_3p } 0 2 {B147R:C -> B162R:G: inward } 0 3 {B162R:G -> B147R:C: inward } 0 4 {B147R:C -> B164R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 5 {B164R:A -> B147R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 6 {B148R:A -> B149R:G: adjacent_5p upward } 0 7 {B149R:G -> B148R:A: adjacent_3p downward } 0 8 {B148R:A -> B163R:C: pairing antiparallel trans XXV Hh/Ww } 0 9 {B163R:C -> B148R:A: pairing antiparallel trans XXV Ww/Hh } 0 10 {B148R:A -> B164R:A: outward } 0 11 {B164R:A -> B148R:A: outward } 0 12 {B149R:G -> B150R:G: adjacent_5p upward } 0 13 {B150R:G -> B149R:G: adjacent_3p downward } 0 14 {B149R:G -> B162R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 15 {B162R:G -> B149R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 16 {B150R:G -> B161R:A: pairing antiparallel cis VIII Ww/Ww } 0 17 {B161R:A -> B150R:G: pairing antiparallel cis VIII Ww/Ww } 0 18 {B161R:A -> B162R:G: adjacent_5p upward } 0 19 {B162R:G -> B161R:A: adjacent_3p downward } 0 20 {B162R:G -> B163R:C: adjacent_5p } 0 21 {B163R:C -> B162R:G: adjacent_3p } 0 22 {B163R:C -> B164R:A: adjacent_5p upward } 0 23 {B164R:A -> B163R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 . 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 18 . . 5 3 . 15 . 19 . 20 . 6 . 9 . . . 21 . 22 7 5 11 . . . . 23 . [GraphModel] [Vertices] 0 B148R:A 0 1 B149R:G 0 2 B150R:G 0 3 B151R:U 0 4 B160R:A 0 5 B161R:A 0 6 B162R:G 0 7 B163R:C 0 [Edges] 0 {B148R:A -> B149R:G: adjacent_5p upward } 0 1 {B149R:G -> B148R:A: adjacent_3p downward } 0 2 {B148R:A -> B163R:C: pairing antiparallel trans XXV Hh/Ww } 0 3 {B163R:C -> B148R:A: pairing antiparallel trans XXV Ww/Hh } 0 4 {B149R:G -> B150R:G: adjacent_5p upward } 0 5 {B150R:G -> B149R:G: adjacent_3p downward } 0 6 {B149R:G -> B162R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 7 {B162R:G -> B149R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 8 {B150R:G -> B151R:U: adjacent_5p upward } 0 9 {B151R:U -> B150R:G: adjacent_3p downward } 0 10 {B150R:G -> B161R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {B161R:A -> B150R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {B151R:U -> B160R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B160R:A -> B151R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B160R:A -> B161R:A: adjacent_5p upward } 0 15 {B161R:A -> B160R:A: adjacent_3p downward } 0 16 {B161R:A -> B162R:G: adjacent_5p upward } 0 17 {B162R:G -> B161R:A: adjacent_3p downward } 0 18 {B162R:G -> B163R:C: adjacent_5p } 0 19 {B163R:C -> B162R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B149R:G 0 1 B150R:G 0 2 B151R:U 0 3 B152R:C 0 4 B159R:G 0 5 B160R:A 0 6 B161R:A 0 7 B162R:G 0 [Edges] 0 {B149R:G -> B150R:G: adjacent_5p upward } 0 1 {B150R:G -> B149R:G: adjacent_3p downward } 0 2 {B149R:G -> B162R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 3 {B162R:G -> B149R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 4 {B150R:G -> B151R:U: adjacent_5p upward } 0 5 {B151R:U -> B150R:G: adjacent_3p downward } 0 6 {B150R:G -> B161R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {B161R:A -> B150R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {B151R:U -> B152R:C: adjacent_5p upward } 0 9 {B152R:C -> B151R:U: adjacent_3p downward } 0 10 {B151R:U -> B160R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B160R:A -> B151R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B152R:C -> B159R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B159R:G -> B152R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B159R:G -> B160R:A: adjacent_5p upward } 0 15 {B160R:A -> B159R:G: adjacent_3p downward } 0 16 {B160R:A -> B161R:A: adjacent_5p upward } 0 17 {B161R:A -> B160R:A: adjacent_3p downward } 0 18 {B161R:A -> B162R:G: adjacent_5p upward } 0 19 {B162R:G -> B161R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B150R:G 0 1 B151R:U 0 2 B152R:C 0 3 B153R:C 0 4 B158R:G 0 5 B159R:G 0 6 B160R:A 0 7 B161R:A 0 [Edges] 0 {B150R:G -> B151R:U: adjacent_5p upward } 0 1 {B151R:U -> B150R:G: adjacent_3p downward } 0 2 {B150R:G -> B161R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {B161R:A -> B150R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {B151R:U -> B152R:C: adjacent_5p upward } 0 5 {B152R:C -> B151R:U: adjacent_3p downward } 0 6 {B151R:U -> B160R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B160R:A -> B151R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B152R:C -> B153R:C: adjacent_5p } 0 9 {B153R:C -> B152R:C: adjacent_3p } 0 10 {B152R:C -> B159R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B159R:G -> B152R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B153R:C -> B158R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B158R:G -> B153R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B158R:G -> B159R:G: adjacent_5p upward } 0 15 {B159R:G -> B158R:G: adjacent_3p downward } 0 16 {B159R:G -> B160R:A: adjacent_5p upward } 0 17 {B160R:A -> B159R:G: adjacent_3p downward } 0 18 {B160R:A -> B161R:A: adjacent_5p upward } 0 19 {B161R:A -> B160R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B151R:U 0 1 B152R:C 0 2 B153R:C 0 3 B154R:G 0 4 B157R:A 0 5 B158R:G 0 6 B159R:G 0 7 B160R:A 0 [Edges] 0 {B151R:U -> B152R:C: adjacent_5p upward } 0 1 {B152R:C -> B151R:U: adjacent_3p downward } 0 2 {B151R:U -> B160R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B160R:A -> B151R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B152R:C -> B153R:C: adjacent_5p } 0 5 {B153R:C -> B152R:C: adjacent_3p } 0 6 {B152R:C -> B159R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B159R:G -> B152R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B153R:C -> B154R:G: adjacent_5p upward } 0 9 {B154R:G -> B153R:C: adjacent_3p downward } 0 10 {B153R:C -> B158R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B158R:G -> B153R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B154R:G -> B157R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 13 {B157R:A -> B154R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 14 {B154R:G -> B158R:G: outward } 0 15 {B158R:G -> B154R:G: outward } 0 16 {B157R:A -> B158R:G: adjacent_5p } 0 17 {B158R:G -> B157R:A: adjacent_3p } 0 18 {B158R:G -> B159R:G: adjacent_5p upward } 0 19 {B159R:G -> B158R:G: adjacent_3p downward } 0 20 {B159R:G -> B160R:A: adjacent_5p upward } 0 21 {B160R:A -> B159R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A102R:C 0 1 A103R:U 0 2 A104R:G 0 3 A105R:G 0 4 B126R:A 0 5 B127R:C 0 6 B128R:A 0 7 B129R:G 0 [Edges] 0 {A102R:C -> A103R:U: adjacent_5p upward } 0 1 {A103R:U -> A102R:C: adjacent_3p downward } 0 2 {A102R:C -> B129R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B129R:G -> A102R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A103R:U -> A104R:G: adjacent_5p upward } 0 5 {A104R:G -> A103R:U: adjacent_3p downward } 0 6 {A103R:U -> B128R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B128R:A -> A103R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A104R:G -> A105R:G: adjacent_5p upward } 0 9 {A105R:G -> A104R:G: adjacent_3p downward } 0 10 {A104R:G -> B127R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B127R:C -> A104R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A104R:G -> B128R:A: outward } 0 13 {B128R:A -> A104R:G: outward } 0 14 {A105R:G -> B126R:A: pairing antiparallel cis VIII Ww/Ww } 0 15 {B126R:A -> A105R:G: pairing antiparallel cis VIII Ww/Ww } 0 16 {B126R:A -> B127R:C: adjacent_5p upward } 0 17 {B127R:C -> B126R:A: adjacent_3p downward } 0 18 {B127R:C -> B128R:A: adjacent_5p } 0 19 {B128R:A -> B127R:C: adjacent_3p } 0 20 {B128R:A -> B129R:G: adjacent_5p upward } 0 21 {B129R:G -> B128R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C202R:C 0 1 C203R:U 0 2 C204R:G 0 3 C205R:G 0 4 D226R:A 0 5 D227R:C 0 6 D228R:A 0 7 D229R:G 0 [Edges] 0 {C202R:C -> C203R:U: adjacent_5p upward } 0 1 {C203R:U -> C202R:C: adjacent_3p downward } 0 2 {C202R:C -> D229R:G: pairing antiparallel cis 130 Ww/Ww } 0 3 {D229R:G -> C202R:C: pairing antiparallel cis 130 Ww/Ww } 0 4 {C203R:U -> C204R:G: adjacent_5p upward } 0 5 {C204R:G -> C203R:U: adjacent_3p downward } 0 6 {C203R:U -> D228R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D228R:A -> C203R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C204R:G -> C205R:G: adjacent_5p upward } 0 9 {C205R:G -> C204R:G: adjacent_3p downward } 0 10 {C204R:G -> D227R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D227R:C -> C204R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C205R:G -> D226R:A: pairing antiparallel cis one_hbond Wh/Bs } 0 13 {D226R:A -> C205R:G: pairing antiparallel cis one_hbond Bs/Wh } 0 14 {D226R:A -> D227R:C: adjacent_5p } 0 15 {D227R:C -> D226R:A: adjacent_3p } 0 16 {D227R:C -> D228R:A: adjacent_5p } 0 17 {D228R:A -> D227R:C: adjacent_3p } 0 18 {D228R:A -> D229R:G: adjacent_5p upward } 0 19 {D229R:G -> D228R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E302R:C 0 1 E303R:U 0 2 E304R:G 0 3 E305R:G 0 4 F326R:A 0 5 F327R:C 0 6 F328R:A 0 7 F329R:G 0 [Edges] 0 {E302R:C -> E303R:U: adjacent_5p } 0 1 {E303R:U -> E302R:C: adjacent_3p } 0 2 {E302R:C -> F329R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {F329R:G -> E302R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E303R:U -> E304R:G: adjacent_5p upward } 0 5 {E304R:G -> E303R:U: adjacent_3p downward } 0 6 {E303R:U -> F328R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {F328R:A -> E303R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {E304R:G -> E305R:G: adjacent_5p upward } 0 9 {E305R:G -> E304R:G: adjacent_3p downward } 0 10 {E304R:G -> F327R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {F327R:C -> E304R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E304R:G -> F328R:A: outward } 0 13 {F328R:A -> E304R:G: outward } 0 14 {E305R:G -> F326R:A: pairing antiparallel cis VIII Ww/Ww } 0 15 {F326R:A -> E305R:G: pairing antiparallel cis VIII Ww/Ww } 0 16 {F326R:A -> F327R:C: adjacent_5p upward } 0 17 {F327R:C -> F326R:A: adjacent_3p downward } 0 18 {F327R:C -> F328R:A: adjacent_5p } 0 19 {F328R:A -> F327R:C: adjacent_3p } 0 20 {F328R:A -> F329R:G: adjacent_5p upward } 0 21 {F329R:G -> F328R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 G402R:C 0 1 G403R:U 0 2 G404R:G 0 3 G405R:G 0 4 H426R:A 0 5 H427R:C 0 6 H428R:A 0 7 H429R:G 0 [Edges] 0 {G402R:C -> G403R:U: adjacent_5p upward } 0 1 {G403R:U -> G402R:C: adjacent_3p downward } 0 2 {G402R:C -> H429R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {H429R:G -> G402R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {G403R:U -> G404R:G: adjacent_5p upward } 0 5 {G404R:G -> G403R:U: adjacent_3p downward } 0 6 {G403R:U -> H428R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {H428R:A -> G403R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {G404R:G -> G405R:G: adjacent_5p upward } 0 9 {G405R:G -> G404R:G: adjacent_3p downward } 0 10 {G404R:G -> H427R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {H427R:C -> G404R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {G405R:G -> H426R:A: pairing antiparallel cis one_hbond Wh/Bs } 0 13 {H426R:A -> G405R:G: pairing antiparallel cis one_hbond Bs/Wh } 0 14 {H426R:A -> H427R:C: adjacent_5p } 0 15 {H427R:C -> H426R:A: adjacent_3p } 0 16 {H427R:C -> H428R:A: adjacent_5p upward } 0 17 {H428R:A -> H427R:C: adjacent_3p downward } 0 18 {H428R:A -> H429R:G: adjacent_5p upward } 0 19 {H429R:G -> H428R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 C9R:A 0 1 C10R:G 0 2 C11R:A 0 3 C12R:C 0 4 D51R:G 0 5 D52R:U 0 6 D53R:C 0 7 D54R:U 0 [Edges] 0 {C9R:A -> C10R:G: adjacent_5p upward } 0 1 {C10R:G -> C9R:A: adjacent_3p downward } 0 2 {C9R:A -> D54R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D54R:U -> C9R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C10R:G -> C11R:A: adjacent_5p upward } 0 5 {C11R:A -> C10R:G: adjacent_3p downward } 0 6 {C10R:G -> D53R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D53R:C -> C10R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C11R:A -> C12R:C: adjacent_5p upward } 0 9 {C12R:C -> C11R:A: adjacent_3p downward } 0 10 {C11R:A -> D52R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D52R:U -> C11R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C12R:C -> D51R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D51R:G -> C12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D51R:G -> D52R:U: adjacent_5p upward } 0 15 {D52R:U -> D51R:G: adjacent_3p downward } 0 16 {D52R:U -> D53R:C: adjacent_5p upward } 0 17 {D53R:C -> D52R:U: adjacent_3p downward } 0 18 {D53R:C -> D54R:U: adjacent_5p upward } 0 19 {D54R:U -> D53R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C20R:C 0 1 C21R:C 0 2 C22R:G 0 3 C23R:G 0 4 D46R:C 0 5 D47R:C 0 6 D48R:G 0 7 D49R:G 0 [Edges] 0 {C20R:C -> C21R:C: adjacent_5p upward } 0 1 {C21R:C -> C20R:C: adjacent_3p downward } 0 2 {C20R:C -> D49R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D49R:G -> C20R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C21R:C -> C22R:G: adjacent_5p } 0 5 {C22R:G -> C21R:C: adjacent_3p } 0 6 {C21R:C -> D48R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D48R:G -> C21R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C22R:G -> C23R:G: adjacent_5p upward } 0 9 {C23R:G -> C22R:G: adjacent_3p downward } 0 10 {C22R:G -> D47R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D47R:C -> C22R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C22R:G -> D48R:G: outward } 0 13 {D48R:G -> C22R:G: outward } 0 14 {C23R:G -> D46R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D46R:C -> C23R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D46R:C -> D47R:C: adjacent_5p upward } 0 17 {D47R:C -> D46R:C: adjacent_3p downward } 0 18 {D47R:C -> D48R:G: adjacent_5p } 0 19 {D48R:G -> D47R:C: adjacent_3p } 0 20 {D48R:G -> D49R:G: adjacent_5p upward } 0 21 {D49R:G -> D48R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C25R:G 0 1 C26R:U 0 2 C27R:C 0 3 C28R:U 0 4 D35R:A 0 5 D36R:G 0 6 D37R:A 0 7 D38R:C 0 [Edges] 0 {C25R:G -> C26R:U: adjacent_5p upward } 0 1 {C26R:U -> C25R:G: adjacent_3p downward } 0 2 {C25R:G -> D38R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D38R:C -> C25R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C26R:U -> C27R:C: adjacent_5p upward } 0 5 {C27R:C -> C26R:U: adjacent_3p downward } 0 6 {C26R:U -> D37R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D37R:A -> C26R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C27R:C -> C28R:U: adjacent_5p upward } 0 9 {C28R:U -> C27R:C: adjacent_3p downward } 0 10 {C27R:C -> D36R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D36R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C28R:U -> D35R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {D35R:A -> C28R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {D35R:A -> D36R:G: adjacent_5p upward } 0 15 {D36R:G -> D35R:A: adjacent_3p downward } 0 16 {D36R:G -> D37R:A: adjacent_5p upward } 0 17 {D37R:A -> D36R:G: adjacent_3p downward } 0 18 {D37R:A -> D38R:C: adjacent_5p upward } 0 19 {D38R:C -> D37R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:U 0 1 A3R:G 0 2 A4R:C 0 3 A5R:G 0 4 A20R:A 0 5 A21R:G 0 6 A22R:C 0 7 A23R:G 0 [Edges] 0 {A2R:U -> A3R:G: adjacent_5p } 0 1 {A3R:G -> A2R:U: adjacent_3p } 0 2 {A2R:U -> A23R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A23R:G -> A2R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A3R:G -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A21R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A20R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A20R:A -> A5R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A20R:A -> A21R:G: adjacent_5p upward } 0 15 {A21R:G -> A20R:A: adjacent_3p downward } 0 16 {A21R:G -> A22R:C: adjacent_5p } 0 17 {A22R:C -> A21R:G: adjacent_3p } 0 18 {A22R:C -> A23R:G: adjacent_5p } 0 19 {A23R:G -> A22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:C 0 2 A5R:G 0 3 A6R:A 0 4 A19R:G 0 5 A20R:A 0 6 A21R:G 0 7 A22R:C 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A6R:A: adjacent_5p } 0 9 {A6R:A -> A5R:G: adjacent_3p } 0 10 {A5R:G -> A20R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {A20R:A -> A5R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {A6R:A -> A19R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 13 {A19R:G -> A6R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 14 {A6R:A -> A20R:A: outward } 0 15 {A20R:A -> A6R:A: outward } 0 16 {A19R:G -> A20R:A: adjacent_5p } 0 17 {A20R:A -> A19R:G: adjacent_3p } 0 18 {A20R:A -> A21R:G: adjacent_5p upward } 0 19 {A21R:G -> A20R:A: adjacent_3p downward } 0 20 {A21R:G -> A22R:C: adjacent_5p } 0 21 {A22R:C -> A21R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:G 0 2 A6R:A 0 3 A7R:A 0 4 A18R:C 0 5 A19R:G 0 6 A20R:A 0 7 A21R:G 0 [Edges] 0 {A4R:C -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:G -> A6R:A: adjacent_5p } 0 5 {A6R:A -> A5R:G: adjacent_3p } 0 6 {A5R:G -> A20R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {A20R:A -> A5R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {A6R:A -> A7R:A: adjacent_5p upward } 0 9 {A7R:A -> A6R:A: adjacent_3p downward } 0 10 {A6R:A -> A19R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 11 {A19R:G -> A6R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 12 {A6R:A -> A20R:A: outward } 0 13 {A20R:A -> A6R:A: outward } 0 14 {A7R:A -> A18R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 15 {A18R:C -> A7R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 16 {A18R:C -> A19R:G: adjacent_5p upward } 0 17 {A19R:G -> A18R:C: adjacent_3p downward } 0 18 {A19R:G -> A20R:A: adjacent_5p } 0 19 {A20R:A -> A19R:G: adjacent_3p } 0 20 {A20R:A -> A21R:G: adjacent_5p upward } 0 21 {A21R:G -> A20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:A 0 2 A7R:A 0 3 A8R:G 0 4 A17R:C 0 5 A18R:C 0 6 A19R:G 0 7 A20R:A 0 [Edges] 0 {A5R:G -> A6R:A: adjacent_5p } 0 1 {A6R:A -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A20R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {A20R:A -> A5R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {A6R:A -> A7R:A: adjacent_5p upward } 0 5 {A7R:A -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> A19R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 7 {A19R:G -> A6R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 8 {A6R:A -> A20R:A: outward } 0 9 {A20R:A -> A6R:A: outward } 0 10 {A7R:A -> A8R:G: adjacent_5p upward } 0 11 {A8R:G -> A7R:A: adjacent_3p downward } 0 12 {A7R:A -> A18R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 13 {A18R:C -> A7R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 14 {A8R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A17R:C -> A18R:C: adjacent_5p upward } 0 17 {A18R:C -> A17R:C: adjacent_3p downward } 0 18 {A18R:C -> A19R:G: adjacent_5p upward } 0 19 {A19R:G -> A18R:C: adjacent_3p downward } 0 20 {A19R:G -> A20R:A: adjacent_5p } 0 21 {A20R:A -> A19R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:A 0 2 A8R:G 0 3 A9R:A 0 4 A16R:U 0 5 A17R:C 0 6 A18R:C 0 7 A19R:G 0 [Edges] 0 {A6R:A -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> A19R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 3 {A19R:G -> A6R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 4 {A7R:A -> A8R:G: adjacent_5p upward } 0 5 {A8R:G -> A7R:A: adjacent_3p downward } 0 6 {A7R:A -> A18R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 7 {A18R:C -> A7R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 8 {A8R:G -> A9R:A: adjacent_5p upward } 0 9 {A9R:A -> A8R:G: adjacent_3p downward } 0 10 {A8R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A16R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A16R:U -> A17R:C: adjacent_5p upward } 0 15 {A17R:C -> A16R:U: adjacent_3p downward } 0 16 {A17R:C -> A18R:C: adjacent_5p upward } 0 17 {A18R:C -> A17R:C: adjacent_3p downward } 0 18 {A18R:C -> A19R:G: adjacent_5p upward } 0 19 {A19R:G -> A18R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:A 0 1 A8R:G 0 2 A9R:A 0 3 A10R:C 0 4 A15R:G 0 5 A16R:U 0 6 A17R:C 0 7 A18R:C 0 [Edges] 0 {A7R:A -> A8R:G: adjacent_5p upward } 0 1 {A8R:G -> A7R:A: adjacent_3p downward } 0 2 {A7R:A -> A18R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 3 {A18R:C -> A7R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 4 {A8R:G -> A9R:A: adjacent_5p upward } 0 5 {A9R:A -> A8R:G: adjacent_3p downward } 0 6 {A8R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:A -> A10R:C: adjacent_5p upward } 0 9 {A10R:C -> A9R:A: adjacent_3p downward } 0 10 {A9R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A16R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A10R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A15R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A15R:G -> A16R:U: adjacent_5p upward } 0 15 {A16R:U -> A15R:G: adjacent_3p downward } 0 16 {A16R:U -> A17R:C: adjacent_5p upward } 0 17 {A17R:C -> A16R:U: adjacent_3p downward } 0 18 {A17R:C -> A18R:C: adjacent_5p upward } 0 19 {A18R:C -> A17R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 C32R:G 0 1 C33R:A 0 2 C34R:G 0 3 C35R:G 0 4 C41R:C 0 5 C42R:C 0 6 C43R:G 0 7 C44R:A 0 [Edges] 0 {C32R:G -> C33R:A: adjacent_5p } 0 1 {C33R:A -> C32R:G: adjacent_3p } 0 2 {C32R:G -> C44R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {C44R:A -> C32R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {C33R:A -> C34R:G: adjacent_5p upward } 0 5 {C34R:G -> C33R:A: adjacent_3p downward } 0 6 {C33R:A -> C43R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {C43R:G -> C33R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {C33R:A -> C44R:A: outward } 0 9 {C44R:A -> C33R:A: outward } 0 10 {C34R:G -> C35R:G: adjacent_5p upward } 0 11 {C35R:G -> C34R:G: adjacent_3p downward } 0 12 {C34R:G -> C42R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C42R:C -> C34R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C35R:G -> C41R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C41R:C -> C35R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C41R:C -> C42R:C: adjacent_5p upward } 0 17 {C42R:C -> C41R:C: adjacent_3p downward } 0 18 {C42R:C -> C43R:G: adjacent_5p upward } 0 19 {C43R:G -> C42R:C: adjacent_3p downward } 0 20 {C43R:G -> C44R:A: adjacent_5p } 0 21 {C44R:A -> C43R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D32R:G 0 1 D33R:A 0 2 D34R:G 0 3 D35R:G 0 4 D41R:C 0 5 D42R:C 0 6 D43R:G 0 7 D44R:A 0 [Edges] 0 {D32R:G -> D33R:A: adjacent_5p } 0 1 {D33R:A -> D32R:G: adjacent_3p } 0 2 {D32R:G -> D43R:G: inward } 0 3 {D43R:G -> D32R:G: inward } 0 4 {D32R:G -> D44R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {D44R:A -> D32R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {D33R:A -> D34R:G: adjacent_5p upward } 0 7 {D34R:G -> D33R:A: adjacent_3p downward } 0 8 {D33R:A -> D43R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {D43R:G -> D33R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {D33R:A -> D44R:A: outward } 0 11 {D44R:A -> D33R:A: outward } 0 12 {D34R:G -> D35R:G: adjacent_5p upward } 0 13 {D35R:G -> D34R:G: adjacent_3p downward } 0 14 {D34R:G -> D42R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D42R:C -> D34R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D35R:G -> D41R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {D41R:C -> D35R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {D41R:C -> D42R:C: adjacent_5p upward } 0 19 {D42R:C -> D41R:C: adjacent_3p downward } 0 20 {D42R:C -> D43R:G: adjacent_5p upward } 0 21 {D43R:G -> D42R:C: adjacent_3p downward } 0 22 {D43R:G -> D44R:A: adjacent_5p } 0 23 {D44R:A -> D43R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 18 . . 5 . . 15 . 19 . 20 . 6 3 9 . . . 21 . 22 7 5 11 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A2R:C 0 1 A3R:G 0 2 A4R:G 0 3 A5R:C 0 4 A15R:G 0 5 A16R:C 0 6 A17R:C 0 7 A18R:G 0 [Edges] 0 {A2R:C -> A3R:G: adjacent_5p } 0 1 {A3R:G -> A2R:C: adjacent_3p } 0 2 {A2R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A18R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:G -> A18R:G: outward } 0 9 {A18R:G -> A3R:G: outward } 0 10 {A4R:G -> A5R:C: adjacent_5p upward } 0 11 {A5R:C -> A4R:G: adjacent_3p downward } 0 12 {A4R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A16R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A5R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A15R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A15R:G -> A16R:C: adjacent_5p } 0 17 {A16R:C -> A15R:G: adjacent_3p } 0 18 {A16R:C -> A17R:C: adjacent_5p } 0 19 {A17R:C -> A16R:C: adjacent_3p } 0 20 {A17R:C -> A18R:G: adjacent_5p } 0 21 {A18R:G -> A17R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:G 0 2 A5R:C 0 3 A6R:C 0 4 A14R:G 0 5 A15R:G 0 6 A16R:C 0 7 A17R:C 0 [Edges] 0 {A3R:G -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A16R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:C -> A6R:C: adjacent_5p } 0 9 {A6R:C -> A5R:C: adjacent_3p } 0 10 {A5R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A15R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A14R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:G -> A15R:G: adjacent_5p upward } 0 15 {A15R:G -> A14R:G: adjacent_3p downward } 0 16 {A15R:G -> A16R:C: adjacent_5p } 0 17 {A16R:C -> A15R:G: adjacent_3p } 0 18 {A16R:C -> A17R:C: adjacent_5p } 0 19 {A17R:C -> A16R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:C 0 2 A10R:U 0 3 A11R:C 0 4 A31R:G 0 5 A32R:A 0 6 A33R:G 0 7 A34R:C 0 [Edges] 0 {A8R:G -> A9R:C: adjacent_5p upward } 0 1 {A9R:C -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A34R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:C -> A10R:U: adjacent_5p } 0 5 {A10R:U -> A9R:C: adjacent_3p } 0 6 {A9R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A33R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:U -> A11R:C: adjacent_5p upward } 0 9 {A11R:C -> A10R:U: adjacent_3p downward } 0 10 {A10R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A32R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A11R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A31R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A31R:G -> A32R:A: adjacent_5p upward } 0 15 {A32R:A -> A31R:G: adjacent_3p downward } 0 16 {A32R:A -> A33R:G: adjacent_5p upward } 0 17 {A33R:G -> A32R:A: adjacent_3p downward } 0 18 {A33R:G -> A34R:C: adjacent_5p upward } 0 19 {A34R:C -> A33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A9R:C 0 1 A10R:U 0 2 A11R:C 0 3 A12R:C 0 4 A30R:G 0 5 A31R:G 0 6 A32R:A 0 7 A33R:G 0 [Edges] 0 {A9R:C -> A10R:U: adjacent_5p } 0 1 {A10R:U -> A9R:C: adjacent_3p } 0 2 {A9R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A33R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:U -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:U: adjacent_3p downward } 0 6 {A10R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A32R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:C -> A12R:C: adjacent_5p upward } 0 9 {A12R:C -> A11R:C: adjacent_3p downward } 0 10 {A11R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A31R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A30R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A30R:G -> A31R:G: adjacent_5p upward } 0 15 {A31R:G -> A30R:G: adjacent_3p downward } 0 16 {A31R:G -> A32R:A: adjacent_5p upward } 0 17 {A32R:A -> A31R:G: adjacent_3p downward } 0 18 {A32R:A -> A33R:G: adjacent_5p upward } 0 19 {A33R:G -> A32R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:U 0 1 A11R:C 0 2 A12R:C 0 3 A13R:A 0 4 A29R:U 0 5 A30R:G 0 6 A31R:G 0 7 A32R:A 0 [Edges] 0 {A10R:U -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:U: adjacent_3p downward } 0 2 {A10R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A32R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A11R:C -> A12R:C: adjacent_5p upward } 0 5 {A12R:C -> A11R:C: adjacent_3p downward } 0 6 {A11R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A31R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:C -> A13R:A: adjacent_5p } 0 9 {A13R:A -> A12R:C: adjacent_3p } 0 10 {A12R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A30R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:A -> A29R:U: pairing antiparallel cis one_hbond 48 Wh/Bh } 0 13 {A29R:U -> A13R:A: pairing antiparallel cis one_hbond 48 Bh/Wh } 0 14 {A29R:U -> A30R:G: adjacent_5p upward } 0 15 {A30R:G -> A29R:U: adjacent_3p downward } 0 16 {A30R:G -> A31R:G: adjacent_5p upward } 0 17 {A31R:G -> A30R:G: adjacent_3p downward } 0 18 {A31R:G -> A32R:A: adjacent_5p upward } 0 19 {A32R:A -> A31R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A13R:A 0 1 A14R:G 0 2 A15R:G 0 3 A16R:C 0 4 A26R:A 0 5 A27R:U 0 6 A28R:A 0 7 A29R:U 0 [Edges] 0 {A13R:A -> A14R:G: adjacent_5p upward } 0 1 {A14R:G -> A13R:A: adjacent_3p downward } 0 2 {A13R:A -> A29R:U: pairing antiparallel cis one_hbond 48 Wh/Bh } 0 3 {A29R:U -> A13R:A: pairing antiparallel cis one_hbond 48 Bh/Wh } 0 4 {A14R:G -> A15R:G: adjacent_5p upward } 0 5 {A15R:G -> A14R:G: adjacent_3p downward } 0 6 {A15R:G -> A16R:C: adjacent_5p } 0 7 {A16R:C -> A15R:G: adjacent_3p } 0 8 {A16R:C -> A26R:A: pairing antiparallel cis one_hbond Ss/Bs } 0 9 {A26R:A -> A16R:C: pairing antiparallel cis one_hbond Bs/Ss } 0 10 {A26R:A -> A27R:U: adjacent_5p upward } 0 11 {A27R:U -> A26R:A: adjacent_3p downward } 0 12 {A27R:U -> A28R:A: adjacent_5p } 0 13 {A28R:A -> A27R:U: adjacent_3p } 0 14 {A28R:A -> A29R:U: adjacent_5p } 0 15 {A29R:U -> A28R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 . 6 . . . . . 13 . 14 7 3 . . . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:U 0 2 4R:G 0 3 5R:G 0 4 26R:A 0 5 27R:C 0 6 28R:A 0 7 29R:C 0 [Edges] 0 {2R:G -> 3R:U: adjacent_5p upward } 0 1 {3R:U -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 29R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {29R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:U -> 4R:G: adjacent_5p upward } 0 5 {4R:G -> 3R:U: adjacent_3p downward } 0 6 {3R:U -> 28R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {28R:A -> 3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {4R:G -> 5R:G: adjacent_5p upward } 0 9 {5R:G -> 4R:G: adjacent_3p downward } 0 10 {4R:G -> 27R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {27R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {4R:G -> 28R:A: outward } 0 13 {28R:A -> 4R:G: outward } 0 14 {5R:G -> 26R:A: pairing antiparallel cis VIII Ww/Ww } 0 15 {26R:A -> 5R:G: pairing antiparallel cis VIII Ww/Ww } 0 16 {26R:A -> 27R:C: adjacent_5p upward } 0 17 {27R:C -> 26R:A: adjacent_3p downward } 0 18 {27R:C -> 28R:A: adjacent_5p upward } 0 19 {28R:A -> 27R:C: adjacent_3p downward } 0 20 {28R:A -> 29R:C: adjacent_5p upward } 0 21 {29R:C -> 28R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 9R:C 0 1 10R:A 0 2 11R:G 0 3 12R:C 0 4 17R:G 0 5 18R:C 0 6 19R:U 0 7 20R:G 0 [Edges] 0 {9R:C -> 10R:A: adjacent_5p } 0 1 {10R:A -> 9R:C: adjacent_3p } 0 2 {9R:C -> 20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {20R:G -> 9R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {10R:A -> 11R:G: adjacent_5p upward } 0 5 {11R:G -> 10R:A: adjacent_3p downward } 0 6 {10R:A -> 19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {19R:U -> 10R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {11R:G -> 12R:C: adjacent_5p upward } 0 9 {12R:C -> 11R:G: adjacent_3p downward } 0 10 {11R:G -> 18R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {18R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {12R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {17R:G -> 12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {17R:G -> 18R:C: adjacent_5p upward } 0 15 {18R:C -> 17R:G: adjacent_3p downward } 0 16 {18R:C -> 19R:U: adjacent_5p upward } 0 17 {19R:U -> 18R:C: adjacent_3p downward } 0 18 {19R:U -> 20R:G: adjacent_5p upward } 0 19 {20R:G -> 19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 10R:A 0 1 11R:G 0 2 12R:C 0 3 13R:U 0 4 16R:G 0 5 17R:G 0 6 18R:C 0 7 19R:U 0 [Edges] 0 {10R:A -> 11R:G: adjacent_5p upward } 0 1 {11R:G -> 10R:A: adjacent_3p downward } 0 2 {10R:A -> 19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {19R:U -> 10R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {11R:G -> 12R:C: adjacent_5p upward } 0 5 {12R:C -> 11R:G: adjacent_3p downward } 0 6 {11R:G -> 18R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {18R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {12R:C -> 13R:U: adjacent_5p upward } 0 9 {13R:U -> 12R:C: adjacent_3p downward } 0 10 {12R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {17R:G -> 12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {13R:U -> 16R:G: pairing parallel trans one_hbond Bs/Ww } 0 13 {16R:G -> 13R:U: pairing parallel trans one_hbond Ww/Bs } 0 14 {16R:G -> 17R:G: adjacent_5p outward } 0 15 {17R:G -> 16R:G: adjacent_3p outward } 0 16 {17R:G -> 18R:C: adjacent_5p upward } 0 17 {18R:C -> 17R:G: adjacent_3p downward } 0 18 {18R:C -> 19R:U: adjacent_5p upward } 0 19 {19R:U -> 18R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 C2R:A 0 1 C3R:G 0 2 C4R:G 0 3 C5R:A 0 4 C16R:C 0 5 C17R:C 0 6 C18R:C 0 7 C19R:U 0 [Edges] 0 {C2R:A -> C3R:G: adjacent_5p upward } 0 1 {C3R:G -> C2R:A: adjacent_3p downward } 0 2 {C2R:A -> C19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C19R:U -> C2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C3R:G -> C4R:G: adjacent_5p upward } 0 5 {C4R:G -> C3R:G: adjacent_3p downward } 0 6 {C3R:G -> C18R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C18R:C -> C3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:G -> C5R:A: adjacent_5p upward } 0 9 {C5R:A -> C4R:G: adjacent_3p downward } 0 10 {C4R:G -> C17R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C17R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C4R:G -> C18R:C: outward } 0 13 {C18R:C -> C4R:G: outward } 0 14 {C5R:A -> C16R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 15 {C16R:C -> C5R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 16 {C16R:C -> C17R:C: adjacent_5p upward } 0 17 {C17R:C -> C16R:C: adjacent_3p downward } 0 18 {C17R:C -> C18R:C: adjacent_5p upward } 0 19 {C18R:C -> C17R:C: adjacent_3p downward } 0 20 {C18R:C -> C19R:U: adjacent_5p upward } 0 21 {C19R:U -> C18R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C2R:G 0 1 C3R:A 0 2 C4R:G 0 3 C5R:C 0 4 C68R:G 0 5 C69R:U 0 6 C70R:U 0 7 C71R:C 0 [Edges] 0 {C2R:G -> C3R:A: adjacent_5p upward } 0 1 {C3R:A -> C2R:G: adjacent_3p downward } 0 2 {C2R:G -> C71R:C: pairing antiparallel cis one_hbond Ws/Ww } 0 3 {C71R:C -> C2R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 4 {C3R:A -> C4R:G: adjacent_5p upward } 0 5 {C4R:G -> C3R:A: adjacent_3p downward } 0 6 {C3R:A -> C70R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C70R:U -> C3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C4R:G -> C5R:C: adjacent_5p upward } 0 9 {C5R:C -> C4R:G: adjacent_3p downward } 0 10 {C4R:G -> C69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {C69R:U -> C4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {C5R:C -> C68R:G: pairing antiparallel cis 130 Ww/Ww } 0 13 {C68R:G -> C5R:C: pairing antiparallel cis 130 Ww/Ww } 0 14 {C68R:G -> C69R:U: adjacent_5p upward } 0 15 {C69R:U -> C68R:G: adjacent_3p downward } 0 16 {C69R:U -> C70R:U: adjacent_5p } 0 17 {C70R:U -> C69R:U: adjacent_3p } 0 18 {C70R:U -> C71R:C: adjacent_5p } 0 19 {C71R:C -> C70R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C3R:A 0 1 C4R:G 0 2 C5R:C 0 3 C6R:G 0 4 C67R:C 0 5 C68R:G 0 6 C69R:U 0 7 C70R:U 0 [Edges] 0 {C3R:A -> C4R:G: adjacent_5p upward } 0 1 {C4R:G -> C3R:A: adjacent_3p downward } 0 2 {C3R:A -> C70R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C70R:U -> C3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C4R:G -> C5R:C: adjacent_5p upward } 0 5 {C5R:C -> C4R:G: adjacent_3p downward } 0 6 {C4R:G -> C69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {C69R:U -> C4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {C5R:C -> C6R:G: adjacent_5p upward } 0 9 {C6R:G -> C5R:C: adjacent_3p downward } 0 10 {C5R:C -> C68R:G: pairing antiparallel cis 130 Ww/Ww } 0 11 {C68R:G -> C5R:C: pairing antiparallel cis 130 Ww/Ww } 0 12 {C6R:G -> C67R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C67R:C -> C6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C6R:G -> C68R:G: outward } 0 15 {C68R:G -> C6R:G: outward } 0 16 {C67R:C -> C68R:G: adjacent_5p } 0 17 {C68R:G -> C67R:C: adjacent_3p } 0 18 {C68R:G -> C69R:U: adjacent_5p upward } 0 19 {C69R:U -> C68R:G: adjacent_3p downward } 0 20 {C69R:U -> C70R:U: adjacent_5p } 0 21 {C70R:U -> C69R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C4R:G 0 1 C5R:C 0 2 C6R:G 0 3 C7R:G 0 4 C66R:C 0 5 C67R:C 0 6 C68R:G 0 7 C69R:U 0 [Edges] 0 {C4R:G -> C5R:C: adjacent_5p upward } 0 1 {C5R:C -> C4R:G: adjacent_3p downward } 0 2 {C4R:G -> C69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {C69R:U -> C4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {C5R:C -> C6R:G: adjacent_5p upward } 0 5 {C6R:G -> C5R:C: adjacent_3p downward } 0 6 {C5R:C -> C68R:G: pairing antiparallel cis 130 Ww/Ww } 0 7 {C68R:G -> C5R:C: pairing antiparallel cis 130 Ww/Ww } 0 8 {C6R:G -> C7R:G: adjacent_5p upward } 0 9 {C7R:G -> C6R:G: adjacent_3p downward } 0 10 {C6R:G -> C67R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C67R:C -> C6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C6R:G -> C68R:G: outward } 0 13 {C68R:G -> C6R:G: outward } 0 14 {C7R:G -> C66R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C66R:C -> C7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C66R:C -> C67R:C: adjacent_5p upward } 0 17 {C67R:C -> C66R:C: adjacent_3p downward } 0 18 {C67R:C -> C68R:G: adjacent_5p } 0 19 {C68R:G -> C67R:C: adjacent_3p } 0 20 {C68R:G -> C69R:U: adjacent_5p upward } 0 21 {C69R:U -> C68R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C10R:G 0 1 C11R:U 0 2 C12R:U 0 3 C13R:C 0 4 C22R:G 0 5 C23R:A 0 6 C24R:A 0 7 C25R:U 0 [Edges] 0 {C10R:G -> C11R:U: adjacent_5p upward } 0 1 {C11R:U -> C10R:G: adjacent_3p downward } 0 2 {C10R:G -> C25R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {C25R:U -> C10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {C11R:U -> C12R:U: adjacent_5p } 0 5 {C12R:U -> C11R:U: adjacent_3p } 0 6 {C11R:U -> C24R:A: pairing antiparallel cis Ws/Ww } 0 7 {C24R:A -> C11R:U: pairing antiparallel cis Ww/Ws } 0 8 {C12R:U -> C13R:C: adjacent_5p upward } 0 9 {C13R:C -> C12R:U: adjacent_3p downward } 0 10 {C12R:U -> C23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C23R:A -> C12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C13R:C -> C22R:G: pairing antiparallel cis one_hbond 130 Ww/Ww } 0 13 {C22R:G -> C13R:C: pairing antiparallel cis one_hbond 130 Ww/Ww } 0 14 {C22R:G -> C23R:A: adjacent_5p upward } 0 15 {C23R:A -> C22R:G: adjacent_3p downward } 0 16 {C23R:A -> C24R:A: adjacent_5p upward } 0 17 {C24R:A -> C23R:A: adjacent_3p downward } 0 18 {C24R:A -> C25R:U: adjacent_5p upward } 0 19 {C25R:U -> C24R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C11R:U 0 1 C12R:U 0 2 C13R:C 0 3 C14R:A 0 4 C21R:A 0 5 C22R:G 0 6 C23R:A 0 7 C24R:A 0 [Edges] 0 {C11R:U -> C12R:U: adjacent_5p } 0 1 {C12R:U -> C11R:U: adjacent_3p } 0 2 {C11R:U -> C24R:A: pairing antiparallel cis Ws/Ww } 0 3 {C24R:A -> C11R:U: pairing antiparallel cis Ww/Ws } 0 4 {C12R:U -> C13R:C: adjacent_5p upward } 0 5 {C13R:C -> C12R:U: adjacent_3p downward } 0 6 {C12R:U -> C23R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C23R:A -> C12R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C13R:C -> C14R:A: adjacent_5p } 0 9 {C14R:A -> C13R:C: adjacent_3p } 0 10 {C13R:C -> C22R:G: pairing antiparallel cis one_hbond 130 Ww/Ww } 0 11 {C22R:G -> C13R:C: pairing antiparallel cis one_hbond 130 Ww/Ww } 0 12 {C14R:A -> C21R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 13 {C21R:A -> C14R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 14 {C14R:A -> C22R:G: outward } 0 15 {C22R:G -> C14R:A: outward } 0 16 {C21R:A -> C22R:G: adjacent_5p } 0 17 {C22R:G -> C21R:A: adjacent_3p } 0 18 {C22R:G -> C23R:A: adjacent_5p upward } 0 19 {C23R:A -> C22R:G: adjacent_3p downward } 0 20 {C23R:A -> C24R:A: adjacent_5p upward } 0 21 {C24R:A -> C23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C26R:A 0 1 C27R:C 0 2 C28R:C 0 3 C29R:U 0 4 C41R:A 0 5 C42R:G 0 6 C43R:G 0 7 C44R:G 0 [Edges] 0 {C26R:A -> C27R:C: adjacent_5p upward } 0 1 {C27R:C -> C26R:A: adjacent_3p downward } 0 2 {C26R:A -> C44R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {C44R:G -> C26R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {C27R:C -> C28R:C: adjacent_5p upward } 0 5 {C28R:C -> C27R:C: adjacent_3p downward } 0 6 {C27R:C -> C43R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C43R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C28R:C -> C29R:U: adjacent_5p } 0 9 {C29R:U -> C28R:C: adjacent_3p } 0 10 {C28R:C -> C42R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C42R:G -> C28R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C29R:U -> C41R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {C41R:A -> C29R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {C41R:A -> C42R:G: adjacent_5p upward } 0 15 {C42R:G -> C41R:A: adjacent_3p downward } 0 16 {C42R:G -> C43R:G: adjacent_5p upward } 0 17 {C43R:G -> C42R:G: adjacent_3p downward } 0 18 {C43R:G -> C44R:G: adjacent_5p upward } 0 19 {C44R:G -> C43R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C27R:C 0 1 C28R:C 0 2 C29R:U 0 3 C30R:G 0 4 C40R:C 0 5 C41R:A 0 6 C42R:G 0 7 C43R:G 0 [Edges] 0 {C27R:C -> C28R:C: adjacent_5p upward } 0 1 {C28R:C -> C27R:C: adjacent_3p downward } 0 2 {C27R:C -> C43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C43R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C28R:C -> C29R:U: adjacent_5p } 0 5 {C29R:U -> C28R:C: adjacent_3p } 0 6 {C28R:C -> C42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C42R:G -> C28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C29R:U -> C30R:G: adjacent_5p } 0 9 {C30R:G -> C29R:U: adjacent_3p } 0 10 {C29R:U -> C41R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C41R:A -> C29R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C30R:G -> C40R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C40R:C -> C30R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C30R:G -> C41R:A: outward } 0 15 {C41R:A -> C30R:G: outward } 0 16 {C40R:C -> C41R:A: adjacent_5p } 0 17 {C41R:A -> C40R:C: adjacent_3p } 0 18 {C41R:A -> C42R:G: adjacent_5p upward } 0 19 {C42R:G -> C41R:A: adjacent_3p downward } 0 20 {C42R:G -> C43R:G: adjacent_5p upward } 0 21 {C43R:G -> C42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C28R:C 0 1 C29R:U 0 2 C30R:G 0 3 C31R:C 0 4 C39R:G 0 5 C40R:C 0 6 C41R:A 0 7 C42R:G 0 [Edges] 0 {C28R:C -> C29R:U: adjacent_5p } 0 1 {C29R:U -> C28R:C: adjacent_3p } 0 2 {C28R:C -> C42R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C42R:G -> C28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C29R:U -> C30R:G: adjacent_5p } 0 5 {C30R:G -> C29R:U: adjacent_3p } 0 6 {C29R:U -> C41R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C41R:A -> C29R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C30R:G -> C31R:C: adjacent_5p upward } 0 9 {C31R:C -> C30R:G: adjacent_3p downward } 0 10 {C30R:G -> C40R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C40R:C -> C30R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C30R:G -> C41R:A: outward } 0 13 {C41R:A -> C30R:G: outward } 0 14 {C31R:C -> C39R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {C39R:G -> C31R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {C39R:G -> C40R:C: adjacent_5p upward } 0 17 {C40R:C -> C39R:G: adjacent_3p downward } 0 18 {C40R:C -> C41R:A: adjacent_5p } 0 19 {C41R:A -> C40R:C: adjacent_3p } 0 20 {C41R:A -> C42R:G: adjacent_5p upward } 0 21 {C42R:G -> C41R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C29R:U 0 1 C30R:G 0 2 C31R:C 0 3 C32R:C 0 4 C38R:C 0 5 C39R:G 0 6 C40R:C 0 7 C41R:A 0 [Edges] 0 {C29R:U -> C30R:G: adjacent_5p } 0 1 {C30R:G -> C29R:U: adjacent_3p } 0 2 {C29R:U -> C41R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C41R:A -> C29R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C30R:G -> C31R:C: adjacent_5p upward } 0 5 {C31R:C -> C30R:G: adjacent_3p downward } 0 6 {C30R:G -> C40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C40R:C -> C30R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C30R:G -> C41R:A: outward } 0 9 {C41R:A -> C30R:G: outward } 0 10 {C31R:C -> C32R:C: adjacent_5p upward } 0 11 {C32R:C -> C31R:C: adjacent_3p downward } 0 12 {C31R:C -> C39R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C39R:G -> C31R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C32R:C -> C38R:C: pairing antiparallel cis one_hbond 137 Ww/Wh } 0 15 {C38R:C -> C32R:C: pairing antiparallel cis one_hbond 137 Wh/Ww } 0 16 {C38R:C -> C39R:G: adjacent_5p upward } 0 17 {C39R:G -> C38R:C: adjacent_3p downward } 0 18 {C39R:G -> C40R:C: adjacent_5p upward } 0 19 {C40R:C -> C39R:G: adjacent_3p downward } 0 20 {C40R:C -> C41R:A: adjacent_5p } 0 21 {C41R:A -> C40R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C50R:C 0 1 C51R:G 0 2 C52R:G 0 3 C53R:G 0 4 C61R:C 0 5 C62R:C 0 6 C63R:C 0 7 C64R:G 0 [Edges] 0 {C50R:C -> C51R:G: adjacent_5p } 0 1 {C51R:G -> C50R:C: adjacent_3p } 0 2 {C50R:C -> C64R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C64R:G -> C50R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C51R:G -> C52R:G: adjacent_5p upward } 0 5 {C52R:G -> C51R:G: adjacent_3p downward } 0 6 {C51R:G -> C63R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C63R:C -> C51R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C51R:G -> C64R:G: outward } 0 9 {C64R:G -> C51R:G: outward } 0 10 {C52R:G -> C53R:G: adjacent_5p upward } 0 11 {C53R:G -> C52R:G: adjacent_3p downward } 0 12 {C52R:G -> C62R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C62R:C -> C52R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C53R:G -> C61R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C61R:C -> C53R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C53R:G -> C62R:C: outward } 0 17 {C62R:C -> C53R:G: outward } 0 18 {C61R:C -> C62R:C: adjacent_5p } 0 19 {C62R:C -> C61R:C: adjacent_3p } 0 20 {C62R:C -> C63R:C: adjacent_5p upward } 0 21 {C63R:C -> C62R:C: adjacent_3p downward } 0 22 {C63R:C -> C64R:G: adjacent_5p } 0 23 {C64R:G -> C63R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 D1R:G 0 1 D2R:G 0 2 D3R:A 0 3 D4R:G 0 4 D69R:U 0 5 D70R:U 0 6 D71R:C 0 7 D72R:C 0 [Edges] 0 {D1R:G -> D2R:G: adjacent_5p upward } 0 1 {D2R:G -> D1R:G: adjacent_3p downward } 0 2 {D1R:G -> D72R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 3 {D72R:C -> D1R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 4 {D2R:G -> D3R:A: adjacent_5p upward } 0 5 {D3R:A -> D2R:G: adjacent_3p downward } 0 6 {D2R:G -> D71R:C: pairing antiparallel cis one_hbond Ws/Ww } 0 7 {D71R:C -> D2R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 8 {D3R:A -> D4R:G: adjacent_5p upward } 0 9 {D4R:G -> D3R:A: adjacent_3p downward } 0 10 {D3R:A -> D70R:U: pairing antiparallel cis Ww/Ws } 0 11 {D70R:U -> D3R:A: pairing antiparallel cis Ws/Ww } 0 12 {D4R:G -> D69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {D69R:U -> D4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {D69R:U -> D70R:U: adjacent_5p upward } 0 15 {D70R:U -> D69R:U: adjacent_3p downward } 0 16 {D70R:U -> D71R:C: adjacent_5p } 0 17 {D71R:C -> D70R:U: adjacent_3p } 0 18 {D71R:C -> D72R:C: adjacent_5p upward } 0 19 {D72R:C -> D71R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D2R:G 0 1 D3R:A 0 2 D4R:G 0 3 D5R:C 0 4 D68R:G 0 5 D69R:U 0 6 D70R:U 0 7 D71R:C 0 [Edges] 0 {D2R:G -> D3R:A: adjacent_5p upward } 0 1 {D3R:A -> D2R:G: adjacent_3p downward } 0 2 {D2R:G -> D71R:C: pairing antiparallel cis one_hbond Ws/Ww } 0 3 {D71R:C -> D2R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 4 {D3R:A -> D4R:G: adjacent_5p upward } 0 5 {D4R:G -> D3R:A: adjacent_3p downward } 0 6 {D3R:A -> D70R:U: pairing antiparallel cis Ww/Ws } 0 7 {D70R:U -> D3R:A: pairing antiparallel cis Ws/Ww } 0 8 {D4R:G -> D5R:C: adjacent_5p upward } 0 9 {D5R:C -> D4R:G: adjacent_3p downward } 0 10 {D4R:G -> D69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {D69R:U -> D4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {D5R:C -> D68R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D68R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D68R:G -> D69R:U: adjacent_5p upward } 0 15 {D69R:U -> D68R:G: adjacent_3p downward } 0 16 {D69R:U -> D70R:U: adjacent_5p upward } 0 17 {D70R:U -> D69R:U: adjacent_3p downward } 0 18 {D70R:U -> D71R:C: adjacent_5p } 0 19 {D71R:C -> D70R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D3R:A 0 1 D4R:G 0 2 D5R:C 0 3 D6R:G 0 4 D67R:C 0 5 D68R:G 0 6 D69R:U 0 7 D70R:U 0 [Edges] 0 {D3R:A -> D4R:G: adjacent_5p upward } 0 1 {D4R:G -> D3R:A: adjacent_3p downward } 0 2 {D3R:A -> D70R:U: pairing antiparallel cis Ww/Ws } 0 3 {D70R:U -> D3R:A: pairing antiparallel cis Ws/Ww } 0 4 {D4R:G -> D5R:C: adjacent_5p upward } 0 5 {D5R:C -> D4R:G: adjacent_3p downward } 0 6 {D4R:G -> D69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {D69R:U -> D4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {D5R:C -> D6R:G: adjacent_5p } 0 9 {D6R:G -> D5R:C: adjacent_3p } 0 10 {D5R:C -> D68R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D68R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D6R:G -> D67R:C: pairing antiparallel cis Ww/Ww } 0 13 {D67R:C -> D6R:G: pairing antiparallel cis Ww/Ww } 0 14 {D6R:G -> D68R:G: outward } 0 15 {D68R:G -> D6R:G: outward } 0 16 {D67R:C -> D68R:G: adjacent_5p } 0 17 {D68R:G -> D67R:C: adjacent_3p } 0 18 {D68R:G -> D69R:U: adjacent_5p upward } 0 19 {D69R:U -> D68R:G: adjacent_3p downward } 0 20 {D69R:U -> D70R:U: adjacent_5p upward } 0 21 {D70R:U -> D69R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D4R:G 0 1 D5R:C 0 2 D6R:G 0 3 D7R:G 0 4 D66R:C 0 5 D67R:C 0 6 D68R:G 0 7 D69R:U 0 [Edges] 0 {D4R:G -> D5R:C: adjacent_5p upward } 0 1 {D5R:C -> D4R:G: adjacent_3p downward } 0 2 {D4R:G -> D69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {D69R:U -> D4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {D5R:C -> D6R:G: adjacent_5p } 0 5 {D6R:G -> D5R:C: adjacent_3p } 0 6 {D5R:C -> D68R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D68R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D6R:G -> D7R:G: adjacent_5p upward } 0 9 {D7R:G -> D6R:G: adjacent_3p downward } 0 10 {D6R:G -> D67R:C: pairing antiparallel cis Ww/Ww } 0 11 {D67R:C -> D6R:G: pairing antiparallel cis Ww/Ww } 0 12 {D6R:G -> D68R:G: outward } 0 13 {D68R:G -> D6R:G: outward } 0 14 {D7R:G -> D66R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D66R:C -> D7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D66R:C -> D67R:C: adjacent_5p upward } 0 17 {D67R:C -> D66R:C: adjacent_3p downward } 0 18 {D67R:C -> D68R:G: adjacent_5p } 0 19 {D68R:G -> D67R:C: adjacent_3p } 0 20 {D68R:G -> D69R:U: adjacent_5p upward } 0 21 {D69R:U -> D68R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D10R:G 0 1 D11R:U 0 2 D12R:U 0 3 D13R:C 0 4 D22R:G 0 5 D23R:A 0 6 D24R:A 0 7 D25R:U 0 [Edges] 0 {D10R:G -> D11R:U: adjacent_5p upward } 0 1 {D11R:U -> D10R:G: adjacent_3p downward } 0 2 {D10R:G -> D25R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {D25R:U -> D10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {D11R:U -> D12R:U: adjacent_5p upward } 0 5 {D12R:U -> D11R:U: adjacent_3p downward } 0 6 {D11R:U -> D24R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D24R:A -> D11R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D12R:U -> D13R:C: adjacent_5p upward } 0 9 {D13R:C -> D12R:U: adjacent_3p downward } 0 10 {D12R:U -> D23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D23R:A -> D12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D13R:C -> D22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D22R:G -> D13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D22R:G -> D23R:A: adjacent_5p upward } 0 15 {D23R:A -> D22R:G: adjacent_3p downward } 0 16 {D23R:A -> D24R:A: adjacent_5p upward } 0 17 {D24R:A -> D23R:A: adjacent_3p downward } 0 18 {D24R:A -> D25R:U: adjacent_5p upward } 0 19 {D25R:U -> D24R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D11R:U 0 1 D12R:U 0 2 D13R:C 0 3 D14R:A 0 4 D21R:A 0 5 D22R:G 0 6 D23R:A 0 7 D24R:A 0 [Edges] 0 {D11R:U -> D12R:U: adjacent_5p upward } 0 1 {D12R:U -> D11R:U: adjacent_3p downward } 0 2 {D11R:U -> D24R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D24R:A -> D11R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D12R:U -> D13R:C: adjacent_5p upward } 0 5 {D13R:C -> D12R:U: adjacent_3p downward } 0 6 {D12R:U -> D23R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D23R:A -> D12R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D13R:C -> D14R:A: adjacent_5p } 0 9 {D14R:A -> D13R:C: adjacent_3p } 0 10 {D13R:C -> D22R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D22R:G -> D13R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D14R:A -> D21R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 13 {D21R:A -> D14R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 14 {D14R:A -> D22R:G: outward } 0 15 {D22R:G -> D14R:A: outward } 0 16 {D21R:A -> D22R:G: adjacent_5p } 0 17 {D22R:G -> D21R:A: adjacent_3p } 0 18 {D22R:G -> D23R:A: adjacent_5p upward } 0 19 {D23R:A -> D22R:G: adjacent_3p downward } 0 20 {D23R:A -> D24R:A: adjacent_5p upward } 0 21 {D24R:A -> D23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D26R:A 0 1 D27R:C 0 2 D28R:C 0 3 D29R:U 0 4 D41R:A 0 5 D42R:G 0 6 D43R:G 0 7 D44R:G 0 [Edges] 0 {D26R:A -> D27R:C: adjacent_5p upward } 0 1 {D27R:C -> D26R:A: adjacent_3p downward } 0 2 {D26R:A -> D44R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {D44R:G -> D26R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {D27R:C -> D28R:C: adjacent_5p upward } 0 5 {D28R:C -> D27R:C: adjacent_3p downward } 0 6 {D27R:C -> D43R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D43R:G -> D27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D28R:C -> D29R:U: adjacent_5p } 0 9 {D29R:U -> D28R:C: adjacent_3p } 0 10 {D28R:C -> D42R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D42R:G -> D28R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D29R:U -> D41R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {D41R:A -> D29R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {D41R:A -> D42R:G: adjacent_5p upward } 0 15 {D42R:G -> D41R:A: adjacent_3p downward } 0 16 {D42R:G -> D43R:G: adjacent_5p upward } 0 17 {D43R:G -> D42R:G: adjacent_3p downward } 0 18 {D43R:G -> D44R:G: adjacent_5p upward } 0 19 {D44R:G -> D43R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D27R:C 0 1 D28R:C 0 2 D29R:U 0 3 D30R:G 0 4 D40R:C 0 5 D41R:A 0 6 D42R:G 0 7 D43R:G 0 [Edges] 0 {D27R:C -> D28R:C: adjacent_5p upward } 0 1 {D28R:C -> D27R:C: adjacent_3p downward } 0 2 {D27R:C -> D43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D43R:G -> D27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D28R:C -> D29R:U: adjacent_5p } 0 5 {D29R:U -> D28R:C: adjacent_3p } 0 6 {D28R:C -> D42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D42R:G -> D28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D29R:U -> D30R:G: adjacent_5p } 0 9 {D30R:G -> D29R:U: adjacent_3p } 0 10 {D29R:U -> D41R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D41R:A -> D29R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D30R:G -> D40R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D40R:C -> D30R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D30R:G -> D41R:A: outward } 0 15 {D41R:A -> D30R:G: outward } 0 16 {D40R:C -> D41R:A: adjacent_5p upward } 0 17 {D41R:A -> D40R:C: adjacent_3p downward } 0 18 {D41R:A -> D42R:G: adjacent_5p upward } 0 19 {D42R:G -> D41R:A: adjacent_3p downward } 0 20 {D42R:G -> D43R:G: adjacent_5p upward } 0 21 {D43R:G -> D42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D28R:C 0 1 D29R:U 0 2 D30R:G 0 3 D31R:C 0 4 D39R:G 0 5 D40R:C 0 6 D41R:A 0 7 D42R:G 0 [Edges] 0 {D28R:C -> D29R:U: adjacent_5p } 0 1 {D29R:U -> D28R:C: adjacent_3p } 0 2 {D28R:C -> D42R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D42R:G -> D28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D29R:U -> D30R:G: adjacent_5p } 0 5 {D30R:G -> D29R:U: adjacent_3p } 0 6 {D29R:U -> D41R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D41R:A -> D29R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D30R:G -> D31R:C: adjacent_5p upward } 0 9 {D31R:C -> D30R:G: adjacent_3p downward } 0 10 {D30R:G -> D40R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D40R:C -> D30R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D30R:G -> D41R:A: outward } 0 13 {D41R:A -> D30R:G: outward } 0 14 {D31R:C -> D39R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D39R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D39R:G -> D40R:C: adjacent_5p upward } 0 17 {D40R:C -> D39R:G: adjacent_3p downward } 0 18 {D40R:C -> D41R:A: adjacent_5p upward } 0 19 {D41R:A -> D40R:C: adjacent_3p downward } 0 20 {D41R:A -> D42R:G: adjacent_5p upward } 0 21 {D42R:G -> D41R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D29R:U 0 1 D30R:G 0 2 D31R:C 0 3 D32R:C 0 4 D38R:C 0 5 D39R:G 0 6 D40R:C 0 7 D41R:A 0 [Edges] 0 {D29R:U -> D30R:G: adjacent_5p } 0 1 {D30R:G -> D29R:U: adjacent_3p } 0 2 {D29R:U -> D41R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D41R:A -> D29R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D30R:G -> D31R:C: adjacent_5p upward } 0 5 {D31R:C -> D30R:G: adjacent_3p downward } 0 6 {D30R:G -> D40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D40R:C -> D30R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D30R:G -> D41R:A: outward } 0 9 {D41R:A -> D30R:G: outward } 0 10 {D31R:C -> D32R:C: adjacent_5p upward } 0 11 {D32R:C -> D31R:C: adjacent_3p downward } 0 12 {D31R:C -> D39R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D39R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D32R:C -> D38R:C: pairing antiparallel cis one_hbond 137 Ws/Wh } 0 15 {D38R:C -> D32R:C: pairing antiparallel cis one_hbond 137 Wh/Ws } 0 16 {D38R:C -> D39R:G: adjacent_5p upward } 0 17 {D39R:G -> D38R:C: adjacent_3p downward } 0 18 {D39R:G -> D40R:C: adjacent_5p upward } 0 19 {D40R:C -> D39R:G: adjacent_3p downward } 0 20 {D40R:C -> D41R:A: adjacent_5p upward } 0 21 {D41R:A -> D40R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D50R:C 0 1 D51R:G 0 2 D52R:G 0 3 D53R:G 0 4 D61R:C 0 5 D62R:C 0 6 D63R:C 0 7 D64R:G 0 [Edges] 0 {D50R:C -> D51R:G: adjacent_5p } 0 1 {D51R:G -> D50R:C: adjacent_3p } 0 2 {D50R:C -> D64R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D64R:G -> D50R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D51R:G -> D52R:G: adjacent_5p upward } 0 5 {D52R:G -> D51R:G: adjacent_3p downward } 0 6 {D51R:G -> D63R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D63R:C -> D51R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D51R:G -> D64R:G: outward } 0 9 {D64R:G -> D51R:G: outward } 0 10 {D52R:G -> D53R:G: adjacent_5p upward } 0 11 {D53R:G -> D52R:G: adjacent_3p downward } 0 12 {D52R:G -> D62R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D62R:C -> D52R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D53R:G -> D61R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D61R:C -> D53R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D61R:C -> D62R:C: adjacent_5p } 0 17 {D62R:C -> D61R:C: adjacent_3p } 0 18 {D62R:C -> D63R:C: adjacent_5p upward } 0 19 {D63R:C -> D62R:C: adjacent_3p downward } 0 20 {D63R:C -> D64R:G: adjacent_5p upward } 0 21 {D64R:G -> D63R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:C 0 2 A3R:G 0 3 A4R:G 0 4 A69R:U 0 5 A70R:C 0 6 A71R:G 0 7 A72R:C 0 [Edges] 0 {A1R:G -> A2R:C: adjacent_5p upward } 0 1 {A2R:C -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A72R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A72R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:C -> A3R:G: adjacent_5p upward } 0 5 {A3R:G -> A2R:C: adjacent_3p downward } 0 6 {A2R:C -> A71R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A71R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:G -> A4R:G: adjacent_5p upward } 0 9 {A4R:G -> A3R:G: adjacent_3p downward } 0 10 {A3R:G -> A70R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A70R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A3R:G -> A71R:G: outward } 0 13 {A71R:G -> A3R:G: outward } 0 14 {A4R:G -> A69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A69R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A69R:U -> A70R:C: adjacent_5p } 0 17 {A70R:C -> A69R:U: adjacent_3p } 0 18 {A70R:C -> A71R:G: adjacent_5p upward } 0 19 {A71R:G -> A70R:C: adjacent_3p downward } 0 20 {A71R:G -> A72R:C: adjacent_5p upward } 0 21 {A72R:C -> A71R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2R:C 0 1 A3R:G 0 2 A4R:G 0 3 A5R:A 0 4 A68R:U 0 5 A69R:U 0 6 A70R:C 0 7 A71R:G 0 [Edges] 0 {A2R:C -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:C: adjacent_3p downward } 0 2 {A2R:C -> A71R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A71R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A70R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A70R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:G -> A71R:G: outward } 0 9 {A71R:G -> A3R:G: outward } 0 10 {A4R:G -> A5R:A: adjacent_5p upward } 0 11 {A5R:A -> A4R:G: adjacent_3p downward } 0 12 {A4R:G -> A69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A69R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A5R:A -> A68R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A68R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A68R:U -> A69R:U: adjacent_5p upward } 0 17 {A69R:U -> A68R:U: adjacent_3p downward } 0 18 {A69R:U -> A70R:C: adjacent_5p } 0 19 {A70R:C -> A69R:U: adjacent_3p } 0 20 {A70R:C -> A71R:G: adjacent_5p upward } 0 21 {A71R:G -> A70R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:G 0 2 A5R:A 0 3 A6R:U 0 4 A67R:A 0 5 A68R:U 0 6 A69R:U 0 7 A70R:C 0 [Edges] 0 {A3R:G -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A70R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A70R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A69R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A5R:A -> A6R:U: adjacent_5p upward } 0 9 {A6R:U -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> A68R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A68R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:U -> A67R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A67R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A67R:A -> A68R:U: adjacent_5p upward } 0 15 {A68R:U -> A67R:A: adjacent_3p downward } 0 16 {A68R:U -> A69R:U: adjacent_5p upward } 0 17 {A69R:U -> A68R:U: adjacent_3p downward } 0 18 {A69R:U -> A70R:C: adjacent_5p } 0 19 {A70R:C -> A69R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:U 0 3 A7R:U 0 4 A66R:A 0 5 A67R:A 0 6 A68R:U 0 7 A69R:U 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A69R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A5R:A -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> A68R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A68R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:U -> A7R:U: adjacent_5p upward } 0 9 {A7R:U -> A6R:U: adjacent_3p downward } 0 10 {A6R:U -> A67R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A67R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:U -> A66R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A66R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A66R:A -> A67R:A: adjacent_5p upward } 0 15 {A67R:A -> A66R:A: adjacent_3p downward } 0 16 {A67R:A -> A68R:U: adjacent_5p upward } 0 17 {A68R:U -> A67R:A: adjacent_3p downward } 0 18 {A68R:U -> A69R:U: adjacent_5p upward } 0 19 {A69R:U -> A68R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A50R:U 0 1 A51R:G 0 2 A52R:U 0 3 A53R:G 0 4 A61R:C 0 5 A62R:A 0 6 A63R:C 0 7 A64R:A 0 [Edges] 0 {A50R:U -> A51R:G: adjacent_5p upward } 0 1 {A51R:G -> A50R:U: adjacent_3p downward } 0 2 {A50R:U -> A64R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A64R:A -> A50R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A51R:G -> A52R:U: adjacent_5p upward } 0 5 {A52R:U -> A51R:G: adjacent_3p downward } 0 6 {A51R:G -> A63R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A63R:C -> A51R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A51R:G -> A64R:A: outward } 0 9 {A64R:A -> A51R:G: outward } 0 10 {A52R:U -> A53R:G: adjacent_5p } 0 11 {A53R:G -> A52R:U: adjacent_3p } 0 12 {A52R:U -> A62R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A62R:A -> A52R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A53R:G -> A61R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A61R:C -> A53R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A53R:G -> A62R:A: outward } 0 17 {A62R:A -> A53R:G: outward } 0 18 {A61R:C -> A62R:A: adjacent_5p } 0 19 {A62R:A -> A61R:C: adjacent_3p } 0 20 {A62R:A -> A63R:C: adjacent_5p upward } 0 21 {A63R:C -> A62R:A: adjacent_3p downward } 0 22 {A63R:C -> A64R:A: adjacent_5p upward } 0 23 {A64R:A -> A63R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A2R:A 0 1 A3R:G 0 2 A4R:U 0 3 A5R:G 0 4 B4R:U 0 5 B5R:G 0 6 B6R:C 0 7 B7R:U 0 [Edges] 0 {A2R:A -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:A: adjacent_3p downward } 0 2 {A2R:A -> B7R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B7R:U -> A2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B6R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:U -> A5R:G: adjacent_5p } 0 9 {A5R:G -> A4R:U: adjacent_3p } 0 10 {A4R:U -> B5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B5R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A5R:G -> B4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B4R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A5R:G -> B5R:G: outward } 0 15 {B5R:G -> A5R:G: outward } 0 16 {B4R:U -> B5R:G: adjacent_5p } 0 17 {B5R:G -> B4R:U: adjacent_3p } 0 18 {B5R:G -> B6R:C: adjacent_5p upward } 0 19 {B6R:C -> B5R:G: adjacent_3p downward } 0 20 {B6R:C -> B7R:U: adjacent_5p } 0 21 {B7R:U -> B6R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:U 0 2 A5R:G 0 3 A6R:C 0 4 B3R:G 0 5 B4R:U 0 6 B5R:G 0 7 B6R:C 0 [Edges] 0 {A3R:G -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B6R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:U -> A5R:G: adjacent_5p } 0 5 {A5R:G -> A4R:U: adjacent_3p } 0 6 {A4R:U -> B5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B5R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A5R:G -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> B4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B4R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A5R:G -> B5R:G: outward } 0 13 {B5R:G -> A5R:G: outward } 0 14 {A6R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B3R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B3R:G -> B4R:U: adjacent_5p upward } 0 17 {B4R:U -> B3R:G: adjacent_3p downward } 0 18 {B4R:U -> B5R:G: adjacent_5p } 0 19 {B5R:G -> B4R:U: adjacent_3p } 0 20 {B5R:G -> B6R:C: adjacent_5p upward } 0 21 {B6R:C -> B5R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:G 0 2 A6R:C 0 3 A7R:U 0 4 B2R:A 0 5 B3R:G 0 6 B4R:U 0 7 B5R:G 0 [Edges] 0 {A4R:U -> A5R:G: adjacent_5p } 0 1 {A5R:G -> A4R:U: adjacent_3p } 0 2 {A4R:U -> B5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B5R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A5R:G -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> B4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B4R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A5R:G -> B5R:G: outward } 0 9 {B5R:G -> A5R:G: outward } 0 10 {A6R:C -> A7R:U: adjacent_5p upward } 0 11 {A7R:U -> A6R:C: adjacent_3p downward } 0 12 {A6R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B3R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:U -> B2R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B2R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B2R:A -> B3R:G: adjacent_5p upward } 0 17 {B3R:G -> B2R:A: adjacent_3p downward } 0 18 {B3R:G -> B4R:U: adjacent_5p upward } 0 19 {B4R:U -> B3R:G: adjacent_3p downward } 0 20 {B4R:U -> B5R:G: adjacent_5p } 0 21 {B5R:G -> B4R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:U 0 4 B4R:G 0 5 B5R:U 0 6 B6R:G 0 7 B7R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B7R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B6R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> B5R:U: pairing antiparallel cis 84 Ww/Bs } 0 11 {B5R:U -> A4R:G: pairing antiparallel cis 84 Bs/Ww } 0 12 {A4R:G -> B6R:G: outward } 0 13 {B6R:G -> A4R:G: outward } 0 14 {A5R:U -> B4R:G: pairing antiparallel cis 84 Bs/Ww } 0 15 {B4R:G -> A5R:U: pairing antiparallel cis 84 Ww/Bs } 0 16 {B4R:G -> B5R:U: adjacent_5p upward } 0 17 {B5R:U -> B4R:G: adjacent_3p downward } 0 18 {B5R:U -> B6R:G: adjacent_5p } 0 19 {B6R:G -> B5R:U: adjacent_3p } 0 20 {B6R:G -> B7R:C: adjacent_5p upward } 0 21 {B7R:C -> B6R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:U 0 3 A6R:G 0 4 B3R:C 0 5 B4R:G 0 6 B5R:U 0 7 B6R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B6R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B5R:U: pairing antiparallel cis 84 Ww/Bs } 0 7 {B5R:U -> A4R:G: pairing antiparallel cis 84 Bs/Ww } 0 8 {A4R:G -> B6R:G: outward } 0 9 {B6R:G -> A4R:G: outward } 0 10 {A5R:U -> A6R:G: adjacent_5p } 0 11 {A6R:G -> A5R:U: adjacent_3p } 0 12 {A5R:U -> B4R:G: pairing antiparallel cis 84 Bs/Ww } 0 13 {B4R:G -> A5R:U: pairing antiparallel cis 84 Ww/Bs } 0 14 {A6R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B3R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A6R:G -> B4R:G: outward } 0 17 {B4R:G -> A6R:G: outward } 0 18 {B3R:C -> B4R:G: adjacent_5p upward } 0 19 {B4R:G -> B3R:C: adjacent_3p downward } 0 20 {B4R:G -> B5R:U: adjacent_5p upward } 0 21 {B5R:U -> B4R:G: adjacent_3p downward } 0 22 {B5R:U -> B6R:G: adjacent_5p } 0 23 {B6R:G -> B5R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:U 0 2 A6R:G 0 3 A7R:C 0 4 B2R:G 0 5 B3R:C 0 6 B4R:G 0 7 B5R:U 0 [Edges] 0 {A4R:G -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B5R:U: pairing antiparallel cis 84 Ww/Bs } 0 3 {B5R:U -> A4R:G: pairing antiparallel cis 84 Bs/Ww } 0 4 {A5R:U -> A6R:G: adjacent_5p } 0 5 {A6R:G -> A5R:U: adjacent_3p } 0 6 {A5R:U -> B4R:G: pairing antiparallel cis 84 Bs/Ww } 0 7 {B4R:G -> A5R:U: pairing antiparallel cis 84 Ww/Bs } 0 8 {A6R:G -> A7R:C: adjacent_5p upward } 0 9 {A7R:C -> A6R:G: adjacent_3p downward } 0 10 {A6R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B3R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:G -> B4R:G: outward } 0 13 {B4R:G -> A6R:G: outward } 0 14 {A7R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B2R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B2R:G -> B3R:C: adjacent_5p upward } 0 17 {B3R:C -> B2R:G: adjacent_3p downward } 0 18 {B3R:C -> B4R:G: adjacent_5p upward } 0 19 {B4R:G -> B3R:C: adjacent_3p downward } 0 20 {B4R:G -> B5R:U: adjacent_5p upward } 0 21 {B5R:U -> B4R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 B2R:G 0 1 B3R:A 0 2 B4R:C 0 3 B5R:A 0 4 B26R:U 0 5 B27R:G 0 6 B28R:U 0 7 B29R:C 0 [Edges] 0 {B2R:G -> B3R:A: adjacent_5p upward } 0 1 {B3R:A -> B2R:G: adjacent_3p downward } 0 2 {B2R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B29R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B3R:A -> B4R:C: adjacent_5p upward } 0 5 {B4R:C -> B3R:A: adjacent_3p downward } 0 6 {B3R:A -> B28R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B28R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B4R:C -> B5R:A: adjacent_5p } 0 9 {B5R:A -> B4R:C: adjacent_3p } 0 10 {B4R:C -> B27R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B27R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B5R:A -> B26R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 13 {B26R:U -> B5R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 14 {B5R:A -> B27R:G: outward } 0 15 {B27R:G -> B5R:A: outward } 0 16 {B26R:U -> B27R:G: adjacent_5p upward } 0 17 {B27R:G -> B26R:U: adjacent_3p downward } 0 18 {B27R:G -> B28R:U: adjacent_5p upward } 0 19 {B28R:U -> B27R:G: adjacent_3p downward } 0 20 {B28R:U -> B29R:C: adjacent_5p upward } 0 21 {B29R:C -> B28R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B3R:A 0 1 B4R:C 0 2 B5R:A 0 3 B6R:G 0 4 B25R:C 0 5 B26R:U 0 6 B27R:G 0 7 B28R:U 0 [Edges] 0 {B3R:A -> B4R:C: adjacent_5p upward } 0 1 {B4R:C -> B3R:A: adjacent_3p downward } 0 2 {B3R:A -> B28R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B28R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B4R:C -> B5R:A: adjacent_5p } 0 5 {B5R:A -> B4R:C: adjacent_3p } 0 6 {B4R:C -> B27R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B27R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B5R:A -> B6R:G: adjacent_5p upward } 0 9 {B6R:G -> B5R:A: adjacent_3p downward } 0 10 {B5R:A -> B26R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {B26R:U -> B5R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {B5R:A -> B27R:G: outward } 0 13 {B27R:G -> B5R:A: outward } 0 14 {B6R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B25R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B25R:C -> B26R:U: adjacent_5p upward } 0 17 {B26R:U -> B25R:C: adjacent_3p downward } 0 18 {B26R:U -> B27R:G: adjacent_5p upward } 0 19 {B27R:G -> B26R:U: adjacent_3p downward } 0 20 {B27R:G -> B28R:U: adjacent_5p upward } 0 21 {B28R:U -> B27R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B4R:C 0 1 B5R:A 0 2 B6R:G 0 3 B7R:C 0 4 B24R:G 0 5 B25R:C 0 6 B26R:U 0 7 B27R:G 0 [Edges] 0 {B4R:C -> B5R:A: adjacent_5p } 0 1 {B5R:A -> B4R:C: adjacent_3p } 0 2 {B4R:C -> B27R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B27R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B5R:A -> B6R:G: adjacent_5p upward } 0 5 {B6R:G -> B5R:A: adjacent_3p downward } 0 6 {B5R:A -> B26R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {B26R:U -> B5R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {B5R:A -> B27R:G: outward } 0 9 {B27R:G -> B5R:A: outward } 0 10 {B6R:G -> B7R:C: adjacent_5p upward } 0 11 {B7R:C -> B6R:G: adjacent_3p downward } 0 12 {B6R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B25R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B7R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B24R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B24R:G -> B25R:C: adjacent_5p upward } 0 17 {B25R:C -> B24R:G: adjacent_3p downward } 0 18 {B25R:C -> B26R:U: adjacent_5p upward } 0 19 {B26R:U -> B25R:C: adjacent_3p downward } 0 20 {B26R:U -> B27R:G: adjacent_5p upward } 0 21 {B27R:G -> B26R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B5R:A 0 1 B6R:G 0 2 B7R:C 0 3 B8R:U 0 4 B23R:A 0 5 B24R:G 0 6 B25R:C 0 7 B26R:U 0 [Edges] 0 {B5R:A -> B6R:G: adjacent_5p upward } 0 1 {B6R:G -> B5R:A: adjacent_3p downward } 0 2 {B5R:A -> B26R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {B26R:U -> B5R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {B6R:G -> B7R:C: adjacent_5p upward } 0 5 {B7R:C -> B6R:G: adjacent_3p downward } 0 6 {B6R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B25R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B7R:C -> B8R:U: adjacent_5p } 0 9 {B8R:U -> B7R:C: adjacent_3p } 0 10 {B7R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B24R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B8R:U -> B23R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B23R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B23R:A -> B24R:G: adjacent_5p upward } 0 15 {B24R:G -> B23R:A: adjacent_3p downward } 0 16 {B24R:G -> B25R:C: adjacent_5p upward } 0 17 {B25R:C -> B24R:G: adjacent_3p downward } 0 18 {B25R:C -> B26R:U: adjacent_5p upward } 0 19 {B26R:U -> B25R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B6R:G 0 1 B7R:C 0 2 B8R:U 0 3 B9R:G 0 4 B22R:C 0 5 B23R:A 0 6 B24R:G 0 7 B25R:C 0 [Edges] 0 {B6R:G -> B7R:C: adjacent_5p upward } 0 1 {B7R:C -> B6R:G: adjacent_3p downward } 0 2 {B6R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B25R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B7R:C -> B8R:U: adjacent_5p } 0 5 {B8R:U -> B7R:C: adjacent_3p } 0 6 {B7R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B24R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B8R:U -> B9R:G: adjacent_5p upward } 0 9 {B9R:G -> B8R:U: adjacent_3p downward } 0 10 {B8R:U -> B23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B23R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B9R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B22R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B9R:G -> B23R:A: outward } 0 15 {B23R:A -> B9R:G: outward } 0 16 {B22R:C -> B23R:A: adjacent_5p } 0 17 {B23R:A -> B22R:C: adjacent_3p } 0 18 {B23R:A -> B24R:G: adjacent_5p upward } 0 19 {B24R:G -> B23R:A: adjacent_3p downward } 0 20 {B24R:G -> B25R:C: adjacent_5p upward } 0 21 {B25R:C -> B24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B7R:C 0 1 B8R:U 0 2 B9R:G 0 3 B10R:U 0 4 B21R:A 0 5 B22R:C 0 6 B23R:A 0 7 B24R:G 0 [Edges] 0 {B7R:C -> B8R:U: adjacent_5p } 0 1 {B8R:U -> B7R:C: adjacent_3p } 0 2 {B7R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B24R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B8R:U -> B9R:G: adjacent_5p upward } 0 5 {B9R:G -> B8R:U: adjacent_3p downward } 0 6 {B8R:U -> B23R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B23R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B9R:G -> B10R:U: adjacent_5p upward } 0 9 {B10R:U -> B9R:G: adjacent_3p downward } 0 10 {B9R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B22R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B9R:G -> B23R:A: outward } 0 13 {B23R:A -> B9R:G: outward } 0 14 {B10R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B21R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B21R:A -> B22R:C: adjacent_5p } 0 17 {B22R:C -> B21R:A: adjacent_3p } 0 18 {B22R:C -> B23R:A: adjacent_5p } 0 19 {B23R:A -> B22R:C: adjacent_3p } 0 20 {B23R:A -> B24R:G: adjacent_5p upward } 0 21 {B24R:G -> B23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B8R:U 0 1 B9R:G 0 2 B10R:U 0 3 B11R:C 0 4 B20R:G 0 5 B21R:A 0 6 B22R:C 0 7 B23R:A 0 [Edges] 0 {B8R:U -> B9R:G: adjacent_5p upward } 0 1 {B9R:G -> B8R:U: adjacent_3p downward } 0 2 {B8R:U -> B23R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B23R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B9R:G -> B10R:U: adjacent_5p upward } 0 5 {B10R:U -> B9R:G: adjacent_3p downward } 0 6 {B9R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B22R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B9R:G -> B23R:A: outward } 0 9 {B23R:A -> B9R:G: outward } 0 10 {B10R:U -> B11R:C: adjacent_5p } 0 11 {B11R:C -> B10R:U: adjacent_3p } 0 12 {B10R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B21R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B11R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B20R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B11R:C -> B21R:A: outward } 0 17 {B21R:A -> B11R:C: outward } 0 18 {B20R:G -> B21R:A: adjacent_5p upward } 0 19 {B21R:A -> B20R:G: adjacent_3p downward } 0 20 {B21R:A -> B22R:C: adjacent_5p } 0 21 {B22R:C -> B21R:A: adjacent_3p } 0 22 {B22R:C -> B23R:A: adjacent_5p } 0 23 {B23R:A -> B22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 B9R:G 0 1 B10R:U 0 2 B11R:C 0 3 B12R:C 0 4 B19R:G 0 5 B20R:G 0 6 B21R:A 0 7 B22R:C 0 [Edges] 0 {B9R:G -> B10R:U: adjacent_5p upward } 0 1 {B10R:U -> B9R:G: adjacent_3p downward } 0 2 {B9R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B22R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B10R:U -> B11R:C: adjacent_5p } 0 5 {B11R:C -> B10R:U: adjacent_3p } 0 6 {B10R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B21R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B11R:C -> B12R:C: adjacent_5p } 0 9 {B12R:C -> B11R:C: adjacent_3p } 0 10 {B11R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B20R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B11R:C -> B21R:A: outward } 0 13 {B21R:A -> B11R:C: outward } 0 14 {B12R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B19R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B12R:C -> B20R:G: outward } 0 17 {B20R:G -> B12R:C: outward } 0 18 {B19R:G -> B20R:G: adjacent_5p upward } 0 19 {B20R:G -> B19R:G: adjacent_3p downward } 0 20 {B20R:G -> B21R:A: adjacent_5p upward } 0 21 {B21R:A -> B20R:G: adjacent_3p downward } 0 22 {B21R:A -> B22R:C: adjacent_5p } 0 23 {B22R:C -> B21R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 B10R:U 0 1 B11R:C 0 2 B12R:C 0 3 B13R:C 0 4 B18R:G 0 5 B19R:G 0 6 B20R:G 0 7 B21R:A 0 [Edges] 0 {B10R:U -> B11R:C: adjacent_5p } 0 1 {B11R:C -> B10R:U: adjacent_3p } 0 2 {B10R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B21R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B11R:C -> B12R:C: adjacent_5p } 0 5 {B12R:C -> B11R:C: adjacent_3p } 0 6 {B11R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B20R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B11R:C -> B21R:A: outward } 0 9 {B21R:A -> B11R:C: outward } 0 10 {B12R:C -> B13R:C: adjacent_5p } 0 11 {B13R:C -> B12R:C: adjacent_3p } 0 12 {B12R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B19R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B12R:C -> B20R:G: outward } 0 15 {B20R:G -> B12R:C: outward } 0 16 {B13R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 17 {B18R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 18 {B18R:G -> B19R:G: adjacent_5p upward } 0 19 {B19R:G -> B18R:G: adjacent_3p downward } 0 20 {B19R:G -> B20R:G: adjacent_5p upward } 0 21 {B20R:G -> B19R:G: adjacent_3p downward } 0 22 {B20R:G -> B21R:A: adjacent_5p upward } 0 23 {B21R:A -> B20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 B11R:C 0 1 B12R:C 0 2 B13R:C 0 3 B14R:U 0 4 B17R:G 0 5 B18R:G 0 6 B19R:G 0 7 B20R:G 0 [Edges] 0 {B11R:C -> B12R:C: adjacent_5p } 0 1 {B12R:C -> B11R:C: adjacent_3p } 0 2 {B11R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B20R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B12R:C -> B13R:C: adjacent_5p } 0 5 {B13R:C -> B12R:C: adjacent_3p } 0 6 {B12R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B19R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B12R:C -> B20R:G: outward } 0 9 {B20R:G -> B12R:C: outward } 0 10 {B13R:C -> B14R:U: adjacent_5p upward } 0 11 {B14R:U -> B13R:C: adjacent_3p downward } 0 12 {B13R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B18R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B14R:U -> B17R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {B17R:G -> B14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {B17R:G -> B18R:G: adjacent_5p upward } 0 17 {B18R:G -> B17R:G: adjacent_3p downward } 0 18 {B18R:G -> B19R:G: adjacent_5p upward } 0 19 {B19R:G -> B18R:G: adjacent_3p downward } 0 20 {B19R:G -> B20R:G: adjacent_5p upward } 0 21 {B20R:G -> B19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A1R:U 0 1 A2R:G 0 2 A3R:C 0 3 A4R:C 0 4 B16R:G 0 5 B17R:G 0 6 B18R:C 0 7 B19R:A 0 [Edges] 0 {A1R:U -> A2R:G: adjacent_5p } 0 1 {A2R:G -> A1R:U: adjacent_3p } 0 2 {A1R:U -> B19R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B19R:A -> A1R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A2R:G -> A3R:C: adjacent_5p upward } 0 5 {A3R:C -> A2R:G: adjacent_3p downward } 0 6 {A2R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B18R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2R:G -> B19R:A: outward } 0 9 {B19R:A -> A2R:G: outward } 0 10 {A3R:C -> A4R:C: adjacent_5p upward } 0 11 {A4R:C -> A3R:C: adjacent_3p downward } 0 12 {A3R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B17R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A4R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B16R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B16R:G -> B17R:G: adjacent_5p upward } 0 17 {B17R:G -> B16R:G: adjacent_3p downward } 0 18 {B17R:G -> B18R:C: adjacent_5p upward } 0 19 {B18R:C -> B17R:G: adjacent_3p downward } 0 20 {B18R:C -> B19R:A: adjacent_5p upward } 0 21 {B19R:A -> B18R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:C 0 3 A5R:U 0 4 B15R:A 0 5 B16R:G 0 6 B17R:G 0 7 B18R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B18R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B17R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:U: adjacent_5p } 0 9 {A5R:U -> A4R:C: adjacent_3p } 0 10 {A4R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B16R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:U -> B15R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B15R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B15R:A -> B16R:G: adjacent_5p upward } 0 15 {B16R:G -> B15R:A: adjacent_3p downward } 0 16 {B16R:G -> B17R:G: adjacent_5p upward } 0 17 {B17R:G -> B16R:G: adjacent_3p downward } 0 18 {B17R:G -> B18R:C: adjacent_5p upward } 0 19 {B18R:C -> B17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:C 0 2 A5R:U 0 3 A6R:G 0 4 B14R:C 0 5 B15R:A 0 6 B16R:G 0 7 B17R:G 0 [Edges] 0 {A3R:C -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B17R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:U: adjacent_5p } 0 5 {A5R:U -> A4R:C: adjacent_3p } 0 6 {A4R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B16R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> A6R:G: adjacent_5p upward } 0 9 {A6R:G -> A5R:U: adjacent_3p downward } 0 10 {A5R:U -> B15R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B15R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:G -> B14R:C: pairing antiparallel cis Ww/Ww } 0 13 {B14R:C -> A6R:G: pairing antiparallel cis Ww/Ww } 0 14 {B14R:C -> B15R:A: adjacent_5p } 0 15 {B15R:A -> B14R:C: adjacent_3p } 0 16 {B15R:A -> B16R:G: adjacent_5p upward } 0 17 {B16R:G -> B15R:A: adjacent_3p downward } 0 18 {B16R:G -> B17R:G: adjacent_5p upward } 0 19 {B17R:G -> B16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:U 0 2 A6R:G 0 3 A7R:G 0 4 B13R:C 0 5 B14R:C 0 6 B15R:A 0 7 B16R:G 0 [Edges] 0 {A4R:C -> A5R:U: adjacent_5p } 0 1 {A5R:U -> A4R:C: adjacent_3p } 0 2 {A4R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B16R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> B15R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B15R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:G -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:G: adjacent_3p downward } 0 10 {A6R:G -> B14R:C: pairing antiparallel cis Ww/Ww } 0 11 {B14R:C -> A6R:G: pairing antiparallel cis Ww/Ww } 0 12 {A7R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B13R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B13R:C -> B14R:C: adjacent_5p upward } 0 15 {B14R:C -> B13R:C: adjacent_3p downward } 0 16 {B14R:C -> B15R:A: adjacent_5p } 0 17 {B15R:A -> B14R:C: adjacent_3p } 0 18 {B15R:A -> B16R:G: adjacent_5p upward } 0 19 {B16R:G -> B15R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:G 0 2 A7R:G 0 3 A8R:C 0 4 B12R:G 0 5 B13R:C 0 6 B14R:C 0 7 B15R:A 0 [Edges] 0 {A5R:U -> A6R:G: adjacent_5p upward } 0 1 {A6R:G -> A5R:U: adjacent_3p downward } 0 2 {A5R:U -> B15R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B15R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:G -> A7R:G: adjacent_5p upward } 0 5 {A7R:G -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> B14R:C: pairing antiparallel cis Ww/Ww } 0 7 {B14R:C -> A6R:G: pairing antiparallel cis Ww/Ww } 0 8 {A7R:G -> A8R:C: adjacent_5p upward } 0 9 {A8R:C -> A7R:G: adjacent_3p downward } 0 10 {A7R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B13R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B12R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B12R:G -> B13R:C: adjacent_5p upward } 0 15 {B13R:C -> B12R:G: adjacent_3p downward } 0 16 {B13R:C -> B14R:C: adjacent_5p upward } 0 17 {B14R:C -> B13R:C: adjacent_3p downward } 0 18 {B14R:C -> B15R:A: adjacent_5p } 0 19 {B15R:A -> B14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:G 0 2 A8R:C 0 3 A9R:G 0 4 B11R:U 0 5 B12R:G 0 6 B13R:C 0 7 B14R:C 0 [Edges] 0 {A6R:G -> A7R:G: adjacent_5p upward } 0 1 {A7R:G -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> B14R:C: pairing antiparallel cis Ww/Ww } 0 3 {B14R:C -> A6R:G: pairing antiparallel cis Ww/Ww } 0 4 {A7R:G -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:G: adjacent_3p downward } 0 6 {A7R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B13R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:C -> A9R:G: adjacent_5p upward } 0 9 {A9R:G -> A8R:C: adjacent_3p downward } 0 10 {A8R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B12R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:G -> B11R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B11R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {B11R:U -> B12R:G: adjacent_5p } 0 15 {B12R:G -> B11R:U: adjacent_3p } 0 16 {B12R:G -> B13R:C: adjacent_5p upward } 0 17 {B13R:C -> B12R:G: adjacent_3p downward } 0 18 {B13R:C -> B14R:C: adjacent_5p upward } 0 19 {B14R:C -> B13R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:C 0 2 A9R:G 0 3 A10R:G 0 4 B10R:C 0 5 B11R:U 0 6 B12R:G 0 7 B13R:C 0 [Edges] 0 {A7R:G -> A8R:C: adjacent_5p upward } 0 1 {A8R:C -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B13R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:C -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:C: adjacent_3p downward } 0 6 {A8R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> B11R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B11R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A10R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B10R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B10R:C -> B11R:U: adjacent_5p upward } 0 15 {B11R:U -> B10R:C: adjacent_3p downward } 0 16 {B11R:U -> B12R:G: adjacent_5p } 0 17 {B12R:G -> B11R:U: adjacent_3p } 0 18 {B12R:G -> B13R:C: adjacent_5p upward } 0 19 {B13R:C -> B12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:G 0 3 A5R:C 0 4 A9R:G 0 5 A10R:C 0 6 A11R:A 0 7 A12R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A12R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p } 0 5 {A4R:G -> A3R:U: adjacent_3p } 0 6 {A3R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A11R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A10R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A11R:A: outward } 0 13 {A11R:A -> A4R:G: outward } 0 14 {A5R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A9R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A9R:G -> A10R:C: adjacent_5p } 0 17 {A10R:C -> A9R:G: adjacent_3p } 0 18 {A10R:C -> A11R:A: adjacent_5p upward } 0 19 {A11R:A -> A10R:C: adjacent_3p downward } 0 20 {A11R:A -> A12R:C: adjacent_5p upward } 0 21 {A12R:C -> A11R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:C 0 3 A6R:A 0 4 A8R:A 0 5 A9R:G 0 6 A10R:C 0 7 A11R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p } 0 1 {A4R:G -> A3R:U: adjacent_3p } 0 2 {A3R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A11R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A10R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A11R:A: outward } 0 9 {A11R:A -> A4R:G: outward } 0 10 {A5R:C -> A6R:A: adjacent_5p upward } 0 11 {A6R:A -> A5R:C: adjacent_3p downward } 0 12 {A5R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A9R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:A -> A8R:A: pairing antiparallel trans one_hbond 40 Ss/Wh } 0 15 {A8R:A -> A6R:A: pairing antiparallel trans one_hbond 40 Wh/Ss } 0 16 {A8R:A -> A9R:G: adjacent_5p upward } 0 17 {A9R:G -> A8R:A: adjacent_3p downward } 0 18 {A9R:G -> A10R:C: adjacent_5p } 0 19 {A10R:C -> A9R:G: adjacent_3p } 0 20 {A10R:C -> A11R:A: adjacent_5p upward } 0 21 {A11R:A -> A10R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 B903R:G 0 1 B904R:G 0 2 B905R:G 0 3 B906R:U 0 4 B967R:A 0 5 B968R:C 0 6 B969R:C 0 7 B970R:C 0 [Edges] 0 {B903R:G -> B904R:G: adjacent_5p upward } 0 1 {B904R:G -> B903R:G: adjacent_3p downward } 0 2 {B903R:G -> B970R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B970R:C -> B903R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B904R:G -> B905R:G: adjacent_5p upward } 0 5 {B905R:G -> B904R:G: adjacent_3p downward } 0 6 {B904R:G -> B969R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B969R:C -> B904R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B905R:G -> B906R:U: adjacent_5p upward } 0 9 {B906R:U -> B905R:G: adjacent_3p downward } 0 10 {B905R:G -> B968R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B968R:C -> B905R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B906R:U -> B967R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B967R:A -> B906R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B967R:A -> B968R:C: adjacent_5p upward } 0 15 {B968R:C -> B967R:A: adjacent_3p downward } 0 16 {B968R:C -> B969R:C: adjacent_5p upward } 0 17 {B969R:C -> B968R:C: adjacent_3p downward } 0 18 {B969R:C -> B970R:C: adjacent_5p } 0 19 {B970R:C -> B969R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B904R:G 0 1 B905R:G 0 2 B906R:U 0 3 B907R:A 0 4 B966R:U 0 5 B967R:A 0 6 B968R:C 0 7 B969R:C 0 [Edges] 0 {B904R:G -> B905R:G: adjacent_5p upward } 0 1 {B905R:G -> B904R:G: adjacent_3p downward } 0 2 {B904R:G -> B969R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B969R:C -> B904R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B905R:G -> B906R:U: adjacent_5p upward } 0 5 {B906R:U -> B905R:G: adjacent_3p downward } 0 6 {B905R:G -> B968R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B968R:C -> B905R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B906R:U -> B907R:A: adjacent_5p upward } 0 9 {B907R:A -> B906R:U: adjacent_3p downward } 0 10 {B906R:U -> B967R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B967R:A -> B906R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B907R:A -> B966R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B966R:U -> B907R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B907R:A -> B967R:A: outward } 0 15 {B967R:A -> B907R:A: outward } 0 16 {B966R:U -> B967R:A: adjacent_5p } 0 17 {B967R:A -> B966R:U: adjacent_3p } 0 18 {B967R:A -> B968R:C: adjacent_5p upward } 0 19 {B968R:C -> B967R:A: adjacent_3p downward } 0 20 {B968R:C -> B969R:C: adjacent_5p upward } 0 21 {B969R:C -> B968R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B910R:G 0 1 B911R:C 0 2 B912R:C 0 3 B913R:A 0 4 B922R:A 0 5 B923R:G 0 6 B924R:G 0 7 B925R:C 0 [Edges] 0 {B910R:G -> B911R:C: adjacent_5p upward } 0 1 {B911R:C -> B910R:G: adjacent_3p downward } 0 2 {B910R:G -> B925R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B925R:C -> B910R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B911R:C -> B912R:C: adjacent_5p upward } 0 5 {B912R:C -> B911R:C: adjacent_3p downward } 0 6 {B911R:C -> B924R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B924R:G -> B911R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B912R:C -> B913R:A: adjacent_5p upward } 0 9 {B913R:A -> B912R:C: adjacent_3p downward } 0 10 {B912R:C -> B923R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B923R:G -> B912R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B913R:A -> B922R:A: pairing antiparallel trans one_hbond 41 Ss/Hw } 0 13 {B922R:A -> B913R:A: pairing antiparallel trans one_hbond 41 Hw/Ss } 0 14 {B922R:A -> B923R:G: adjacent_5p upward } 0 15 {B923R:G -> B922R:A: adjacent_3p downward } 0 16 {B923R:G -> B924R:G: adjacent_5p upward } 0 17 {B924R:G -> B923R:G: adjacent_3p downward } 0 18 {B924R:G -> B925R:C: adjacent_5p upward } 0 19 {B925R:C -> B924R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B911R:C 0 1 B912R:C 0 2 B913R:A 0 3 B914R:A 0 4 B921R:A 0 5 B922R:A 0 6 B923R:G 0 7 B924R:G 0 [Edges] 0 {B911R:C -> B912R:C: adjacent_5p upward } 0 1 {B912R:C -> B911R:C: adjacent_3p downward } 0 2 {B911R:C -> B924R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B924R:G -> B911R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B912R:C -> B913R:A: adjacent_5p upward } 0 5 {B913R:A -> B912R:C: adjacent_3p downward } 0 6 {B912R:C -> B923R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B923R:G -> B912R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B913R:A -> B914R:A: adjacent_5p } 0 9 {B914R:A -> B913R:A: adjacent_3p } 0 10 {B913R:A -> B922R:A: pairing antiparallel trans one_hbond 41 Ss/Hw } 0 11 {B922R:A -> B913R:A: pairing antiparallel trans one_hbond 41 Hw/Ss } 0 12 {B914R:A -> B921R:A: pairing antiparallel trans one_hbond 40 Wh/Ss } 0 13 {B921R:A -> B914R:A: pairing antiparallel trans one_hbond 40 Ss/Wh } 0 14 {B914R:A -> B922R:A: outward } 0 15 {B922R:A -> B914R:A: outward } 0 16 {B921R:A -> B922R:A: adjacent_5p } 0 17 {B922R:A -> B921R:A: adjacent_3p } 0 18 {B922R:A -> B923R:G: adjacent_5p upward } 0 19 {B923R:G -> B922R:A: adjacent_3p downward } 0 20 {B923R:G -> B924R:G: adjacent_5p upward } 0 21 {B924R:G -> B923R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B926R:A 0 1 B927R:C 0 2 B928R:C 0 3 B929R:G 0 4 B941R:C 0 5 B942R:G 0 6 B943R:G 0 7 B944R:C 0 [Edges] 0 {B926R:A -> B927R:C: adjacent_5p upward } 0 1 {B927R:C -> B926R:A: adjacent_3p downward } 0 2 {B926R:A -> B944R:C: pairing antiparallel cis one_hbond 78 Wh/Ww } 0 3 {B944R:C -> B926R:A: pairing antiparallel cis one_hbond 78 Ww/Wh } 0 4 {B927R:C -> B928R:C: adjacent_5p upward } 0 5 {B928R:C -> B927R:C: adjacent_3p downward } 0 6 {B927R:C -> B943R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B943R:G -> B927R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B928R:C -> B929R:G: adjacent_5p } 0 9 {B929R:G -> B928R:C: adjacent_3p } 0 10 {B928R:C -> B942R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B942R:G -> B928R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B929R:G -> B941R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B941R:C -> B929R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B929R:G -> B942R:G: outward } 0 15 {B942R:G -> B929R:G: outward } 0 16 {B941R:C -> B942R:G: adjacent_5p } 0 17 {B942R:G -> B941R:C: adjacent_3p } 0 18 {B942R:G -> B943R:G: adjacent_5p upward } 0 19 {B943R:G -> B942R:G: adjacent_3p downward } 0 20 {B943R:G -> B944R:C: adjacent_5p upward } 0 21 {B944R:C -> B943R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B927R:C 0 1 B928R:C 0 2 B929R:G 0 3 B930R:G 0 4 B940R:C 0 5 B941R:C 0 6 B942R:G 0 7 B943R:G 0 [Edges] 0 {B927R:C -> B928R:C: adjacent_5p upward } 0 1 {B928R:C -> B927R:C: adjacent_3p downward } 0 2 {B927R:C -> B943R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B943R:G -> B927R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B928R:C -> B929R:G: adjacent_5p } 0 5 {B929R:G -> B928R:C: adjacent_3p } 0 6 {B928R:C -> B942R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B942R:G -> B928R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B929R:G -> B930R:G: adjacent_5p upward } 0 9 {B930R:G -> B929R:G: adjacent_3p downward } 0 10 {B929R:G -> B941R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B941R:C -> B929R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B929R:G -> B942R:G: outward } 0 13 {B942R:G -> B929R:G: outward } 0 14 {B930R:G -> B940R:C: pairing antiparallel cis 127 Ww/Ws } 0 15 {B940R:C -> B930R:G: pairing antiparallel cis 127 Ws/Ww } 0 16 {B940R:C -> B941R:C: adjacent_5p } 0 17 {B941R:C -> B940R:C: adjacent_3p } 0 18 {B941R:C -> B942R:G: adjacent_5p } 0 19 {B942R:G -> B941R:C: adjacent_3p } 0 20 {B942R:G -> B943R:G: adjacent_5p upward } 0 21 {B943R:G -> B942R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B928R:C 0 1 B929R:G 0 2 B930R:G 0 3 B931R:A 0 4 B939R:U 0 5 B940R:C 0 6 B941R:C 0 7 B942R:G 0 [Edges] 0 {B928R:C -> B929R:G: adjacent_5p } 0 1 {B929R:G -> B928R:C: adjacent_3p } 0 2 {B928R:C -> B942R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B942R:G -> B928R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B929R:G -> B930R:G: adjacent_5p upward } 0 5 {B930R:G -> B929R:G: adjacent_3p downward } 0 6 {B929R:G -> B941R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B941R:C -> B929R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B929R:G -> B942R:G: outward } 0 9 {B942R:G -> B929R:G: outward } 0 10 {B930R:G -> B931R:A: adjacent_5p upward } 0 11 {B931R:A -> B930R:G: adjacent_3p downward } 0 12 {B930R:G -> B940R:C: pairing antiparallel cis 127 Ww/Ws } 0 13 {B940R:C -> B930R:G: pairing antiparallel cis 127 Ws/Ww } 0 14 {B931R:A -> B939R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B939R:U -> B931R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B939R:U -> B940R:C: adjacent_5p upward } 0 17 {B940R:C -> B939R:U: adjacent_3p downward } 0 18 {B940R:C -> B941R:C: adjacent_5p } 0 19 {B941R:C -> B940R:C: adjacent_3p } 0 20 {B941R:C -> B942R:G: adjacent_5p } 0 21 {B942R:G -> B941R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B930R:G 0 1 B931R:A 0 2 B932R:U 0 3 B933R:U 0 4 B937R:A 0 5 B938R:U 0 6 B939R:U 0 7 B940R:C 0 [Edges] 0 {B930R:G -> B931R:A: adjacent_5p upward } 0 1 {B931R:A -> B930R:G: adjacent_3p downward } 0 2 {B930R:G -> B940R:C: pairing antiparallel cis 127 Ww/Ws } 0 3 {B940R:C -> B930R:G: pairing antiparallel cis 127 Ws/Ww } 0 4 {B931R:A -> B932R:U: adjacent_5p upward } 0 5 {B932R:U -> B931R:A: adjacent_3p downward } 0 6 {B931R:A -> B939R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B939R:U -> B931R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B932R:U -> B933R:U: adjacent_5p upward } 0 9 {B933R:U -> B932R:U: adjacent_3p downward } 0 10 {B933R:U -> B937R:A: pairing antiparallel trans one_hbond 45 Ss/Hw } 0 11 {B937R:A -> B933R:U: pairing antiparallel trans one_hbond 45 Hw/Ss } 0 12 {B937R:A -> B938R:U: adjacent_5p upward } 0 13 {B938R:U -> B937R:A: adjacent_3p downward } 0 14 {B938R:U -> B939R:U: adjacent_5p upward } 0 15 {B939R:U -> B938R:U: adjacent_3p downward } 0 16 {B939R:U -> B940R:C: adjacent_5p upward } 0 17 {B940R:C -> B939R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 B949R:C 0 1 B950R:G 0 2 B951R:A 0 3 B952R:G 0 4 B962R:C 0 5 B963R:U 0 6 B964R:C 0 7 B965R:G 0 [Edges] 0 {B949R:C -> B950R:G: adjacent_5p } 0 1 {B950R:G -> B949R:C: adjacent_3p } 0 2 {B949R:C -> B965R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B965R:G -> B949R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B950R:G -> B951R:A: adjacent_5p upward } 0 5 {B951R:A -> B950R:G: adjacent_3p downward } 0 6 {B950R:G -> B964R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B964R:C -> B950R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B950R:G -> B965R:G: outward } 0 9 {B965R:G -> B950R:G: outward } 0 10 {B951R:A -> B952R:G: adjacent_5p upward } 0 11 {B952R:G -> B951R:A: adjacent_3p downward } 0 12 {B951R:A -> B963R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B963R:U -> B951R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B952R:G -> B962R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B962R:C -> B952R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B962R:C -> B963R:U: adjacent_5p } 0 17 {B963R:U -> B962R:C: adjacent_3p } 0 18 {B963R:U -> B964R:C: adjacent_5p upward } 0 19 {B964R:C -> B963R:U: adjacent_3p downward } 0 20 {B964R:C -> B965R:G: adjacent_5p upward } 0 21 {B965R:G -> B964R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B950R:G 0 1 B951R:A 0 2 B952R:G 0 3 B953R:G 0 4 B961R:C 0 5 B962R:C 0 6 B963R:U 0 7 B964R:C 0 [Edges] 0 {B950R:G -> B951R:A: adjacent_5p upward } 0 1 {B951R:A -> B950R:G: adjacent_3p downward } 0 2 {B950R:G -> B964R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B964R:C -> B950R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B951R:A -> B952R:G: adjacent_5p upward } 0 5 {B952R:G -> B951R:A: adjacent_3p downward } 0 6 {B951R:A -> B963R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B963R:U -> B951R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B952R:G -> B953R:G: adjacent_5p upward } 0 9 {B953R:G -> B952R:G: adjacent_3p downward } 0 10 {B952R:G -> B962R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B962R:C -> B952R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B953R:G -> B961R:C: pairing antiparallel cis Ww/Ww } 0 13 {B961R:C -> B953R:G: pairing antiparallel cis Ww/Ww } 0 14 {B961R:C -> B962R:C: adjacent_5p } 0 15 {B962R:C -> B961R:C: adjacent_3p } 0 16 {B962R:C -> B963R:U: adjacent_5p } 0 17 {B963R:U -> B962R:C: adjacent_3p } 0 18 {B963R:U -> B964R:C: adjacent_5p upward } 0 19 {B964R:C -> B963R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B903R:G 0 1 B904R:G 0 2 B905R:G 0 3 B906R:U 0 4 B967R:A 0 5 B968R:C 0 6 B969R:C 0 7 B970R:C 0 [Edges] 0 {B903R:G -> B904R:G: adjacent_5p upward } 0 1 {B904R:G -> B903R:G: adjacent_3p downward } 0 2 {B903R:G -> B970R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B970R:C -> B903R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B904R:G -> B905R:G: adjacent_5p upward } 0 5 {B905R:G -> B904R:G: adjacent_3p downward } 0 6 {B904R:G -> B969R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B969R:C -> B904R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B905R:G -> B906R:U: adjacent_5p upward } 0 9 {B906R:U -> B905R:G: adjacent_3p downward } 0 10 {B905R:G -> B968R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B968R:C -> B905R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B906R:U -> B967R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B967R:A -> B906R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B967R:A -> B968R:C: adjacent_5p upward } 0 15 {B968R:C -> B967R:A: adjacent_3p downward } 0 16 {B968R:C -> B969R:C: adjacent_5p upward } 0 17 {B969R:C -> B968R:C: adjacent_3p downward } 0 18 {B969R:C -> B970R:C: adjacent_5p } 0 19 {B970R:C -> B969R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B904R:G 0 1 B905R:G 0 2 B906R:U 0 3 B907R:A 0 4 B966R:U 0 5 B967R:A 0 6 B968R:C 0 7 B969R:C 0 [Edges] 0 {B904R:G -> B905R:G: adjacent_5p upward } 0 1 {B905R:G -> B904R:G: adjacent_3p downward } 0 2 {B904R:G -> B969R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B969R:C -> B904R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B905R:G -> B906R:U: adjacent_5p upward } 0 5 {B906R:U -> B905R:G: adjacent_3p downward } 0 6 {B905R:G -> B968R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B968R:C -> B905R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B906R:U -> B907R:A: adjacent_5p upward } 0 9 {B907R:A -> B906R:U: adjacent_3p downward } 0 10 {B906R:U -> B967R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B967R:A -> B906R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B907R:A -> B966R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B966R:U -> B907R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B907R:A -> B967R:A: outward } 0 15 {B967R:A -> B907R:A: outward } 0 16 {B966R:U -> B967R:A: adjacent_5p } 0 17 {B967R:A -> B966R:U: adjacent_3p } 0 18 {B967R:A -> B968R:C: adjacent_5p upward } 0 19 {B968R:C -> B967R:A: adjacent_3p downward } 0 20 {B968R:C -> B969R:C: adjacent_5p upward } 0 21 {B969R:C -> B968R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B910R:G 0 1 B911R:C 0 2 B912R:C 0 3 B913R:A 0 4 B922R:A 0 5 B923R:G 0 6 B924R:G 0 7 B925R:C 0 [Edges] 0 {B910R:G -> B911R:C: adjacent_5p upward } 0 1 {B911R:C -> B910R:G: adjacent_3p downward } 0 2 {B910R:G -> B925R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B925R:C -> B910R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B911R:C -> B912R:C: adjacent_5p upward } 0 5 {B912R:C -> B911R:C: adjacent_3p downward } 0 6 {B911R:C -> B924R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B924R:G -> B911R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B912R:C -> B913R:A: adjacent_5p upward } 0 9 {B913R:A -> B912R:C: adjacent_3p downward } 0 10 {B912R:C -> B923R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B923R:G -> B912R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B913R:A -> B922R:A: pairing antiparallel trans one_hbond 41 Ss/Hw } 0 13 {B922R:A -> B913R:A: pairing antiparallel trans one_hbond 41 Hw/Ss } 0 14 {B922R:A -> B923R:G: adjacent_5p upward } 0 15 {B923R:G -> B922R:A: adjacent_3p downward } 0 16 {B923R:G -> B924R:G: adjacent_5p upward } 0 17 {B924R:G -> B923R:G: adjacent_3p downward } 0 18 {B924R:G -> B925R:C: adjacent_5p upward } 0 19 {B925R:C -> B924R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B911R:C 0 1 B912R:C 0 2 B913R:A 0 3 B914R:A 0 4 B921R:A 0 5 B922R:A 0 6 B923R:G 0 7 B924R:G 0 [Edges] 0 {B911R:C -> B912R:C: adjacent_5p upward } 0 1 {B912R:C -> B911R:C: adjacent_3p downward } 0 2 {B911R:C -> B924R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B924R:G -> B911R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B912R:C -> B913R:A: adjacent_5p upward } 0 5 {B913R:A -> B912R:C: adjacent_3p downward } 0 6 {B912R:C -> B923R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B923R:G -> B912R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B913R:A -> B914R:A: adjacent_5p } 0 9 {B914R:A -> B913R:A: adjacent_3p } 0 10 {B913R:A -> B922R:A: pairing antiparallel trans one_hbond 41 Ss/Hw } 0 11 {B922R:A -> B913R:A: pairing antiparallel trans one_hbond 41 Hw/Ss } 0 12 {B914R:A -> B921R:A: pairing antiparallel trans one_hbond 40 Wh/Ss } 0 13 {B921R:A -> B914R:A: pairing antiparallel trans one_hbond 40 Ss/Wh } 0 14 {B914R:A -> B922R:A: outward } 0 15 {B922R:A -> B914R:A: outward } 0 16 {B921R:A -> B922R:A: adjacent_5p } 0 17 {B922R:A -> B921R:A: adjacent_3p } 0 18 {B922R:A -> B923R:G: adjacent_5p upward } 0 19 {B923R:G -> B922R:A: adjacent_3p downward } 0 20 {B923R:G -> B924R:G: adjacent_5p upward } 0 21 {B924R:G -> B923R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B926R:A 0 1 B927R:C 0 2 B928R:C 0 3 B929R:G 0 4 B941R:C 0 5 B942R:G 0 6 B943R:G 0 7 B944R:A 0 [Edges] 0 {B926R:A -> B927R:C: adjacent_5p upward } 0 1 {B927R:C -> B926R:A: adjacent_3p downward } 0 2 {B926R:A -> B944R:A: pairing antiparallel cis 37 Ww/Ww } 0 3 {B944R:A -> B926R:A: pairing antiparallel cis 37 Ww/Ww } 0 4 {B927R:C -> B928R:C: adjacent_5p upward } 0 5 {B928R:C -> B927R:C: adjacent_3p downward } 0 6 {B927R:C -> B943R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B943R:G -> B927R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B928R:C -> B929R:G: adjacent_5p upward } 0 9 {B929R:G -> B928R:C: adjacent_3p downward } 0 10 {B928R:C -> B942R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B942R:G -> B928R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B928R:C -> B943R:G: outward } 0 13 {B943R:G -> B928R:C: outward } 0 14 {B929R:G -> B941R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B941R:C -> B929R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B929R:G -> B942R:G: outward } 0 17 {B942R:G -> B929R:G: outward } 0 18 {B941R:C -> B942R:G: adjacent_5p } 0 19 {B942R:G -> B941R:C: adjacent_3p } 0 20 {B942R:G -> B943R:G: adjacent_5p upward } 0 21 {B943R:G -> B942R:G: adjacent_3p downward } 0 22 {B943R:G -> B944R:A: adjacent_5p upward } 0 23 {B944R:A -> B943R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 B927R:C 0 1 B928R:C 0 2 B929R:G 0 3 B930R:G 0 4 B940R:C 0 5 B941R:C 0 6 B942R:G 0 7 B943R:G 0 [Edges] 0 {B927R:C -> B928R:C: adjacent_5p upward } 0 1 {B928R:C -> B927R:C: adjacent_3p downward } 0 2 {B927R:C -> B943R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B943R:G -> B927R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B928R:C -> B929R:G: adjacent_5p upward } 0 5 {B929R:G -> B928R:C: adjacent_3p downward } 0 6 {B928R:C -> B942R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B942R:G -> B928R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B928R:C -> B943R:G: outward } 0 9 {B943R:G -> B928R:C: outward } 0 10 {B929R:G -> B930R:G: adjacent_5p upward } 0 11 {B930R:G -> B929R:G: adjacent_3p downward } 0 12 {B929R:G -> B941R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B941R:C -> B929R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B929R:G -> B942R:G: outward } 0 15 {B942R:G -> B929R:G: outward } 0 16 {B930R:G -> B940R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 17 {B940R:C -> B930R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 18 {B940R:C -> B941R:C: adjacent_5p } 0 19 {B941R:C -> B940R:C: adjacent_3p } 0 20 {B941R:C -> B942R:G: adjacent_5p } 0 21 {B942R:G -> B941R:C: adjacent_3p } 0 22 {B942R:G -> B943R:G: adjacent_5p upward } 0 23 {B943R:G -> B942R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 B928R:C 0 1 B929R:G 0 2 B930R:G 0 3 B931R:A 0 4 B939R:U 0 5 B940R:C 0 6 B941R:C 0 7 B942R:G 0 [Edges] 0 {B928R:C -> B929R:G: adjacent_5p upward } 0 1 {B929R:G -> B928R:C: adjacent_3p downward } 0 2 {B928R:C -> B942R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B942R:G -> B928R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B929R:G -> B930R:G: adjacent_5p upward } 0 5 {B930R:G -> B929R:G: adjacent_3p downward } 0 6 {B929R:G -> B941R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B941R:C -> B929R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B929R:G -> B942R:G: outward } 0 9 {B942R:G -> B929R:G: outward } 0 10 {B930R:G -> B931R:A: adjacent_5p upward } 0 11 {B931R:A -> B930R:G: adjacent_3p downward } 0 12 {B930R:G -> B940R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 13 {B940R:C -> B930R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 14 {B931R:A -> B939R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B939R:U -> B931R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B939R:U -> B940R:C: adjacent_5p } 0 17 {B940R:C -> B939R:U: adjacent_3p } 0 18 {B940R:C -> B941R:C: adjacent_5p } 0 19 {B941R:C -> B940R:C: adjacent_3p } 0 20 {B941R:C -> B942R:G: adjacent_5p } 0 21 {B942R:G -> B941R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B930R:G 0 1 B931R:A 0 2 B932R:U 0 3 B933R:U 0 4 B937R:A 0 5 B938R:U 0 6 B939R:U 0 7 B940R:C 0 [Edges] 0 {B930R:G -> B931R:A: adjacent_5p upward } 0 1 {B931R:A -> B930R:G: adjacent_3p downward } 0 2 {B930R:G -> B940R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 3 {B940R:C -> B930R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 4 {B931R:A -> B932R:U: adjacent_5p upward } 0 5 {B932R:U -> B931R:A: adjacent_3p downward } 0 6 {B931R:A -> B939R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B939R:U -> B931R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B932R:U -> B933R:U: adjacent_5p } 0 9 {B933R:U -> B932R:U: adjacent_3p } 0 10 {B933R:U -> B937R:A: pairing antiparallel trans one_hbond 45 Ss/Hw } 0 11 {B937R:A -> B933R:U: pairing antiparallel trans one_hbond 45 Hw/Ss } 0 12 {B937R:A -> B938R:U: adjacent_5p upward } 0 13 {B938R:U -> B937R:A: adjacent_3p downward } 0 14 {B938R:U -> B939R:U: adjacent_5p upward } 0 15 {B939R:U -> B938R:U: adjacent_3p downward } 0 16 {B939R:U -> B940R:C: adjacent_5p } 0 17 {B940R:C -> B939R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 B949R:C 0 1 B950R:G 0 2 B951R:A 0 3 B952R:G 0 4 B962R:C 0 5 B963R:U 0 6 B964R:C 0 7 B965R:G 0 [Edges] 0 {B949R:C -> B950R:G: adjacent_5p } 0 1 {B950R:G -> B949R:C: adjacent_3p } 0 2 {B949R:C -> B965R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B965R:G -> B949R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B950R:G -> B951R:A: adjacent_5p upward } 0 5 {B951R:A -> B950R:G: adjacent_3p downward } 0 6 {B950R:G -> B964R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B964R:C -> B950R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B950R:G -> B965R:G: outward } 0 9 {B965R:G -> B950R:G: outward } 0 10 {B951R:A -> B952R:G: adjacent_5p upward } 0 11 {B952R:G -> B951R:A: adjacent_3p downward } 0 12 {B951R:A -> B963R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B963R:U -> B951R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B952R:G -> B962R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B962R:C -> B952R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B962R:C -> B963R:U: adjacent_5p } 0 17 {B963R:U -> B962R:C: adjacent_3p } 0 18 {B963R:U -> B964R:C: adjacent_5p upward } 0 19 {B964R:C -> B963R:U: adjacent_3p downward } 0 20 {B964R:C -> B965R:G: adjacent_5p upward } 0 21 {B965R:G -> B964R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B950R:G 0 1 B951R:A 0 2 B952R:G 0 3 B953R:G 0 4 B961R:C 0 5 B962R:C 0 6 B963R:U 0 7 B964R:C 0 [Edges] 0 {B950R:G -> B951R:A: adjacent_5p upward } 0 1 {B951R:A -> B950R:G: adjacent_3p downward } 0 2 {B950R:G -> B964R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B964R:C -> B950R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B951R:A -> B952R:G: adjacent_5p upward } 0 5 {B952R:G -> B951R:A: adjacent_3p downward } 0 6 {B951R:A -> B963R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B963R:U -> B951R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B952R:G -> B953R:G: adjacent_5p upward } 0 9 {B953R:G -> B952R:G: adjacent_3p downward } 0 10 {B952R:G -> B962R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B962R:C -> B952R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B953R:G -> B961R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B961R:C -> B953R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B961R:C -> B962R:C: adjacent_5p } 0 15 {B962R:C -> B961R:C: adjacent_3p } 0 16 {B962R:C -> B963R:U: adjacent_5p } 0 17 {B963R:U -> B962R:C: adjacent_3p } 0 18 {B963R:U -> B964R:C: adjacent_5p upward } 0 19 {B964R:C -> B963R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:C 0 3 A5R:G 0 4 A28R:C 0 5 A29R:G 0 6 A30R:C 0 7 A31R:U 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A31R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A31R:U -> A2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A3R:G -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A30R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A29R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A28R:C: pairing antiparallel cis Ww/Ww } 0 13 {A28R:C -> A5R:G: pairing antiparallel cis Ww/Ww } 0 14 {A5R:G -> A29R:G: outward } 0 15 {A29R:G -> A5R:G: outward } 0 16 {A28R:C -> A29R:G: adjacent_5p } 0 17 {A29R:G -> A28R:C: adjacent_3p } 0 18 {A29R:G -> A30R:C: adjacent_5p upward } 0 19 {A30R:C -> A29R:G: adjacent_3p downward } 0 20 {A30R:C -> A31R:U: adjacent_5p } 0 21 {A31R:U -> A30R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:C 0 2 A8R:G 0 3 A9R:G 0 4 A22R:A 0 5 A23R:C 0 6 A24R:G 0 7 A25R:G 0 [Edges] 0 {A6R:C -> A7R:C: adjacent_5p } 0 1 {A7R:C -> A6R:C: adjacent_3p } 0 2 {A6R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:C -> A8R:G: adjacent_5p } 0 5 {A8R:G -> A7R:C: adjacent_3p } 0 6 {A7R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A24R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:G -> A9R:G: adjacent_5p upward } 0 9 {A9R:G -> A8R:G: adjacent_3p downward } 0 10 {A8R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A23R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:G -> A24R:G: outward } 0 13 {A24R:G -> A8R:G: outward } 0 14 {A9R:G -> A22R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {A22R:A -> A9R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {A22R:A -> A23R:C: adjacent_5p upward } 0 17 {A23R:C -> A22R:A: adjacent_3p downward } 0 18 {A23R:C -> A24R:G: adjacent_5p } 0 19 {A24R:G -> A23R:C: adjacent_3p } 0 20 {A24R:G -> A25R:G: adjacent_5p upward } 0 21 {A25R:G -> A24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:U 0 2 A11R:A 0 3 A12R:C 0 4 A17R:G 0 5 A18R:U 0 6 A19R:A 0 7 A20R:C 0 [Edges] 0 {A9R:G -> A10R:U: adjacent_5p upward } 0 1 {A10R:U -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:U -> A11R:A: adjacent_5p upward } 0 5 {A11R:A -> A10R:U: adjacent_3p downward } 0 6 {A10R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A19R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:A -> A12R:C: adjacent_5p upward } 0 9 {A12R:C -> A11R:A: adjacent_3p downward } 0 10 {A11R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A18R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A11R:A -> A19R:A: outward } 0 13 {A19R:A -> A11R:A: outward } 0 14 {A12R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A17R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A17R:G -> A18R:U: adjacent_5p upward } 0 17 {A18R:U -> A17R:G: adjacent_3p downward } 0 18 {A18R:U -> A19R:A: adjacent_5p upward } 0 19 {A19R:A -> A18R:U: adjacent_3p downward } 0 20 {A19R:A -> A20R:C: adjacent_5p upward } 0 21 {A20R:C -> A19R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:C 0 2 A6R:G 0 3 A7R:U 0 4 A16R:A 0 5 A17R:C 0 6 A18R:G 0 7 A19R:G 0 [Edges] 0 {A4R:C -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A18R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> A7R:U: adjacent_5p upward } 0 9 {A7R:U -> A6R:G: adjacent_3p downward } 0 10 {A6R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:G -> A18R:G: outward } 0 13 {A18R:G -> A6R:G: outward } 0 14 {A7R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A16R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A16R:A -> A17R:C: adjacent_5p upward } 0 17 {A17R:C -> A16R:A: adjacent_3p downward } 0 18 {A17R:C -> A18R:G: adjacent_5p upward } 0 19 {A18R:G -> A17R:C: adjacent_3p downward } 0 20 {A18R:G -> A19R:G: adjacent_5p upward } 0 21 {A19R:G -> A18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:A 0 2 A12R:G 0 3 A13R:G 0 4 B29R:C 0 5 B30R:C 0 6 B31R:U 0 7 B32R:C 0 [Edges] 0 {A10R:G -> A11R:A: adjacent_5p upward } 0 1 {A11R:A -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> B32R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B32R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:A -> A12R:G: adjacent_5p upward } 0 5 {A12R:G -> A11R:A: adjacent_3p downward } 0 6 {A11R:A -> B31R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B31R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A12R:G -> A13R:G: adjacent_5p upward } 0 9 {A13R:G -> A12R:G: adjacent_3p downward } 0 10 {A12R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B30R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B29R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B29R:C -> B30R:C: adjacent_5p } 0 15 {B30R:C -> B29R:C: adjacent_3p } 0 16 {B30R:C -> B31R:U: adjacent_5p upward } 0 17 {B31R:U -> B30R:C: adjacent_3p downward } 0 18 {B31R:U -> B32R:C: adjacent_5p upward } 0 19 {B32R:C -> B31R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:A 0 1 A12R:G 0 2 A13R:G 0 3 A14R:A 0 4 B28R:U 0 5 B29R:C 0 6 B30R:C 0 7 B31R:U 0 [Edges] 0 {A11R:A -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:A: adjacent_3p downward } 0 2 {A11R:A -> B31R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B31R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A12R:G -> A13R:G: adjacent_5p upward } 0 5 {A13R:G -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B30R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:G -> A14R:A: adjacent_5p upward } 0 9 {A14R:A -> A13R:G: adjacent_3p downward } 0 10 {A13R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B29R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:A -> B28R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B28R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B28R:U -> B29R:C: adjacent_5p upward } 0 15 {B29R:C -> B28R:U: adjacent_3p downward } 0 16 {B29R:C -> B30R:C: adjacent_5p } 0 17 {B30R:C -> B29R:C: adjacent_3p } 0 18 {B30R:C -> B31R:U: adjacent_5p upward } 0 19 {B31R:U -> B30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:G 0 2 A14R:A 0 3 A15R:C 0 4 B27R:G 0 5 B28R:U 0 6 B29R:C 0 7 B30R:C 0 [Edges] 0 {A12R:G -> A13R:G: adjacent_5p upward } 0 1 {A13R:G -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B30R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:G -> A14R:A: adjacent_5p upward } 0 5 {A14R:A -> A13R:G: adjacent_3p downward } 0 6 {A13R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B29R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:A -> A15R:C: adjacent_5p upward } 0 9 {A15R:C -> A14R:A: adjacent_3p downward } 0 10 {A14R:A -> B28R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B28R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A15R:C -> B27R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B27R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B27R:G -> B28R:U: adjacent_5p upward } 0 15 {B28R:U -> B27R:G: adjacent_3p downward } 0 16 {B28R:U -> B29R:C: adjacent_5p upward } 0 17 {B29R:C -> B28R:U: adjacent_3p downward } 0 18 {B29R:C -> B30R:C: adjacent_5p } 0 19 {B30R:C -> B29R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:C 0 1 A3R:A 0 2 A4R:G 0 3 A5R:G 0 4 B6R:C 0 5 B7R:G 0 6 B8R:U 0 7 B9R:G 0 [Edges] 0 {A2R:C -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:C: adjacent_3p downward } 0 2 {A2R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B9R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B8R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A3R:A -> B9R:G: outward } 0 9 {B9R:G -> A3R:A: outward } 0 10 {A4R:G -> A5R:G: adjacent_5p upward } 0 11 {A5R:G -> A4R:G: adjacent_3p downward } 0 12 {A4R:G -> B7R:G: pairing parallel cis VI Ww/Hh } 0 13 {B7R:G -> A4R:G: pairing parallel cis VI Hh/Ww } 0 14 {A5R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B6R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B6R:C -> B7R:G: adjacent_5p inward } 0 17 {B7R:G -> B6R:C: adjacent_3p inward } 0 18 {B7R:G -> B8R:U: adjacent_5p outward } 0 19 {B8R:U -> B7R:G: adjacent_3p outward } 0 20 {B8R:U -> B9R:G: adjacent_5p upward } 0 21 {B9R:G -> B8R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:G 0 2 A5R:G 0 3 A6R:C 0 4 B5R:G 0 5 B6R:C 0 6 B7R:G 0 7 B8R:U 0 [Edges] 0 {A3R:A -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B8R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B7R:G: pairing parallel cis VI Ww/Hh } 0 7 {B7R:G -> A4R:G: pairing parallel cis VI Hh/Ww } 0 8 {A5R:G -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B6R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B5R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B5R:G -> B6R:C: adjacent_5p upward } 0 15 {B6R:C -> B5R:G: adjacent_3p downward } 0 16 {B6R:C -> B7R:G: adjacent_5p inward } 0 17 {B7R:G -> B6R:C: adjacent_3p inward } 0 18 {B7R:G -> B8R:U: adjacent_5p outward } 0 19 {B8R:U -> B7R:G: adjacent_3p outward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:G 0 2 A6R:C 0 3 A7R:G 0 4 B4R:G 0 5 B5R:G 0 6 B6R:C 0 7 B7R:G 0 [Edges] 0 {A4R:G -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B7R:G: pairing parallel cis VI Ww/Hh } 0 3 {B7R:G -> A4R:G: pairing parallel cis VI Hh/Ww } 0 4 {A5R:G -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B6R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:C -> A7R:G: adjacent_5p inward } 0 9 {A7R:G -> A6R:C: adjacent_3p inward } 0 10 {A6R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B5R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:G -> B4R:G: pairing parallel cis VI Hh/Ww } 0 13 {B4R:G -> A7R:G: pairing parallel cis VI Ww/Hh } 0 14 {B4R:G -> B5R:G: adjacent_5p upward } 0 15 {B5R:G -> B4R:G: adjacent_3p downward } 0 16 {B5R:G -> B6R:C: adjacent_5p upward } 0 17 {B6R:C -> B5R:G: adjacent_3p downward } 0 18 {B6R:C -> B7R:G: adjacent_5p inward } 0 19 {B7R:G -> B6R:C: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:C 0 2 A7R:G 0 3 A8R:U 0 4 B3R:A 0 5 B4R:G 0 6 B5R:G 0 7 B6R:C 0 [Edges] 0 {A5R:G -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B6R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:C -> A7R:G: adjacent_5p inward } 0 5 {A7R:G -> A6R:C: adjacent_3p inward } 0 6 {A6R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B5R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:G -> A8R:U: adjacent_5p outward } 0 9 {A8R:U -> A7R:G: adjacent_3p outward } 0 10 {A7R:G -> B4R:G: pairing parallel cis VI Hh/Ww } 0 11 {B4R:G -> A7R:G: pairing parallel cis VI Ww/Hh } 0 12 {A8R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B3R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B3R:A -> B4R:G: adjacent_5p upward } 0 15 {B4R:G -> B3R:A: adjacent_3p downward } 0 16 {B4R:G -> B5R:G: adjacent_5p upward } 0 17 {B5R:G -> B4R:G: adjacent_3p downward } 0 18 {B5R:G -> B6R:C: adjacent_5p upward } 0 19 {B6R:C -> B5R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:G 0 2 A8R:U 0 3 A9R:G 0 4 B2R:C 0 5 B3R:A 0 6 B4R:G 0 7 B5R:G 0 [Edges] 0 {A6R:C -> A7R:G: adjacent_5p inward } 0 1 {A7R:G -> A6R:C: adjacent_3p inward } 0 2 {A6R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B5R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:G -> A8R:U: adjacent_5p outward } 0 5 {A8R:U -> A7R:G: adjacent_3p outward } 0 6 {A7R:G -> B4R:G: pairing parallel cis VI Hh/Ww } 0 7 {B4R:G -> A7R:G: pairing parallel cis VI Ww/Hh } 0 8 {A8R:U -> A9R:G: adjacent_5p upward } 0 9 {A9R:G -> A8R:U: adjacent_3p downward } 0 10 {A8R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B3R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:G -> B2R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B2R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A9R:G -> B3R:A: outward } 0 15 {B3R:A -> A9R:G: outward } 0 16 {B2R:C -> B3R:A: adjacent_5p upward } 0 17 {B3R:A -> B2R:C: adjacent_3p downward } 0 18 {B3R:A -> B4R:G: adjacent_5p upward } 0 19 {B4R:G -> B3R:A: adjacent_3p downward } 0 20 {B4R:G -> B5R:G: adjacent_5p upward } 0 21 {B5R:G -> B4R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:G 0 3 A5R:G 0 4 A14R:C 0 5 A15R:C 0 6 A16R:A 0 7 A17R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A16R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A15R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A16R:A: outward } 0 13 {A16R:A -> A4R:G: outward } 0 14 {A5R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A14R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A14R:C -> A15R:C: adjacent_5p upward } 0 17 {A15R:C -> A14R:C: adjacent_3p downward } 0 18 {A15R:C -> A16R:A: adjacent_5p } 0 19 {A16R:A -> A15R:C: adjacent_3p } 0 20 {A16R:A -> A17R:C: adjacent_5p upward } 0 21 {A17R:C -> A16R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:G 0 3 A6R:G 0 4 A13R:C 0 5 A14R:C 0 6 A15R:C 0 7 A16R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A16R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A15R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A16R:A: outward } 0 9 {A16R:A -> A4R:G: outward } 0 10 {A5R:G -> A6R:G: adjacent_5p upward } 0 11 {A6R:G -> A5R:G: adjacent_3p downward } 0 12 {A5R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A14R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A13R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A13R:C -> A14R:C: adjacent_5p upward } 0 17 {A14R:C -> A13R:C: adjacent_3p downward } 0 18 {A14R:C -> A15R:C: adjacent_5p upward } 0 19 {A15R:C -> A14R:C: adjacent_3p downward } 0 20 {A15R:C -> A16R:A: adjacent_5p } 0 21 {A16R:A -> A15R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:G 0 2 A6R:G 0 3 A7R:A 0 4 A12R:U 0 5 A13R:C 0 6 A14R:C 0 7 A15R:C 0 [Edges] 0 {A4R:G -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A15R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:G -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A14R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> A7R:A: adjacent_5p upward } 0 9 {A7R:A -> A6R:G: adjacent_3p downward } 0 10 {A6R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A13R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A12R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A12R:U -> A13R:C: adjacent_5p upward } 0 15 {A13R:C -> A12R:U: adjacent_3p downward } 0 16 {A13R:C -> A14R:C: adjacent_5p upward } 0 17 {A14R:C -> A13R:C: adjacent_3p downward } 0 18 {A14R:C -> A15R:C: adjacent_5p upward } 0 19 {A15R:C -> A14R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:G 0 2 A7R:A 0 3 A8R:G 0 4 A11R:G 0 5 A12R:U 0 6 A13R:C 0 7 A14R:C 0 [Edges] 0 {A5R:G -> A6R:G: adjacent_5p upward } 0 1 {A6R:G -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A14R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:G -> A7R:A: adjacent_5p upward } 0 5 {A7R:A -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A13R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:A -> A8R:G: adjacent_5p upward } 0 9 {A8R:G -> A7R:A: adjacent_3p downward } 0 10 {A7R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A12R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A8R:G -> A11R:G: pairing antiparallel trans one_hbond 108 Sw/Hh } 0 13 {A11R:G -> A8R:G: pairing antiparallel trans one_hbond 108 Hh/Sw } 0 14 {A11R:G -> A12R:U: adjacent_5p } 0 15 {A12R:U -> A11R:G: adjacent_3p } 0 16 {A12R:U -> A13R:C: adjacent_5p upward } 0 17 {A13R:C -> A12R:U: adjacent_3p downward } 0 18 {A13R:C -> A14R:C: adjacent_5p upward } 0 19 {A14R:C -> A13R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B2R:G 0 1 B3R:U 0 2 B4R:G 0 3 B5R:G 0 4 B14R:C 0 5 B15R:C 0 6 B16R:A 0 7 B17R:C 0 [Edges] 0 {B2R:G -> B3R:U: adjacent_5p upward } 0 1 {B3R:U -> B2R:G: adjacent_3p downward } 0 2 {B2R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B17R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B3R:U -> B4R:G: adjacent_5p upward } 0 5 {B4R:G -> B3R:U: adjacent_3p downward } 0 6 {B3R:U -> B16R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B16R:A -> B3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B4R:G -> B5R:G: adjacent_5p upward } 0 9 {B5R:G -> B4R:G: adjacent_3p downward } 0 10 {B4R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B15R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B4R:G -> B16R:A: outward } 0 13 {B16R:A -> B4R:G: outward } 0 14 {B5R:G -> B14R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B14R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B14R:C -> B15R:C: adjacent_5p upward } 0 17 {B15R:C -> B14R:C: adjacent_3p downward } 0 18 {B15R:C -> B16R:A: adjacent_5p upward } 0 19 {B16R:A -> B15R:C: adjacent_3p downward } 0 20 {B16R:A -> B17R:C: adjacent_5p upward } 0 21 {B17R:C -> B16R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B3R:U 0 1 B4R:G 0 2 B5R:G 0 3 B6R:G 0 4 B13R:C 0 5 B14R:C 0 6 B15R:C 0 7 B16R:A 0 [Edges] 0 {B3R:U -> B4R:G: adjacent_5p upward } 0 1 {B4R:G -> B3R:U: adjacent_3p downward } 0 2 {B3R:U -> B16R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B16R:A -> B3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B4R:G -> B5R:G: adjacent_5p upward } 0 5 {B5R:G -> B4R:G: adjacent_3p downward } 0 6 {B4R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B15R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B4R:G -> B16R:A: outward } 0 9 {B16R:A -> B4R:G: outward } 0 10 {B5R:G -> B6R:G: adjacent_5p upward } 0 11 {B6R:G -> B5R:G: adjacent_3p downward } 0 12 {B5R:G -> B14R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B14R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B6R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B13R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B13R:C -> B14R:C: adjacent_5p upward } 0 17 {B14R:C -> B13R:C: adjacent_3p downward } 0 18 {B14R:C -> B15R:C: adjacent_5p upward } 0 19 {B15R:C -> B14R:C: adjacent_3p downward } 0 20 {B15R:C -> B16R:A: adjacent_5p upward } 0 21 {B16R:A -> B15R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B4R:G 0 1 B5R:G 0 2 B6R:G 0 3 B7R:A 0 4 B12R:U 0 5 B13R:C 0 6 B14R:C 0 7 B15R:C 0 [Edges] 0 {B4R:G -> B5R:G: adjacent_5p upward } 0 1 {B5R:G -> B4R:G: adjacent_3p downward } 0 2 {B4R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B5R:G -> B6R:G: adjacent_5p upward } 0 5 {B6R:G -> B5R:G: adjacent_3p downward } 0 6 {B5R:G -> B14R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B14R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B6R:G -> B7R:A: adjacent_5p upward } 0 9 {B7R:A -> B6R:G: adjacent_3p downward } 0 10 {B6R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B13R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B7R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B12R:U -> B7R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B12R:U -> B13R:C: adjacent_5p upward } 0 15 {B13R:C -> B12R:U: adjacent_3p downward } 0 16 {B13R:C -> B14R:C: adjacent_5p upward } 0 17 {B14R:C -> B13R:C: adjacent_3p downward } 0 18 {B14R:C -> B15R:C: adjacent_5p upward } 0 19 {B15R:C -> B14R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B5R:G 0 1 B6R:G 0 2 B7R:A 0 3 B8R:G 0 4 B11R:G 0 5 B12R:U 0 6 B13R:C 0 7 B14R:C 0 [Edges] 0 {B5R:G -> B6R:G: adjacent_5p upward } 0 1 {B6R:G -> B5R:G: adjacent_3p downward } 0 2 {B5R:G -> B14R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B14R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B6R:G -> B7R:A: adjacent_5p upward } 0 5 {B7R:A -> B6R:G: adjacent_3p downward } 0 6 {B6R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B13R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B7R:A -> B8R:G: adjacent_5p upward } 0 9 {B8R:G -> B7R:A: adjacent_3p downward } 0 10 {B7R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B12R:U -> B7R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B8R:G -> B11R:G: pairing antiparallel trans one_hbond 108 Sw/Hh } 0 13 {B11R:G -> B8R:G: pairing antiparallel trans one_hbond 108 Hh/Sw } 0 14 {B11R:G -> B12R:U: adjacent_5p } 0 15 {B12R:U -> B11R:G: adjacent_3p } 0 16 {B12R:U -> B13R:C: adjacent_5p upward } 0 17 {B13R:C -> B12R:U: adjacent_3p downward } 0 18 {B13R:C -> B14R:C: adjacent_5p upward } 0 19 {B14R:C -> B13R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B201R:G 0 1 B202R:G 0 2 B203R:C 0 3 B204R:G 0 4 B216R:C 0 5 B217R:G 0 6 B218R:C 0 7 B219R:C 0 [Edges] 0 {B201R:G -> B202R:G: adjacent_5p upward } 0 1 {B202R:G -> B201R:G: adjacent_3p downward } 0 2 {B201R:G -> B219R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B219R:C -> B201R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B202R:G -> B203R:C: adjacent_5p upward } 0 5 {B203R:C -> B202R:G: adjacent_3p downward } 0 6 {B202R:G -> B218R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B218R:C -> B202R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B203R:C -> B204R:G: adjacent_5p } 0 9 {B204R:G -> B203R:C: adjacent_3p } 0 10 {B203R:C -> B217R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B217R:G -> B203R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B204R:G -> B216R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B216R:C -> B204R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B216R:C -> B217R:G: adjacent_5p } 0 15 {B217R:G -> B216R:C: adjacent_3p } 0 16 {B217R:G -> B218R:C: adjacent_5p upward } 0 17 {B218R:C -> B217R:G: adjacent_3p downward } 0 18 {B218R:C -> B219R:C: adjacent_5p upward } 0 19 {B219R:C -> B218R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B202R:G 0 1 B203R:C 0 2 B204R:G 0 3 B205R:A 0 4 B215R:A 0 5 B216R:C 0 6 B217R:G 0 7 B218R:C 0 [Edges] 0 {B202R:G -> B203R:C: adjacent_5p upward } 0 1 {B203R:C -> B202R:G: adjacent_3p downward } 0 2 {B202R:G -> B218R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B218R:C -> B202R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B203R:C -> B204R:G: adjacent_5p } 0 5 {B204R:G -> B203R:C: adjacent_3p } 0 6 {B203R:C -> B217R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B217R:G -> B203R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B204R:G -> B205R:A: adjacent_5p upward } 0 9 {B205R:A -> B204R:G: adjacent_3p downward } 0 10 {B204R:G -> B216R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B216R:C -> B204R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B205R:A -> B215R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 13 {B215R:A -> B205R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 14 {B215R:A -> B216R:C: adjacent_5p upward } 0 15 {B216R:C -> B215R:A: adjacent_3p downward } 0 16 {B216R:C -> B217R:G: adjacent_5p } 0 17 {B217R:G -> B216R:C: adjacent_3p } 0 18 {B217R:G -> B218R:C: adjacent_5p upward } 0 19 {B218R:C -> B217R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:A 0 3 A5R:G 0 4 A23R:C 0 5 A24R:U 0 6 A25R:U 0 7 A26R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A26R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A25R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A25R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A24R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A23R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A23R:C -> A24R:U: adjacent_5p upward } 0 15 {A24R:U -> A23R:C: adjacent_3p downward } 0 16 {A24R:U -> A25R:U: adjacent_5p } 0 17 {A25R:U -> A24R:U: adjacent_3p } 0 18 {A25R:U -> A26R:C: adjacent_5p upward } 0 19 {A26R:C -> A25R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:C 0 2 A9R:G 0 3 A10R:G 0 4 A19R:C 0 5 A20R:C 0 6 A21R:G 0 7 A22R:G 0 [Edges] 0 {A7R:C -> A8R:C: adjacent_5p } 0 1 {A8R:C -> A7R:C: adjacent_3p } 0 2 {A7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:C -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:C: adjacent_3p downward } 0 6 {A8R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:G -> A19R:C: pairing antiparallel cis Ww/Ww } 0 13 {A19R:C -> A10R:G: pairing antiparallel cis Ww/Ww } 0 14 {A19R:C -> A20R:C: adjacent_5p } 0 15 {A20R:C -> A19R:C: adjacent_3p } 0 16 {A20R:C -> A21R:G: adjacent_5p upward } 0 17 {A21R:G -> A20R:C: adjacent_3p downward } 0 18 {A21R:G -> A22R:G: adjacent_5p } 0 19 {A22R:G -> A21R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:G 0 2 A10R:G 0 3 A11R:U 0 4 A18R:A 0 5 A19R:C 0 6 A20R:C 0 7 A21R:G 0 [Edges] 0 {A8R:C -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:C: adjacent_3p downward } 0 2 {A8R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:G -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:G -> A11R:U: adjacent_5p upward } 0 9 {A11R:U -> A10R:G: adjacent_3p downward } 0 10 {A10R:G -> A19R:C: pairing antiparallel cis Ww/Ww } 0 11 {A19R:C -> A10R:G: pairing antiparallel cis Ww/Ww } 0 12 {A11R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A18R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A18R:A -> A19R:C: adjacent_5p upward } 0 15 {A19R:C -> A18R:A: adjacent_3p downward } 0 16 {A19R:C -> A20R:C: adjacent_5p } 0 17 {A20R:C -> A19R:C: adjacent_3p } 0 18 {A20R:C -> A21R:G: adjacent_5p upward } 0 19 {A21R:G -> A20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:G 0 2 A11R:U 0 3 A12R:C 0 4 A17R:G 0 5 A18R:A 0 6 A19R:C 0 7 A20R:C 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:G -> A11R:U: adjacent_5p upward } 0 5 {A11R:U -> A10R:G: adjacent_3p downward } 0 6 {A10R:G -> A19R:C: pairing antiparallel cis Ww/Ww } 0 7 {A19R:C -> A10R:G: pairing antiparallel cis Ww/Ww } 0 8 {A11R:U -> A12R:C: adjacent_5p } 0 9 {A12R:C -> A11R:U: adjacent_3p } 0 10 {A11R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A18R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A12R:C -> A17R:G: pairing antiparallel cis Ww/Ww } 0 13 {A17R:G -> A12R:C: pairing antiparallel cis Ww/Ww } 0 14 {A17R:G -> A18R:A: adjacent_5p upward } 0 15 {A18R:A -> A17R:G: adjacent_3p downward } 0 16 {A18R:A -> A19R:C: adjacent_5p upward } 0 17 {A19R:C -> A18R:A: adjacent_3p downward } 0 18 {A19R:C -> A20R:C: adjacent_5p } 0 19 {A20R:C -> A19R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:A 0 3 A5R:G 0 4 A23R:C 0 5 A24R:U 0 6 A25R:U 0 7 A26R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A26R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A25R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A25R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A24R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A23R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A23R:C -> A24R:U: adjacent_5p upward } 0 15 {A24R:U -> A23R:C: adjacent_3p downward } 0 16 {A24R:U -> A25R:U: adjacent_5p } 0 17 {A25R:U -> A24R:U: adjacent_3p } 0 18 {A25R:U -> A26R:C: adjacent_5p } 0 19 {A26R:C -> A25R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:A 0 2 A5R:G 0 3 A6R:U 0 4 A22R:G 0 5 A23R:C 0 6 A24R:U 0 7 A25R:U 0 [Edges] 0 {A3R:A -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A25R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A25R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:A -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A24R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:G -> A6R:U: adjacent_5p } 0 9 {A6R:U -> A5R:G: adjacent_3p } 0 10 {A5R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A23R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:U -> A22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A22R:G -> A6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A22R:G -> A23R:C: adjacent_5p upward } 0 15 {A23R:C -> A22R:G: adjacent_3p downward } 0 16 {A23R:C -> A24R:U: adjacent_5p upward } 0 17 {A24R:U -> A23R:C: adjacent_3p downward } 0 18 {A24R:U -> A25R:U: adjacent_5p } 0 19 {A25R:U -> A24R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:G 0 2 A10R:G 0 3 A11R:U 0 4 A18R:A 0 5 A19R:C 0 6 A20R:C 0 7 A21R:G 0 [Edges] 0 {A8R:C -> A9R:G: adjacent_5p } 0 1 {A9R:G -> A8R:C: adjacent_3p } 0 2 {A8R:C -> A21R:G: pairing antiparallel cis Ww/Ww } 0 3 {A21R:G -> A8R:C: pairing antiparallel cis Ww/Ww } 0 4 {A9R:G -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> A21R:G: outward } 0 9 {A21R:G -> A9R:G: outward } 0 10 {A10R:G -> A11R:U: adjacent_5p upward } 0 11 {A11R:U -> A10R:G: adjacent_3p downward } 0 12 {A10R:G -> A19R:C: pairing antiparallel cis Ww/Ww } 0 13 {A19R:C -> A10R:G: pairing antiparallel cis Ww/Ww } 0 14 {A11R:U -> A18R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 15 {A18R:A -> A11R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 16 {A18R:A -> A19R:C: adjacent_5p upward } 0 17 {A19R:C -> A18R:A: adjacent_3p downward } 0 18 {A19R:C -> A20R:C: adjacent_5p } 0 19 {A20R:C -> A19R:C: adjacent_3p } 0 20 {A20R:C -> A21R:G: adjacent_5p pairing parallel cis one_hbond Wh/Hw } 0 21 {A21R:G -> A20R:C: adjacent_3p pairing parallel cis one_hbond Hw/Wh } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:G 0 2 A11R:U 0 3 A12R:C 0 4 A17R:G 0 5 A18R:A 0 6 A19R:C 0 7 A20R:C 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:G -> A11R:U: adjacent_5p upward } 0 5 {A11R:U -> A10R:G: adjacent_3p downward } 0 6 {A10R:G -> A19R:C: pairing antiparallel cis Ww/Ww } 0 7 {A19R:C -> A10R:G: pairing antiparallel cis Ww/Ww } 0 8 {A11R:U -> A12R:C: adjacent_5p } 0 9 {A12R:C -> A11R:U: adjacent_3p } 0 10 {A11R:U -> A18R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {A18R:A -> A11R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {A12R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A17R:G -> A18R:A: adjacent_5p upward } 0 15 {A18R:A -> A17R:G: adjacent_3p downward } 0 16 {A18R:A -> A19R:C: adjacent_5p upward } 0 17 {A19R:C -> A18R:A: adjacent_3p downward } 0 18 {A19R:C -> A20R:C: adjacent_5p } 0 19 {A20R:C -> A19R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:U 0 2 A12R:C 0 3 A13R:U 0 4 A16R:G 0 5 A17R:G 0 6 A18R:A 0 7 A19R:C 0 [Edges] 0 {A10R:G -> A11R:U: adjacent_5p upward } 0 1 {A11R:U -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> A19R:C: pairing antiparallel cis Ww/Ww } 0 3 {A19R:C -> A10R:G: pairing antiparallel cis Ww/Ww } 0 4 {A11R:U -> A12R:C: adjacent_5p } 0 5 {A12R:C -> A11R:U: adjacent_3p } 0 6 {A11R:U -> A18R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {A18R:A -> A11R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {A12R:C -> A13R:U: adjacent_5p upward } 0 9 {A13R:U -> A12R:C: adjacent_3p downward } 0 10 {A12R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:U -> A16R:G: pairing parallel trans one_hbond Ss/Ww } 0 13 {A16R:G -> A13R:U: pairing parallel trans one_hbond Ww/Ss } 0 14 {A16R:G -> A17R:G: adjacent_5p } 0 15 {A17R:G -> A16R:G: adjacent_3p } 0 16 {A17R:G -> A18R:A: adjacent_5p upward } 0 17 {A18R:A -> A17R:G: adjacent_3p downward } 0 18 {A18R:A -> A19R:C: adjacent_5p upward } 0 19 {A19R:C -> A18R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B902R:U 0 1 B903R:C 0 2 B904R:C 0 3 B905R:U 0 4 B968R:G 0 5 B969R:G 0 6 B970R:G 0 7 B971R:A 0 [Edges] 0 {B902R:U -> B903R:C: adjacent_5p upward } 0 1 {B903R:C -> B902R:U: adjacent_3p downward } 0 2 {B902R:U -> B971R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B971R:A -> B902R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B903R:C -> B904R:C: adjacent_5p upward } 0 5 {B904R:C -> B903R:C: adjacent_3p downward } 0 6 {B903R:C -> B970R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B970R:G -> B903R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B904R:C -> B905R:U: adjacent_5p upward } 0 9 {B905R:U -> B904R:C: adjacent_3p downward } 0 10 {B904R:C -> B969R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B969R:G -> B904R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B905R:U -> B968R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {B968R:G -> B905R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {B968R:G -> B969R:G: adjacent_5p upward } 0 15 {B969R:G -> B968R:G: adjacent_3p downward } 0 16 {B969R:G -> B970R:G: adjacent_5p upward } 0 17 {B970R:G -> B969R:G: adjacent_3p downward } 0 18 {B970R:G -> B971R:A: adjacent_5p upward } 0 19 {B971R:A -> B970R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B903R:C 0 1 B904R:C 0 2 B905R:U 0 3 B906R:C 0 4 B967R:G 0 5 B968R:G 0 6 B969R:G 0 7 B970R:G 0 [Edges] 0 {B903R:C -> B904R:C: adjacent_5p upward } 0 1 {B904R:C -> B903R:C: adjacent_3p downward } 0 2 {B903R:C -> B970R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B970R:G -> B903R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B904R:C -> B905R:U: adjacent_5p upward } 0 5 {B905R:U -> B904R:C: adjacent_3p downward } 0 6 {B904R:C -> B969R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B969R:G -> B904R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B905R:U -> B906R:C: adjacent_5p } 0 9 {B906R:C -> B905R:U: adjacent_3p } 0 10 {B905R:U -> B968R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B968R:G -> B905R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {B906R:C -> B967R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B967R:G -> B906R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B967R:G -> B968R:G: adjacent_5p upward } 0 15 {B968R:G -> B967R:G: adjacent_3p downward } 0 16 {B968R:G -> B969R:G: adjacent_5p upward } 0 17 {B969R:G -> B968R:G: adjacent_3p downward } 0 18 {B969R:G -> B970R:G: adjacent_5p upward } 0 19 {B970R:G -> B969R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B904R:C 0 1 B905R:U 0 2 B906R:C 0 3 B907R:G 0 4 B966R:C 0 5 B967R:G 0 6 B968R:G 0 7 B969R:G 0 [Edges] 0 {B904R:C -> B905R:U: adjacent_5p upward } 0 1 {B905R:U -> B904R:C: adjacent_3p downward } 0 2 {B904R:C -> B969R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B969R:G -> B904R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B905R:U -> B906R:C: adjacent_5p } 0 5 {B906R:C -> B905R:U: adjacent_3p } 0 6 {B905R:U -> B968R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B968R:G -> B905R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {B906R:C -> B907R:G: adjacent_5p upward } 0 9 {B907R:G -> B906R:C: adjacent_3p downward } 0 10 {B906R:C -> B967R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B967R:G -> B906R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B907R:G -> B966R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B966R:C -> B907R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B907R:G -> B967R:G: outward } 0 15 {B967R:G -> B907R:G: outward } 0 16 {B966R:C -> B967R:G: adjacent_5p upward } 0 17 {B967R:G -> B966R:C: adjacent_3p downward } 0 18 {B967R:G -> B968R:G: adjacent_5p upward } 0 19 {B968R:G -> B967R:G: adjacent_3p downward } 0 20 {B968R:G -> B969R:G: adjacent_5p upward } 0 21 {B969R:G -> B968R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B911R:C 0 1 B912R:C 0 2 B913R:C 0 3 B914R:A 0 4 B921R:A 0 5 B922R:C 0 6 B923R:G 0 7 B924R:G 0 [Edges] 0 {B911R:C -> B912R:C: adjacent_5p } 0 1 {B912R:C -> B911R:C: adjacent_3p } 0 2 {B911R:C -> B924R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B924R:G -> B911R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B912R:C -> B913R:C: adjacent_5p upward } 0 5 {B913R:C -> B912R:C: adjacent_3p downward } 0 6 {B912R:C -> B923R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B923R:G -> B912R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B913R:C -> B914R:A: adjacent_5p } 0 9 {B914R:A -> B913R:C: adjacent_3p } 0 10 {B913R:C -> B922R:C: pairing antiparallel cis one_hbond 137 Ws/Wh } 0 11 {B922R:C -> B913R:C: pairing antiparallel cis one_hbond 137 Wh/Ws } 0 12 {B914R:A -> B921R:A: pairing antiparallel trans one_hbond 40 Wh/Ss } 0 13 {B921R:A -> B914R:A: pairing antiparallel trans one_hbond 40 Ss/Wh } 0 14 {B914R:A -> B922R:C: outward } 0 15 {B922R:C -> B914R:A: outward } 0 16 {B921R:A -> B922R:C: adjacent_5p } 0 17 {B922R:C -> B921R:A: adjacent_3p } 0 18 {B922R:C -> B923R:G: adjacent_5p upward } 0 19 {B923R:G -> B922R:C: adjacent_3p downward } 0 20 {B923R:G -> B924R:G: adjacent_5p upward } 0 21 {B924R:G -> B923R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B928R:C 0 1 B929R:U 0 2 B930R:G 0 3 B931R:G 0 4 B939R:C 0 5 B940R:C 0 6 B941R:A 0 7 B942R:G 0 [Edges] 0 {B928R:C -> B929R:U: adjacent_5p upward } 0 1 {B929R:U -> B928R:C: adjacent_3p downward } 0 2 {B928R:C -> B942R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B942R:G -> B928R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B929R:U -> B930R:G: adjacent_5p } 0 5 {B930R:G -> B929R:U: adjacent_3p } 0 6 {B929R:U -> B941R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B941R:A -> B929R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B930R:G -> B931R:G: adjacent_5p upward } 0 9 {B931R:G -> B930R:G: adjacent_3p downward } 0 10 {B930R:G -> B940R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B940R:C -> B930R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B930R:G -> B941R:A: outward } 0 13 {B941R:A -> B930R:G: outward } 0 14 {B931R:G -> B939R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B939R:C -> B931R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B939R:C -> B940R:C: adjacent_5p } 0 17 {B940R:C -> B939R:C: adjacent_3p } 0 18 {B940R:C -> B941R:A: adjacent_5p } 0 19 {B941R:A -> B940R:C: adjacent_3p } 0 20 {B941R:A -> B942R:G: adjacent_5p upward } 0 21 {B942R:G -> B941R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B950R:C 0 1 B951R:A 0 2 B952R:G 0 3 B953R:G 0 4 B961R:C 0 5 B962R:C 0 6 B963R:U 0 7 B964R:G 0 [Edges] 0 {B950R:C -> B951R:A: adjacent_5p } 0 1 {B951R:A -> B950R:C: adjacent_3p } 0 2 {B950R:C -> B964R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B964R:G -> B950R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B951R:A -> B952R:G: adjacent_5p upward } 0 5 {B952R:G -> B951R:A: adjacent_3p downward } 0 6 {B951R:A -> B963R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B963R:U -> B951R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B951R:A -> B964R:G: outward } 0 9 {B964R:G -> B951R:A: outward } 0 10 {B952R:G -> B953R:G: adjacent_5p upward } 0 11 {B953R:G -> B952R:G: adjacent_3p downward } 0 12 {B952R:G -> B962R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B962R:C -> B952R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B953R:G -> B961R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B961R:C -> B953R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B961R:C -> B962R:C: adjacent_5p } 0 17 {B962R:C -> B961R:C: adjacent_3p } 0 18 {B962R:C -> B963R:U: adjacent_5p } 0 19 {B963R:U -> B962R:C: adjacent_3p } 0 20 {B963R:U -> B964R:G: adjacent_5p upward } 0 21 {B964R:G -> B963R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:C 0 3 A5R:G 0 4 A25R:A 0 5 A26R:G 0 6 A27R:G 0 7 A28R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A28R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A27R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A26R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A25R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 13 {A25R:A -> A5R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 14 {A25R:A -> A26R:G: adjacent_5p upward } 0 15 {A26R:G -> A25R:A: adjacent_3p downward } 0 16 {A26R:G -> A27R:G: adjacent_5p upward } 0 17 {A27R:G -> A26R:G: adjacent_3p downward } 0 18 {A27R:G -> A28R:C: adjacent_5p upward } 0 19 {A28R:C -> A27R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:C 0 2 A5R:G 0 3 A6R:A 0 4 A24R:A 0 5 A25R:A 0 6 A26R:G 0 7 A27R:G 0 [Edges] 0 {A3R:C -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A26R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A6R:A: adjacent_5p inward } 0 9 {A6R:A -> A5R:G: adjacent_3p inward } 0 10 {A5R:G -> A25R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 11 {A25R:A -> A5R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 12 {A6R:A -> A24R:A: pairing parallel trans II Hh/Hh } 0 13 {A24R:A -> A6R:A: pairing parallel trans II Hh/Hh } 0 14 {A24R:A -> A25R:A: adjacent_5p upward } 0 15 {A25R:A -> A24R:A: adjacent_3p downward } 0 16 {A25R:A -> A26R:G: adjacent_5p upward } 0 17 {A26R:G -> A25R:A: adjacent_3p downward } 0 18 {A26R:G -> A27R:G: adjacent_5p upward } 0 19 {A27R:G -> A26R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:A 0 2 A10R:G 0 3 A11R:U 0 4 A20R:G 0 5 A21R:C 0 6 A22R:G 0 7 A23R:A 0 [Edges] 0 {A8R:U -> A9R:A: adjacent_5p } 0 1 {A9R:A -> A8R:U: adjacent_3p } 0 2 {A8R:U -> A23R:A: pairing antiparallel trans XXIV Ww/Hh } 0 3 {A23R:A -> A8R:U: pairing antiparallel trans XXIV Hh/Ww } 0 4 {A9R:A -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:A: adjacent_3p downward } 0 6 {A9R:A -> A22R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {A22R:G -> A9R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {A9R:A -> A23R:A: outward } 0 9 {A23R:A -> A9R:A: outward } 0 10 {A10R:G -> A11R:U: adjacent_5p upward } 0 11 {A11R:U -> A10R:G: adjacent_3p downward } 0 12 {A10R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A21R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A11R:U -> A20R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A20R:G -> A11R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A20R:G -> A21R:C: adjacent_5p upward } 0 17 {A21R:C -> A20R:G: adjacent_3p downward } 0 18 {A21R:C -> A22R:G: adjacent_5p upward } 0 19 {A22R:G -> A21R:C: adjacent_3p downward } 0 20 {A22R:G -> A23R:A: adjacent_5p } 0 21 {A23R:A -> A22R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:A 0 1 A10R:G 0 2 A11R:U 0 3 A12R:G 0 4 A19R:C 0 5 A20R:G 0 6 A21R:C 0 7 A22R:G 0 [Edges] 0 {A9R:A -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:A: adjacent_3p downward } 0 2 {A9R:A -> A22R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A22R:G -> A9R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A10R:G -> A11R:U: adjacent_5p upward } 0 5 {A11R:U -> A10R:G: adjacent_3p downward } 0 6 {A10R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:U -> A12R:G: adjacent_5p } 0 9 {A12R:G -> A11R:U: adjacent_3p } 0 10 {A11R:U -> A20R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A20R:G -> A11R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A12R:G -> A19R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 13 {A19R:C -> A12R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 14 {A12R:G -> A20R:G: outward } 0 15 {A20R:G -> A12R:G: outward } 0 16 {A19R:C -> A20R:G: adjacent_5p } 0 17 {A20R:G -> A19R:C: adjacent_3p } 0 18 {A20R:G -> A21R:C: adjacent_5p upward } 0 19 {A21R:C -> A20R:G: adjacent_3p downward } 0 20 {A21R:C -> A22R:G: adjacent_5p upward } 0 21 {A22R:G -> A21R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:C 0 3 A5R:U 0 4 A10R:G 0 5 A11R:G 0 6 A12R:G 0 7 A13R:U 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A13R:U -> A2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A3R:C -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A12R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> A11R:G: pairing antiparallel cis Ww/Ww } 0 11 {A11R:G -> A4R:C: pairing antiparallel cis Ww/Ww } 0 12 {A5R:U -> A10R:G: pairing antiparallel cis one_hbond Bs/Ww } 0 13 {A10R:G -> A5R:U: pairing antiparallel cis one_hbond Ww/Bs } 0 14 {A10R:G -> A11R:G: adjacent_5p upward } 0 15 {A11R:G -> A10R:G: adjacent_3p downward } 0 16 {A11R:G -> A12R:G: adjacent_5p upward } 0 17 {A12R:G -> A11R:G: adjacent_3p downward } 0 18 {A12R:G -> A13R:U: adjacent_5p upward } 0 19 {A13R:U -> A12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:C 0 2 A5R:U 0 3 A6R:G 0 4 A9R:A 0 5 A10R:G 0 6 A11R:G 0 7 A12R:G 0 [Edges] 0 {A3R:C -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A12R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> A11R:G: pairing antiparallel cis Ww/Ww } 0 7 {A11R:G -> A4R:C: pairing antiparallel cis Ww/Ww } 0 8 {A5R:U -> A6R:G: adjacent_5p upward } 0 9 {A6R:G -> A5R:U: adjacent_3p downward } 0 10 {A5R:U -> A10R:G: pairing antiparallel cis one_hbond Bs/Ww } 0 11 {A10R:G -> A5R:U: pairing antiparallel cis one_hbond Ww/Bs } 0 12 {A6R:G -> A9R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A9R:A -> A6R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A9R:A -> A10R:G: adjacent_5p upward } 0 15 {A10R:G -> A9R:A: adjacent_3p downward } 0 16 {A10R:G -> A11R:G: adjacent_5p upward } 0 17 {A11R:G -> A10R:G: adjacent_3p downward } 0 18 {A11R:G -> A12R:G: adjacent_5p upward } 0 19 {A12R:G -> A11R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:A 0 4 A18R:G 0 5 A19R:C 0 6 A20R:G 0 7 A21R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A21R:C: pairing antiparallel cis Ww/Ww } 0 3 {A21R:C -> A2R:G: pairing antiparallel cis Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p } 0 5 {A4R:G -> A3R:C: adjacent_3p } 0 6 {A3R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A19R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A20R:G: outward } 0 13 {A20R:G -> A4R:G: outward } 0 14 {A5R:A -> A18R:G: pairing antiparallel cis VIII Ww/Ww } 0 15 {A18R:G -> A5R:A: pairing antiparallel cis VIII Ww/Ww } 0 16 {A18R:G -> A19R:C: adjacent_5p upward } 0 17 {A19R:C -> A18R:G: adjacent_3p downward } 0 18 {A19R:C -> A20R:G: adjacent_5p upward } 0 19 {A20R:G -> A19R:C: adjacent_3p downward } 0 20 {A20R:G -> A21R:C: adjacent_5p } 0 21 {A21R:C -> A20R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:A 0 3 A6R:A 0 4 A17R:G 0 5 A18R:G 0 6 A19R:C 0 7 A20R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p } 0 1 {A4R:G -> A3R:C: adjacent_3p } 0 2 {A3R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A20R:G: outward } 0 9 {A20R:G -> A4R:G: outward } 0 10 {A5R:A -> A6R:A: adjacent_5p upward } 0 11 {A6R:A -> A5R:A: adjacent_3p downward } 0 12 {A5R:A -> A18R:G: pairing antiparallel cis VIII Ww/Ww } 0 13 {A18R:G -> A5R:A: pairing antiparallel cis VIII Ww/Ww } 0 14 {A6R:A -> A17R:G: pairing antiparallel cis VIII Ww/Ww } 0 15 {A17R:G -> A6R:A: pairing antiparallel cis VIII Ww/Ww } 0 16 {A17R:G -> A18R:G: adjacent_5p upward } 0 17 {A18R:G -> A17R:G: adjacent_3p downward } 0 18 {A18R:G -> A19R:C: adjacent_5p upward } 0 19 {A19R:C -> A18R:G: adjacent_3p downward } 0 20 {A19R:C -> A20R:G: adjacent_5p upward } 0 21 {A20R:G -> A19R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:A 0 3 A7R:G 0 4 A16R:U 0 5 A17R:G 0 6 A18R:G 0 7 A19R:C 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> A6R:A: adjacent_5p upward } 0 5 {A6R:A -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> A18R:G: pairing antiparallel cis VIII Ww/Ww } 0 7 {A18R:G -> A5R:A: pairing antiparallel cis VIII Ww/Ww } 0 8 {A6R:A -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:A: adjacent_3p downward } 0 10 {A6R:A -> A17R:G: pairing antiparallel cis VIII Ww/Ww } 0 11 {A17R:G -> A6R:A: pairing antiparallel cis VIII Ww/Ww } 0 12 {A7R:G -> A16R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A16R:U -> A7R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A16R:U -> A17R:G: adjacent_5p } 0 15 {A17R:G -> A16R:U: adjacent_3p } 0 16 {A17R:G -> A18R:G: adjacent_5p upward } 0 17 {A18R:G -> A17R:G: adjacent_3p downward } 0 18 {A18R:G -> A19R:C: adjacent_5p upward } 0 19 {A19R:C -> A18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:A 0 2 A7R:G 0 3 A8R:U 0 4 A15R:A 0 5 A16R:U 0 6 A17R:G 0 7 A18R:G 0 [Edges] 0 {A5R:A -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> A18R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {A18R:G -> A5R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A6R:A -> A7R:G: adjacent_5p upward } 0 5 {A7R:G -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> A17R:G: pairing antiparallel cis VIII Ww/Ww } 0 7 {A17R:G -> A6R:A: pairing antiparallel cis VIII Ww/Ww } 0 8 {A7R:G -> A8R:U: adjacent_5p upward } 0 9 {A8R:U -> A7R:G: adjacent_3p downward } 0 10 {A7R:G -> A16R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A16R:U -> A7R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A8R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A15R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A15R:A -> A16R:U: adjacent_5p upward } 0 15 {A16R:U -> A15R:A: adjacent_3p downward } 0 16 {A16R:U -> A17R:G: adjacent_5p } 0 17 {A17R:G -> A16R:U: adjacent_3p } 0 18 {A17R:G -> A18R:G: adjacent_5p upward } 0 19 {A18R:G -> A17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:G 0 2 A8R:U 0 3 A9R:C 0 4 A14R:G 0 5 A15R:A 0 6 A16R:U 0 7 A17R:G 0 [Edges] 0 {A6R:A -> A7R:G: adjacent_5p upward } 0 1 {A7R:G -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> A17R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {A17R:G -> A6R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A7R:G -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:G: adjacent_3p downward } 0 6 {A7R:G -> A16R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A16R:U -> A7R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A8R:U -> A9R:C: adjacent_5p } 0 9 {A9R:C -> A8R:U: adjacent_3p } 0 10 {A8R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A15R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A14R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:G -> A15R:A: adjacent_5p upward } 0 15 {A15R:A -> A14R:G: adjacent_3p downward } 0 16 {A15R:A -> A16R:U: adjacent_5p upward } 0 17 {A16R:U -> A15R:A: adjacent_3p downward } 0 18 {A16R:U -> A17R:G: adjacent_5p } 0 19 {A17R:G -> A16R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A28R:C 0 1 A29R:A 0 2 A30R:G 0 3 A31R:A 0 4 A39R:U 0 5 A40R:C 0 6 A41R:U 0 7 A42R:G 0 [Edges] 0 {A28R:C -> A29R:A: adjacent_5p } 0 1 {A29R:A -> A28R:C: adjacent_3p } 0 2 {A28R:C -> A42R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A42R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A29R:A -> A30R:G: adjacent_5p upward } 0 5 {A30R:G -> A29R:A: adjacent_3p downward } 0 6 {A29R:A -> A41R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A41R:U -> A29R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A29R:A -> A42R:G: outward } 0 9 {A42R:G -> A29R:A: outward } 0 10 {A30R:G -> A31R:A: adjacent_5p upward } 0 11 {A31R:A -> A30R:G: adjacent_3p downward } 0 12 {A30R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A40R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A31R:A -> A39R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A39R:U -> A31R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A39R:U -> A40R:C: adjacent_5p upward } 0 17 {A40R:C -> A39R:U: adjacent_3p downward } 0 18 {A40R:C -> A41R:U: adjacent_5p } 0 19 {A41R:U -> A40R:C: adjacent_3p } 0 20 {A41R:U -> A42R:G: adjacent_5p } 0 21 {A42R:G -> A41R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A29R:A 0 1 A30R:G 0 2 A31R:A 0 3 A32R:C 0 4 A38R:A 0 5 A39R:U 0 6 A40R:C 0 7 A41R:U 0 [Edges] 0 {A29R:A -> A30R:G: adjacent_5p upward } 0 1 {A30R:G -> A29R:A: adjacent_3p downward } 0 2 {A29R:A -> A41R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A41R:U -> A29R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A30R:G -> A31R:A: adjacent_5p upward } 0 5 {A31R:A -> A30R:G: adjacent_3p downward } 0 6 {A30R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A40R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A31R:A -> A32R:C: adjacent_5p upward } 0 9 {A32R:C -> A31R:A: adjacent_3p downward } 0 10 {A31R:A -> A39R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A39R:U -> A31R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A32R:C -> A38R:A: pairing antiparallel cis 75 Ww/Ww } 0 13 {A38R:A -> A32R:C: pairing antiparallel cis 75 Ww/Ww } 0 14 {A38R:A -> A39R:U: adjacent_5p upward } 0 15 {A39R:U -> A38R:A: adjacent_3p downward } 0 16 {A39R:U -> A40R:C: adjacent_5p upward } 0 17 {A40R:C -> A39R:U: adjacent_3p downward } 0 18 {A40R:C -> A41R:U: adjacent_5p } 0 19 {A41R:U -> A40R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B70R:C 0 1 B71R:C 0 2 B72R:G 0 3 B73R:A 0 4 C103R:U 0 5 C104R:A 0 6 C105R:G 0 7 C106R:G 0 [Edges] 0 {B70R:C -> B71R:C: adjacent_5p upward } 0 1 {B71R:C -> B70R:C: adjacent_3p downward } 0 2 {B70R:C -> C106R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C106R:G -> B70R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B71R:C -> B72R:G: adjacent_5p upward } 0 5 {B72R:G -> B71R:C: adjacent_3p downward } 0 6 {B71R:C -> C105R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C105R:G -> B71R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B72R:G -> B73R:A: adjacent_5p } 0 9 {B73R:A -> B72R:G: adjacent_3p } 0 10 {B72R:G -> C104R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {C104R:A -> B72R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {B73R:A -> C103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 13 {C103R:U -> B73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 14 {B73R:A -> C104R:A: outward } 0 15 {C104R:A -> B73R:A: outward } 0 16 {C103R:U -> C104R:A: adjacent_5p } 0 17 {C104R:A -> C103R:U: adjacent_3p } 0 18 {C104R:A -> C105R:G: adjacent_5p upward } 0 19 {C105R:G -> C104R:A: adjacent_3p downward } 0 20 {C105R:G -> C106R:G: adjacent_5p upward } 0 21 {C106R:G -> C105R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B71R:C 0 1 B72R:G 0 2 B73R:A 0 3 B74R:U 0 4 C102R:G 0 5 C103R:U 0 6 C104R:A 0 7 C105R:G 0 [Edges] 0 {B71R:C -> B72R:G: adjacent_5p upward } 0 1 {B72R:G -> B71R:C: adjacent_3p downward } 0 2 {B71R:C -> C105R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C105R:G -> B71R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B72R:G -> B73R:A: adjacent_5p } 0 5 {B73R:A -> B72R:G: adjacent_3p } 0 6 {B72R:G -> C104R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {C104R:A -> B72R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {B73R:A -> B74R:U: adjacent_5p upward } 0 9 {B74R:U -> B73R:A: adjacent_3p downward } 0 10 {B73R:A -> C103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 11 {C103R:U -> B73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 12 {B73R:A -> C104R:A: outward } 0 13 {C104R:A -> B73R:A: outward } 0 14 {B74R:U -> C102R:G: pairing antiparallel cis one_hbond 94 Bh/Ww } 0 15 {C102R:G -> B74R:U: pairing antiparallel cis one_hbond 94 Ww/Bh } 0 16 {C102R:G -> C103R:U: adjacent_5p upward } 0 17 {C103R:U -> C102R:G: adjacent_3p downward } 0 18 {C103R:U -> C104R:A: adjacent_5p } 0 19 {C104R:A -> C103R:U: adjacent_3p } 0 20 {C104R:A -> C105R:G: adjacent_5p upward } 0 21 {C105R:G -> C104R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B72R:G 0 1 B73R:A 0 2 B74R:U 0 3 B75R:G 0 4 C101R:A 0 5 C102R:G 0 6 C103R:U 0 7 C104R:A 0 [Edges] 0 {B72R:G -> B73R:A: adjacent_5p } 0 1 {B73R:A -> B72R:G: adjacent_3p } 0 2 {B72R:G -> C104R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {C104R:A -> B72R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {B73R:A -> B74R:U: adjacent_5p upward } 0 5 {B74R:U -> B73R:A: adjacent_3p downward } 0 6 {B73R:A -> C103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 7 {C103R:U -> B73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 8 {B73R:A -> C104R:A: outward } 0 9 {C104R:A -> B73R:A: outward } 0 10 {B74R:U -> B75R:G: adjacent_5p upward } 0 11 {B75R:G -> B74R:U: adjacent_3p downward } 0 12 {B74R:U -> C102R:G: pairing antiparallel cis one_hbond 94 Bh/Ww } 0 13 {C102R:G -> B74R:U: pairing antiparallel cis one_hbond 94 Ww/Bh } 0 14 {B75R:G -> C101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 15 {C101R:A -> B75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 16 {C101R:A -> C102R:G: adjacent_5p upward } 0 17 {C102R:G -> C101R:A: adjacent_3p downward } 0 18 {C102R:G -> C103R:U: adjacent_5p upward } 0 19 {C103R:U -> C102R:G: adjacent_3p downward } 0 20 {C103R:U -> C104R:A: adjacent_5p } 0 21 {C104R:A -> C103R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B73R:A 0 1 B74R:U 0 2 B75R:G 0 3 B76R:G 0 4 C100R:G 0 5 C101R:A 0 6 C102R:G 0 7 C103R:U 0 [Edges] 0 {B73R:A -> B74R:U: adjacent_5p upward } 0 1 {B74R:U -> B73R:A: adjacent_3p downward } 0 2 {B73R:A -> C103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {C103R:U -> B73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {B74R:U -> B75R:G: adjacent_5p upward } 0 5 {B75R:G -> B74R:U: adjacent_3p downward } 0 6 {B74R:U -> C102R:G: pairing antiparallel cis one_hbond 94 Bh/Ww } 0 7 {C102R:G -> B74R:U: pairing antiparallel cis one_hbond 94 Ww/Bh } 0 8 {B75R:G -> B76R:G: adjacent_5p upward } 0 9 {B76R:G -> B75R:G: adjacent_3p downward } 0 10 {B75R:G -> C101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {C101R:A -> B75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {B76R:G -> C100R:G: pairing antiparallel trans 115 Ww/Bh } 0 13 {C100R:G -> B76R:G: pairing antiparallel trans 115 Bh/Ww } 0 14 {C100R:G -> C101R:A: adjacent_5p upward } 0 15 {C101R:A -> C100R:G: adjacent_3p downward } 0 16 {C101R:A -> C102R:G: adjacent_5p upward } 0 17 {C102R:G -> C101R:A: adjacent_3p downward } 0 18 {C102R:G -> C103R:U: adjacent_5p upward } 0 19 {C103R:U -> C102R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B74R:U 0 1 B75R:G 0 2 B76R:G 0 3 B77R:U 0 4 C99R:A 0 5 C100R:G 0 6 C101R:A 0 7 C102R:G 0 [Edges] 0 {B74R:U -> B75R:G: adjacent_5p upward } 0 1 {B75R:G -> B74R:U: adjacent_3p downward } 0 2 {B74R:U -> C102R:G: pairing antiparallel cis one_hbond 94 Bh/Ww } 0 3 {C102R:G -> B74R:U: pairing antiparallel cis one_hbond 94 Ww/Bh } 0 4 {B75R:G -> B76R:G: adjacent_5p upward } 0 5 {B76R:G -> B75R:G: adjacent_3p downward } 0 6 {B75R:G -> C101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {C101R:A -> B75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {B76R:G -> B77R:U: adjacent_5p upward } 0 9 {B77R:U -> B76R:G: adjacent_3p downward } 0 10 {B76R:G -> C100R:G: pairing antiparallel trans 115 Ww/Bh } 0 11 {C100R:G -> B76R:G: pairing antiparallel trans 115 Bh/Ww } 0 12 {B77R:U -> C99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 13 {C99R:A -> B77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 14 {C99R:A -> C100R:G: adjacent_5p upward } 0 15 {C100R:G -> C99R:A: adjacent_3p downward } 0 16 {C100R:G -> C101R:A: adjacent_5p upward } 0 17 {C101R:A -> C100R:G: adjacent_3p downward } 0 18 {C101R:A -> C102R:G: adjacent_5p upward } 0 19 {C102R:G -> C101R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B75R:G 0 1 B76R:G 0 2 B77R:U 0 3 B78R:A 0 4 C98R:G 0 5 C99R:A 0 6 C100R:G 0 7 C101R:A 0 [Edges] 0 {B75R:G -> B76R:G: adjacent_5p upward } 0 1 {B76R:G -> B75R:G: adjacent_3p downward } 0 2 {B75R:G -> C101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {C101R:A -> B75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {B76R:G -> B77R:U: adjacent_5p upward } 0 5 {B77R:U -> B76R:G: adjacent_3p downward } 0 6 {B76R:G -> C100R:G: pairing antiparallel trans 115 Ww/Bh } 0 7 {C100R:G -> B76R:G: pairing antiparallel trans 115 Bh/Ww } 0 8 {B77R:U -> B78R:A: adjacent_5p } 0 9 {B78R:A -> B77R:U: adjacent_3p } 0 10 {B77R:U -> C99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 11 {C99R:A -> B77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 12 {B78R:A -> C98R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {C98R:G -> B78R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {B78R:A -> C99R:A: outward } 0 15 {C99R:A -> B78R:A: outward } 0 16 {C98R:G -> C99R:A: adjacent_5p } 0 17 {C99R:A -> C98R:G: adjacent_3p } 0 18 {C99R:A -> C100R:G: adjacent_5p upward } 0 19 {C100R:G -> C99R:A: adjacent_3p downward } 0 20 {C100R:G -> C101R:A: adjacent_5p upward } 0 21 {C101R:A -> C100R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B76R:G 0 1 B77R:U 0 2 B78R:A 0 3 B79R:G 0 4 C97R:C 0 5 C98R:G 0 6 C99R:A 0 7 C100R:G 0 [Edges] 0 {B76R:G -> B77R:U: adjacent_5p upward } 0 1 {B77R:U -> B76R:G: adjacent_3p downward } 0 2 {B76R:G -> C100R:G: pairing antiparallel trans 115 Ww/Bh } 0 3 {C100R:G -> B76R:G: pairing antiparallel trans 115 Bh/Ww } 0 4 {B77R:U -> B78R:A: adjacent_5p } 0 5 {B78R:A -> B77R:U: adjacent_3p } 0 6 {B77R:U -> C99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 7 {C99R:A -> B77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 8 {B78R:A -> B79R:G: adjacent_5p upward } 0 9 {B79R:G -> B78R:A: adjacent_3p downward } 0 10 {B78R:A -> C98R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {C98R:G -> B78R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {B78R:A -> C99R:A: outward } 0 13 {C99R:A -> B78R:A: outward } 0 14 {B79R:G -> C97R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C97R:C -> B79R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C97R:C -> C98R:G: adjacent_5p upward } 0 17 {C98R:G -> C97R:C: adjacent_3p downward } 0 18 {C98R:G -> C99R:A: adjacent_5p } 0 19 {C99R:A -> C98R:G: adjacent_3p } 0 20 {C99R:A -> C100R:G: adjacent_5p upward } 0 21 {C100R:G -> C99R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B77R:U 0 1 B78R:A 0 2 B79R:G 0 3 B80R:U 0 4 C96R:G 0 5 C97R:C 0 6 C98R:G 0 7 C99R:A 0 [Edges] 0 {B77R:U -> B78R:A: adjacent_5p } 0 1 {B78R:A -> B77R:U: adjacent_3p } 0 2 {B77R:U -> C99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {C99R:A -> B77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {B78R:A -> B79R:G: adjacent_5p upward } 0 5 {B79R:G -> B78R:A: adjacent_3p downward } 0 6 {B78R:A -> C98R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {C98R:G -> B78R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {B78R:A -> C99R:A: outward } 0 9 {C99R:A -> B78R:A: outward } 0 10 {B79R:G -> B80R:U: adjacent_5p upward } 0 11 {B80R:U -> B79R:G: adjacent_3p downward } 0 12 {B79R:G -> C97R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C97R:C -> B79R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B80R:U -> C96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {C96R:G -> B80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {C96R:G -> C97R:C: adjacent_5p upward } 0 17 {C97R:C -> C96R:G: adjacent_3p downward } 0 18 {C97R:C -> C98R:G: adjacent_5p upward } 0 19 {C98R:G -> C97R:C: adjacent_3p downward } 0 20 {C98R:G -> C99R:A: adjacent_5p } 0 21 {C99R:A -> C98R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B78R:A 0 1 B79R:G 0 2 B80R:U 0 3 B81R:G 0 4 C95R:U 0 5 C96R:G 0 6 C97R:C 0 7 C98R:G 0 [Edges] 0 {B78R:A -> B79R:G: adjacent_5p upward } 0 1 {B79R:G -> B78R:A: adjacent_3p downward } 0 2 {B78R:A -> C98R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {C98R:G -> B78R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {B79R:G -> B80R:U: adjacent_5p upward } 0 5 {B80R:U -> B79R:G: adjacent_3p downward } 0 6 {B79R:G -> C97R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C97R:C -> B79R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B80R:U -> B81R:G: adjacent_5p } 0 9 {B81R:G -> B80R:U: adjacent_3p } 0 10 {B80R:U -> C96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {C96R:G -> B80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {B81R:G -> C95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {C95R:U -> B81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {B81R:G -> C96R:G: outward } 0 15 {C96R:G -> B81R:G: outward } 0 16 {C95R:U -> C96R:G: adjacent_5p } 0 17 {C96R:G -> C95R:U: adjacent_3p } 0 18 {C96R:G -> C97R:C: adjacent_5p upward } 0 19 {C97R:C -> C96R:G: adjacent_3p downward } 0 20 {C97R:C -> C98R:G: adjacent_5p upward } 0 21 {C98R:G -> C97R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B79R:G 0 1 B80R:U 0 2 B81R:G 0 3 B82R:U 0 4 C94R:A 0 5 C95R:U 0 6 C96R:G 0 7 C97R:C 0 [Edges] 0 {B79R:G -> B80R:U: adjacent_5p upward } 0 1 {B80R:U -> B79R:G: adjacent_3p downward } 0 2 {B79R:G -> C97R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C97R:C -> B79R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B80R:U -> B81R:G: adjacent_5p } 0 5 {B81R:G -> B80R:U: adjacent_3p } 0 6 {B80R:U -> C96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {C96R:G -> B80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {B81R:G -> B82R:U: adjacent_5p upward } 0 9 {B82R:U -> B81R:G: adjacent_3p downward } 0 10 {B81R:G -> C95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {C95R:U -> B81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {B81R:G -> C96R:G: outward } 0 13 {C96R:G -> B81R:G: outward } 0 14 {B82R:U -> C94R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {C94R:A -> B82R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {C94R:A -> C95R:U: adjacent_5p upward } 0 17 {C95R:U -> C94R:A: adjacent_3p downward } 0 18 {C95R:U -> C96R:G: adjacent_5p } 0 19 {C96R:G -> C95R:U: adjacent_3p } 0 20 {C96R:G -> C97R:C: adjacent_5p upward } 0 21 {C97R:C -> C96R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B80R:U 0 1 B81R:G 0 2 B82R:U 0 3 B83R:G 0 4 C93R:C 0 5 C94R:A 0 6 C95R:U 0 7 C96R:G 0 [Edges] 0 {B80R:U -> B81R:G: adjacent_5p } 0 1 {B81R:G -> B80R:U: adjacent_3p } 0 2 {B80R:U -> C96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {C96R:G -> B80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {B81R:G -> B82R:U: adjacent_5p upward } 0 5 {B82R:U -> B81R:G: adjacent_3p downward } 0 6 {B81R:G -> C95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {C95R:U -> B81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B81R:G -> C96R:G: outward } 0 9 {C96R:G -> B81R:G: outward } 0 10 {B82R:U -> B83R:G: adjacent_5p upward } 0 11 {B83R:G -> B82R:U: adjacent_3p downward } 0 12 {B82R:U -> C94R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {C94R:A -> B82R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B83R:G -> C93R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C93R:C -> B83R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B83R:G -> C94R:A: outward } 0 17 {C94R:A -> B83R:G: outward } 0 18 {C93R:C -> C94R:A: adjacent_5p upward } 0 19 {C94R:A -> C93R:C: adjacent_3p downward } 0 20 {C94R:A -> C95R:U: adjacent_5p upward } 0 21 {C95R:U -> C94R:A: adjacent_3p downward } 0 22 {C95R:U -> C96R:G: adjacent_5p } 0 23 {C96R:G -> C95R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 B81R:G 0 1 B82R:U 0 2 B83R:G 0 3 B84R:G 0 4 C92R:C 0 5 C93R:C 0 6 C94R:A 0 7 C95R:U 0 [Edges] 0 {B81R:G -> B82R:U: adjacent_5p upward } 0 1 {B82R:U -> B81R:G: adjacent_3p downward } 0 2 {B81R:G -> C95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {C95R:U -> B81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B82R:U -> B83R:G: adjacent_5p upward } 0 5 {B83R:G -> B82R:U: adjacent_3p downward } 0 6 {B82R:U -> C94R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C94R:A -> B82R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B83R:G -> B84R:G: adjacent_5p upward } 0 9 {B84R:G -> B83R:G: adjacent_3p downward } 0 10 {B83R:G -> C93R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C93R:C -> B83R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B83R:G -> C94R:A: outward } 0 13 {C94R:A -> B83R:G: outward } 0 14 {B84R:G -> C92R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C92R:C -> B84R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C92R:C -> C93R:C: adjacent_5p } 0 17 {C93R:C -> C92R:C: adjacent_3p } 0 18 {C93R:C -> C94R:A: adjacent_5p upward } 0 19 {C94R:A -> C93R:C: adjacent_3p downward } 0 20 {C94R:A -> C95R:U: adjacent_5p upward } 0 21 {C95R:U -> C94R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B82R:U 0 1 B83R:G 0 2 B84R:G 0 3 B85R:G 0 4 C91R:C 0 5 C92R:C 0 6 C93R:C 0 7 C94R:A 0 [Edges] 0 {B82R:U -> B83R:G: adjacent_5p upward } 0 1 {B83R:G -> B82R:U: adjacent_3p downward } 0 2 {B82R:U -> C94R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C94R:A -> B82R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B83R:G -> B84R:G: adjacent_5p upward } 0 5 {B84R:G -> B83R:G: adjacent_3p downward } 0 6 {B83R:G -> C93R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C93R:C -> B83R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B83R:G -> C94R:A: outward } 0 9 {C94R:A -> B83R:G: outward } 0 10 {B84R:G -> B85R:G: adjacent_5p upward } 0 11 {B85R:G -> B84R:G: adjacent_3p downward } 0 12 {B84R:G -> C92R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C92R:C -> B84R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B85R:G -> C91R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C91R:C -> B85R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C91R:C -> C92R:C: adjacent_5p upward } 0 17 {C92R:C -> C91R:C: adjacent_3p downward } 0 18 {C92R:C -> C93R:C: adjacent_5p } 0 19 {C93R:C -> C92R:C: adjacent_3p } 0 20 {C93R:C -> C94R:A: adjacent_5p upward } 0 21 {C94R:A -> C93R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 E70R:C 0 1 E71R:C 0 2 E72R:G 0 3 E73R:A 0 4 F103R:U 0 5 F104R:A 0 6 F105R:G 0 7 F106R:G 0 [Edges] 0 {E70R:C -> E71R:C: adjacent_5p } 0 1 {E71R:C -> E70R:C: adjacent_3p } 0 2 {E70R:C -> F106R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {F106R:G -> E70R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E71R:C -> E72R:G: adjacent_5p upward } 0 5 {E72R:G -> E71R:C: adjacent_3p downward } 0 6 {E71R:C -> F105R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {F105R:G -> E71R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E72R:G -> E73R:A: adjacent_5p } 0 9 {E73R:A -> E72R:G: adjacent_3p } 0 10 {E72R:G -> F104R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {F104R:A -> E72R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {E73R:A -> F103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 13 {F103R:U -> E73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 14 {E73R:A -> F104R:A: outward } 0 15 {F104R:A -> E73R:A: outward } 0 16 {F103R:U -> F104R:A: adjacent_5p upward } 0 17 {F104R:A -> F103R:U: adjacent_3p downward } 0 18 {F104R:A -> F105R:G: adjacent_5p upward } 0 19 {F105R:G -> F104R:A: adjacent_3p downward } 0 20 {F105R:G -> F106R:G: adjacent_5p upward } 0 21 {F106R:G -> F105R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E71R:C 0 1 E72R:G 0 2 E73R:A 0 3 E74R:U 0 4 F102R:G 0 5 F103R:U 0 6 F104R:A 0 7 F105R:G 0 [Edges] 0 {E71R:C -> E72R:G: adjacent_5p upward } 0 1 {E72R:G -> E71R:C: adjacent_3p downward } 0 2 {E71R:C -> F105R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {F105R:G -> E71R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E72R:G -> E73R:A: adjacent_5p } 0 5 {E73R:A -> E72R:G: adjacent_3p } 0 6 {E72R:G -> F104R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {F104R:A -> E72R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {E73R:A -> E74R:U: adjacent_5p upward } 0 9 {E74R:U -> E73R:A: adjacent_3p downward } 0 10 {E73R:A -> F103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 11 {F103R:U -> E73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 12 {E73R:A -> F104R:A: outward } 0 13 {F104R:A -> E73R:A: outward } 0 14 {E74R:U -> F102R:G: pairing antiparallel trans 91 Bh/Ww } 0 15 {F102R:G -> E74R:U: pairing antiparallel trans 91 Ww/Bh } 0 16 {F102R:G -> F103R:U: adjacent_5p upward } 0 17 {F103R:U -> F102R:G: adjacent_3p downward } 0 18 {F103R:U -> F104R:A: adjacent_5p upward } 0 19 {F104R:A -> F103R:U: adjacent_3p downward } 0 20 {F104R:A -> F105R:G: adjacent_5p upward } 0 21 {F105R:G -> F104R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E72R:G 0 1 E73R:A 0 2 E74R:U 0 3 E75R:G 0 4 F101R:A 0 5 F102R:G 0 6 F103R:U 0 7 F104R:A 0 [Edges] 0 {E72R:G -> E73R:A: adjacent_5p } 0 1 {E73R:A -> E72R:G: adjacent_3p } 0 2 {E72R:G -> F104R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {F104R:A -> E72R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {E73R:A -> E74R:U: adjacent_5p upward } 0 5 {E74R:U -> E73R:A: adjacent_3p downward } 0 6 {E73R:A -> F103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 7 {F103R:U -> E73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 8 {E73R:A -> F104R:A: outward } 0 9 {F104R:A -> E73R:A: outward } 0 10 {E74R:U -> E75R:G: adjacent_5p upward } 0 11 {E75R:G -> E74R:U: adjacent_3p downward } 0 12 {E74R:U -> F102R:G: pairing antiparallel trans 91 Bh/Ww } 0 13 {F102R:G -> E74R:U: pairing antiparallel trans 91 Ww/Bh } 0 14 {E75R:G -> F101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 15 {F101R:A -> E75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 16 {F101R:A -> F102R:G: adjacent_5p upward } 0 17 {F102R:G -> F101R:A: adjacent_3p downward } 0 18 {F102R:G -> F103R:U: adjacent_5p upward } 0 19 {F103R:U -> F102R:G: adjacent_3p downward } 0 20 {F103R:U -> F104R:A: adjacent_5p upward } 0 21 {F104R:A -> F103R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 E73R:A 0 1 E74R:U 0 2 E75R:G 0 3 E76R:G 0 4 F100R:G 0 5 F101R:A 0 6 F102R:G 0 7 F103R:U 0 [Edges] 0 {E73R:A -> E74R:U: adjacent_5p upward } 0 1 {E74R:U -> E73R:A: adjacent_3p downward } 0 2 {E73R:A -> F103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {F103R:U -> E73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {E74R:U -> E75R:G: adjacent_5p upward } 0 5 {E75R:G -> E74R:U: adjacent_3p downward } 0 6 {E74R:U -> F102R:G: pairing antiparallel trans 91 Bh/Ww } 0 7 {F102R:G -> E74R:U: pairing antiparallel trans 91 Ww/Bh } 0 8 {E75R:G -> E76R:G: adjacent_5p upward } 0 9 {E76R:G -> E75R:G: adjacent_3p downward } 0 10 {E75R:G -> F101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {F101R:A -> E75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {E76R:G -> F100R:G: pairing antiparallel trans 115 Ww/Bh } 0 13 {F100R:G -> E76R:G: pairing antiparallel trans 115 Bh/Ww } 0 14 {F100R:G -> F101R:A: adjacent_5p upward } 0 15 {F101R:A -> F100R:G: adjacent_3p downward } 0 16 {F101R:A -> F102R:G: adjacent_5p upward } 0 17 {F102R:G -> F101R:A: adjacent_3p downward } 0 18 {F102R:G -> F103R:U: adjacent_5p upward } 0 19 {F103R:U -> F102R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E74R:U 0 1 E75R:G 0 2 E76R:G 0 3 E77R:U 0 4 F99R:A 0 5 F100R:G 0 6 F101R:A 0 7 F102R:G 0 [Edges] 0 {E74R:U -> E75R:G: adjacent_5p upward } 0 1 {E75R:G -> E74R:U: adjacent_3p downward } 0 2 {E74R:U -> F102R:G: pairing antiparallel trans 91 Bh/Ww } 0 3 {F102R:G -> E74R:U: pairing antiparallel trans 91 Ww/Bh } 0 4 {E75R:G -> E76R:G: adjacent_5p upward } 0 5 {E76R:G -> E75R:G: adjacent_3p downward } 0 6 {E75R:G -> F101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {F101R:A -> E75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {E76R:G -> E77R:U: adjacent_5p upward } 0 9 {E77R:U -> E76R:G: adjacent_3p downward } 0 10 {E76R:G -> F100R:G: pairing antiparallel trans 115 Ww/Bh } 0 11 {F100R:G -> E76R:G: pairing antiparallel trans 115 Bh/Ww } 0 12 {E77R:U -> F99R:A: pairing antiparallel trans one_hbond Ww/Hh } 0 13 {F99R:A -> E77R:U: pairing antiparallel trans one_hbond Hh/Ww } 0 14 {F99R:A -> F100R:G: adjacent_5p upward } 0 15 {F100R:G -> F99R:A: adjacent_3p downward } 0 16 {F100R:G -> F101R:A: adjacent_5p upward } 0 17 {F101R:A -> F100R:G: adjacent_3p downward } 0 18 {F101R:A -> F102R:G: adjacent_5p upward } 0 19 {F102R:G -> F101R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E75R:G 0 1 E76R:G 0 2 E77R:U 0 3 E78R:A 0 4 F98R:G 0 5 F99R:A 0 6 F100R:G 0 7 F101R:A 0 [Edges] 0 {E75R:G -> E76R:G: adjacent_5p upward } 0 1 {E76R:G -> E75R:G: adjacent_3p downward } 0 2 {E75R:G -> F101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {F101R:A -> E75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {E76R:G -> E77R:U: adjacent_5p upward } 0 5 {E77R:U -> E76R:G: adjacent_3p downward } 0 6 {E76R:G -> F100R:G: pairing antiparallel trans 115 Ww/Bh } 0 7 {F100R:G -> E76R:G: pairing antiparallel trans 115 Bh/Ww } 0 8 {E77R:U -> E78R:A: adjacent_5p } 0 9 {E78R:A -> E77R:U: adjacent_3p } 0 10 {E77R:U -> F99R:A: pairing antiparallel trans one_hbond Ww/Hh } 0 11 {F99R:A -> E77R:U: pairing antiparallel trans one_hbond Hh/Ww } 0 12 {E78R:A -> F98R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {F98R:G -> E78R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {E78R:A -> F99R:A: outward } 0 15 {F99R:A -> E78R:A: outward } 0 16 {F98R:G -> F99R:A: adjacent_5p } 0 17 {F99R:A -> F98R:G: adjacent_3p } 0 18 {F99R:A -> F100R:G: adjacent_5p upward } 0 19 {F100R:G -> F99R:A: adjacent_3p downward } 0 20 {F100R:G -> F101R:A: adjacent_5p upward } 0 21 {F101R:A -> F100R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E76R:G 0 1 E77R:U 0 2 E78R:A 0 3 E79R:G 0 4 F97R:C 0 5 F98R:G 0 6 F99R:A 0 7 F100R:G 0 [Edges] 0 {E76R:G -> E77R:U: adjacent_5p upward } 0 1 {E77R:U -> E76R:G: adjacent_3p downward } 0 2 {E76R:G -> F100R:G: pairing antiparallel trans 115 Ww/Bh } 0 3 {F100R:G -> E76R:G: pairing antiparallel trans 115 Bh/Ww } 0 4 {E77R:U -> E78R:A: adjacent_5p } 0 5 {E78R:A -> E77R:U: adjacent_3p } 0 6 {E77R:U -> F99R:A: pairing antiparallel trans one_hbond Ww/Hh } 0 7 {F99R:A -> E77R:U: pairing antiparallel trans one_hbond Hh/Ww } 0 8 {E78R:A -> E79R:G: adjacent_5p upward } 0 9 {E79R:G -> E78R:A: adjacent_3p downward } 0 10 {E78R:A -> F98R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {F98R:G -> E78R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {E78R:A -> F99R:A: outward } 0 13 {F99R:A -> E78R:A: outward } 0 14 {E79R:G -> F97R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {F97R:C -> E79R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {F97R:C -> F98R:G: adjacent_5p upward } 0 17 {F98R:G -> F97R:C: adjacent_3p downward } 0 18 {F98R:G -> F99R:A: adjacent_5p } 0 19 {F99R:A -> F98R:G: adjacent_3p } 0 20 {F99R:A -> F100R:G: adjacent_5p upward } 0 21 {F100R:G -> F99R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E77R:U 0 1 E78R:A 0 2 E79R:G 0 3 E80R:U 0 4 F96R:G 0 5 F97R:C 0 6 F98R:G 0 7 F99R:A 0 [Edges] 0 {E77R:U -> E78R:A: adjacent_5p } 0 1 {E78R:A -> E77R:U: adjacent_3p } 0 2 {E77R:U -> F99R:A: pairing antiparallel trans one_hbond Ww/Hh } 0 3 {F99R:A -> E77R:U: pairing antiparallel trans one_hbond Hh/Ww } 0 4 {E78R:A -> E79R:G: adjacent_5p upward } 0 5 {E79R:G -> E78R:A: adjacent_3p downward } 0 6 {E78R:A -> F98R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {F98R:G -> E78R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {E78R:A -> F99R:A: outward } 0 9 {F99R:A -> E78R:A: outward } 0 10 {E79R:G -> E80R:U: adjacent_5p upward } 0 11 {E80R:U -> E79R:G: adjacent_3p downward } 0 12 {E79R:G -> F97R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {F97R:C -> E79R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {E80R:U -> F96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {F96R:G -> E80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {F96R:G -> F97R:C: adjacent_5p upward } 0 17 {F97R:C -> F96R:G: adjacent_3p downward } 0 18 {F97R:C -> F98R:G: adjacent_5p upward } 0 19 {F98R:G -> F97R:C: adjacent_3p downward } 0 20 {F98R:G -> F99R:A: adjacent_5p } 0 21 {F99R:A -> F98R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 E78R:A 0 1 E79R:G 0 2 E80R:U 0 3 E81R:G 0 4 F95R:U 0 5 F96R:G 0 6 F97R:C 0 7 F98R:G 0 [Edges] 0 {E78R:A -> E79R:G: adjacent_5p upward } 0 1 {E79R:G -> E78R:A: adjacent_3p downward } 0 2 {E78R:A -> F98R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {F98R:G -> E78R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {E79R:G -> E80R:U: adjacent_5p upward } 0 5 {E80R:U -> E79R:G: adjacent_3p downward } 0 6 {E79R:G -> F97R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {F97R:C -> E79R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E80R:U -> E81R:G: adjacent_5p } 0 9 {E81R:G -> E80R:U: adjacent_3p } 0 10 {E80R:U -> F96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {F96R:G -> E80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {E81R:G -> F95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {F95R:U -> E81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {E81R:G -> F96R:G: outward } 0 15 {F96R:G -> E81R:G: outward } 0 16 {F95R:U -> F96R:G: adjacent_5p } 0 17 {F96R:G -> F95R:U: adjacent_3p } 0 18 {F96R:G -> F97R:C: adjacent_5p upward } 0 19 {F97R:C -> F96R:G: adjacent_3p downward } 0 20 {F97R:C -> F98R:G: adjacent_5p upward } 0 21 {F98R:G -> F97R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E79R:G 0 1 E80R:U 0 2 E81R:G 0 3 E82R:U 0 4 F94R:A 0 5 F95R:U 0 6 F96R:G 0 7 F97R:C 0 [Edges] 0 {E79R:G -> E80R:U: adjacent_5p upward } 0 1 {E80R:U -> E79R:G: adjacent_3p downward } 0 2 {E79R:G -> F97R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {F97R:C -> E79R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E80R:U -> E81R:G: adjacent_5p } 0 5 {E81R:G -> E80R:U: adjacent_3p } 0 6 {E80R:U -> F96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {F96R:G -> E80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {E81R:G -> E82R:U: adjacent_5p upward } 0 9 {E82R:U -> E81R:G: adjacent_3p downward } 0 10 {E81R:G -> F95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {F95R:U -> E81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {E81R:G -> F96R:G: outward } 0 13 {F96R:G -> E81R:G: outward } 0 14 {E82R:U -> F94R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {F94R:A -> E82R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {F94R:A -> F95R:U: adjacent_5p upward } 0 17 {F95R:U -> F94R:A: adjacent_3p downward } 0 18 {F95R:U -> F96R:G: adjacent_5p } 0 19 {F96R:G -> F95R:U: adjacent_3p } 0 20 {F96R:G -> F97R:C: adjacent_5p upward } 0 21 {F97R:C -> F96R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E80R:U 0 1 E81R:G 0 2 E82R:U 0 3 E83R:G 0 4 F93R:C 0 5 F94R:A 0 6 F95R:U 0 7 F96R:G 0 [Edges] 0 {E80R:U -> E81R:G: adjacent_5p } 0 1 {E81R:G -> E80R:U: adjacent_3p } 0 2 {E80R:U -> F96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {F96R:G -> E80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {E81R:G -> E82R:U: adjacent_5p upward } 0 5 {E82R:U -> E81R:G: adjacent_3p downward } 0 6 {E81R:G -> F95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {F95R:U -> E81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {E81R:G -> F96R:G: outward } 0 9 {F96R:G -> E81R:G: outward } 0 10 {E82R:U -> E83R:G: adjacent_5p upward } 0 11 {E83R:G -> E82R:U: adjacent_3p downward } 0 12 {E82R:U -> F94R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {F94R:A -> E82R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {E83R:G -> F93R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {F93R:C -> E83R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {E83R:G -> F94R:A: outward } 0 17 {F94R:A -> E83R:G: outward } 0 18 {F93R:C -> F94R:A: adjacent_5p upward } 0 19 {F94R:A -> F93R:C: adjacent_3p downward } 0 20 {F94R:A -> F95R:U: adjacent_5p upward } 0 21 {F95R:U -> F94R:A: adjacent_3p downward } 0 22 {F95R:U -> F96R:G: adjacent_5p } 0 23 {F96R:G -> F95R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 E81R:G 0 1 E82R:U 0 2 E83R:G 0 3 E84R:G 0 4 F92R:C 0 5 F93R:C 0 6 F94R:A 0 7 F95R:U 0 [Edges] 0 {E81R:G -> E82R:U: adjacent_5p upward } 0 1 {E82R:U -> E81R:G: adjacent_3p downward } 0 2 {E81R:G -> F95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {F95R:U -> E81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {E82R:U -> E83R:G: adjacent_5p upward } 0 5 {E83R:G -> E82R:U: adjacent_3p downward } 0 6 {E82R:U -> F94R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {F94R:A -> E82R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {E83R:G -> E84R:G: adjacent_5p upward } 0 9 {E84R:G -> E83R:G: adjacent_3p downward } 0 10 {E83R:G -> F93R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {F93R:C -> E83R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E83R:G -> F94R:A: outward } 0 13 {F94R:A -> E83R:G: outward } 0 14 {E84R:G -> F92R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {F92R:C -> E84R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {F92R:C -> F93R:C: adjacent_5p upward } 0 17 {F93R:C -> F92R:C: adjacent_3p downward } 0 18 {F93R:C -> F94R:A: adjacent_5p upward } 0 19 {F94R:A -> F93R:C: adjacent_3p downward } 0 20 {F94R:A -> F95R:U: adjacent_5p upward } 0 21 {F95R:U -> F94R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E82R:U 0 1 E83R:G 0 2 E84R:G 0 3 E85R:G 0 4 F91R:C 0 5 F92R:C 0 6 F93R:C 0 7 F94R:A 0 [Edges] 0 {E82R:U -> E83R:G: adjacent_5p upward } 0 1 {E83R:G -> E82R:U: adjacent_3p downward } 0 2 {E82R:U -> F94R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {F94R:A -> E82R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {E83R:G -> E84R:G: adjacent_5p upward } 0 5 {E84R:G -> E83R:G: adjacent_3p downward } 0 6 {E83R:G -> F93R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {F93R:C -> E83R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E83R:G -> F94R:A: outward } 0 9 {F94R:A -> E83R:G: outward } 0 10 {E84R:G -> E85R:G: adjacent_5p upward } 0 11 {E85R:G -> E84R:G: adjacent_3p downward } 0 12 {E84R:G -> F92R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {F92R:C -> E84R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {E85R:G -> F91R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {F91R:C -> E85R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {F91R:C -> F92R:C: adjacent_5p upward } 0 17 {F92R:C -> F91R:C: adjacent_3p downward } 0 18 {F92R:C -> F93R:C: adjacent_5p upward } 0 19 {F93R:C -> F92R:C: adjacent_3p downward } 0 20 {F93R:C -> F94R:A: adjacent_5p upward } 0 21 {F94R:A -> F93R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2064R:U 0 1 A2065R:C 0 2 A2066R:C 0 3 A2067R:A 0 4 A2078R:U 0 5 A2079R:G 0 6 A2080R:G 0 7 A2081R:A 0 [Edges] 0 {A2064R:U -> A2065R:C: adjacent_5p } 0 1 {A2065R:C -> A2064R:U: adjacent_3p } 0 2 {A2064R:U -> A2081R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A2081R:A -> A2064R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A2065R:C -> A2066R:C: adjacent_5p upward } 0 5 {A2066R:C -> A2065R:C: adjacent_3p downward } 0 6 {A2065R:C -> A2080R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2080R:G -> A2065R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2066R:C -> A2067R:A: adjacent_5p upward } 0 9 {A2067R:A -> A2066R:C: adjacent_3p downward } 0 10 {A2066R:C -> A2079R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2079R:G -> A2066R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2067R:A -> A2078R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A2078R:U -> A2067R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A2067R:A -> A2079R:G: outward } 0 15 {A2079R:G -> A2067R:A: outward } 0 16 {A2078R:U -> A2079R:G: adjacent_5p } 0 17 {A2079R:G -> A2078R:U: adjacent_3p } 0 18 {A2079R:G -> A2080R:G: adjacent_5p upward } 0 19 {A2080R:G -> A2079R:G: adjacent_3p downward } 0 20 {A2080R:G -> A2081R:A: adjacent_5p upward } 0 21 {A2081R:A -> A2080R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2065R:C 0 1 A2066R:C 0 2 A2067R:A 0 3 A2068R:G 0 4 A2077R:C 0 5 A2078R:U 0 6 A2079R:G 0 7 A2080R:G 0 [Edges] 0 {A2065R:C -> A2066R:C: adjacent_5p upward } 0 1 {A2066R:C -> A2065R:C: adjacent_3p downward } 0 2 {A2065R:C -> A2080R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2080R:G -> A2065R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2066R:C -> A2067R:A: adjacent_5p upward } 0 5 {A2067R:A -> A2066R:C: adjacent_3p downward } 0 6 {A2066R:C -> A2079R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2079R:G -> A2066R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2067R:A -> A2068R:G: adjacent_5p upward } 0 9 {A2068R:G -> A2067R:A: adjacent_3p downward } 0 10 {A2067R:A -> A2078R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A2078R:U -> A2067R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A2067R:A -> A2079R:G: outward } 0 13 {A2079R:G -> A2067R:A: outward } 0 14 {A2068R:G -> A2077R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A2077R:C -> A2068R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A2077R:C -> A2078R:U: adjacent_5p upward } 0 17 {A2078R:U -> A2077R:C: adjacent_3p downward } 0 18 {A2078R:U -> A2079R:G: adjacent_5p } 0 19 {A2079R:G -> A2078R:U: adjacent_3p } 0 20 {A2079R:G -> A2080R:G: adjacent_5p upward } 0 21 {A2080R:G -> A2079R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2084R:C 0 1 A2085R:A 0 2 A2086R:C 0 3 A2087R:C 0 4 A2657R:G 0 5 A2658R:G 0 6 A2659R:U 0 7 A2660R:G 0 [Edges] 0 {A2084R:C -> A2085R:A: adjacent_5p } 0 1 {A2085R:A -> A2084R:C: adjacent_3p } 0 2 {A2084R:C -> A2660R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2660R:G -> A2084R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2085R:A -> A2086R:C: adjacent_5p upward } 0 5 {A2086R:C -> A2085R:A: adjacent_3p downward } 0 6 {A2085R:A -> A2659R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A2659R:U -> A2085R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A2085R:A -> A2660R:G: outward } 0 9 {A2660R:G -> A2085R:A: outward } 0 10 {A2086R:C -> A2087R:C: adjacent_5p upward } 0 11 {A2087R:C -> A2086R:C: adjacent_3p downward } 0 12 {A2086R:C -> A2658R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2658R:G -> A2086R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2087R:C -> A2657R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A2657R:G -> A2087R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A2657R:G -> A2658R:G: adjacent_5p upward } 0 17 {A2658R:G -> A2657R:G: adjacent_3p downward } 0 18 {A2658R:G -> A2659R:U: adjacent_5p upward } 0 19 {A2659R:U -> A2658R:G: adjacent_3p downward } 0 20 {A2659R:U -> A2660R:G: adjacent_5p upward } 0 21 {A2660R:G -> A2659R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A2085R:A 0 1 A2086R:C 0 2 A2087R:C 0 3 A2088R:C 0 4 A2656R:G 0 5 A2657R:G 0 6 A2658R:G 0 7 A2659R:U 0 [Edges] 0 {A2085R:A -> A2086R:C: adjacent_5p upward } 0 1 {A2086R:C -> A2085R:A: adjacent_3p downward } 0 2 {A2085R:A -> A2659R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A2659R:U -> A2085R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A2086R:C -> A2087R:C: adjacent_5p upward } 0 5 {A2087R:C -> A2086R:C: adjacent_3p downward } 0 6 {A2086R:C -> A2658R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2658R:G -> A2086R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2087R:C -> A2088R:C: adjacent_5p } 0 9 {A2088R:C -> A2087R:C: adjacent_3p } 0 10 {A2087R:C -> A2657R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2657R:G -> A2087R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2088R:C -> A2656R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2656R:G -> A2088R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2088R:C -> A2657R:G: outward } 0 15 {A2657R:G -> A2088R:C: outward } 0 16 {A2656R:G -> A2657R:G: adjacent_5p upward } 0 17 {A2657R:G -> A2656R:G: adjacent_3p downward } 0 18 {A2657R:G -> A2658R:G: adjacent_5p upward } 0 19 {A2658R:G -> A2657R:G: adjacent_3p downward } 0 20 {A2658R:G -> A2659R:U: adjacent_5p upward } 0 21 {A2659R:U -> A2658R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2086R:C 0 1 A2087R:C 0 2 A2088R:C 0 3 A2089R:A 0 4 A2655R:U 0 5 A2656R:G 0 6 A2657R:G 0 7 A2658R:G 0 [Edges] 0 {A2086R:C -> A2087R:C: adjacent_5p upward } 0 1 {A2087R:C -> A2086R:C: adjacent_3p downward } 0 2 {A2086R:C -> A2658R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2658R:G -> A2086R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2087R:C -> A2088R:C: adjacent_5p } 0 5 {A2088R:C -> A2087R:C: adjacent_3p } 0 6 {A2087R:C -> A2657R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2657R:G -> A2087R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2088R:C -> A2089R:A: adjacent_5p upward } 0 9 {A2089R:A -> A2088R:C: adjacent_3p downward } 0 10 {A2088R:C -> A2656R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2656R:G -> A2088R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2088R:C -> A2657R:G: outward } 0 13 {A2657R:G -> A2088R:C: outward } 0 14 {A2089R:A -> A2655R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A2655R:U -> A2089R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A2089R:A -> A2656R:G: outward } 0 17 {A2656R:G -> A2089R:A: outward } 0 18 {A2655R:U -> A2656R:G: adjacent_5p upward } 0 19 {A2656R:G -> A2655R:U: adjacent_3p downward } 0 20 {A2656R:G -> A2657R:G: adjacent_5p upward } 0 21 {A2657R:G -> A2656R:G: adjacent_3p downward } 0 22 {A2657R:G -> A2658R:G: adjacent_5p upward } 0 23 {A2658R:G -> A2657R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A2087R:C 0 1 A2088R:C 0 2 A2089R:A 0 3 A2090R:G 0 4 A2654R:C 0 5 A2655R:U 0 6 A2656R:G 0 7 A2657R:G 0 [Edges] 0 {A2087R:C -> A2088R:C: adjacent_5p } 0 1 {A2088R:C -> A2087R:C: adjacent_3p } 0 2 {A2087R:C -> A2657R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2657R:G -> A2087R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2088R:C -> A2089R:A: adjacent_5p upward } 0 5 {A2089R:A -> A2088R:C: adjacent_3p downward } 0 6 {A2088R:C -> A2656R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2656R:G -> A2088R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2088R:C -> A2657R:G: outward } 0 9 {A2657R:G -> A2088R:C: outward } 0 10 {A2089R:A -> A2090R:G: adjacent_5p upward } 0 11 {A2090R:G -> A2089R:A: adjacent_3p downward } 0 12 {A2089R:A -> A2655R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A2655R:U -> A2089R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A2089R:A -> A2656R:G: outward } 0 15 {A2656R:G -> A2089R:A: outward } 0 16 {A2090R:G -> A2654R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {A2654R:C -> A2090R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {A2654R:C -> A2655R:U: adjacent_5p upward } 0 19 {A2655R:U -> A2654R:C: adjacent_3p downward } 0 20 {A2655R:U -> A2656R:G: adjacent_5p upward } 0 21 {A2656R:G -> A2655R:U: adjacent_3p downward } 0 22 {A2656R:G -> A2657R:G: adjacent_5p upward } 0 23 {A2657R:G -> A2656R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A2088R:C 0 1 A2089R:A 0 2 A2090R:G 0 3 A2091R:G 0 4 A2653R:A 0 5 A2654R:C 0 6 A2655R:U 0 7 A2656R:G 0 [Edges] 0 {A2088R:C -> A2089R:A: adjacent_5p upward } 0 1 {A2089R:A -> A2088R:C: adjacent_3p downward } 0 2 {A2088R:C -> A2656R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2656R:G -> A2088R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2089R:A -> A2090R:G: adjacent_5p upward } 0 5 {A2090R:G -> A2089R:A: adjacent_3p downward } 0 6 {A2089R:A -> A2655R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A2655R:U -> A2089R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A2089R:A -> A2656R:G: outward } 0 9 {A2656R:G -> A2089R:A: outward } 0 10 {A2090R:G -> A2091R:G: adjacent_5p upward } 0 11 {A2091R:G -> A2090R:G: adjacent_3p downward } 0 12 {A2090R:G -> A2654R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2654R:C -> A2090R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2091R:G -> A2653R:A: pairing antiparallel cis VIII Ww/Ww } 0 15 {A2653R:A -> A2091R:G: pairing antiparallel cis VIII Ww/Ww } 0 16 {A2653R:A -> A2654R:C: adjacent_5p upward } 0 17 {A2654R:C -> A2653R:A: adjacent_3p downward } 0 18 {A2654R:C -> A2655R:U: adjacent_5p upward } 0 19 {A2655R:U -> A2654R:C: adjacent_3p downward } 0 20 {A2655R:U -> A2656R:G: adjacent_5p upward } 0 21 {A2656R:G -> A2655R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A2089R:A 0 1 A2090R:G 0 2 A2091R:G 0 3 A2092R:G 0 4 A2652R:U 0 5 A2653R:A 0 6 A2654R:C 0 7 A2655R:U 0 [Edges] 0 {A2089R:A -> A2090R:G: adjacent_5p upward } 0 1 {A2090R:G -> A2089R:A: adjacent_3p downward } 0 2 {A2089R:A -> A2655R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A2655R:U -> A2089R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A2090R:G -> A2091R:G: adjacent_5p upward } 0 5 {A2091R:G -> A2090R:G: adjacent_3p downward } 0 6 {A2090R:G -> A2654R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2654R:C -> A2090R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2091R:G -> A2092R:G: adjacent_5p upward } 0 9 {A2092R:G -> A2091R:G: adjacent_3p downward } 0 10 {A2091R:G -> A2653R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {A2653R:A -> A2091R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {A2092R:G -> A2652R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 13 {A2652R:U -> A2092R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 14 {A2652R:U -> A2653R:A: adjacent_5p upward } 0 15 {A2653R:A -> A2652R:U: adjacent_3p downward } 0 16 {A2653R:A -> A2654R:C: adjacent_5p upward } 0 17 {A2654R:C -> A2653R:A: adjacent_3p downward } 0 18 {A2654R:C -> A2655R:U: adjacent_5p upward } 0 19 {A2655R:U -> A2654R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2112R:A 0 1 A2113R:G 0 2 A2114R:C 0 3 A2115R:U 0 4 A2470R:A 0 5 A2471R:G 0 6 A2472R:C 0 7 A2473R:U 0 [Edges] 0 {A2112R:A -> A2113R:G: adjacent_5p upward } 0 1 {A2113R:G -> A2112R:A: adjacent_3p downward } 0 2 {A2112R:A -> A2473R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A2473R:U -> A2112R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A2113R:G -> A2114R:C: adjacent_5p upward } 0 5 {A2114R:C -> A2113R:G: adjacent_3p downward } 0 6 {A2113R:G -> A2472R:C: pairing antiparallel cis 122 Ww/Ww } 0 7 {A2472R:C -> A2113R:G: pairing antiparallel cis 122 Ww/Ww } 0 8 {A2114R:C -> A2115R:U: adjacent_5p upward } 0 9 {A2115R:U -> A2114R:C: adjacent_3p downward } 0 10 {A2114R:C -> A2471R:G: pairing antiparallel cis 128 Ww/Ww } 0 11 {A2471R:G -> A2114R:C: pairing antiparallel cis 128 Ww/Ww } 0 12 {A2115R:U -> A2470R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A2470R:A -> A2115R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A2470R:A -> A2471R:G: adjacent_5p upward } 0 15 {A2471R:G -> A2470R:A: adjacent_3p downward } 0 16 {A2471R:G -> A2472R:C: adjacent_5p upward } 0 17 {A2472R:C -> A2471R:G: adjacent_3p downward } 0 18 {A2472R:C -> A2473R:U: adjacent_5p upward } 0 19 {A2473R:U -> A2472R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2118R:A 0 1 A2119R:C 0 2 A2120R:U 0 3 A2121R:G 0 4 A2273R:C 0 5 A2274R:A 0 6 A2275R:G 0 7 A2276R:U 0 [Edges] 0 {A2118R:A -> A2119R:C: adjacent_5p upward } 0 1 {A2119R:C -> A2118R:A: adjacent_3p downward } 0 2 {A2118R:A -> A2276R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A2276R:U -> A2118R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A2119R:C -> A2120R:U: adjacent_5p upward } 0 5 {A2120R:U -> A2119R:C: adjacent_3p downward } 0 6 {A2119R:C -> A2275R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2275R:G -> A2119R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2120R:U -> A2121R:G: adjacent_5p upward } 0 9 {A2121R:G -> A2120R:U: adjacent_3p downward } 0 10 {A2120R:U -> A2274R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A2274R:A -> A2120R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A2121R:G -> A2273R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2273R:C -> A2121R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2121R:G -> A2274R:A: outward } 0 15 {A2274R:A -> A2121R:G: outward } 0 16 {A2273R:C -> A2274R:A: adjacent_5p } 0 17 {A2274R:A -> A2273R:C: adjacent_3p } 0 18 {A2274R:A -> A2275R:G: adjacent_5p upward } 0 19 {A2275R:G -> A2274R:A: adjacent_3p downward } 0 20 {A2275R:G -> A2276R:U: adjacent_5p upward } 0 21 {A2276R:U -> A2275R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2119R:C 0 1 A2120R:U 0 2 A2121R:G 0 3 A2122R:C 0 4 A2272R:G 0 5 A2273R:C 0 6 A2274R:A 0 7 A2275R:G 0 [Edges] 0 {A2119R:C -> A2120R:U: adjacent_5p upward } 0 1 {A2120R:U -> A2119R:C: adjacent_3p downward } 0 2 {A2119R:C -> A2275R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2275R:G -> A2119R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2120R:U -> A2121R:G: adjacent_5p upward } 0 5 {A2121R:G -> A2120R:U: adjacent_3p downward } 0 6 {A2120R:U -> A2274R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A2274R:A -> A2120R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A2121R:G -> A2122R:C: adjacent_5p upward } 0 9 {A2122R:C -> A2121R:G: adjacent_3p downward } 0 10 {A2121R:G -> A2273R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2273R:C -> A2121R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2121R:G -> A2274R:A: outward } 0 13 {A2274R:A -> A2121R:G: outward } 0 14 {A2122R:C -> A2272R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A2272R:G -> A2122R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A2272R:G -> A2273R:C: adjacent_5p upward } 0 17 {A2273R:C -> A2272R:G: adjacent_3p downward } 0 18 {A2273R:C -> A2274R:A: adjacent_5p } 0 19 {A2274R:A -> A2273R:C: adjacent_3p } 0 20 {A2274R:A -> A2275R:G: adjacent_5p upward } 0 21 {A2275R:G -> A2274R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2123R:A 0 1 A2124R:G 0 2 A2125R:G 0 3 A2126R:C 0 4 A2267R:G 0 5 A2268R:C 0 6 A2269R:C 0 7 A2270R:G 0 [Edges] 0 {A2123R:A -> A2124R:G: adjacent_5p upward } 0 1 {A2124R:G -> A2123R:A: adjacent_3p downward } 0 2 {A2123R:A -> A2270R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A2270R:G -> A2123R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A2124R:G -> A2125R:G: adjacent_5p upward } 0 5 {A2125R:G -> A2124R:G: adjacent_3p downward } 0 6 {A2124R:G -> A2269R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2269R:C -> A2124R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2125R:G -> A2126R:C: adjacent_5p upward } 0 9 {A2126R:C -> A2125R:G: adjacent_3p downward } 0 10 {A2125R:G -> A2268R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2268R:C -> A2125R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2126R:C -> A2267R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2267R:G -> A2126R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2267R:G -> A2268R:C: adjacent_5p upward } 0 15 {A2268R:C -> A2267R:G: adjacent_3p downward } 0 16 {A2268R:C -> A2269R:C: adjacent_5p upward } 0 17 {A2269R:C -> A2268R:C: adjacent_3p downward } 0 18 {A2269R:C -> A2270R:G: adjacent_5p upward } 0 19 {A2270R:G -> A2269R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2124R:G 0 1 A2125R:G 0 2 A2126R:C 0 3 A2127R:U 0 4 A2266R:A 0 5 A2267R:G 0 6 A2268R:C 0 7 A2269R:C 0 [Edges] 0 {A2124R:G -> A2125R:G: adjacent_5p upward } 0 1 {A2125R:G -> A2124R:G: adjacent_3p downward } 0 2 {A2124R:G -> A2269R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2269R:C -> A2124R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2125R:G -> A2126R:C: adjacent_5p upward } 0 5 {A2126R:C -> A2125R:G: adjacent_3p downward } 0 6 {A2125R:G -> A2268R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2268R:C -> A2125R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2126R:C -> A2127R:U: adjacent_5p upward } 0 9 {A2127R:U -> A2126R:C: adjacent_3p downward } 0 10 {A2126R:C -> A2267R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2267R:G -> A2126R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2127R:U -> A2266R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A2266R:A -> A2127R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A2266R:A -> A2267R:G: adjacent_5p upward } 0 15 {A2267R:G -> A2266R:A: adjacent_3p downward } 0 16 {A2267R:G -> A2268R:C: adjacent_5p upward } 0 17 {A2268R:C -> A2267R:G: adjacent_3p downward } 0 18 {A2268R:C -> A2269R:C: adjacent_5p upward } 0 19 {A2269R:C -> A2268R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2125R:G 0 1 A2126R:C 0 2 A2127R:U 0 3 A2128R:G 0 4 A2265R:U 0 5 A2266R:A 0 6 A2267R:G 0 7 A2268R:C 0 [Edges] 0 {A2125R:G -> A2126R:C: adjacent_5p upward } 0 1 {A2126R:C -> A2125R:G: adjacent_3p downward } 0 2 {A2125R:G -> A2268R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2268R:C -> A2125R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2126R:C -> A2127R:U: adjacent_5p upward } 0 5 {A2127R:U -> A2126R:C: adjacent_3p downward } 0 6 {A2126R:C -> A2267R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2267R:G -> A2126R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2127R:U -> A2128R:G: adjacent_5p } 0 9 {A2128R:G -> A2127R:U: adjacent_3p } 0 10 {A2127R:U -> A2266R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A2266R:A -> A2127R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A2128R:G -> A2265R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A2265R:U -> A2128R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A2128R:G -> A2266R:A: outward } 0 15 {A2266R:A -> A2128R:G: outward } 0 16 {A2265R:U -> A2266R:A: adjacent_5p } 0 17 {A2266R:A -> A2265R:U: adjacent_3p } 0 18 {A2266R:A -> A2267R:G: adjacent_5p upward } 0 19 {A2267R:G -> A2266R:A: adjacent_3p downward } 0 20 {A2267R:G -> A2268R:C: adjacent_5p upward } 0 21 {A2268R:C -> A2267R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2126R:C 0 1 A2127R:U 0 2 A2128R:G 0 3 A2129R:U 0 4 A2264R:A 0 5 A2265R:U 0 6 A2266R:A 0 7 A2267R:G 0 [Edges] 0 {A2126R:C -> A2127R:U: adjacent_5p upward } 0 1 {A2127R:U -> A2126R:C: adjacent_3p downward } 0 2 {A2126R:C -> A2267R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2267R:G -> A2126R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2127R:U -> A2128R:G: adjacent_5p } 0 5 {A2128R:G -> A2127R:U: adjacent_3p } 0 6 {A2127R:U -> A2266R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A2266R:A -> A2127R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A2128R:G -> A2129R:U: adjacent_5p upward } 0 9 {A2129R:U -> A2128R:G: adjacent_3p downward } 0 10 {A2128R:G -> A2265R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A2265R:U -> A2128R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A2128R:G -> A2266R:A: outward } 0 13 {A2266R:A -> A2128R:G: outward } 0 14 {A2129R:U -> A2264R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A2264R:A -> A2129R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A2264R:A -> A2265R:U: adjacent_5p upward } 0 17 {A2265R:U -> A2264R:A: adjacent_3p downward } 0 18 {A2265R:U -> A2266R:A: adjacent_5p } 0 19 {A2266R:A -> A2265R:U: adjacent_3p } 0 20 {A2266R:A -> A2267R:G: adjacent_5p upward } 0 21 {A2267R:G -> A2266R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2127R:U 0 1 A2128R:G 0 2 A2129R:U 0 3 A2130R:C 0 4 A2263R:G 0 5 A2264R:A 0 6 A2265R:U 0 7 A2266R:A 0 [Edges] 0 {A2127R:U -> A2128R:G: adjacent_5p } 0 1 {A2128R:G -> A2127R:U: adjacent_3p } 0 2 {A2127R:U -> A2266R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A2266R:A -> A2127R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A2128R:G -> A2129R:U: adjacent_5p upward } 0 5 {A2129R:U -> A2128R:G: adjacent_3p downward } 0 6 {A2128R:G -> A2265R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A2265R:U -> A2128R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A2128R:G -> A2266R:A: outward } 0 9 {A2266R:A -> A2128R:G: outward } 0 10 {A2129R:U -> A2130R:C: adjacent_5p upward } 0 11 {A2130R:C -> A2129R:U: adjacent_3p downward } 0 12 {A2129R:U -> A2264R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A2264R:A -> A2129R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A2130R:C -> A2263R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A2263R:G -> A2130R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A2263R:G -> A2264R:A: adjacent_5p upward } 0 17 {A2264R:A -> A2263R:G: adjacent_3p downward } 0 18 {A2264R:A -> A2265R:U: adjacent_5p upward } 0 19 {A2265R:U -> A2264R:A: adjacent_3p downward } 0 20 {A2265R:U -> A2266R:A: adjacent_5p } 0 21 {A2266R:A -> A2265R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A2128R:G 0 1 A2129R:U 0 2 A2130R:C 0 3 A2131R:G 0 4 A2262R:C 0 5 A2263R:G 0 6 A2264R:A 0 7 A2265R:U 0 [Edges] 0 {A2128R:G -> A2129R:U: adjacent_5p upward } 0 1 {A2129R:U -> A2128R:G: adjacent_3p downward } 0 2 {A2128R:G -> A2265R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A2265R:U -> A2128R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A2129R:U -> A2130R:C: adjacent_5p upward } 0 5 {A2130R:C -> A2129R:U: adjacent_3p downward } 0 6 {A2129R:U -> A2264R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A2264R:A -> A2129R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A2130R:C -> A2131R:G: adjacent_5p } 0 9 {A2131R:G -> A2130R:C: adjacent_3p } 0 10 {A2130R:C -> A2263R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2263R:G -> A2130R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2131R:G -> A2262R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2262R:C -> A2131R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2131R:G -> A2263R:G: outward } 0 15 {A2263R:G -> A2131R:G: outward } 0 16 {A2262R:C -> A2263R:G: adjacent_5p } 0 17 {A2263R:G -> A2262R:C: adjacent_3p } 0 18 {A2263R:G -> A2264R:A: adjacent_5p upward } 0 19 {A2264R:A -> A2263R:G: adjacent_3p downward } 0 20 {A2264R:A -> A2265R:U: adjacent_5p upward } 0 21 {A2265R:U -> A2264R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2129R:U 0 1 A2130R:C 0 2 A2131R:G 0 3 A2132R:C 0 4 A2261R:C 0 5 A2262R:C 0 6 A2263R:G 0 7 A2264R:A 0 [Edges] 0 {A2129R:U -> A2130R:C: adjacent_5p upward } 0 1 {A2130R:C -> A2129R:U: adjacent_3p downward } 0 2 {A2129R:U -> A2264R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A2264R:A -> A2129R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A2130R:C -> A2131R:G: adjacent_5p } 0 5 {A2131R:G -> A2130R:C: adjacent_3p } 0 6 {A2130R:C -> A2263R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2263R:G -> A2130R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2131R:G -> A2132R:C: adjacent_5p upward } 0 9 {A2132R:C -> A2131R:G: adjacent_3p downward } 0 10 {A2131R:G -> A2262R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2262R:C -> A2131R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2131R:G -> A2263R:G: outward } 0 13 {A2263R:G -> A2131R:G: outward } 0 14 {A2132R:C -> A2261R:C: pairing antiparallel cis one_hbond 137 Ws/Wh } 0 15 {A2261R:C -> A2132R:C: pairing antiparallel cis one_hbond 137 Wh/Ws } 0 16 {A2261R:C -> A2262R:C: adjacent_5p upward } 0 17 {A2262R:C -> A2261R:C: adjacent_3p downward } 0 18 {A2262R:C -> A2263R:G: adjacent_5p } 0 19 {A2263R:G -> A2262R:C: adjacent_3p } 0 20 {A2263R:G -> A2264R:A: adjacent_5p upward } 0 21 {A2264R:A -> A2263R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2130R:C 0 1 A2131R:G 0 2 A2132R:C 0 3 A2133R:U 0 4 A2260R:A 0 5 A2261R:C 0 6 A2262R:C 0 7 A2263R:G 0 [Edges] 0 {A2130R:C -> A2131R:G: adjacent_5p } 0 1 {A2131R:G -> A2130R:C: adjacent_3p } 0 2 {A2130R:C -> A2263R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2263R:G -> A2130R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2131R:G -> A2132R:C: adjacent_5p upward } 0 5 {A2132R:C -> A2131R:G: adjacent_3p downward } 0 6 {A2131R:G -> A2262R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2262R:C -> A2131R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2131R:G -> A2263R:G: outward } 0 9 {A2263R:G -> A2131R:G: outward } 0 10 {A2132R:C -> A2133R:U: adjacent_5p inward } 0 11 {A2133R:U -> A2132R:C: adjacent_3p inward } 0 12 {A2132R:C -> A2261R:C: pairing antiparallel cis one_hbond 137 Ws/Wh } 0 13 {A2261R:C -> A2132R:C: pairing antiparallel cis one_hbond 137 Wh/Ws } 0 14 {A2133R:U -> A2260R:A: pairing parallel trans one_hbond 50 Hw/Hw } 0 15 {A2260R:A -> A2133R:U: pairing parallel trans one_hbond 50 Hw/Hw } 0 16 {A2260R:A -> A2261R:C: adjacent_5p upward } 0 17 {A2261R:C -> A2260R:A: adjacent_3p downward } 0 18 {A2261R:C -> A2262R:C: adjacent_5p upward } 0 19 {A2262R:C -> A2261R:C: adjacent_3p downward } 0 20 {A2262R:C -> A2263R:G: adjacent_5p } 0 21 {A2263R:G -> A2262R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A2244R:A 0 1 A2245R:C 0 2 A2246R:U 0 3 A2247R:C 0 4 A2254R:G 0 5 A2255R:A 0 6 A2256R:G 0 7 A2257R:G 0 [Edges] 0 {A2244R:A -> A2245R:C: adjacent_5p upward } 0 1 {A2245R:C -> A2244R:A: adjacent_3p downward } 0 2 {A2244R:A -> A2257R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A2257R:G -> A2244R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A2245R:C -> A2246R:U: adjacent_5p upward } 0 5 {A2246R:U -> A2245R:C: adjacent_3p downward } 0 6 {A2245R:C -> A2256R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2256R:G -> A2245R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2246R:U -> A2247R:C: adjacent_5p upward } 0 9 {A2247R:C -> A2246R:U: adjacent_3p downward } 0 10 {A2246R:U -> A2255R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A2255R:A -> A2246R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A2247R:C -> A2254R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2254R:G -> A2247R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2254R:G -> A2255R:A: adjacent_5p upward } 0 15 {A2255R:A -> A2254R:G: adjacent_3p downward } 0 16 {A2255R:A -> A2256R:G: adjacent_5p upward } 0 17 {A2256R:G -> A2255R:A: adjacent_3p downward } 0 18 {A2256R:G -> A2257R:G: adjacent_5p upward } 0 19 {A2257R:G -> A2256R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2245R:C 0 1 A2246R:U 0 2 A2247R:C 0 3 A2248R:C 0 4 A2253R:G 0 5 A2254R:G 0 6 A2255R:A 0 7 A2256R:G 0 [Edges] 0 {A2245R:C -> A2246R:U: adjacent_5p upward } 0 1 {A2246R:U -> A2245R:C: adjacent_3p downward } 0 2 {A2245R:C -> A2256R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2256R:G -> A2245R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2246R:U -> A2247R:C: adjacent_5p upward } 0 5 {A2247R:C -> A2246R:U: adjacent_3p downward } 0 6 {A2246R:U -> A2255R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A2255R:A -> A2246R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A2247R:C -> A2248R:C: adjacent_5p upward } 0 9 {A2248R:C -> A2247R:C: adjacent_3p downward } 0 10 {A2247R:C -> A2254R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2254R:G -> A2247R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2248R:C -> A2253R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 13 {A2253R:G -> A2248R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 14 {A2253R:G -> A2254R:G: adjacent_5p upward } 0 15 {A2254R:G -> A2253R:G: adjacent_3p downward } 0 16 {A2254R:G -> A2255R:A: adjacent_5p upward } 0 17 {A2255R:A -> A2254R:G: adjacent_3p downward } 0 18 {A2255R:A -> A2256R:G: adjacent_5p upward } 0 19 {A2256R:G -> A2255R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2246R:U 0 1 A2247R:C 0 2 A2248R:C 0 3 A2249R:G 0 4 A2252R:A 0 5 A2253R:G 0 6 A2254R:G 0 7 A2255R:A 0 [Edges] 0 {A2246R:U -> A2247R:C: adjacent_5p upward } 0 1 {A2247R:C -> A2246R:U: adjacent_3p downward } 0 2 {A2246R:U -> A2255R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A2255R:A -> A2246R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A2247R:C -> A2248R:C: adjacent_5p upward } 0 5 {A2248R:C -> A2247R:C: adjacent_3p downward } 0 6 {A2247R:C -> A2254R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2254R:G -> A2247R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2248R:C -> A2249R:G: adjacent_5p upward } 0 9 {A2249R:G -> A2248R:C: adjacent_3p downward } 0 10 {A2248R:C -> A2253R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {A2253R:G -> A2248R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {A2249R:G -> A2252R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {A2252R:A -> A2249R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {A2249R:G -> A2253R:G: outward } 0 15 {A2253R:G -> A2249R:G: outward } 0 16 {A2252R:A -> A2253R:G: adjacent_5p upward } 0 17 {A2253R:G -> A2252R:A: adjacent_3p downward } 0 18 {A2253R:G -> A2254R:G: adjacent_5p upward } 0 19 {A2254R:G -> A2253R:G: adjacent_3p downward } 0 20 {A2254R:G -> A2255R:A: adjacent_5p upward } 0 21 {A2255R:A -> A2254R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2293R:G 0 1 A2294R:C 0 2 A2295R:G 0 3 A2296R:C 0 4 A2312R:G 0 5 A2313R:C 0 6 A2314R:G 0 7 A2315R:C 0 [Edges] 0 {A2293R:G -> A2294R:C: adjacent_5p upward } 0 1 {A2294R:C -> A2293R:G: adjacent_3p downward } 0 2 {A2293R:G -> A2315R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2315R:C -> A2293R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2294R:C -> A2295R:G: adjacent_5p } 0 5 {A2295R:G -> A2294R:C: adjacent_3p } 0 6 {A2294R:C -> A2314R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2314R:G -> A2294R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2295R:G -> A2296R:C: adjacent_5p upward } 0 9 {A2296R:C -> A2295R:G: adjacent_3p downward } 0 10 {A2295R:G -> A2313R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2313R:C -> A2295R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2295R:G -> A2314R:G: outward } 0 13 {A2314R:G -> A2295R:G: outward } 0 14 {A2296R:C -> A2312R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A2312R:G -> A2296R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A2312R:G -> A2313R:C: adjacent_5p upward } 0 17 {A2313R:C -> A2312R:G: adjacent_3p downward } 0 18 {A2313R:C -> A2314R:G: adjacent_5p } 0 19 {A2314R:G -> A2313R:C: adjacent_3p } 0 20 {A2314R:G -> A2315R:C: adjacent_5p upward } 0 21 {A2315R:C -> A2314R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2294R:C 0 1 A2295R:G 0 2 A2296R:C 0 3 A2297R:U 0 4 A2311R:A 0 5 A2312R:G 0 6 A2313R:C 0 7 A2314R:G 0 [Edges] 0 {A2294R:C -> A2295R:G: adjacent_5p } 0 1 {A2295R:G -> A2294R:C: adjacent_3p } 0 2 {A2294R:C -> A2314R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2314R:G -> A2294R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2295R:G -> A2296R:C: adjacent_5p upward } 0 5 {A2296R:C -> A2295R:G: adjacent_3p downward } 0 6 {A2295R:G -> A2313R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2313R:C -> A2295R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2295R:G -> A2314R:G: outward } 0 9 {A2314R:G -> A2295R:G: outward } 0 10 {A2296R:C -> A2297R:U: adjacent_5p upward } 0 11 {A2297R:U -> A2296R:C: adjacent_3p downward } 0 12 {A2296R:C -> A2312R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2312R:G -> A2296R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2297R:U -> A2311R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A2311R:A -> A2297R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A2311R:A -> A2312R:G: adjacent_5p upward } 0 17 {A2312R:G -> A2311R:A: adjacent_3p downward } 0 18 {A2312R:G -> A2313R:C: adjacent_5p upward } 0 19 {A2313R:C -> A2312R:G: adjacent_3p downward } 0 20 {A2313R:C -> A2314R:G: adjacent_5p } 0 21 {A2314R:G -> A2313R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A2295R:G 0 1 A2296R:C 0 2 A2297R:U 0 3 A2298R:C 0 4 A2310R:G 0 5 A2311R:A 0 6 A2312R:G 0 7 A2313R:C 0 [Edges] 0 {A2295R:G -> A2296R:C: adjacent_5p upward } 0 1 {A2296R:C -> A2295R:G: adjacent_3p downward } 0 2 {A2295R:G -> A2313R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2313R:C -> A2295R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2296R:C -> A2297R:U: adjacent_5p upward } 0 5 {A2297R:U -> A2296R:C: adjacent_3p downward } 0 6 {A2296R:C -> A2312R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2312R:G -> A2296R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2297R:U -> A2298R:C: adjacent_5p upward } 0 9 {A2298R:C -> A2297R:U: adjacent_3p downward } 0 10 {A2297R:U -> A2311R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A2311R:A -> A2297R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A2298R:C -> A2310R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2310R:G -> A2298R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2310R:G -> A2311R:A: adjacent_5p upward } 0 15 {A2311R:A -> A2310R:G: adjacent_3p downward } 0 16 {A2311R:A -> A2312R:G: adjacent_5p upward } 0 17 {A2312R:G -> A2311R:A: adjacent_3p downward } 0 18 {A2312R:G -> A2313R:C: adjacent_5p upward } 0 19 {A2313R:C -> A2312R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2323R:G 0 1 A2324R:G 0 2 A2325R:C 0 3 A2326R:U 0 4 A2374R:A 0 5 A2375R:G 0 6 A2376R:C 0 7 A2377R:U 0 [Edges] 0 {A2323R:G -> A2324R:G: adjacent_5p upward } 0 1 {A2324R:G -> A2323R:G: adjacent_3p downward } 0 2 {A2323R:G -> A2377R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A2377R:U -> A2323R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A2324R:G -> A2325R:C: adjacent_5p upward } 0 5 {A2325R:C -> A2324R:G: adjacent_3p downward } 0 6 {A2324R:G -> A2376R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2376R:C -> A2324R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2325R:C -> A2326R:U: adjacent_5p upward } 0 9 {A2326R:U -> A2325R:C: adjacent_3p downward } 0 10 {A2325R:C -> A2375R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2375R:G -> A2325R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2326R:U -> A2374R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A2374R:A -> A2326R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A2374R:A -> A2375R:G: adjacent_5p upward } 0 15 {A2375R:G -> A2374R:A: adjacent_3p downward } 0 16 {A2375R:G -> A2376R:C: adjacent_5p upward } 0 17 {A2376R:C -> A2375R:G: adjacent_3p downward } 0 18 {A2376R:C -> A2377R:U: adjacent_5p upward } 0 19 {A2377R:U -> A2376R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2324R:G 0 1 A2325R:C 0 2 A2326R:U 0 3 A2327R:A 0 4 A2373R:U 0 5 A2374R:A 0 6 A2375R:G 0 7 A2376R:C 0 [Edges] 0 {A2324R:G -> A2325R:C: adjacent_5p upward } 0 1 {A2325R:C -> A2324R:G: adjacent_3p downward } 0 2 {A2324R:G -> A2376R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2376R:C -> A2324R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2325R:C -> A2326R:U: adjacent_5p upward } 0 5 {A2326R:U -> A2325R:C: adjacent_3p downward } 0 6 {A2325R:C -> A2375R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2375R:G -> A2325R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2326R:U -> A2327R:A: adjacent_5p upward } 0 9 {A2327R:A -> A2326R:U: adjacent_3p downward } 0 10 {A2326R:U -> A2374R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A2374R:A -> A2326R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A2327R:A -> A2373R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A2373R:U -> A2327R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A2327R:A -> A2374R:A: outward } 0 15 {A2374R:A -> A2327R:A: outward } 0 16 {A2373R:U -> A2374R:A: adjacent_5p upward } 0 17 {A2374R:A -> A2373R:U: adjacent_3p downward } 0 18 {A2374R:A -> A2375R:G: adjacent_5p upward } 0 19 {A2375R:G -> A2374R:A: adjacent_3p downward } 0 20 {A2375R:G -> A2376R:C: adjacent_5p upward } 0 21 {A2376R:C -> A2375R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2325R:C 0 1 A2326R:U 0 2 A2327R:A 0 3 A2328R:U 0 4 A2372R:A 0 5 A2373R:U 0 6 A2374R:A 0 7 A2375R:G 0 [Edges] 0 {A2325R:C -> A2326R:U: adjacent_5p upward } 0 1 {A2326R:U -> A2325R:C: adjacent_3p downward } 0 2 {A2325R:C -> A2375R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2375R:G -> A2325R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2326R:U -> A2327R:A: adjacent_5p upward } 0 5 {A2327R:A -> A2326R:U: adjacent_3p downward } 0 6 {A2326R:U -> A2374R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A2374R:A -> A2326R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A2327R:A -> A2328R:U: adjacent_5p upward } 0 9 {A2328R:U -> A2327R:A: adjacent_3p downward } 0 10 {A2327R:A -> A2373R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A2373R:U -> A2327R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A2327R:A -> A2374R:A: outward } 0 13 {A2374R:A -> A2327R:A: outward } 0 14 {A2328R:U -> A2372R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A2372R:A -> A2328R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A2372R:A -> A2373R:U: adjacent_5p upward } 0 17 {A2373R:U -> A2372R:A: adjacent_3p downward } 0 18 {A2373R:U -> A2374R:A: adjacent_5p upward } 0 19 {A2374R:A -> A2373R:U: adjacent_3p downward } 0 20 {A2374R:A -> A2375R:G: adjacent_5p upward } 0 21 {A2375R:G -> A2374R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2326R:U 0 1 A2327R:A 0 2 A2328R:U 0 3 A2329R:C 0 4 A2371R:G 0 5 A2372R:A 0 6 A2373R:U 0 7 A2374R:A 0 [Edges] 0 {A2326R:U -> A2327R:A: adjacent_5p upward } 0 1 {A2327R:A -> A2326R:U: adjacent_3p downward } 0 2 {A2326R:U -> A2374R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A2374R:A -> A2326R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A2327R:A -> A2328R:U: adjacent_5p upward } 0 5 {A2328R:U -> A2327R:A: adjacent_3p downward } 0 6 {A2327R:A -> A2373R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A2373R:U -> A2327R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A2327R:A -> A2374R:A: outward } 0 9 {A2374R:A -> A2327R:A: outward } 0 10 {A2328R:U -> A2329R:C: adjacent_5p upward } 0 11 {A2329R:C -> A2328R:U: adjacent_3p downward } 0 12 {A2328R:U -> A2372R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A2372R:A -> A2328R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A2329R:C -> A2371R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A2371R:G -> A2329R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A2371R:G -> A2372R:A: adjacent_5p upward } 0 17 {A2372R:A -> A2371R:G: adjacent_3p downward } 0 18 {A2372R:A -> A2373R:U: adjacent_5p upward } 0 19 {A2373R:U -> A2372R:A: adjacent_3p downward } 0 20 {A2373R:U -> A2374R:A: adjacent_5p upward } 0 21 {A2374R:A -> A2373R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A2332R:A 0 1 A2333R:G 0 2 A2334R:C 0 3 A2335R:C 0 4 A2349R:G 0 5 A2350R:G 0 6 A2351R:C 0 7 A2352R:G 0 [Edges] 0 {A2332R:A -> A2333R:G: adjacent_5p upward } 0 1 {A2333R:G -> A2332R:A: adjacent_3p downward } 0 2 {A2332R:A -> A2352R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A2352R:G -> A2332R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A2333R:G -> A2334R:C: adjacent_5p upward } 0 5 {A2334R:C -> A2333R:G: adjacent_3p downward } 0 6 {A2333R:G -> A2351R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2351R:C -> A2333R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2334R:C -> A2335R:C: adjacent_5p upward } 0 9 {A2335R:C -> A2334R:C: adjacent_3p downward } 0 10 {A2334R:C -> A2350R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2350R:G -> A2334R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2335R:C -> A2349R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2349R:G -> A2335R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2349R:G -> A2350R:G: adjacent_5p upward } 0 15 {A2350R:G -> A2349R:G: adjacent_3p downward } 0 16 {A2350R:G -> A2351R:C: adjacent_5p upward } 0 17 {A2351R:C -> A2350R:G: adjacent_3p downward } 0 18 {A2351R:C -> A2352R:G: adjacent_5p upward } 0 19 {A2352R:G -> A2351R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2333R:G 0 1 A2334R:C 0 2 A2335R:C 0 3 A2336R:G 0 4 A2348R:C 0 5 A2349R:G 0 6 A2350R:G 0 7 A2351R:C 0 [Edges] 0 {A2333R:G -> A2334R:C: adjacent_5p upward } 0 1 {A2334R:C -> A2333R:G: adjacent_3p downward } 0 2 {A2333R:G -> A2351R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2351R:C -> A2333R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2334R:C -> A2335R:C: adjacent_5p upward } 0 5 {A2335R:C -> A2334R:C: adjacent_3p downward } 0 6 {A2334R:C -> A2350R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2350R:G -> A2334R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2335R:C -> A2336R:G: adjacent_5p upward } 0 9 {A2336R:G -> A2335R:C: adjacent_3p downward } 0 10 {A2335R:C -> A2349R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2349R:G -> A2335R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2336R:G -> A2348R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2348R:C -> A2336R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2336R:G -> A2349R:G: outward } 0 15 {A2349R:G -> A2336R:G: outward } 0 16 {A2348R:C -> A2349R:G: adjacent_5p } 0 17 {A2349R:G -> A2348R:C: adjacent_3p } 0 18 {A2349R:G -> A2350R:G: adjacent_5p upward } 0 19 {A2350R:G -> A2349R:G: adjacent_3p downward } 0 20 {A2350R:G -> A2351R:C: adjacent_5p upward } 0 21 {A2351R:C -> A2350R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2334R:C 0 1 A2335R:C 0 2 A2336R:G 0 3 A2337R:G 0 4 A2347R:C 0 5 A2348R:C 0 6 A2349R:G 0 7 A2350R:G 0 [Edges] 0 {A2334R:C -> A2335R:C: adjacent_5p upward } 0 1 {A2335R:C -> A2334R:C: adjacent_3p downward } 0 2 {A2334R:C -> A2350R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2350R:G -> A2334R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2335R:C -> A2336R:G: adjacent_5p upward } 0 5 {A2336R:G -> A2335R:C: adjacent_3p downward } 0 6 {A2335R:C -> A2349R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2349R:G -> A2335R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2336R:G -> A2337R:G: adjacent_5p upward } 0 9 {A2337R:G -> A2336R:G: adjacent_3p downward } 0 10 {A2336R:G -> A2348R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2348R:C -> A2336R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2336R:G -> A2349R:G: outward } 0 13 {A2349R:G -> A2336R:G: outward } 0 14 {A2337R:G -> A2347R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A2347R:C -> A2337R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A2347R:C -> A2348R:C: adjacent_5p } 0 17 {A2348R:C -> A2347R:C: adjacent_3p } 0 18 {A2348R:C -> A2349R:G: adjacent_5p } 0 19 {A2349R:G -> A2348R:C: adjacent_3p } 0 20 {A2349R:G -> A2350R:G: adjacent_5p upward } 0 21 {A2350R:G -> A2349R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2335R:C 0 1 A2336R:G 0 2 A2337R:G 0 3 A2338R:G 0 4 A2346R:C 0 5 A2347R:C 0 6 A2348R:C 0 7 A2349R:G 0 [Edges] 0 {A2335R:C -> A2336R:G: adjacent_5p upward } 0 1 {A2336R:G -> A2335R:C: adjacent_3p downward } 0 2 {A2335R:C -> A2349R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2349R:G -> A2335R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2336R:G -> A2337R:G: adjacent_5p upward } 0 5 {A2337R:G -> A2336R:G: adjacent_3p downward } 0 6 {A2336R:G -> A2348R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2348R:C -> A2336R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2336R:G -> A2349R:G: outward } 0 9 {A2349R:G -> A2336R:G: outward } 0 10 {A2337R:G -> A2338R:G: adjacent_5p upward } 0 11 {A2338R:G -> A2337R:G: adjacent_3p downward } 0 12 {A2337R:G -> A2347R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2347R:C -> A2337R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2338R:G -> A2346R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A2346R:C -> A2338R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A2346R:C -> A2347R:C: adjacent_5p } 0 17 {A2347R:C -> A2346R:C: adjacent_3p } 0 18 {A2347R:C -> A2348R:C: adjacent_5p } 0 19 {A2348R:C -> A2347R:C: adjacent_3p } 0 20 {A2348R:C -> A2349R:G: adjacent_5p } 0 21 {A2349R:G -> A2348R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A2360R:C 0 1 A2361R:A 0 2 A2362R:A 0 3 A2363R:G 0 4 A2423R:C 0 5 A2424R:U 0 6 A2425R:A 0 7 A2426R:G 0 [Edges] 0 {A2360R:C -> A2361R:A: adjacent_5p } 0 1 {A2361R:A -> A2360R:C: adjacent_3p } 0 2 {A2360R:C -> A2426R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2426R:G -> A2360R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2361R:A -> A2362R:A: adjacent_5p upward } 0 5 {A2362R:A -> A2361R:A: adjacent_3p downward } 0 6 {A2361R:A -> A2425R:A: outward } 0 7 {A2425R:A -> A2361R:A: outward } 0 8 {A2362R:A -> A2363R:G: adjacent_5p upward } 0 9 {A2363R:G -> A2362R:A: adjacent_3p downward } 0 10 {A2362R:A -> A2424R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A2424R:U -> A2362R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A2363R:G -> A2423R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2423R:C -> A2363R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2423R:C -> A2424R:U: adjacent_5p upward } 0 15 {A2424R:U -> A2423R:C: adjacent_3p downward } 0 16 {A2424R:U -> A2425R:A: adjacent_5p } 0 17 {A2425R:A -> A2424R:U: adjacent_3p } 0 18 {A2425R:A -> A2426R:G: adjacent_5p } 0 19 {A2426R:G -> A2425R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2381R:C 0 1 A2382R:A 0 2 A2383R:G 0 3 A2384R:U 0 4 A2404R:G 0 5 A2405R:C 0 6 A2406R:U 0 7 A2407R:G 0 [Edges] 0 {A2381R:C -> A2382R:A: adjacent_5p } 0 1 {A2382R:A -> A2381R:C: adjacent_3p } 0 2 {A2381R:C -> A2407R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2407R:G -> A2381R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2382R:A -> A2383R:G: adjacent_5p upward } 0 5 {A2383R:G -> A2382R:A: adjacent_3p downward } 0 6 {A2382R:A -> A2406R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A2406R:U -> A2382R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A2382R:A -> A2407R:G: outward } 0 9 {A2407R:G -> A2382R:A: outward } 0 10 {A2383R:G -> A2384R:U: adjacent_5p upward } 0 11 {A2384R:U -> A2383R:G: adjacent_3p downward } 0 12 {A2383R:G -> A2405R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2405R:C -> A2383R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2384R:U -> A2404R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A2404R:G -> A2384R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A2404R:G -> A2405R:C: adjacent_5p upward } 0 17 {A2405R:C -> A2404R:G: adjacent_3p downward } 0 18 {A2405R:C -> A2406R:U: adjacent_5p upward } 0 19 {A2406R:U -> A2405R:C: adjacent_3p downward } 0 20 {A2406R:U -> A2407R:G: adjacent_5p } 0 21 {A2407R:G -> A2406R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A2382R:A 0 1 A2383R:G 0 2 A2384R:U 0 3 A2385R:G 0 4 A2403R:C 0 5 A2404R:G 0 6 A2405R:C 0 7 A2406R:U 0 [Edges] 0 {A2382R:A -> A2383R:G: adjacent_5p upward } 0 1 {A2383R:G -> A2382R:A: adjacent_3p downward } 0 2 {A2382R:A -> A2406R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A2406R:U -> A2382R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A2383R:G -> A2384R:U: adjacent_5p upward } 0 5 {A2384R:U -> A2383R:G: adjacent_3p downward } 0 6 {A2383R:G -> A2405R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2405R:C -> A2383R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2384R:U -> A2385R:G: adjacent_5p } 0 9 {A2385R:G -> A2384R:U: adjacent_3p } 0 10 {A2384R:U -> A2404R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A2404R:G -> A2384R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A2385R:G -> A2403R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2403R:C -> A2385R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2385R:G -> A2404R:G: outward } 0 15 {A2404R:G -> A2385R:G: outward } 0 16 {A2403R:C -> A2404R:G: adjacent_5p } 0 17 {A2404R:G -> A2403R:C: adjacent_3p } 0 18 {A2404R:G -> A2405R:C: adjacent_5p upward } 0 19 {A2405R:C -> A2404R:G: adjacent_3p downward } 0 20 {A2405R:C -> A2406R:U: adjacent_5p upward } 0 21 {A2406R:U -> A2405R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2383R:G 0 1 A2384R:U 0 2 A2385R:G 0 3 A2386R:U 0 4 A2402R:A 0 5 A2403R:C 0 6 A2404R:G 0 7 A2405R:C 0 [Edges] 0 {A2383R:G -> A2384R:U: adjacent_5p upward } 0 1 {A2384R:U -> A2383R:G: adjacent_3p downward } 0 2 {A2383R:G -> A2405R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2405R:C -> A2383R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2384R:U -> A2385R:G: adjacent_5p } 0 5 {A2385R:G -> A2384R:U: adjacent_3p } 0 6 {A2384R:U -> A2404R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A2404R:G -> A2384R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A2385R:G -> A2386R:U: adjacent_5p upward } 0 9 {A2386R:U -> A2385R:G: adjacent_3p downward } 0 10 {A2385R:G -> A2403R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2403R:C -> A2385R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2385R:G -> A2404R:G: outward } 0 13 {A2404R:G -> A2385R:G: outward } 0 14 {A2386R:U -> A2402R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A2402R:A -> A2386R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A2402R:A -> A2403R:C: adjacent_5p upward } 0 17 {A2403R:C -> A2402R:A: adjacent_3p downward } 0 18 {A2403R:C -> A2404R:G: adjacent_5p } 0 19 {A2404R:G -> A2403R:C: adjacent_3p } 0 20 {A2404R:G -> A2405R:C: adjacent_5p upward } 0 21 {A2405R:C -> A2404R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2384R:U 0 1 A2385R:G 0 2 A2386R:U 0 3 A2387R:U 0 4 A2401R:A 0 5 A2402R:A 0 6 A2403R:C 0 7 A2404R:G 0 [Edges] 0 {A2384R:U -> A2385R:G: adjacent_5p } 0 1 {A2385R:G -> A2384R:U: adjacent_3p } 0 2 {A2384R:U -> A2404R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A2404R:G -> A2384R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A2385R:G -> A2386R:U: adjacent_5p upward } 0 5 {A2386R:U -> A2385R:G: adjacent_3p downward } 0 6 {A2385R:G -> A2403R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2403R:C -> A2385R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2385R:G -> A2404R:G: outward } 0 9 {A2404R:G -> A2385R:G: outward } 0 10 {A2386R:U -> A2387R:U: adjacent_5p upward } 0 11 {A2387R:U -> A2386R:U: adjacent_3p downward } 0 12 {A2386R:U -> A2402R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A2402R:A -> A2386R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A2387R:U -> A2401R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A2401R:A -> A2387R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A2401R:A -> A2402R:A: adjacent_5p upward } 0 17 {A2402R:A -> A2401R:A: adjacent_3p downward } 0 18 {A2402R:A -> A2403R:C: adjacent_5p upward } 0 19 {A2403R:C -> A2402R:A: adjacent_3p downward } 0 20 {A2403R:C -> A2404R:G: adjacent_5p } 0 21 {A2404R:G -> A2403R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A2385R:G 0 1 A2386R:U 0 2 A2387R:U 0 3 A2388R:C 0 4 A2400R:G 0 5 A2401R:A 0 6 A2402R:A 0 7 A2403R:C 0 [Edges] 0 {A2385R:G -> A2386R:U: adjacent_5p upward } 0 1 {A2386R:U -> A2385R:G: adjacent_3p downward } 0 2 {A2385R:G -> A2403R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2403R:C -> A2385R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2386R:U -> A2387R:U: adjacent_5p upward } 0 5 {A2387R:U -> A2386R:U: adjacent_3p downward } 0 6 {A2386R:U -> A2402R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A2402R:A -> A2386R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A2387R:U -> A2388R:C: adjacent_5p upward } 0 9 {A2388R:C -> A2387R:U: adjacent_3p downward } 0 10 {A2387R:U -> A2401R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A2401R:A -> A2387R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A2388R:C -> A2400R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2400R:G -> A2388R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2400R:G -> A2401R:A: adjacent_5p upward } 0 15 {A2401R:A -> A2400R:G: adjacent_3p downward } 0 16 {A2401R:A -> A2402R:A: adjacent_5p upward } 0 17 {A2402R:A -> A2401R:A: adjacent_3p downward } 0 18 {A2402R:A -> A2403R:C: adjacent_5p upward } 0 19 {A2403R:C -> A2402R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2386R:U 0 1 A2387R:U 0 2 A2388R:C 0 3 A2389R:U 0 4 A2399R:G 0 5 A2400R:G 0 6 A2401R:A 0 7 A2402R:A 0 [Edges] 0 {A2386R:U -> A2387R:U: adjacent_5p upward } 0 1 {A2387R:U -> A2386R:U: adjacent_3p downward } 0 2 {A2386R:U -> A2402R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A2402R:A -> A2386R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A2387R:U -> A2388R:C: adjacent_5p upward } 0 5 {A2388R:C -> A2387R:U: adjacent_3p downward } 0 6 {A2387R:U -> A2401R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A2401R:A -> A2387R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A2388R:C -> A2389R:U: adjacent_5p upward } 0 9 {A2389R:U -> A2388R:C: adjacent_3p downward } 0 10 {A2388R:C -> A2400R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2400R:G -> A2388R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2389R:U -> A2399R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A2399R:G -> A2389R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A2399R:G -> A2400R:G: adjacent_5p upward } 0 15 {A2400R:G -> A2399R:G: adjacent_3p downward } 0 16 {A2400R:G -> A2401R:A: adjacent_5p upward } 0 17 {A2401R:A -> A2400R:G: adjacent_3p downward } 0 18 {A2401R:A -> A2402R:A: adjacent_5p upward } 0 19 {A2402R:A -> A2401R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2387R:U 0 1 A2388R:C 0 2 A2389R:U 0 3 A2390R:U 0 4 A2398R:A 0 5 A2399R:G 0 6 A2400R:G 0 7 A2401R:A 0 [Edges] 0 {A2387R:U -> A2388R:C: adjacent_5p upward } 0 1 {A2388R:C -> A2387R:U: adjacent_3p downward } 0 2 {A2387R:U -> A2401R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A2401R:A -> A2387R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A2388R:C -> A2389R:U: adjacent_5p upward } 0 5 {A2389R:U -> A2388R:C: adjacent_3p downward } 0 6 {A2388R:C -> A2400R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2400R:G -> A2388R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2389R:U -> A2390R:U: adjacent_5p upward } 0 9 {A2390R:U -> A2389R:U: adjacent_3p downward } 0 10 {A2389R:U -> A2399R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A2399R:G -> A2389R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A2390R:U -> A2398R:A: pairing antiparallel trans one_hbond 45 Ss/Hw } 0 13 {A2398R:A -> A2390R:U: pairing antiparallel trans one_hbond 45 Hw/Ss } 0 14 {A2398R:A -> A2399R:G: adjacent_5p upward } 0 15 {A2399R:G -> A2398R:A: adjacent_3p downward } 0 16 {A2399R:G -> A2400R:G: adjacent_5p upward } 0 17 {A2400R:G -> A2399R:G: adjacent_3p downward } 0 18 {A2400R:G -> A2401R:A: adjacent_5p upward } 0 19 {A2401R:A -> A2400R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2388R:C 0 1 A2389R:U 0 2 A2390R:U 0 3 A2391R:C 0 4 A2397R:G 0 5 A2398R:A 0 6 A2399R:G 0 7 A2400R:G 0 [Edges] 0 {A2388R:C -> A2389R:U: adjacent_5p upward } 0 1 {A2389R:U -> A2388R:C: adjacent_3p downward } 0 2 {A2388R:C -> A2400R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2400R:G -> A2388R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2389R:U -> A2390R:U: adjacent_5p upward } 0 5 {A2390R:U -> A2389R:U: adjacent_3p downward } 0 6 {A2389R:U -> A2399R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A2399R:G -> A2389R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A2390R:U -> A2391R:C: adjacent_5p inward } 0 9 {A2391R:C -> A2390R:U: adjacent_3p inward } 0 10 {A2390R:U -> A2398R:A: pairing antiparallel trans one_hbond 45 Ss/Hw } 0 11 {A2398R:A -> A2390R:U: pairing antiparallel trans one_hbond 45 Hw/Ss } 0 12 {A2391R:C -> A2397R:G: pairing parallel trans Hh/Hh } 0 13 {A2397R:G -> A2391R:C: pairing parallel trans Hh/Hh } 0 14 {A2397R:G -> A2398R:A: adjacent_5p upward } 0 15 {A2398R:A -> A2397R:G: adjacent_3p downward } 0 16 {A2398R:A -> A2399R:G: adjacent_5p upward } 0 17 {A2399R:G -> A2398R:A: adjacent_3p downward } 0 18 {A2399R:G -> A2400R:G: adjacent_5p upward } 0 19 {A2400R:G -> A2399R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2409R:C 0 1 A2410R:G 0 2 A2411R:C 0 3 A2412R:G 0 4 A2415R:A 0 5 A2416R:G 0 6 A2417R:C 0 7 A2418R:G 0 [Edges] 0 {A2409R:C -> A2410R:G: adjacent_5p upward } 0 1 {A2410R:G -> A2409R:C: adjacent_3p downward } 0 2 {A2409R:C -> A2418R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2418R:G -> A2409R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2410R:G -> A2411R:C: adjacent_5p upward } 0 5 {A2411R:C -> A2410R:G: adjacent_3p downward } 0 6 {A2410R:G -> A2417R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2417R:C -> A2410R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2410R:G -> A2418R:G: outward } 0 9 {A2418R:G -> A2410R:G: outward } 0 10 {A2411R:C -> A2412R:G: adjacent_5p upward } 0 11 {A2412R:G -> A2411R:C: adjacent_3p downward } 0 12 {A2411R:C -> A2416R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2416R:G -> A2411R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2412R:G -> A2415R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 15 {A2415R:A -> A2412R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 16 {A2412R:G -> A2416R:G: outward } 0 17 {A2416R:G -> A2412R:G: outward } 0 18 {A2415R:A -> A2416R:G: adjacent_5p } 0 19 {A2416R:G -> A2415R:A: adjacent_3p } 0 20 {A2416R:G -> A2417R:C: adjacent_5p upward } 0 21 {A2417R:C -> A2416R:G: adjacent_3p downward } 0 22 {A2417R:C -> A2418R:G: adjacent_5p upward } 0 23 {A2418R:G -> A2417R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A2432R:C 0 1 A2433R:A 0 2 A2434R:A 0 3 A2435R:U 0 4 A2456R:A 0 5 A2457R:U 0 6 A2458R:U 0 7 A2459R:G 0 [Edges] 0 {A2432R:C -> A2433R:A: adjacent_5p } 0 1 {A2433R:A -> A2432R:C: adjacent_3p } 0 2 {A2432R:C -> A2459R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2459R:G -> A2432R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2433R:A -> A2434R:A: adjacent_5p upward } 0 5 {A2434R:A -> A2433R:A: adjacent_3p downward } 0 6 {A2433R:A -> A2458R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A2458R:U -> A2433R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A2433R:A -> A2459R:G: outward } 0 9 {A2459R:G -> A2433R:A: outward } 0 10 {A2434R:A -> A2435R:U: adjacent_5p upward } 0 11 {A2435R:U -> A2434R:A: adjacent_3p downward } 0 12 {A2434R:A -> A2457R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A2457R:U -> A2434R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A2435R:U -> A2456R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A2456R:A -> A2435R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A2456R:A -> A2457R:U: adjacent_5p upward } 0 17 {A2457R:U -> A2456R:A: adjacent_3p downward } 0 18 {A2457R:U -> A2458R:U: adjacent_5p upward } 0 19 {A2458R:U -> A2457R:U: adjacent_3p downward } 0 20 {A2458R:U -> A2459R:G: adjacent_5p } 0 21 {A2459R:G -> A2458R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A2433R:A 0 1 A2434R:A 0 2 A2435R:U 0 3 A2436R:U 0 4 A2455R:A 0 5 A2456R:A 0 6 A2457R:U 0 7 A2458R:U 0 [Edges] 0 {A2433R:A -> A2434R:A: adjacent_5p upward } 0 1 {A2434R:A -> A2433R:A: adjacent_3p downward } 0 2 {A2433R:A -> A2458R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A2458R:U -> A2433R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A2434R:A -> A2435R:U: adjacent_5p upward } 0 5 {A2435R:U -> A2434R:A: adjacent_3p downward } 0 6 {A2434R:A -> A2457R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A2457R:U -> A2434R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A2435R:U -> A2436R:U: adjacent_5p } 0 9 {A2436R:U -> A2435R:U: adjacent_3p } 0 10 {A2435R:U -> A2456R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A2456R:A -> A2435R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A2436R:U -> A2455R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A2455R:A -> A2436R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A2455R:A -> A2456R:A: adjacent_5p upward } 0 15 {A2456R:A -> A2455R:A: adjacent_3p downward } 0 16 {A2456R:A -> A2457R:U: adjacent_5p upward } 0 17 {A2457R:U -> A2456R:A: adjacent_3p downward } 0 18 {A2457R:U -> A2458R:U: adjacent_5p upward } 0 19 {A2458R:U -> A2457R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2438R:G 0 1 A2439R:C 0 2 A2440R:C 0 3 A2441R:U 0 4 A2451R:G 0 5 A2452R:G 0 6 A2453R:G 0 7 A2454R:C 0 [Edges] 0 {A2438R:G -> A2439R:C: adjacent_5p upward } 0 1 {A2439R:C -> A2438R:G: adjacent_3p downward } 0 2 {A2438R:G -> A2454R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2454R:C -> A2438R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2439R:C -> A2440R:C: adjacent_5p } 0 5 {A2440R:C -> A2439R:C: adjacent_3p } 0 6 {A2439R:C -> A2453R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2453R:G -> A2439R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2440R:C -> A2441R:U: adjacent_5p upward } 0 9 {A2441R:U -> A2440R:C: adjacent_3p downward } 0 10 {A2440R:C -> A2452R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2452R:G -> A2440R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2440R:C -> A2453R:G: outward } 0 13 {A2453R:G -> A2440R:C: outward } 0 14 {A2441R:U -> A2451R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A2451R:G -> A2441R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A2451R:G -> A2452R:G: adjacent_5p upward } 0 17 {A2452R:G -> A2451R:G: adjacent_3p downward } 0 18 {A2452R:G -> A2453R:G: adjacent_5p upward } 0 19 {A2453R:G -> A2452R:G: adjacent_3p downward } 0 20 {A2453R:G -> A2454R:C: adjacent_5p upward } 0 21 {A2454R:C -> A2453R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2439R:C 0 1 A2440R:C 0 2 A2441R:U 0 3 A2442R:G 0 4 A2450R:C 0 5 A2451R:G 0 6 A2452R:G 0 7 A2453R:G 0 [Edges] 0 {A2439R:C -> A2440R:C: adjacent_5p } 0 1 {A2440R:C -> A2439R:C: adjacent_3p } 0 2 {A2439R:C -> A2453R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2453R:G -> A2439R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2440R:C -> A2441R:U: adjacent_5p upward } 0 5 {A2441R:U -> A2440R:C: adjacent_3p downward } 0 6 {A2440R:C -> A2452R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2452R:G -> A2440R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2440R:C -> A2453R:G: outward } 0 9 {A2453R:G -> A2440R:C: outward } 0 10 {A2441R:U -> A2442R:G: adjacent_5p } 0 11 {A2442R:G -> A2441R:U: adjacent_3p } 0 12 {A2441R:U -> A2451R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A2451R:G -> A2441R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A2442R:G -> A2450R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A2450R:C -> A2442R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A2442R:G -> A2451R:G: outward } 0 17 {A2451R:G -> A2442R:G: outward } 0 18 {A2450R:C -> A2451R:G: adjacent_5p } 0 19 {A2451R:G -> A2450R:C: adjacent_3p } 0 20 {A2451R:G -> A2452R:G: adjacent_5p upward } 0 21 {A2452R:G -> A2451R:G: adjacent_3p downward } 0 22 {A2452R:G -> A2453R:G: adjacent_5p upward } 0 23 {A2453R:G -> A2452R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A2495R:U 0 1 A2496R:C 0 2 A2497R:A 0 3 A2498R:C 0 4 A2522R:G 0 5 A2523R:U 0 6 A2524R:G 0 7 A2525R:G 0 [Edges] 0 {A2495R:U -> A2496R:C: adjacent_5p upward } 0 1 {A2496R:C -> A2495R:U: adjacent_3p downward } 0 2 {A2495R:U -> A2525R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 3 {A2525R:G -> A2495R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 4 {A2496R:C -> A2497R:A: adjacent_5p upward } 0 5 {A2497R:A -> A2496R:C: adjacent_3p downward } 0 6 {A2496R:C -> A2524R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2524R:G -> A2496R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2497R:A -> A2498R:C: adjacent_5p upward } 0 9 {A2498R:C -> A2497R:A: adjacent_3p downward } 0 10 {A2497R:A -> A2523R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A2523R:U -> A2497R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A2497R:A -> A2524R:G: outward } 0 13 {A2524R:G -> A2497R:A: outward } 0 14 {A2498R:C -> A2522R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A2522R:G -> A2498R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A2522R:G -> A2523R:U: adjacent_5p upward } 0 17 {A2523R:U -> A2522R:G: adjacent_3p downward } 0 18 {A2523R:U -> A2524R:G: adjacent_5p upward } 0 19 {A2524R:G -> A2523R:U: adjacent_3p downward } 0 20 {A2524R:G -> A2525R:G: adjacent_5p upward } 0 21 {A2525R:G -> A2524R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2496R:C 0 1 A2497R:A 0 2 A2498R:C 0 3 A2499R:U 0 4 A2521R:A 0 5 A2522R:G 0 6 A2523R:U 0 7 A2524R:G 0 [Edges] 0 {A2496R:C -> A2497R:A: adjacent_5p upward } 0 1 {A2497R:A -> A2496R:C: adjacent_3p downward } 0 2 {A2496R:C -> A2524R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2524R:G -> A2496R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2497R:A -> A2498R:C: adjacent_5p upward } 0 5 {A2498R:C -> A2497R:A: adjacent_3p downward } 0 6 {A2497R:A -> A2523R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A2523R:U -> A2497R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A2497R:A -> A2524R:G: outward } 0 9 {A2524R:G -> A2497R:A: outward } 0 10 {A2498R:C -> A2499R:U: adjacent_5p } 0 11 {A2499R:U -> A2498R:C: adjacent_3p } 0 12 {A2498R:C -> A2522R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2522R:G -> A2498R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2499R:U -> A2521R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A2521R:A -> A2499R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A2521R:A -> A2522R:G: adjacent_5p upward } 0 17 {A2522R:G -> A2521R:A: adjacent_3p downward } 0 18 {A2522R:G -> A2523R:U: adjacent_5p upward } 0 19 {A2523R:U -> A2522R:G: adjacent_3p downward } 0 20 {A2523R:U -> A2524R:G: adjacent_5p upward } 0 21 {A2524R:G -> A2523R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A2497R:A 0 1 A2498R:C 0 2 A2499R:U 0 3 A2500R:C 0 4 A2520R:G 0 5 A2521R:A 0 6 A2522R:G 0 7 A2523R:U 0 [Edges] 0 {A2497R:A -> A2498R:C: adjacent_5p upward } 0 1 {A2498R:C -> A2497R:A: adjacent_3p downward } 0 2 {A2497R:A -> A2523R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A2523R:U -> A2497R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A2498R:C -> A2499R:U: adjacent_5p } 0 5 {A2499R:U -> A2498R:C: adjacent_3p } 0 6 {A2498R:C -> A2522R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2522R:G -> A2498R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2499R:U -> A2500R:C: adjacent_5p } 0 9 {A2500R:C -> A2499R:U: adjacent_3p } 0 10 {A2499R:U -> A2521R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A2521R:A -> A2499R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A2500R:C -> A2520R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2520R:G -> A2500R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2520R:G -> A2521R:A: adjacent_5p upward } 0 15 {A2521R:A -> A2520R:G: adjacent_3p downward } 0 16 {A2521R:A -> A2522R:G: adjacent_5p upward } 0 17 {A2522R:G -> A2521R:A: adjacent_3p downward } 0 18 {A2522R:G -> A2523R:U: adjacent_5p upward } 0 19 {A2523R:U -> A2522R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2498R:C 0 1 A2499R:U 0 2 A2500R:C 0 3 A2501R:G 0 4 A2519R:C 0 5 A2520R:G 0 6 A2521R:A 0 7 A2522R:G 0 [Edges] 0 {A2498R:C -> A2499R:U: adjacent_5p } 0 1 {A2499R:U -> A2498R:C: adjacent_3p } 0 2 {A2498R:C -> A2522R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2522R:G -> A2498R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2499R:U -> A2500R:C: adjacent_5p } 0 5 {A2500R:C -> A2499R:U: adjacent_3p } 0 6 {A2499R:U -> A2521R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A2521R:A -> A2499R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A2500R:C -> A2501R:G: adjacent_5p } 0 9 {A2501R:G -> A2500R:C: adjacent_3p } 0 10 {A2500R:C -> A2520R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2520R:G -> A2500R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2501R:G -> A2519R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2519R:C -> A2501R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2501R:G -> A2520R:G: outward } 0 15 {A2520R:G -> A2501R:G: outward } 0 16 {A2519R:C -> A2520R:G: adjacent_5p upward } 0 17 {A2520R:G -> A2519R:C: adjacent_3p downward } 0 18 {A2520R:G -> A2521R:A: adjacent_5p upward } 0 19 {A2521R:A -> A2520R:G: adjacent_3p downward } 0 20 {A2521R:A -> A2522R:G: adjacent_5p upward } 0 21 {A2522R:G -> A2521R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2501R:G 0 1 A2502R:C 0 2 A2503R:A 0 3 A2504R:A 0 4 A2516R:G 0 5 A2517R:A 0 6 A2518R:C 0 7 A2519R:C 0 [Edges] 0 {A2501R:G -> A2502R:C: adjacent_5p upward } 0 1 {A2502R:C -> A2501R:G: adjacent_3p downward } 0 2 {A2501R:G -> A2519R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2519R:C -> A2501R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2502R:C -> A2503R:A: adjacent_5p upward } 0 5 {A2503R:A -> A2502R:C: adjacent_3p downward } 0 6 {A2503R:A -> A2504R:A: adjacent_5p } 0 7 {A2504R:A -> A2503R:A: adjacent_3p } 0 8 {A2503R:A -> A2516R:G: inward } 0 9 {A2516R:G -> A2503R:A: inward } 0 10 {A2504R:A -> A2516R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {A2516R:G -> A2504R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {A2504R:A -> A2517R:A: outward } 0 13 {A2517R:A -> A2504R:A: outward } 0 14 {A2516R:G -> A2517R:A: adjacent_5p } 0 15 {A2517R:A -> A2516R:G: adjacent_3p } 0 16 {A2517R:A -> A2518R:C: adjacent_5p upward } 0 17 {A2518R:C -> A2517R:A: adjacent_3p downward } 0 18 {A2518R:C -> A2519R:C: adjacent_5p upward } 0 19 {A2519R:C -> A2518R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 8 . . . 3 . . 7 . 10 12 . . 4 . . 9 11 . 14 . . 5 . . . 13 15 . 16 . 6 . . . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2504R:A 0 1 A2505R:G 0 2 A2506R:A 0 3 A2507R:G 0 4 A2513R:A 0 5 A2514R:U 0 6 A2515R:C 0 7 A2516R:G 0 [Edges] 0 {A2504R:A -> A2505R:G: adjacent_5p upward } 0 1 {A2505R:G -> A2504R:A: adjacent_3p downward } 0 2 {A2504R:A -> A2516R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A2516R:G -> A2504R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A2505R:G -> A2506R:A: adjacent_5p upward } 0 5 {A2506R:A -> A2505R:G: adjacent_3p downward } 0 6 {A2505R:G -> A2515R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2515R:C -> A2505R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2506R:A -> A2507R:G: adjacent_5p upward } 0 9 {A2507R:G -> A2506R:A: adjacent_3p downward } 0 10 {A2506R:A -> A2514R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A2514R:U -> A2506R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A2507R:G -> A2513R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A2513R:A -> A2507R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A2513R:A -> A2514R:U: adjacent_5p upward } 0 15 {A2514R:U -> A2513R:A: adjacent_3p downward } 0 16 {A2514R:U -> A2515R:C: adjacent_5p upward } 0 17 {A2515R:C -> A2514R:U: adjacent_3p downward } 0 18 {A2515R:C -> A2516R:G: adjacent_5p upward } 0 19 {A2516R:G -> A2515R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2548R:C 0 1 A2549R:C 0 2 A2550R:U 0 3 A2551R:C 0 4 A2603R:G 0 5 A2604R:A 0 6 A2605R:G 0 7 A2606R:G 0 [Edges] 0 {A2548R:C -> A2549R:C: adjacent_5p upward } 0 1 {A2549R:C -> A2548R:C: adjacent_3p downward } 0 2 {A2548R:C -> A2606R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2606R:G -> A2548R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2549R:C -> A2550R:U: adjacent_5p upward } 0 5 {A2550R:U -> A2549R:C: adjacent_3p downward } 0 6 {A2549R:C -> A2605R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2605R:G -> A2549R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2550R:U -> A2551R:C: adjacent_5p } 0 9 {A2551R:C -> A2550R:U: adjacent_3p } 0 10 {A2550R:U -> A2604R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A2604R:A -> A2550R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A2551R:C -> A2603R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2603R:G -> A2551R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2603R:G -> A2604R:A: adjacent_5p upward } 0 15 {A2604R:A -> A2603R:G: adjacent_3p downward } 0 16 {A2604R:A -> A2605R:G: adjacent_5p upward } 0 17 {A2605R:G -> A2604R:A: adjacent_3p downward } 0 18 {A2605R:G -> A2606R:G: adjacent_5p upward } 0 19 {A2606R:G -> A2605R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2549R:C 0 1 A2550R:U 0 2 A2551R:C 0 3 A2552R:C 0 4 A2602R:G 0 5 A2603R:G 0 6 A2604R:A 0 7 A2605R:G 0 [Edges] 0 {A2549R:C -> A2550R:U: adjacent_5p upward } 0 1 {A2550R:U -> A2549R:C: adjacent_3p downward } 0 2 {A2549R:C -> A2605R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2605R:G -> A2549R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2550R:U -> A2551R:C: adjacent_5p } 0 5 {A2551R:C -> A2550R:U: adjacent_3p } 0 6 {A2550R:U -> A2604R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A2604R:A -> A2550R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A2551R:C -> A2552R:C: adjacent_5p upward } 0 9 {A2552R:C -> A2551R:C: adjacent_3p downward } 0 10 {A2551R:C -> A2603R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2603R:G -> A2551R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2552R:C -> A2602R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2602R:G -> A2552R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2602R:G -> A2603R:G: adjacent_5p upward } 0 15 {A2603R:G -> A2602R:G: adjacent_3p downward } 0 16 {A2603R:G -> A2604R:A: adjacent_5p upward } 0 17 {A2604R:A -> A2603R:G: adjacent_3p downward } 0 18 {A2604R:A -> A2605R:G: adjacent_5p upward } 0 19 {A2605R:G -> A2604R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2558R:G 0 1 A2559R:C 0 2 A2560R:C 0 3 A2561R:C 0 4 A2572R:G 0 5 A2573R:G 0 6 A2574R:G 0 7 A2575R:C 0 [Edges] 0 {A2558R:G -> A2559R:C: adjacent_5p upward } 0 1 {A2559R:C -> A2558R:G: adjacent_3p downward } 0 2 {A2558R:G -> A2575R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2575R:C -> A2558R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2559R:C -> A2560R:C: adjacent_5p } 0 5 {A2560R:C -> A2559R:C: adjacent_3p } 0 6 {A2559R:C -> A2574R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2574R:G -> A2559R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2560R:C -> A2561R:C: adjacent_5p } 0 9 {A2561R:C -> A2560R:C: adjacent_3p } 0 10 {A2560R:C -> A2573R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2573R:G -> A2560R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2561R:C -> A2572R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2572R:G -> A2561R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2572R:G -> A2573R:G: adjacent_5p upward } 0 15 {A2573R:G -> A2572R:G: adjacent_3p downward } 0 16 {A2573R:G -> A2574R:G: adjacent_5p upward } 0 17 {A2574R:G -> A2573R:G: adjacent_3p downward } 0 18 {A2574R:G -> A2575R:C: adjacent_5p upward } 0 19 {A2575R:C -> A2574R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2559R:C 0 1 A2560R:C 0 2 A2561R:C 0 3 A2562R:G 0 4 A2571R:C 0 5 A2572R:G 0 6 A2573R:G 0 7 A2574R:G 0 [Edges] 0 {A2559R:C -> A2560R:C: adjacent_5p } 0 1 {A2560R:C -> A2559R:C: adjacent_3p } 0 2 {A2559R:C -> A2574R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2574R:G -> A2559R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2560R:C -> A2561R:C: adjacent_5p } 0 5 {A2561R:C -> A2560R:C: adjacent_3p } 0 6 {A2560R:C -> A2573R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2573R:G -> A2560R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2561R:C -> A2562R:G: adjacent_5p } 0 9 {A2562R:G -> A2561R:C: adjacent_3p } 0 10 {A2561R:C -> A2572R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2572R:G -> A2561R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2562R:G -> A2571R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2571R:C -> A2562R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2562R:G -> A2572R:G: outward } 0 15 {A2572R:G -> A2562R:G: outward } 0 16 {A2571R:C -> A2572R:G: adjacent_5p upward } 0 17 {A2572R:G -> A2571R:C: adjacent_3p downward } 0 18 {A2572R:G -> A2573R:G: adjacent_5p upward } 0 19 {A2573R:G -> A2572R:G: adjacent_3p downward } 0 20 {A2573R:G -> A2574R:G: adjacent_5p upward } 0 21 {A2574R:G -> A2573R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2560R:C 0 1 A2561R:C 0 2 A2562R:G 0 3 A2563R:U 0 4 A2570R:G 0 5 A2571R:C 0 6 A2572R:G 0 7 A2573R:G 0 [Edges] 0 {A2560R:C -> A2561R:C: adjacent_5p } 0 1 {A2561R:C -> A2560R:C: adjacent_3p } 0 2 {A2560R:C -> A2573R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2573R:G -> A2560R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2561R:C -> A2562R:G: adjacent_5p } 0 5 {A2562R:G -> A2561R:C: adjacent_3p } 0 6 {A2561R:C -> A2572R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2572R:G -> A2561R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2562R:G -> A2563R:U: adjacent_5p upward } 0 9 {A2563R:U -> A2562R:G: adjacent_3p downward } 0 10 {A2562R:G -> A2571R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2571R:C -> A2562R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2562R:G -> A2572R:G: outward } 0 13 {A2572R:G -> A2562R:G: outward } 0 14 {A2563R:U -> A2570R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A2570R:G -> A2563R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A2570R:G -> A2571R:C: adjacent_5p upward } 0 17 {A2571R:C -> A2570R:G: adjacent_3p downward } 0 18 {A2571R:C -> A2572R:G: adjacent_5p upward } 0 19 {A2572R:G -> A2571R:C: adjacent_3p downward } 0 20 {A2572R:G -> A2573R:G: adjacent_5p upward } 0 21 {A2573R:G -> A2572R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2582R:G 0 1 A2583R:A 0 2 A2584R:G 0 3 A2585R:G 0 4 A2593R:C 0 5 A2594R:C 0 6 A2595R:U 0 7 A2596R:A 0 [Edges] 0 {A2582R:G -> A2583R:A: adjacent_5p upward } 0 1 {A2583R:A -> A2582R:G: adjacent_3p downward } 0 2 {A2582R:G -> A2596R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A2596R:A -> A2582R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A2583R:A -> A2584R:G: adjacent_5p upward } 0 5 {A2584R:G -> A2583R:A: adjacent_3p downward } 0 6 {A2583R:A -> A2595R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A2595R:U -> A2583R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A2583R:A -> A2596R:A: outward } 0 9 {A2596R:A -> A2583R:A: outward } 0 10 {A2584R:G -> A2585R:G: adjacent_5p upward } 0 11 {A2585R:G -> A2584R:G: adjacent_3p downward } 0 12 {A2584R:G -> A2594R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2594R:C -> A2584R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2585R:G -> A2593R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A2593R:C -> A2585R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A2593R:C -> A2594R:C: adjacent_5p upward } 0 17 {A2594R:C -> A2593R:C: adjacent_3p downward } 0 18 {A2594R:C -> A2595R:U: adjacent_5p } 0 19 {A2595R:U -> A2594R:C: adjacent_3p } 0 20 {A2595R:U -> A2596R:A: adjacent_5p upward } 0 21 {A2596R:A -> A2595R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A2583R:A 0 1 A2584R:G 0 2 A2585R:G 0 3 A2586R:U 0 4 A2592R:G 0 5 A2593R:C 0 6 A2594R:C 0 7 A2595R:U 0 [Edges] 0 {A2583R:A -> A2584R:G: adjacent_5p upward } 0 1 {A2584R:G -> A2583R:A: adjacent_3p downward } 0 2 {A2583R:A -> A2595R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A2595R:U -> A2583R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A2584R:G -> A2585R:G: adjacent_5p upward } 0 5 {A2585R:G -> A2584R:G: adjacent_3p downward } 0 6 {A2584R:G -> A2594R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2594R:C -> A2584R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2585R:G -> A2586R:U: adjacent_5p upward } 0 9 {A2586R:U -> A2585R:G: adjacent_3p downward } 0 10 {A2585R:G -> A2593R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2593R:C -> A2585R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2586R:U -> A2592R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 13 {A2592R:G -> A2586R:U: pairing antiparallel cis one_hbond Ww/Wh } 0 14 {A2592R:G -> A2593R:C: adjacent_5p upward } 0 15 {A2593R:C -> A2592R:G: adjacent_3p downward } 0 16 {A2593R:C -> A2594R:C: adjacent_5p upward } 0 17 {A2594R:C -> A2593R:C: adjacent_3p downward } 0 18 {A2594R:C -> A2595R:U: adjacent_5p } 0 19 {A2595R:U -> A2594R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2623R:G 0 1 A2624R:A 0 2 A2625R:C 0 3 A2626R:C 0 4 A2638R:G 0 5 A2639R:G 0 6 A2640R:U 0 7 A2641R:C 0 [Edges] 0 {A2623R:G -> A2624R:A: adjacent_5p upward } 0 1 {A2624R:A -> A2623R:G: adjacent_3p downward } 0 2 {A2623R:G -> A2641R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2641R:C -> A2623R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2624R:A -> A2625R:C: adjacent_5p upward } 0 5 {A2625R:C -> A2624R:A: adjacent_3p downward } 0 6 {A2624R:A -> A2640R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A2640R:U -> A2624R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A2625R:C -> A2626R:C: adjacent_5p upward } 0 9 {A2626R:C -> A2625R:C: adjacent_3p downward } 0 10 {A2626R:C -> A2638R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2638R:G -> A2626R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2638R:G -> A2639R:G: adjacent_5p upward } 0 13 {A2639R:G -> A2638R:G: adjacent_3p downward } 0 14 {A2639R:G -> A2640R:U: adjacent_5p upward } 0 15 {A2640R:U -> A2639R:G: adjacent_3p downward } 0 16 {A2640R:U -> A2641R:C: adjacent_5p } 0 17 {A2641R:C -> A2640R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:G 0 4 A10R:A 0 5 A11R:U 0 6 A12R:G 0 7 A13R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A13R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A12R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A11R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 11 {A11R:U -> A4R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 12 {A5R:G -> A10R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 13 {A10R:A -> A5R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 14 {A10R:A -> A11R:U: adjacent_5p upward } 0 15 {A11R:U -> A10R:A: adjacent_3p downward } 0 16 {A11R:U -> A12R:G: adjacent_5p upward } 0 17 {A12R:G -> A11R:U: adjacent_3p downward } 0 18 {A12R:G -> A13R:C: adjacent_5p upward } 0 19 {A13R:C -> A12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 1R:G 0 1 2R:G 0 2 3R:C 0 3 4R:G 0 4 32R:C 0 5 33R:G 0 6 34R:C 0 7 35R:C 0 [Edges] 0 {1R:G -> 2R:G: adjacent_5p } 0 1 {2R:G -> 1R:G: adjacent_3p } 0 2 {1R:G -> 35R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {35R:C -> 1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {2R:G -> 3R:C: adjacent_5p upward } 0 5 {3R:C -> 2R:G: adjacent_3p downward } 0 6 {2R:G -> 34R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {34R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {3R:C -> 4R:G: adjacent_5p } 0 9 {4R:G -> 3R:C: adjacent_3p } 0 10 {3R:C -> 33R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {33R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {4R:G -> 32R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {32R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {32R:C -> 33R:G: adjacent_5p } 0 15 {33R:G -> 32R:C: adjacent_3p } 0 16 {33R:G -> 34R:C: adjacent_5p upward } 0 17 {34R:C -> 33R:G: adjacent_3p downward } 0 18 {34R:C -> 35R:C: adjacent_5p } 0 19 {35R:C -> 34R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 2R:G 0 1 3R:C 0 2 4R:G 0 3 5R:U 0 4 31R:A 0 5 32R:C 0 6 33R:G 0 7 34R:C 0 [Edges] 0 {2R:G -> 3R:C: adjacent_5p upward } 0 1 {3R:C -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {34R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:C -> 4R:G: adjacent_5p } 0 5 {4R:G -> 3R:C: adjacent_3p } 0 6 {3R:C -> 33R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {33R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:G -> 5R:U: adjacent_5p upward } 0 9 {5R:U -> 4R:G: adjacent_3p downward } 0 10 {4R:G -> 32R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {32R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {5R:U -> 31R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {31R:A -> 5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {31R:A -> 32R:C: adjacent_5p upward } 0 15 {32R:C -> 31R:A: adjacent_3p downward } 0 16 {32R:C -> 33R:G: adjacent_5p } 0 17 {33R:G -> 32R:C: adjacent_3p } 0 18 {33R:G -> 34R:C: adjacent_5p upward } 0 19 {34R:C -> 33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 3R:C 0 1 4R:G 0 2 5R:U 0 3 6R:G 0 4 30R:C 0 5 31R:A 0 6 32R:C 0 7 33R:G 0 [Edges] 0 {3R:C -> 4R:G: adjacent_5p } 0 1 {4R:G -> 3R:C: adjacent_3p } 0 2 {3R:C -> 33R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {33R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:G -> 5R:U: adjacent_5p upward } 0 5 {5R:U -> 4R:G: adjacent_3p downward } 0 6 {4R:G -> 32R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {32R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {5R:U -> 6R:G: adjacent_5p } 0 9 {6R:G -> 5R:U: adjacent_3p } 0 10 {5R:U -> 31R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {31R:A -> 5R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {6R:G -> 30R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {30R:C -> 6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {6R:G -> 31R:A: outward } 0 15 {31R:A -> 6R:G: outward } 0 16 {30R:C -> 31R:A: adjacent_5p upward } 0 17 {31R:A -> 30R:C: adjacent_3p downward } 0 18 {31R:A -> 32R:C: adjacent_5p upward } 0 19 {32R:C -> 31R:A: adjacent_3p downward } 0 20 {32R:C -> 33R:G: adjacent_5p } 0 21 {33R:G -> 32R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 4R:G 0 1 5R:U 0 2 6R:G 0 3 7R:U 0 4 29R:A 0 5 30R:C 0 6 31R:A 0 7 32R:C 0 [Edges] 0 {4R:G -> 5R:U: adjacent_5p upward } 0 1 {5R:U -> 4R:G: adjacent_3p downward } 0 2 {4R:G -> 32R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {32R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {5R:U -> 6R:G: adjacent_5p } 0 5 {6R:G -> 5R:U: adjacent_3p } 0 6 {5R:U -> 31R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {31R:A -> 5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {6R:G -> 7R:U: adjacent_5p upward } 0 9 {7R:U -> 6R:G: adjacent_3p downward } 0 10 {6R:G -> 30R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {30R:C -> 6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {6R:G -> 31R:A: outward } 0 13 {31R:A -> 6R:G: outward } 0 14 {7R:U -> 29R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {29R:A -> 7R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {29R:A -> 30R:C: adjacent_5p upward } 0 17 {30R:C -> 29R:A: adjacent_3p downward } 0 18 {30R:C -> 31R:A: adjacent_5p upward } 0 19 {31R:A -> 30R:C: adjacent_3p downward } 0 20 {31R:A -> 32R:C: adjacent_5p upward } 0 21 {32R:C -> 31R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 5R:U 0 1 6R:G 0 2 7R:U 0 3 8R:A 0 4 28R:G 0 5 29R:A 0 6 30R:C 0 7 31R:A 0 [Edges] 0 {5R:U -> 6R:G: adjacent_5p } 0 1 {6R:G -> 5R:U: adjacent_3p } 0 2 {5R:U -> 31R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {31R:A -> 5R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {6R:G -> 7R:U: adjacent_5p upward } 0 5 {7R:U -> 6R:G: adjacent_3p downward } 0 6 {6R:G -> 30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {30R:C -> 6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {6R:G -> 31R:A: outward } 0 9 {31R:A -> 6R:G: outward } 0 10 {7R:U -> 8R:A: adjacent_5p upward } 0 11 {8R:A -> 7R:U: adjacent_3p downward } 0 12 {7R:U -> 29R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {29R:A -> 7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {8R:A -> 28R:G: pairing antiparallel cis VIII Ww/Ww } 0 15 {28R:G -> 8R:A: pairing antiparallel cis VIII Ww/Ww } 0 16 {8R:A -> 29R:A: outward } 0 17 {29R:A -> 8R:A: outward } 0 18 {28R:G -> 29R:A: adjacent_5p upward } 0 19 {29R:A -> 28R:G: adjacent_3p downward } 0 20 {29R:A -> 30R:C: adjacent_5p upward } 0 21 {30R:C -> 29R:A: adjacent_3p downward } 0 22 {30R:C -> 31R:A: adjacent_5p upward } 0 23 {31R:A -> 30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 6R:G 0 1 7R:U 0 2 8R:A 0 3 9R:G 0 4 27R:G 0 5 28R:G 0 6 29R:A 0 7 30R:C 0 [Edges] 0 {6R:G -> 7R:U: adjacent_5p upward } 0 1 {7R:U -> 6R:G: adjacent_3p downward } 0 2 {6R:G -> 30R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {30R:C -> 6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {7R:U -> 8R:A: adjacent_5p upward } 0 5 {8R:A -> 7R:U: adjacent_3p downward } 0 6 {7R:U -> 29R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {29R:A -> 7R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {8R:A -> 9R:G: adjacent_5p upward } 0 9 {9R:G -> 8R:A: adjacent_3p downward } 0 10 {8R:A -> 28R:G: pairing antiparallel cis VIII Ww/Ww } 0 11 {28R:G -> 8R:A: pairing antiparallel cis VIII Ww/Ww } 0 12 {8R:A -> 29R:A: outward } 0 13 {29R:A -> 8R:A: outward } 0 14 {9R:G -> 27R:G: pairing antiparallel cis one_hbond 115 Ws/Wh } 0 15 {27R:G -> 9R:G: pairing antiparallel cis one_hbond 115 Wh/Ws } 0 16 {27R:G -> 28R:G: adjacent_5p upward } 0 17 {28R:G -> 27R:G: adjacent_3p downward } 0 18 {28R:G -> 29R:A: adjacent_5p upward } 0 19 {29R:A -> 28R:G: adjacent_3p downward } 0 20 {29R:A -> 30R:C: adjacent_5p upward } 0 21 {30R:C -> 29R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 12R:U 0 1 13R:A 0 2 14R:U 0 3 15R:G 0 4 22R:C 0 5 23R:A 0 6 24R:G 0 7 25R:A 0 [Edges] 0 {12R:U -> 13R:A: adjacent_5p } 0 1 {13R:A -> 12R:U: adjacent_3p } 0 2 {12R:U -> 25R:A: pairing antiparallel trans XXIV Ww/Hh } 0 3 {25R:A -> 12R:U: pairing antiparallel trans XXIV Hh/Ww } 0 4 {13R:A -> 14R:U: adjacent_5p upward } 0 5 {14R:U -> 13R:A: adjacent_3p downward } 0 6 {13R:A -> 24R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {24R:G -> 13R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {13R:A -> 25R:A: outward } 0 9 {25R:A -> 13R:A: outward } 0 10 {14R:U -> 15R:G: adjacent_5p } 0 11 {15R:G -> 14R:U: adjacent_3p } 0 12 {14R:U -> 23R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {23R:A -> 14R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {15R:G -> 22R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {22R:C -> 15R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {15R:G -> 23R:A: outward } 0 17 {23R:A -> 15R:G: outward } 0 18 {22R:C -> 23R:A: adjacent_5p } 0 19 {23R:A -> 22R:C: adjacent_3p } 0 20 {23R:A -> 24R:G: adjacent_5p upward } 0 21 {24R:G -> 23R:A: adjacent_3p downward } 0 22 {24R:G -> 25R:A: adjacent_5p } 0 23 {25R:A -> 24R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 13R:A 0 1 14R:U 0 2 15R:G 0 3 16R:C 0 4 21R:G 0 5 22R:C 0 6 23R:A 0 7 24R:G 0 [Edges] 0 {13R:A -> 14R:U: adjacent_5p upward } 0 1 {14R:U -> 13R:A: adjacent_3p downward } 0 2 {13R:A -> 24R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {24R:G -> 13R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {14R:U -> 15R:G: adjacent_5p } 0 5 {15R:G -> 14R:U: adjacent_3p } 0 6 {14R:U -> 23R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {23R:A -> 14R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {15R:G -> 16R:C: adjacent_5p upward } 0 9 {16R:C -> 15R:G: adjacent_3p downward } 0 10 {15R:G -> 22R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {22R:C -> 15R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {15R:G -> 23R:A: outward } 0 13 {23R:A -> 15R:G: outward } 0 14 {16R:C -> 21R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {21R:G -> 16R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {21R:G -> 22R:C: adjacent_5p upward } 0 17 {22R:C -> 21R:G: adjacent_3p downward } 0 18 {22R:C -> 23R:A: adjacent_5p } 0 19 {23R:A -> 22R:C: adjacent_3p } 0 20 {23R:A -> 24R:G: adjacent_5p upward } 0 21 {24R:G -> 23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:C 0 2 A3R:C 0 3 A4R:G 0 4 A24R:A 0 5 A25R:G 0 6 A26R:G 0 7 A27R:C 0 [Edges] 0 {A1R:G -> A2R:C: adjacent_5p upward } 0 1 {A2R:C -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:C -> A3R:C: adjacent_5p upward } 0 5 {A3R:C -> A2R:C: adjacent_3p downward } 0 6 {A2R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A26R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:C -> A4R:G: adjacent_5p upward } 0 9 {A4R:G -> A3R:C: adjacent_3p downward } 0 10 {A3R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A25R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A24R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A24R:A -> A4R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A24R:A -> A25R:G: adjacent_5p upward } 0 15 {A25R:G -> A24R:A: adjacent_3p downward } 0 16 {A25R:G -> A26R:G: adjacent_5p upward } 0 17 {A26R:G -> A25R:G: adjacent_3p downward } 0 18 {A26R:G -> A27R:C: adjacent_5p upward } 0 19 {A27R:C -> A26R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2R:C 0 1 A3R:C 0 2 A4R:G 0 3 A5R:A 0 4 A23R:A 0 5 A24R:A 0 6 A25R:G 0 7 A26R:G 0 [Edges] 0 {A2R:C -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:C: adjacent_3p downward } 0 2 {A2R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A26R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A25R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:A: adjacent_5p inward } 0 9 {A5R:A -> A4R:G: adjacent_3p inward } 0 10 {A4R:G -> A24R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {A24R:A -> A4R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {A5R:A -> A23R:A: pairing parallel trans II Hh/Hh } 0 13 {A23R:A -> A5R:A: pairing parallel trans II Hh/Hh } 0 14 {A23R:A -> A24R:A: adjacent_5p upward } 0 15 {A24R:A -> A23R:A: adjacent_3p downward } 0 16 {A24R:A -> A25R:G: adjacent_5p upward } 0 17 {A25R:G -> A24R:A: adjacent_3p downward } 0 18 {A25R:G -> A26R:G: adjacent_5p upward } 0 19 {A26R:G -> A25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:U 0 1 A8R:A 0 2 A9R:G 0 3 A10R:U 0 4 A19R:G 0 5 A20R:C 0 6 A21R:G 0 7 A22R:A 0 [Edges] 0 {A7R:U -> A8R:A: adjacent_5p upward } 0 1 {A8R:A -> A7R:U: adjacent_3p downward } 0 2 {A7R:U -> A22R:A: pairing antiparallel trans XXIV Ww/Hh } 0 3 {A22R:A -> A7R:U: pairing antiparallel trans XXIV Hh/Ww } 0 4 {A8R:A -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:A: adjacent_3p downward } 0 6 {A8R:A -> A21R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {A21R:G -> A8R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {A8R:A -> A22R:A: outward } 0 9 {A22R:A -> A8R:A: outward } 0 10 {A9R:G -> A10R:U: adjacent_5p upward } 0 11 {A10R:U -> A9R:G: adjacent_3p downward } 0 12 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A10R:U -> A19R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A19R:G -> A10R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A19R:G -> A20R:C: adjacent_5p upward } 0 17 {A20R:C -> A19R:G: adjacent_3p downward } 0 18 {A20R:C -> A21R:G: adjacent_5p upward } 0 19 {A21R:G -> A20R:C: adjacent_3p downward } 0 20 {A21R:G -> A22R:A: adjacent_5p } 0 21 {A22R:A -> A21R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A8R:A 0 1 A9R:G 0 2 A10R:U 0 3 A11R:G 0 4 A18R:C 0 5 A19R:G 0 6 A20R:C 0 7 A21R:G 0 [Edges] 0 {A8R:A -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:A: adjacent_3p downward } 0 2 {A8R:A -> A21R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A21R:G -> A8R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A9R:G -> A10R:U: adjacent_5p upward } 0 5 {A10R:U -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:U -> A11R:G: adjacent_5p } 0 9 {A11R:G -> A10R:U: adjacent_3p } 0 10 {A10R:U -> A19R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A19R:G -> A10R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A11R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A18R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A11R:G -> A19R:G: outward } 0 15 {A19R:G -> A11R:G: outward } 0 16 {A18R:C -> A19R:G: adjacent_5p } 0 17 {A19R:G -> A18R:C: adjacent_3p } 0 18 {A19R:G -> A20R:C: adjacent_5p upward } 0 19 {A20R:C -> A19R:G: adjacent_3p downward } 0 20 {A20R:C -> A21R:G: adjacent_5p upward } 0 21 {A21R:G -> A20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:U 0 4 A23R:U 0 5 A24R:C 0 6 A25R:G 0 7 A26R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A26R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A25R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A24R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A25R:G: outward } 0 13 {A25R:G -> A4R:G: outward } 0 14 {A5R:U -> A23R:U: pairing antiparallel cis XVI Ws/Ww } 0 15 {A23R:U -> A5R:U: pairing antiparallel cis XVI Ww/Ws } 0 16 {A23R:U -> A24R:C: adjacent_5p upward } 0 17 {A24R:C -> A23R:U: adjacent_3p downward } 0 18 {A24R:C -> A25R:G: adjacent_5p } 0 19 {A25R:G -> A24R:C: adjacent_3p } 0 20 {A25R:G -> A26R:C: adjacent_5p upward } 0 21 {A26R:C -> A25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:U 0 3 A6R:C 0 4 A22R:G 0 5 A23R:U 0 6 A24R:C 0 7 A25R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A24R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A25R:G: outward } 0 9 {A25R:G -> A4R:G: outward } 0 10 {A5R:U -> A6R:C: adjacent_5p } 0 11 {A6R:C -> A5R:U: adjacent_3p } 0 12 {A5R:U -> A23R:U: pairing antiparallel cis XVI Ws/Ww } 0 13 {A23R:U -> A5R:U: pairing antiparallel cis XVI Ww/Ws } 0 14 {A6R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A22R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A22R:G -> A23R:U: adjacent_5p upward } 0 17 {A23R:U -> A22R:G: adjacent_3p downward } 0 18 {A23R:U -> A24R:C: adjacent_5p upward } 0 19 {A24R:C -> A23R:U: adjacent_3p downward } 0 20 {A24R:C -> A25R:G: adjacent_5p } 0 21 {A25R:G -> A24R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:A 0 2 A10R:C 0 3 A11R:C 0 4 A16R:G 0 5 A17R:G 0 6 A18R:U 0 7 A19R:G 0 [Edges] 0 {A8R:C -> A9R:A: adjacent_5p upward } 0 1 {A9R:A -> A8R:C: adjacent_3p downward } 0 2 {A8R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:A -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:A: adjacent_3p downward } 0 6 {A9R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A18R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:A -> A19R:G: outward } 0 9 {A19R:G -> A9R:A: outward } 0 10 {A10R:C -> A11R:C: adjacent_5p upward } 0 11 {A11R:C -> A10R:C: adjacent_3p downward } 0 12 {A10R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A11R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A16R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A16R:G -> A17R:G: adjacent_5p upward } 0 17 {A17R:G -> A16R:G: adjacent_3p downward } 0 18 {A17R:G -> A18R:U: adjacent_5p upward } 0 19 {A18R:U -> A17R:G: adjacent_3p downward } 0 20 {A18R:U -> A19R:G: adjacent_5p upward } 0 21 {A19R:G -> A18R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 D583R:A 0 1 D584R:G 0 2 D585R:G 0 3 D586R:C 0 4 E755R:G 0 5 E756R:C 0 6 E757R:U 0 7 E758R:U 0 [Edges] 0 {D583R:A -> D584R:G: adjacent_5p } 0 1 {D584R:G -> D583R:A: adjacent_3p } 0 2 {D583R:A -> E758R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {E758R:U -> D583R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {D584R:G -> D585R:G: adjacent_5p upward } 0 5 {D585R:G -> D584R:G: adjacent_3p downward } 0 6 {D584R:G -> E757R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {E757R:U -> D584R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {D584R:G -> E758R:U: outward } 0 9 {E758R:U -> D584R:G: outward } 0 10 {D585R:G -> D586R:C: adjacent_5p upward } 0 11 {D586R:C -> D585R:G: adjacent_3p downward } 0 12 {D585R:G -> E756R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {E756R:C -> D585R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D586R:C -> E755R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {E755R:G -> D586R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {E755R:G -> E756R:C: adjacent_5p upward } 0 17 {E756R:C -> E755R:G: adjacent_3p downward } 0 18 {E756R:C -> E757R:U: adjacent_5p upward } 0 19 {E757R:U -> E756R:C: adjacent_3p downward } 0 20 {E757R:U -> E758R:U: adjacent_5p } 0 21 {E758R:U -> E757R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D588R:G 0 1 D589R:C 0 2 D590R:C 0 3 D591R:G 0 4 D594R:A 0 5 D649R:G 0 6 D650R:G 0 7 D651R:C 0 [Edges] 0 {D588R:G -> D589R:C: adjacent_5p upward } 0 1 {D589R:C -> D588R:G: adjacent_3p downward } 0 2 {D588R:G -> D651R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D651R:C -> D588R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D589R:C -> D590R:C: adjacent_5p upward } 0 5 {D590R:C -> D589R:C: adjacent_3p downward } 0 6 {D589R:C -> D650R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D650R:G -> D589R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D590R:C -> D591R:G: adjacent_5p upward } 0 9 {D591R:G -> D590R:C: adjacent_3p downward } 0 10 {D590R:C -> D649R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D649R:G -> D590R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D590R:C -> D650R:G: outward } 0 13 {D650R:G -> D590R:C: outward } 0 14 {D591R:G -> D594R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 15 {D594R:A -> D591R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 16 {D591R:G -> D649R:G: outward } 0 17 {D649R:G -> D591R:G: outward } 0 18 {D594R:A -> D649R:G: adjacent_5p upward } 0 19 {D649R:G -> D594R:A: adjacent_3p downward } 0 20 {D649R:G -> D650R:G: adjacent_5p upward } 0 21 {D650R:G -> D649R:G: adjacent_3p downward } 0 22 {D650R:G -> D651R:C: adjacent_5p upward } 0 23 {D651R:C -> D650R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 D654R:G 0 1 D655R:A 0 2 D656R:C 0 3 D657R:G 0 4 E749R:C 0 5 E750R:G 0 6 E751R:U 0 7 E752R:G 0 [Edges] 0 {D654R:G -> D655R:A: adjacent_5p upward } 0 1 {D655R:A -> D654R:G: adjacent_3p downward } 0 2 {D654R:G -> E752R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 3 {E752R:G -> D654R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 4 {D655R:A -> D656R:C: adjacent_5p upward } 0 5 {D656R:C -> D655R:A: adjacent_3p downward } 0 6 {D655R:A -> E751R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {E751R:U -> D655R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D656R:C -> D657R:G: adjacent_5p upward } 0 9 {D657R:G -> D656R:C: adjacent_3p downward } 0 10 {D656R:C -> E750R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {E750R:G -> D656R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D657R:G -> E749R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {E749R:C -> D657R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D657R:G -> E750R:G: outward } 0 15 {E750R:G -> D657R:G: outward } 0 16 {E749R:C -> E750R:G: adjacent_5p } 0 17 {E750R:G -> E749R:C: adjacent_3p } 0 18 {E750R:G -> E751R:U: adjacent_5p upward } 0 19 {E751R:U -> E750R:G: adjacent_3p downward } 0 20 {E751R:U -> E752R:G: adjacent_5p upward } 0 21 {E752R:G -> E751R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D658R:G 0 1 D659R:U 0 2 D660R:G 0 3 D661R:G 0 4 E744R:C 0 5 E745R:C 0 6 E746R:A 0 7 E747R:C 0 [Edges] 0 {D658R:G -> D659R:U: adjacent_5p upward } 0 1 {D659R:U -> D658R:G: adjacent_3p downward } 0 2 {D658R:G -> E747R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E747R:C -> D658R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D659R:U -> D660R:G: adjacent_5p upward } 0 5 {D660R:G -> D659R:U: adjacent_3p downward } 0 6 {D659R:U -> E746R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {E746R:A -> D659R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D660R:G -> D661R:G: adjacent_5p upward } 0 9 {D661R:G -> D660R:G: adjacent_3p downward } 0 10 {D660R:G -> E745R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E745R:C -> D660R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D660R:G -> E746R:A: outward } 0 13 {E746R:A -> D660R:G: outward } 0 14 {D661R:G -> E744R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {E744R:C -> D661R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {E744R:C -> E745R:C: adjacent_5p } 0 17 {E745R:C -> E744R:C: adjacent_3p } 0 18 {E745R:C -> E746R:A: adjacent_5p upward } 0 19 {E746R:A -> E745R:C: adjacent_3p downward } 0 20 {E746R:A -> E747R:C: adjacent_5p upward } 0 21 {E747R:C -> E746R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D659R:U 0 1 D660R:G 0 2 D661R:G 0 3 D662R:G 0 4 E743R:U 0 5 E744R:C 0 6 E745R:C 0 7 E746R:A 0 [Edges] 0 {D659R:U -> D660R:G: adjacent_5p upward } 0 1 {D660R:G -> D659R:U: adjacent_3p downward } 0 2 {D659R:U -> E746R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {E746R:A -> D659R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D660R:G -> D661R:G: adjacent_5p upward } 0 5 {D661R:G -> D660R:G: adjacent_3p downward } 0 6 {D660R:G -> E745R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E745R:C -> D660R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D660R:G -> E746R:A: outward } 0 9 {E746R:A -> D660R:G: outward } 0 10 {D661R:G -> D662R:G: adjacent_5p upward } 0 11 {D662R:G -> D661R:G: adjacent_3p downward } 0 12 {D661R:G -> E744R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {E744R:C -> D661R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D662R:G -> E743R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {E743R:U -> D662R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {D662R:G -> E744R:C: outward } 0 17 {E744R:C -> D662R:G: outward } 0 18 {E743R:U -> E744R:C: adjacent_5p } 0 19 {E744R:C -> E743R:U: adjacent_3p } 0 20 {E744R:C -> E745R:C: adjacent_5p } 0 21 {E745R:C -> E744R:C: adjacent_3p } 0 22 {E745R:C -> E746R:A: adjacent_5p upward } 0 23 {E746R:A -> E745R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 D660R:G 0 1 D661R:G 0 2 D662R:G 0 3 D663R:A 0 4 E742R:G 0 5 E743R:U 0 6 E744R:C 0 7 E745R:C 0 [Edges] 0 {D660R:G -> D661R:G: adjacent_5p upward } 0 1 {D661R:G -> D660R:G: adjacent_3p downward } 0 2 {D660R:G -> E745R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E745R:C -> D660R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D661R:G -> D662R:G: adjacent_5p upward } 0 5 {D662R:G -> D661R:G: adjacent_3p downward } 0 6 {D661R:G -> E744R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E744R:C -> D661R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D662R:G -> D663R:A: adjacent_5p upward } 0 9 {D663R:A -> D662R:G: adjacent_3p downward } 0 10 {D662R:G -> E743R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {E743R:U -> D662R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {D662R:G -> E744R:C: outward } 0 13 {E744R:C -> D662R:G: outward } 0 14 {D663R:A -> E742R:G: pairing antiparallel cis VIII Ww/Ww } 0 15 {E742R:G -> D663R:A: pairing antiparallel cis VIII Ww/Ww } 0 16 {E742R:G -> E743R:U: adjacent_5p upward } 0 17 {E743R:U -> E742R:G: adjacent_3p downward } 0 18 {E743R:U -> E744R:C: adjacent_5p } 0 19 {E744R:C -> E743R:U: adjacent_3p } 0 20 {E744R:C -> E745R:C: adjacent_5p } 0 21 {E745R:C -> E744R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D661R:G 0 1 D662R:G 0 2 D663R:A 0 3 D664R:G 0 4 E741R:G 0 5 E742R:G 0 6 E743R:U 0 7 E744R:C 0 [Edges] 0 {D661R:G -> D662R:G: adjacent_5p upward } 0 1 {D662R:G -> D661R:G: adjacent_3p downward } 0 2 {D661R:G -> E744R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E744R:C -> D661R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D662R:G -> D663R:A: adjacent_5p upward } 0 5 {D663R:A -> D662R:G: adjacent_3p downward } 0 6 {D662R:G -> E743R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {E743R:U -> D662R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {D662R:G -> E744R:C: outward } 0 9 {E744R:C -> D662R:G: outward } 0 10 {D663R:A -> D664R:G: adjacent_5p upward } 0 11 {D664R:G -> D663R:A: adjacent_3p downward } 0 12 {D663R:A -> E742R:G: pairing antiparallel cis VIII Ww/Ww } 0 13 {E742R:G -> D663R:A: pairing antiparallel cis VIII Ww/Ww } 0 14 {D664R:G -> E741R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 15 {E741R:G -> D664R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 16 {E741R:G -> E742R:G: adjacent_5p upward } 0 17 {E742R:G -> E741R:G: adjacent_3p downward } 0 18 {E742R:G -> E743R:U: adjacent_5p upward } 0 19 {E743R:U -> E742R:G: adjacent_3p downward } 0 20 {E743R:U -> E744R:C: adjacent_5p } 0 21 {E744R:C -> E743R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D666R:G 0 1 D667R:G 0 2 D668R:G 0 3 D669R:U 0 4 E737R:A 0 5 E738R:C 0 6 E739R:C 0 7 E740R:U 0 [Edges] 0 {D666R:G -> D667R:G: adjacent_5p upward } 0 1 {D667R:G -> D666R:G: adjacent_3p downward } 0 2 {D666R:G -> E740R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {E740R:U -> D666R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {D667R:G -> D668R:G: adjacent_5p upward } 0 5 {D668R:G -> D667R:G: adjacent_3p downward } 0 6 {D667R:G -> E739R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E739R:C -> D667R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D668R:G -> D669R:U: adjacent_5p upward } 0 9 {D669R:U -> D668R:G: adjacent_3p downward } 0 10 {D668R:G -> E738R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E738R:C -> D668R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D669R:U -> E737R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {E737R:A -> D669R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {E737R:A -> E738R:C: adjacent_5p upward } 0 15 {E738R:C -> E737R:A: adjacent_3p downward } 0 16 {E738R:C -> E739R:C: adjacent_5p upward } 0 17 {E739R:C -> E738R:C: adjacent_3p downward } 0 18 {E739R:C -> E740R:U: adjacent_5p upward } 0 19 {E740R:U -> E739R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D667R:G 0 1 D668R:G 0 2 D669R:U 0 3 D670R:G 0 4 E736R:C 0 5 E737R:A 0 6 E738R:C 0 7 E739R:C 0 [Edges] 0 {D667R:G -> D668R:G: adjacent_5p upward } 0 1 {D668R:G -> D667R:G: adjacent_3p downward } 0 2 {D667R:G -> E739R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E739R:C -> D667R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D668R:G -> D669R:U: adjacent_5p upward } 0 5 {D669R:U -> D668R:G: adjacent_3p downward } 0 6 {D668R:G -> E738R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E738R:C -> D668R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D669R:U -> D670R:G: adjacent_5p } 0 9 {D670R:G -> D669R:U: adjacent_3p } 0 10 {D669R:U -> E737R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {E737R:A -> D669R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D670R:G -> E736R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {E736R:C -> D670R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D670R:G -> E737R:A: outward } 0 15 {E737R:A -> D670R:G: outward } 0 16 {E736R:C -> E737R:A: adjacent_5p upward } 0 17 {E737R:A -> E736R:C: adjacent_3p downward } 0 18 {E737R:A -> E738R:C: adjacent_5p upward } 0 19 {E738R:C -> E737R:A: adjacent_3p downward } 0 20 {E738R:C -> E739R:C: adjacent_5p upward } 0 21 {E739R:C -> E738R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D668R:G 0 1 D669R:U 0 2 D670R:G 0 3 D671R:G 0 4 E735R:C 0 5 E736R:C 0 6 E737R:A 0 7 E738R:C 0 [Edges] 0 {D668R:G -> D669R:U: adjacent_5p upward } 0 1 {D669R:U -> D668R:G: adjacent_3p downward } 0 2 {D668R:G -> E738R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E738R:C -> D668R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D669R:U -> D670R:G: adjacent_5p } 0 5 {D670R:G -> D669R:U: adjacent_3p } 0 6 {D669R:U -> E737R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {E737R:A -> D669R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D670R:G -> D671R:G: adjacent_5p upward } 0 9 {D671R:G -> D670R:G: adjacent_3p downward } 0 10 {D670R:G -> E736R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E736R:C -> D670R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D670R:G -> E737R:A: outward } 0 13 {E737R:A -> D670R:G: outward } 0 14 {D671R:G -> E735R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {E735R:C -> D671R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {E735R:C -> E736R:C: adjacent_5p } 0 17 {E736R:C -> E735R:C: adjacent_3p } 0 18 {E736R:C -> E737R:A: adjacent_5p upward } 0 19 {E737R:A -> E736R:C: adjacent_3p downward } 0 20 {E737R:A -> E738R:C: adjacent_5p upward } 0 21 {E738R:C -> E737R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D669R:U 0 1 D670R:G 0 2 D671R:G 0 3 D672R:U 0 4 E734R:G 0 5 E735R:C 0 6 E736R:C 0 7 E737R:A 0 [Edges] 0 {D669R:U -> D670R:G: adjacent_5p } 0 1 {D670R:G -> D669R:U: adjacent_3p } 0 2 {D669R:U -> E737R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {E737R:A -> D669R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D670R:G -> D671R:G: adjacent_5p upward } 0 5 {D671R:G -> D670R:G: adjacent_3p downward } 0 6 {D670R:G -> E736R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E736R:C -> D670R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D670R:G -> E737R:A: outward } 0 9 {E737R:A -> D670R:G: outward } 0 10 {D671R:G -> D672R:U: adjacent_5p upward } 0 11 {D672R:U -> D671R:G: adjacent_3p downward } 0 12 {D671R:G -> E735R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {E735R:C -> D671R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D672R:U -> E734R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {E734R:G -> D672R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {E734R:G -> E735R:C: adjacent_5p upward } 0 17 {E735R:C -> E734R:G: adjacent_3p downward } 0 18 {E735R:C -> E736R:C: adjacent_5p } 0 19 {E736R:C -> E735R:C: adjacent_3p } 0 20 {E736R:C -> E737R:A: adjacent_5p upward } 0 21 {E737R:A -> E736R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 I583R:A 0 1 I584R:G 0 2 I585R:G 0 3 I586R:C 0 4 J755R:G 0 5 J756R:C 0 6 J757R:U 0 7 J758R:U 0 [Edges] 0 {I583R:A -> I584R:G: adjacent_5p upward } 0 1 {I584R:G -> I583R:A: adjacent_3p downward } 0 2 {I583R:A -> J758R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {J758R:U -> I583R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {I584R:G -> I585R:G: adjacent_5p upward } 0 5 {I585R:G -> I584R:G: adjacent_3p downward } 0 6 {I584R:G -> J757R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {J757R:U -> I584R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {I585R:G -> I586R:C: adjacent_5p upward } 0 9 {I586R:C -> I585R:G: adjacent_3p downward } 0 10 {I585R:G -> J756R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {J756R:C -> I585R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {I586R:C -> J755R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {J755R:G -> I586R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {J755R:G -> J756R:C: adjacent_5p upward } 0 15 {J756R:C -> J755R:G: adjacent_3p downward } 0 16 {J756R:C -> J757R:U: adjacent_5p upward } 0 17 {J757R:U -> J756R:C: adjacent_3p downward } 0 18 {J757R:U -> J758R:U: adjacent_5p } 0 19 {J758R:U -> J757R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 I654R:G 0 1 I655R:A 0 2 I656R:C 0 3 I657R:G 0 4 J749R:C 0 5 J750R:G 0 6 J751R:U 0 7 J752R:G 0 [Edges] 0 {I654R:G -> I655R:A: adjacent_5p upward } 0 1 {I655R:A -> I654R:G: adjacent_3p downward } 0 2 {I654R:G -> J752R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 3 {J752R:G -> I654R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 4 {I655R:A -> I656R:C: adjacent_5p upward } 0 5 {I656R:C -> I655R:A: adjacent_3p downward } 0 6 {I655R:A -> J751R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {J751R:U -> I655R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {I656R:C -> I657R:G: adjacent_5p upward } 0 9 {I657R:G -> I656R:C: adjacent_3p downward } 0 10 {I656R:C -> J750R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {J750R:G -> I656R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {I657R:G -> J749R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {J749R:C -> I657R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {I657R:G -> J750R:G: outward } 0 15 {J750R:G -> I657R:G: outward } 0 16 {J749R:C -> J750R:G: adjacent_5p } 0 17 {J750R:G -> J749R:C: adjacent_3p } 0 18 {J750R:G -> J751R:U: adjacent_5p upward } 0 19 {J751R:U -> J750R:G: adjacent_3p downward } 0 20 {J751R:U -> J752R:G: adjacent_5p upward } 0 21 {J752R:G -> J751R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 I658R:G 0 1 I659R:U 0 2 I660R:G 0 3 I661R:G 0 4 J744R:C 0 5 J745R:C 0 6 J746R:A 0 7 J747R:C 0 [Edges] 0 {I658R:G -> I659R:U: adjacent_5p upward } 0 1 {I659R:U -> I658R:G: adjacent_3p downward } 0 2 {I658R:G -> J747R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {J747R:C -> I658R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {I659R:U -> I660R:G: adjacent_5p upward } 0 5 {I660R:G -> I659R:U: adjacent_3p downward } 0 6 {I659R:U -> J746R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {J746R:A -> I659R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {I660R:G -> I661R:G: adjacent_5p upward } 0 9 {I661R:G -> I660R:G: adjacent_3p downward } 0 10 {I660R:G -> J745R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {J745R:C -> I660R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {I660R:G -> J746R:A: outward } 0 13 {J746R:A -> I660R:G: outward } 0 14 {I661R:G -> J744R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {J744R:C -> I661R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {J744R:C -> J745R:C: adjacent_5p upward } 0 17 {J745R:C -> J744R:C: adjacent_3p downward } 0 18 {J745R:C -> J746R:A: adjacent_5p upward } 0 19 {J746R:A -> J745R:C: adjacent_3p downward } 0 20 {J746R:A -> J747R:C: adjacent_5p upward } 0 21 {J747R:C -> J746R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 I659R:U 0 1 I660R:G 0 2 I661R:G 0 3 I662R:G 0 4 J743R:U 0 5 J744R:C 0 6 J745R:C 0 7 J746R:A 0 [Edges] 0 {I659R:U -> I660R:G: adjacent_5p upward } 0 1 {I660R:G -> I659R:U: adjacent_3p downward } 0 2 {I659R:U -> J746R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {J746R:A -> I659R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {I660R:G -> I661R:G: adjacent_5p upward } 0 5 {I661R:G -> I660R:G: adjacent_3p downward } 0 6 {I660R:G -> J745R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {J745R:C -> I660R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {I660R:G -> J746R:A: outward } 0 9 {J746R:A -> I660R:G: outward } 0 10 {I661R:G -> I662R:G: adjacent_5p upward } 0 11 {I662R:G -> I661R:G: adjacent_3p downward } 0 12 {I661R:G -> J744R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {J744R:C -> I661R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {I662R:G -> J743R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {J743R:U -> I662R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {J743R:U -> J744R:C: adjacent_5p } 0 17 {J744R:C -> J743R:U: adjacent_3p } 0 18 {J744R:C -> J745R:C: adjacent_5p upward } 0 19 {J745R:C -> J744R:C: adjacent_3p downward } 0 20 {J745R:C -> J746R:A: adjacent_5p upward } 0 21 {J746R:A -> J745R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 I660R:G 0 1 I661R:G 0 2 I662R:G 0 3 I663R:A 0 4 J742R:G 0 5 J743R:U 0 6 J744R:C 0 7 J745R:C 0 [Edges] 0 {I660R:G -> I661R:G: adjacent_5p upward } 0 1 {I661R:G -> I660R:G: adjacent_3p downward } 0 2 {I660R:G -> J745R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {J745R:C -> I660R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {I661R:G -> I662R:G: adjacent_5p upward } 0 5 {I662R:G -> I661R:G: adjacent_3p downward } 0 6 {I661R:G -> J744R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {J744R:C -> I661R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {I662R:G -> I663R:A: adjacent_5p upward } 0 9 {I663R:A -> I662R:G: adjacent_3p downward } 0 10 {I662R:G -> J743R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {J743R:U -> I662R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {I663R:A -> J742R:G: pairing antiparallel cis VIII Ww/Ww } 0 13 {J742R:G -> I663R:A: pairing antiparallel cis VIII Ww/Ww } 0 14 {J742R:G -> J743R:U: adjacent_5p upward } 0 15 {J743R:U -> J742R:G: adjacent_3p downward } 0 16 {J743R:U -> J744R:C: adjacent_5p } 0 17 {J744R:C -> J743R:U: adjacent_3p } 0 18 {J744R:C -> J745R:C: adjacent_5p upward } 0 19 {J745R:C -> J744R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 I661R:G 0 1 I662R:G 0 2 I663R:A 0 3 I664R:G 0 4 J741R:G 0 5 J742R:G 0 6 J743R:U 0 7 J744R:C 0 [Edges] 0 {I661R:G -> I662R:G: adjacent_5p upward } 0 1 {I662R:G -> I661R:G: adjacent_3p downward } 0 2 {I661R:G -> J744R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {J744R:C -> I661R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {I662R:G -> I663R:A: adjacent_5p upward } 0 5 {I663R:A -> I662R:G: adjacent_3p downward } 0 6 {I662R:G -> J743R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {J743R:U -> I662R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {I663R:A -> I664R:G: adjacent_5p upward } 0 9 {I664R:G -> I663R:A: adjacent_3p downward } 0 10 {I663R:A -> J742R:G: pairing antiparallel cis VIII Ww/Ww } 0 11 {J742R:G -> I663R:A: pairing antiparallel cis VIII Ww/Ww } 0 12 {I664R:G -> J741R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 13 {J741R:G -> I664R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 14 {J741R:G -> J742R:G: adjacent_5p upward } 0 15 {J742R:G -> J741R:G: adjacent_3p downward } 0 16 {J742R:G -> J743R:U: adjacent_5p upward } 0 17 {J743R:U -> J742R:G: adjacent_3p downward } 0 18 {J743R:U -> J744R:C: adjacent_5p } 0 19 {J744R:C -> J743R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 I666R:G 0 1 I667R:G 0 2 I668R:G 0 3 I669R:U 0 4 J737R:A 0 5 J738R:C 0 6 J739R:C 0 7 J740R:U 0 [Edges] 0 {I666R:G -> I667R:G: adjacent_5p upward } 0 1 {I667R:G -> I666R:G: adjacent_3p downward } 0 2 {I666R:G -> J740R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {J740R:U -> I666R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {I667R:G -> I668R:G: adjacent_5p upward } 0 5 {I668R:G -> I667R:G: adjacent_3p downward } 0 6 {I667R:G -> J739R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {J739R:C -> I667R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {I668R:G -> I669R:U: adjacent_5p upward } 0 9 {I669R:U -> I668R:G: adjacent_3p downward } 0 10 {I668R:G -> J738R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {J738R:C -> I668R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {I669R:U -> J737R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {J737R:A -> I669R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {J737R:A -> J738R:C: adjacent_5p upward } 0 15 {J738R:C -> J737R:A: adjacent_3p downward } 0 16 {J738R:C -> J739R:C: adjacent_5p upward } 0 17 {J739R:C -> J738R:C: adjacent_3p downward } 0 18 {J739R:C -> J740R:U: adjacent_5p upward } 0 19 {J740R:U -> J739R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 I667R:G 0 1 I668R:G 0 2 I669R:U 0 3 I670R:G 0 4 J736R:C 0 5 J737R:A 0 6 J738R:C 0 7 J739R:C 0 [Edges] 0 {I667R:G -> I668R:G: adjacent_5p upward } 0 1 {I668R:G -> I667R:G: adjacent_3p downward } 0 2 {I667R:G -> J739R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {J739R:C -> I667R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {I668R:G -> I669R:U: adjacent_5p upward } 0 5 {I669R:U -> I668R:G: adjacent_3p downward } 0 6 {I668R:G -> J738R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {J738R:C -> I668R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {I669R:U -> I670R:G: adjacent_5p upward } 0 9 {I670R:G -> I669R:U: adjacent_3p downward } 0 10 {I669R:U -> J737R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {J737R:A -> I669R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {I670R:G -> J736R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {J736R:C -> I670R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {I670R:G -> J737R:A: outward } 0 15 {J737R:A -> I670R:G: outward } 0 16 {J736R:C -> J737R:A: adjacent_5p } 0 17 {J737R:A -> J736R:C: adjacent_3p } 0 18 {J737R:A -> J738R:C: adjacent_5p upward } 0 19 {J738R:C -> J737R:A: adjacent_3p downward } 0 20 {J738R:C -> J739R:C: adjacent_5p upward } 0 21 {J739R:C -> J738R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 I668R:G 0 1 I669R:U 0 2 I670R:G 0 3 I671R:G 0 4 J735R:C 0 5 J736R:C 0 6 J737R:A 0 7 J738R:C 0 [Edges] 0 {I668R:G -> I669R:U: adjacent_5p upward } 0 1 {I669R:U -> I668R:G: adjacent_3p downward } 0 2 {I668R:G -> J738R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {J738R:C -> I668R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {I669R:U -> I670R:G: adjacent_5p upward } 0 5 {I670R:G -> I669R:U: adjacent_3p downward } 0 6 {I669R:U -> J737R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {J737R:A -> I669R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {I670R:G -> I671R:G: adjacent_5p upward } 0 9 {I671R:G -> I670R:G: adjacent_3p downward } 0 10 {I670R:G -> J736R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {J736R:C -> I670R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {I670R:G -> J737R:A: outward } 0 13 {J737R:A -> I670R:G: outward } 0 14 {I671R:G -> J735R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {J735R:C -> I671R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {J735R:C -> J736R:C: adjacent_5p upward } 0 17 {J736R:C -> J735R:C: adjacent_3p downward } 0 18 {J736R:C -> J737R:A: adjacent_5p } 0 19 {J737R:A -> J736R:C: adjacent_3p } 0 20 {J737R:A -> J738R:C: adjacent_5p upward } 0 21 {J738R:C -> J737R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 I669R:U 0 1 I670R:G 0 2 I671R:G 0 3 I672R:U 0 4 J734R:G 0 5 J735R:C 0 6 J736R:C 0 7 J737R:A 0 [Edges] 0 {I669R:U -> I670R:G: adjacent_5p upward } 0 1 {I670R:G -> I669R:U: adjacent_3p downward } 0 2 {I669R:U -> J737R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {J737R:A -> I669R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {I670R:G -> I671R:G: adjacent_5p upward } 0 5 {I671R:G -> I670R:G: adjacent_3p downward } 0 6 {I670R:G -> J736R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {J736R:C -> I670R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {I670R:G -> J737R:A: outward } 0 9 {J737R:A -> I670R:G: outward } 0 10 {I671R:G -> I672R:U: adjacent_5p upward } 0 11 {I672R:U -> I671R:G: adjacent_3p downward } 0 12 {I671R:G -> J735R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {J735R:C -> I671R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {I672R:U -> J734R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {J734R:G -> I672R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {J734R:G -> J735R:C: adjacent_5p upward } 0 17 {J735R:C -> J734R:G: adjacent_3p downward } 0 18 {J735R:C -> J736R:C: adjacent_5p upward } 0 19 {J736R:C -> J735R:C: adjacent_3p downward } 0 20 {J736R:C -> J737R:A: adjacent_5p } 0 21 {J737R:A -> J736R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A42R:G 0 1 A43R:U 0 2 A44R:C 0 3 A45R:U 0 4 A75R:A 0 5 A76R:G 0 6 A77R:G 0 7 A78R:C 0 [Edges] 0 {A42R:G -> A43R:U: adjacent_5p upward } 0 1 {A43R:U -> A42R:G: adjacent_3p downward } 0 2 {A42R:G -> A78R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A78R:C -> A42R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A43R:U -> A44R:C: adjacent_5p } 0 5 {A44R:C -> A43R:U: adjacent_3p } 0 6 {A43R:U -> A77R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A77R:G -> A43R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A44R:C -> A45R:U: adjacent_5p upward } 0 9 {A45R:U -> A44R:C: adjacent_3p downward } 0 10 {A44R:C -> A76R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A76R:G -> A44R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A45R:U -> A75R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A75R:A -> A45R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A75R:A -> A76R:G: adjacent_5p upward } 0 15 {A76R:G -> A75R:A: adjacent_3p downward } 0 16 {A76R:G -> A77R:G: adjacent_5p upward } 0 17 {A77R:G -> A76R:G: adjacent_3p downward } 0 18 {A77R:G -> A78R:C: adjacent_5p upward } 0 19 {A78R:C -> A77R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A43R:U 0 1 A44R:C 0 2 A45R:U 0 3 A46R:G 0 4 A74R:C 0 5 A75R:A 0 6 A76R:G 0 7 A77R:G 0 [Edges] 0 {A43R:U -> A44R:C: adjacent_5p } 0 1 {A44R:C -> A43R:U: adjacent_3p } 0 2 {A43R:U -> A77R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A77R:G -> A43R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A44R:C -> A45R:U: adjacent_5p upward } 0 5 {A45R:U -> A44R:C: adjacent_3p downward } 0 6 {A44R:C -> A76R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A76R:G -> A44R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A45R:U -> A46R:G: adjacent_5p upward } 0 9 {A46R:G -> A45R:U: adjacent_3p downward } 0 10 {A45R:U -> A75R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A75R:A -> A45R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A46R:G -> A74R:C: pairing antiparallel cis Ww/Ww } 0 13 {A74R:C -> A46R:G: pairing antiparallel cis Ww/Ww } 0 14 {A46R:G -> A75R:A: outward } 0 15 {A75R:A -> A46R:G: outward } 0 16 {A74R:C -> A75R:A: adjacent_5p upward } 0 17 {A75R:A -> A74R:C: adjacent_3p downward } 0 18 {A75R:A -> A76R:G: adjacent_5p upward } 0 19 {A76R:G -> A75R:A: adjacent_3p downward } 0 20 {A76R:G -> A77R:G: adjacent_5p upward } 0 21 {A77R:G -> A76R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A44R:C 0 1 A45R:U 0 2 A46R:G 0 3 A47R:G 0 4 A73R:A 0 5 A74R:C 0 6 A75R:A 0 7 A76R:G 0 [Edges] 0 {A44R:C -> A45R:U: adjacent_5p upward } 0 1 {A45R:U -> A44R:C: adjacent_3p downward } 0 2 {A44R:C -> A76R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A76R:G -> A44R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A45R:U -> A46R:G: adjacent_5p upward } 0 5 {A46R:G -> A45R:U: adjacent_3p downward } 0 6 {A45R:U -> A75R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A75R:A -> A45R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A46R:G -> A47R:G: adjacent_5p upward } 0 9 {A47R:G -> A46R:G: adjacent_3p downward } 0 10 {A46R:G -> A74R:C: pairing antiparallel cis Ww/Ww } 0 11 {A74R:C -> A46R:G: pairing antiparallel cis Ww/Ww } 0 12 {A46R:G -> A75R:A: outward } 0 13 {A75R:A -> A46R:G: outward } 0 14 {A47R:G -> A73R:A: pairing antiparallel cis VIII Ww/Ww } 0 15 {A73R:A -> A47R:G: pairing antiparallel cis VIII Ww/Ww } 0 16 {A73R:A -> A74R:C: adjacent_5p upward } 0 17 {A74R:C -> A73R:A: adjacent_3p downward } 0 18 {A74R:C -> A75R:A: adjacent_5p upward } 0 19 {A75R:A -> A74R:C: adjacent_3p downward } 0 20 {A75R:A -> A76R:G: adjacent_5p upward } 0 21 {A76R:G -> A75R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:A 0 1 A3R:G 0 2 A4R:G 0 3 A5R:U 0 4 B12R:G 0 5 B13R:U 0 6 B14R:C 0 7 B15R:U 0 [Edges] 0 {A2R:A -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:A: adjacent_3p downward } 0 2 {A2R:A -> B15R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B15R:U -> A2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> B14R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B14R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> B13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B13R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A5R:U -> B12R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {B12R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {B12R:G -> B13R:U: adjacent_5p upward } 0 15 {B13R:U -> B12R:G: adjacent_3p downward } 0 16 {B13R:U -> B14R:C: adjacent_5p } 0 17 {B14R:C -> B13R:U: adjacent_3p } 0 18 {B14R:C -> B15R:U: adjacent_5p } 0 19 {B15R:U -> B14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:G 0 2 A5R:U 0 3 A6R:C 0 4 B11R:G 0 5 B12R:G 0 6 B13R:U 0 7 B14R:C 0 [Edges] 0 {A3R:G -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> B14R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B14R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B13R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A5R:U -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:U: adjacent_3p downward } 0 10 {A5R:U -> B12R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B12R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A6R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B11R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B11R:G -> B12R:G: adjacent_5p upward } 0 15 {B12R:G -> B11R:G: adjacent_3p downward } 0 16 {B12R:G -> B13R:U: adjacent_5p upward } 0 17 {B13R:U -> B12R:G: adjacent_3p downward } 0 18 {B13R:U -> B14R:C: adjacent_5p } 0 19 {B14R:C -> B13R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:U 0 2 A6R:C 0 3 A7R:U 0 4 B10R:A 0 5 B11R:G 0 6 B12R:G 0 7 B13R:U 0 [Edges] 0 {A4R:G -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B13R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A5R:U -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> B12R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B12R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A6R:C -> A7R:U: adjacent_5p } 0 9 {A7R:U -> A6R:C: adjacent_3p } 0 10 {A6R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B11R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:U -> B10R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B10R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B10R:A -> B11R:G: adjacent_5p upward } 0 15 {B11R:G -> B10R:A: adjacent_3p downward } 0 16 {B11R:G -> B12R:G: adjacent_5p upward } 0 17 {B12R:G -> B11R:G: adjacent_3p downward } 0 18 {B12R:G -> B13R:U: adjacent_5p upward } 0 19 {B13R:U -> B12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B1R:G 0 1 B2R:G 0 2 B3R:G 0 3 B4R:C 0 4 B69R:G 0 5 B70R:C 0 6 B71R:C 0 7 B72R:C 0 [Edges] 0 {B1R:G -> B2R:G: adjacent_5p upward } 0 1 {B2R:G -> B1R:G: adjacent_3p downward } 0 2 {B1R:G -> B72R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B72R:C -> B1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B2R:G -> B3R:G: adjacent_5p upward } 0 5 {B3R:G -> B2R:G: adjacent_3p downward } 0 6 {B2R:G -> B71R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B71R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B3R:G -> B4R:C: adjacent_5p upward } 0 9 {B4R:C -> B3R:G: adjacent_3p downward } 0 10 {B3R:G -> B70R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B70R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B4R:C -> B69R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B69R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B69R:G -> B70R:C: adjacent_5p upward } 0 15 {B70R:C -> B69R:G: adjacent_3p downward } 0 16 {B70R:C -> B71R:C: adjacent_5p upward } 0 17 {B71R:C -> B70R:C: adjacent_3p downward } 0 18 {B71R:C -> B72R:C: adjacent_5p upward } 0 19 {B72R:C -> B71R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B2R:G 0 1 B3R:G 0 2 B4R:C 0 3 B5R:A 0 4 B68R:U 0 5 B69R:G 0 6 B70R:C 0 7 B71R:C 0 [Edges] 0 {B2R:G -> B3R:G: adjacent_5p upward } 0 1 {B3R:G -> B2R:G: adjacent_3p downward } 0 2 {B2R:G -> B71R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B71R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B3R:G -> B4R:C: adjacent_5p upward } 0 5 {B4R:C -> B3R:G: adjacent_3p downward } 0 6 {B3R:G -> B70R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B70R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B4R:C -> B5R:A: adjacent_5p upward } 0 9 {B5R:A -> B4R:C: adjacent_3p downward } 0 10 {B4R:C -> B69R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B69R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B5R:A -> B68R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B68R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B5R:A -> B69R:G: outward } 0 15 {B69R:G -> B5R:A: outward } 0 16 {B68R:U -> B69R:G: adjacent_5p } 0 17 {B69R:G -> B68R:U: adjacent_3p } 0 18 {B69R:G -> B70R:C: adjacent_5p upward } 0 19 {B70R:C -> B69R:G: adjacent_3p downward } 0 20 {B70R:C -> B71R:C: adjacent_5p upward } 0 21 {B71R:C -> B70R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B3R:G 0 1 B4R:C 0 2 B5R:A 0 3 B6R:G 0 4 B67R:C 0 5 B68R:U 0 6 B69R:G 0 7 B70R:C 0 [Edges] 0 {B3R:G -> B4R:C: adjacent_5p upward } 0 1 {B4R:C -> B3R:G: adjacent_3p downward } 0 2 {B3R:G -> B70R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B70R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B4R:C -> B5R:A: adjacent_5p upward } 0 5 {B5R:A -> B4R:C: adjacent_3p downward } 0 6 {B4R:C -> B69R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B69R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B5R:A -> B6R:G: adjacent_5p upward } 0 9 {B6R:G -> B5R:A: adjacent_3p downward } 0 10 {B5R:A -> B68R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B68R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B5R:A -> B69R:G: outward } 0 13 {B69R:G -> B5R:A: outward } 0 14 {B6R:G -> B67R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B67R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B67R:C -> B68R:U: adjacent_5p } 0 17 {B68R:U -> B67R:C: adjacent_3p } 0 18 {B68R:U -> B69R:G: adjacent_5p } 0 19 {B69R:G -> B68R:U: adjacent_3p } 0 20 {B69R:G -> B70R:C: adjacent_5p upward } 0 21 {B70R:C -> B69R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B4R:C 0 1 B5R:A 0 2 B6R:G 0 3 B7R:G 0 4 B66R:C 0 5 B67R:C 0 6 B68R:U 0 7 B69R:G 0 [Edges] 0 {B4R:C -> B5R:A: adjacent_5p upward } 0 1 {B5R:A -> B4R:C: adjacent_3p downward } 0 2 {B4R:C -> B69R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B69R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B5R:A -> B6R:G: adjacent_5p upward } 0 5 {B6R:G -> B5R:A: adjacent_3p downward } 0 6 {B5R:A -> B68R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B68R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B5R:A -> B69R:G: outward } 0 9 {B69R:G -> B5R:A: outward } 0 10 {B6R:G -> B7R:G: adjacent_5p upward } 0 11 {B7R:G -> B6R:G: adjacent_3p downward } 0 12 {B6R:G -> B67R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B67R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B7R:G -> B66R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B66R:C -> B7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B66R:C -> B67R:C: adjacent_5p upward } 0 17 {B67R:C -> B66R:C: adjacent_3p downward } 0 18 {B67R:C -> B68R:U: adjacent_5p } 0 19 {B68R:U -> B67R:C: adjacent_3p } 0 20 {B68R:U -> B69R:G: adjacent_5p } 0 21 {B69R:G -> B68R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B10R:C 0 1 B11R:C 0 2 B12R:C 0 3 B13R:G 0 4 B22R:A 0 5 B23R:G 0 6 B24R:G 0 7 B25R:G 0 [Edges] 0 {B10R:C -> B11R:C: adjacent_5p upward } 0 1 {B11R:C -> B10R:C: adjacent_3p downward } 0 2 {B10R:C -> B25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B25R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B11R:C -> B12R:C: adjacent_5p upward } 0 5 {B12R:C -> B11R:C: adjacent_3p downward } 0 6 {B11R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B24R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B12R:C -> B13R:G: adjacent_5p upward } 0 9 {B13R:G -> B12R:C: adjacent_3p downward } 0 10 {B12R:C -> B23R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B23R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B13R:G -> B22R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {B22R:A -> B13R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {B22R:A -> B23R:G: adjacent_5p upward } 0 15 {B23R:G -> B22R:A: adjacent_3p downward } 0 16 {B23R:G -> B24R:G: adjacent_5p upward } 0 17 {B24R:G -> B23R:G: adjacent_3p downward } 0 18 {B24R:G -> B25R:G: adjacent_5p upward } 0 19 {B25R:G -> B24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B11R:C 0 1 B12R:C 0 2 B13R:G 0 3 B14R:A 0 4 B21R:A 0 5 B22R:A 0 6 B23R:G 0 7 B24R:G 0 [Edges] 0 {B11R:C -> B12R:C: adjacent_5p upward } 0 1 {B12R:C -> B11R:C: adjacent_3p downward } 0 2 {B11R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B24R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B12R:C -> B13R:G: adjacent_5p upward } 0 5 {B13R:G -> B12R:C: adjacent_3p downward } 0 6 {B12R:C -> B23R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B23R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B13R:G -> B14R:A: adjacent_5p } 0 9 {B14R:A -> B13R:G: adjacent_3p } 0 10 {B13R:G -> B22R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {B22R:A -> B13R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {B14R:A -> B21R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 13 {B21R:A -> B14R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 14 {B14R:A -> B22R:A: outward } 0 15 {B22R:A -> B14R:A: outward } 0 16 {B21R:A -> B22R:A: adjacent_5p } 0 17 {B22R:A -> B21R:A: adjacent_3p } 0 18 {B22R:A -> B23R:G: adjacent_5p upward } 0 19 {B23R:G -> B22R:A: adjacent_3p downward } 0 20 {B23R:G -> B24R:G: adjacent_5p upward } 0 21 {B24R:G -> B23R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B26R:G 0 1 B27R:A 0 2 B28R:C 0 3 B29R:G 0 4 B41R:C 0 5 B42R:G 0 6 B43R:U 0 7 B44R:U 0 [Edges] 0 {B26R:G -> B27R:A: adjacent_5p upward } 0 1 {B27R:A -> B26R:G: adjacent_3p downward } 0 2 {B26R:G -> B44R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B44R:U -> B26R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B27R:A -> B28R:C: adjacent_5p upward } 0 5 {B28R:C -> B27R:A: adjacent_3p downward } 0 6 {B27R:A -> B43R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B43R:U -> B27R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B28R:C -> B29R:G: adjacent_5p upward } 0 9 {B29R:G -> B28R:C: adjacent_3p downward } 0 10 {B28R:C -> B42R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B42R:G -> B28R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B29R:G -> B41R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B41R:C -> B29R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B29R:G -> B42R:G: outward } 0 15 {B42R:G -> B29R:G: outward } 0 16 {B41R:C -> B42R:G: adjacent_5p } 0 17 {B42R:G -> B41R:C: adjacent_3p } 0 18 {B42R:G -> B43R:U: adjacent_5p upward } 0 19 {B43R:U -> B42R:G: adjacent_3p downward } 0 20 {B43R:U -> B44R:U: adjacent_5p upward } 0 21 {B44R:U -> B43R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B27R:A 0 1 B28R:C 0 2 B29R:G 0 3 B30R:G 0 4 B40R:C 0 5 B41R:C 0 6 B42R:G 0 7 B43R:U 0 [Edges] 0 {B27R:A -> B28R:C: adjacent_5p upward } 0 1 {B28R:C -> B27R:A: adjacent_3p downward } 0 2 {B27R:A -> B43R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B43R:U -> B27R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B28R:C -> B29R:G: adjacent_5p upward } 0 5 {B29R:G -> B28R:C: adjacent_3p downward } 0 6 {B28R:C -> B42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B42R:G -> B28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B29R:G -> B30R:G: adjacent_5p upward } 0 9 {B30R:G -> B29R:G: adjacent_3p downward } 0 10 {B29R:G -> B41R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B41R:C -> B29R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B29R:G -> B42R:G: outward } 0 13 {B42R:G -> B29R:G: outward } 0 14 {B30R:G -> B40R:C: pairing antiparallel cis Ww/Ww } 0 15 {B40R:C -> B30R:G: pairing antiparallel cis Ww/Ww } 0 16 {B40R:C -> B41R:C: adjacent_5p } 0 17 {B41R:C -> B40R:C: adjacent_3p } 0 18 {B41R:C -> B42R:G: adjacent_5p } 0 19 {B42R:G -> B41R:C: adjacent_3p } 0 20 {B42R:G -> B43R:U: adjacent_5p upward } 0 21 {B43R:U -> B42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B28R:C 0 1 B29R:G 0 2 B30R:G 0 3 B31R:U 0 4 B39R:A 0 5 B40R:C 0 6 B41R:C 0 7 B42R:G 0 [Edges] 0 {B28R:C -> B29R:G: adjacent_5p upward } 0 1 {B29R:G -> B28R:C: adjacent_3p downward } 0 2 {B28R:C -> B42R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B42R:G -> B28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B29R:G -> B30R:G: adjacent_5p upward } 0 5 {B30R:G -> B29R:G: adjacent_3p downward } 0 6 {B29R:G -> B41R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B41R:C -> B29R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B29R:G -> B42R:G: outward } 0 9 {B42R:G -> B29R:G: outward } 0 10 {B30R:G -> B31R:U: adjacent_5p upward } 0 11 {B31R:U -> B30R:G: adjacent_3p downward } 0 12 {B30R:G -> B40R:C: pairing antiparallel cis Ww/Ww } 0 13 {B40R:C -> B30R:G: pairing antiparallel cis Ww/Ww } 0 14 {B31R:U -> B39R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B39R:A -> B31R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B39R:A -> B40R:C: adjacent_5p upward } 0 17 {B40R:C -> B39R:A: adjacent_3p downward } 0 18 {B40R:C -> B41R:C: adjacent_5p } 0 19 {B41R:C -> B40R:C: adjacent_3p } 0 20 {B41R:C -> B42R:G: adjacent_5p } 0 21 {B42R:G -> B41R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B49R:G 0 1 B50R:C 0 2 B51R:U 0 3 B52R:G 0 4 B62R:C 0 5 B63R:A 0 6 B64R:G 0 7 B65R:C 0 [Edges] 0 {B49R:G -> B50R:C: adjacent_5p upward } 0 1 {B50R:C -> B49R:G: adjacent_3p downward } 0 2 {B49R:G -> B65R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B65R:C -> B49R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B50R:C -> B51R:U: adjacent_5p upward } 0 5 {B51R:U -> B50R:C: adjacent_3p downward } 0 6 {B50R:C -> B64R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B64R:G -> B50R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B51R:U -> B52R:G: adjacent_5p upward } 0 9 {B52R:G -> B51R:U: adjacent_3p downward } 0 10 {B51R:U -> B63R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B63R:A -> B51R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B52R:G -> B62R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B62R:C -> B52R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B52R:G -> B63R:A: outward } 0 15 {B63R:A -> B52R:G: outward } 0 16 {B62R:C -> B63R:A: adjacent_5p upward } 0 17 {B63R:A -> B62R:C: adjacent_3p downward } 0 18 {B63R:A -> B64R:G: adjacent_5p upward } 0 19 {B64R:G -> B63R:A: adjacent_3p downward } 0 20 {B64R:G -> B65R:C: adjacent_5p upward } 0 21 {B65R:C -> B64R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B50R:C 0 1 B51R:U 0 2 B52R:G 0 3 B53R:G 0 4 B61R:C 0 5 B62R:C 0 6 B63R:A 0 7 B64R:G 0 [Edges] 0 {B50R:C -> B51R:U: adjacent_5p upward } 0 1 {B51R:U -> B50R:C: adjacent_3p downward } 0 2 {B50R:C -> B64R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B64R:G -> B50R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B51R:U -> B52R:G: adjacent_5p upward } 0 5 {B52R:G -> B51R:U: adjacent_3p downward } 0 6 {B51R:U -> B63R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B63R:A -> B51R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B52R:G -> B53R:G: adjacent_5p upward } 0 9 {B53R:G -> B52R:G: adjacent_3p downward } 0 10 {B52R:G -> B62R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B62R:C -> B52R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B52R:G -> B63R:A: outward } 0 13 {B63R:A -> B52R:G: outward } 0 14 {B53R:G -> B61R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B61R:C -> B53R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B61R:C -> B62R:C: adjacent_5p upward } 0 17 {B62R:C -> B61R:C: adjacent_3p downward } 0 18 {B62R:C -> B63R:A: adjacent_5p upward } 0 19 {B63R:A -> B62R:C: adjacent_3p downward } 0 20 {B63R:A -> B64R:G: adjacent_5p upward } 0 21 {B64R:G -> B63R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 T4R:G 0 1 T5R:G 0 2 T6R:A 0 3 T7R:G 0 4 T66R:C 0 5 T67R:U 0 6 T68R:C 0 7 T69R:C 0 [Edges] 0 {T4R:G -> T5R:G: adjacent_5p upward } 0 1 {T5R:G -> T4R:G: adjacent_3p downward } 0 2 {T4R:G -> T69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {T69R:C -> T4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {T5R:G -> T6R:A: adjacent_5p upward } 0 5 {T6R:A -> T5R:G: adjacent_3p downward } 0 6 {T5R:G -> T68R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {T68R:C -> T5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {T6R:A -> T7R:G: adjacent_5p upward } 0 9 {T7R:G -> T6R:A: adjacent_3p downward } 0 10 {T6R:A -> T67R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {T67R:U -> T6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {T7R:G -> T66R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {T66R:C -> T7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {T66R:C -> T67R:U: adjacent_5p } 0 15 {T67R:U -> T66R:C: adjacent_3p } 0 16 {T67R:U -> T68R:C: adjacent_5p } 0 17 {T68R:C -> T67R:U: adjacent_3p } 0 18 {T68R:C -> T69R:C: adjacent_5p upward } 0 19 {T69R:C -> T68R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 T10R:G 0 1 T11R:C 0 2 T12R:G 0 3 T13R:C 0 4 T22R:G 0 5 T23R:C 0 6 T24R:G 0 7 T25R:C 0 [Edges] 0 {T10R:G -> T11R:C: adjacent_5p upward } 0 1 {T11R:C -> T10R:G: adjacent_3p downward } 0 2 {T10R:G -> T25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {T25R:C -> T10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {T11R:C -> T12R:G: adjacent_5p upward } 0 5 {T12R:G -> T11R:C: adjacent_3p downward } 0 6 {T11R:C -> T24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {T24R:G -> T11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {T12R:G -> T13R:C: adjacent_5p upward } 0 9 {T13R:C -> T12R:G: adjacent_3p downward } 0 10 {T12R:G -> T23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {T23R:C -> T12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {T12R:G -> T24R:G: outward } 0 13 {T24R:G -> T12R:G: outward } 0 14 {T13R:C -> T22R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {T22R:G -> T13R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {T22R:G -> T23R:C: adjacent_5p upward } 0 17 {T23R:C -> T22R:G: adjacent_3p downward } 0 18 {T23R:C -> T24R:G: adjacent_5p } 0 19 {T24R:G -> T23R:C: adjacent_3p } 0 20 {T24R:G -> T25R:C: adjacent_5p upward } 0 21 {T25R:C -> T24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 T26R:A 0 1 T27R:C 0 2 T28R:C 0 3 T29R:U 0 4 T41R:A 0 5 T42R:G 0 6 T43R:G 0 7 T44R:G 0 [Edges] 0 {T26R:A -> T27R:C: adjacent_5p upward } 0 1 {T27R:C -> T26R:A: adjacent_3p downward } 0 2 {T26R:A -> T44R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {T44R:G -> T26R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {T27R:C -> T28R:C: adjacent_5p } 0 5 {T28R:C -> T27R:C: adjacent_3p } 0 6 {T27R:C -> T43R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {T43R:G -> T27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {T28R:C -> T29R:U: adjacent_5p } 0 9 {T29R:U -> T28R:C: adjacent_3p } 0 10 {T28R:C -> T42R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {T42R:G -> T28R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {T29R:U -> T41R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {T41R:A -> T29R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {T29R:U -> T42R:G: outward } 0 15 {T42R:G -> T29R:U: outward } 0 16 {T41R:A -> T42R:G: adjacent_5p upward } 0 17 {T42R:G -> T41R:A: adjacent_3p downward } 0 18 {T42R:G -> T43R:G: adjacent_5p upward } 0 19 {T43R:G -> T42R:G: adjacent_3p downward } 0 20 {T43R:G -> T44R:G: adjacent_5p upward } 0 21 {T44R:G -> T43R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 T27R:C 0 1 T28R:C 0 2 T29R:U 0 3 T30R:C 0 4 T40R:G 0 5 T41R:A 0 6 T42R:G 0 7 T43R:G 0 [Edges] 0 {T27R:C -> T28R:C: adjacent_5p } 0 1 {T28R:C -> T27R:C: adjacent_3p } 0 2 {T27R:C -> T43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {T43R:G -> T27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {T28R:C -> T29R:U: adjacent_5p } 0 5 {T29R:U -> T28R:C: adjacent_3p } 0 6 {T28R:C -> T42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {T42R:G -> T28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {T29R:U -> T30R:C: adjacent_5p upward } 0 9 {T30R:C -> T29R:U: adjacent_3p downward } 0 10 {T29R:U -> T41R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {T41R:A -> T29R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {T29R:U -> T42R:G: outward } 0 13 {T42R:G -> T29R:U: outward } 0 14 {T30R:C -> T40R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {T40R:G -> T30R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {T40R:G -> T41R:A: adjacent_5p upward } 0 17 {T41R:A -> T40R:G: adjacent_3p downward } 0 18 {T41R:A -> T42R:G: adjacent_5p upward } 0 19 {T42R:G -> T41R:A: adjacent_3p downward } 0 20 {T42R:G -> T43R:G: adjacent_5p upward } 0 21 {T43R:G -> T42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 T28R:C 0 1 T29R:U 0 2 T30R:C 0 3 T31R:G 0 4 T39R:C 0 5 T40R:G 0 6 T41R:A 0 7 T42R:G 0 [Edges] 0 {T28R:C -> T29R:U: adjacent_5p } 0 1 {T29R:U -> T28R:C: adjacent_3p } 0 2 {T28R:C -> T42R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {T42R:G -> T28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {T29R:U -> T30R:C: adjacent_5p upward } 0 5 {T30R:C -> T29R:U: adjacent_3p downward } 0 6 {T29R:U -> T41R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {T41R:A -> T29R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {T29R:U -> T42R:G: outward } 0 9 {T42R:G -> T29R:U: outward } 0 10 {T30R:C -> T31R:G: adjacent_5p upward } 0 11 {T31R:G -> T30R:C: adjacent_3p downward } 0 12 {T30R:C -> T40R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {T40R:G -> T30R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {T31R:G -> T39R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {T39R:C -> T31R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {T31R:G -> T40R:G: outward } 0 17 {T40R:G -> T31R:G: outward } 0 18 {T39R:C -> T40R:G: adjacent_5p upward } 0 19 {T40R:G -> T39R:C: adjacent_3p downward } 0 20 {T40R:G -> T41R:A: adjacent_5p upward } 0 21 {T41R:A -> T40R:G: adjacent_3p downward } 0 22 {T41R:A -> T42R:G: adjacent_5p upward } 0 23 {T42R:G -> T41R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 T29R:U 0 1 T30R:C 0 2 T31R:G 0 3 T32R:U 0 4 T38R:A 0 5 T39R:C 0 6 T40R:G 0 7 T41R:A 0 [Edges] 0 {T29R:U -> T30R:C: adjacent_5p upward } 0 1 {T30R:C -> T29R:U: adjacent_3p downward } 0 2 {T29R:U -> T41R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {T41R:A -> T29R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {T30R:C -> T31R:G: adjacent_5p upward } 0 5 {T31R:G -> T30R:C: adjacent_3p downward } 0 6 {T30R:C -> T40R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {T40R:G -> T30R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {T31R:G -> T32R:U: adjacent_5p upward } 0 9 {T32R:U -> T31R:G: adjacent_3p downward } 0 10 {T31R:G -> T39R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {T39R:C -> T31R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {T31R:G -> T40R:G: outward } 0 13 {T40R:G -> T31R:G: outward } 0 14 {T32R:U -> T38R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {T38R:A -> T32R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {T38R:A -> T39R:C: adjacent_5p upward } 0 17 {T39R:C -> T38R:A: adjacent_3p downward } 0 18 {T39R:C -> T40R:G: adjacent_5p upward } 0 19 {T40R:G -> T39R:C: adjacent_3p downward } 0 20 {T40R:G -> T41R:A: adjacent_5p upward } 0 21 {T41R:A -> T40R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 T49R:G 0 1 T50R:C 0 2 T51R:U 0 3 T52R:G 0 4 T62R:C 0 5 T63R:A 0 6 T64R:G 0 7 T65R:U 0 [Edges] 0 {T49R:G -> T50R:C: adjacent_5p upward } 0 1 {T50R:C -> T49R:G: adjacent_3p downward } 0 2 {T49R:G -> T65R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {T65R:U -> T49R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {T50R:C -> T51R:U: adjacent_5p } 0 5 {T51R:U -> T50R:C: adjacent_3p } 0 6 {T50R:C -> T64R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {T64R:G -> T50R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {T51R:U -> T52R:G: adjacent_5p upward } 0 9 {T52R:G -> T51R:U: adjacent_3p downward } 0 10 {T51R:U -> T63R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {T63R:A -> T51R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {T52R:G -> T62R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {T62R:C -> T52R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {T52R:G -> T63R:A: outward } 0 15 {T63R:A -> T52R:G: outward } 0 16 {T62R:C -> T63R:A: adjacent_5p } 0 17 {T63R:A -> T62R:C: adjacent_3p } 0 18 {T63R:A -> T64R:G: adjacent_5p upward } 0 19 {T64R:G -> T63R:A: adjacent_3p downward } 0 20 {T64R:G -> T65R:U: adjacent_5p upward } 0 21 {T65R:U -> T64R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 T50R:C 0 1 T51R:U 0 2 T52R:G 0 3 T53R:G 0 4 T61R:C 0 5 T62R:C 0 6 T63R:A 0 7 T64R:G 0 [Edges] 0 {T50R:C -> T51R:U: adjacent_5p } 0 1 {T51R:U -> T50R:C: adjacent_3p } 0 2 {T50R:C -> T64R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {T64R:G -> T50R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {T51R:U -> T52R:G: adjacent_5p upward } 0 5 {T52R:G -> T51R:U: adjacent_3p downward } 0 6 {T51R:U -> T63R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {T63R:A -> T51R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {T52R:G -> T53R:G: adjacent_5p upward } 0 9 {T53R:G -> T52R:G: adjacent_3p downward } 0 10 {T52R:G -> T62R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {T62R:C -> T52R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {T52R:G -> T63R:A: outward } 0 13 {T63R:A -> T52R:G: outward } 0 14 {T53R:G -> T61R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {T61R:C -> T53R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {T61R:C -> T62R:C: adjacent_5p } 0 17 {T62R:C -> T61R:C: adjacent_3p } 0 18 {T62R:C -> T63R:A: adjacent_5p } 0 19 {T63R:A -> T62R:C: adjacent_3p } 0 20 {T63R:A -> T64R:G: adjacent_5p upward } 0 21 {T64R:G -> T63R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C102R:C 0 1 C103R:C 0 2 C104R:A 0 3 C105R:G 0 4 C154R:C 0 5 C155R:U 0 6 C156R:G 0 7 C157R:G 0 [Edges] 0 {C102R:C -> C103R:C: adjacent_5p } 0 1 {C103R:C -> C102R:C: adjacent_3p } 0 2 {C102R:C -> C157R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C157R:G -> C102R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C103R:C -> C104R:A: adjacent_5p upward } 0 5 {C104R:A -> C103R:C: adjacent_3p downward } 0 6 {C103R:C -> C156R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C156R:G -> C103R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C104R:A -> C105R:G: adjacent_5p upward } 0 9 {C105R:G -> C104R:A: adjacent_3p downward } 0 10 {C104R:A -> C155R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C155R:U -> C104R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C104R:A -> C156R:G: outward } 0 13 {C156R:G -> C104R:A: outward } 0 14 {C105R:G -> C154R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C154R:C -> C105R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C154R:C -> C155R:U: adjacent_5p } 0 17 {C155R:U -> C154R:C: adjacent_3p } 0 18 {C155R:U -> C156R:G: adjacent_5p } 0 19 {C156R:G -> C155R:U: adjacent_3p } 0 20 {C156R:G -> C157R:G: adjacent_5p upward } 0 21 {C157R:G -> C156R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C103R:C 0 1 C104R:A 0 2 C105R:G 0 3 C106R:G 0 4 C153R:A 0 5 C154R:C 0 6 C155R:U 0 7 C156R:G 0 [Edges] 0 {C103R:C -> C104R:A: adjacent_5p upward } 0 1 {C104R:A -> C103R:C: adjacent_3p downward } 0 2 {C103R:C -> C156R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C156R:G -> C103R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C104R:A -> C105R:G: adjacent_5p upward } 0 5 {C105R:G -> C104R:A: adjacent_3p downward } 0 6 {C104R:A -> C155R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C155R:U -> C104R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C104R:A -> C156R:G: outward } 0 9 {C156R:G -> C104R:A: outward } 0 10 {C105R:G -> C106R:G: adjacent_5p upward } 0 11 {C106R:G -> C105R:G: adjacent_3p downward } 0 12 {C105R:G -> C154R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C154R:C -> C105R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C106R:G -> C153R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {C153R:A -> C106R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {C153R:A -> C154R:C: adjacent_5p upward } 0 17 {C154R:C -> C153R:A: adjacent_3p downward } 0 18 {C154R:C -> C155R:U: adjacent_5p } 0 19 {C155R:U -> C154R:C: adjacent_3p } 0 20 {C155R:U -> C156R:G: adjacent_5p } 0 21 {C156R:G -> C155R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C109R:G 0 1 C110R:U 0 2 C111R:A 0 3 C112R:G 0 4 C126R:C 0 5 C127R:A 0 6 C128R:U 0 7 C129R:C 0 [Edges] 0 {C109R:G -> C110R:U: adjacent_5p inward } 0 1 {C110R:U -> C109R:G: adjacent_3p inward } 0 2 {C109R:G -> C129R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C129R:C -> C109R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C110R:U -> C111R:A: adjacent_5p } 0 5 {C111R:A -> C110R:U: adjacent_3p } 0 6 {C111R:A -> C112R:G: adjacent_5p } 0 7 {C112R:G -> C111R:A: adjacent_3p } 0 8 {C112R:G -> C126R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {C126R:C -> C112R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {C112R:G -> C127R:A: outward } 0 11 {C127R:A -> C112R:G: outward } 0 12 {C126R:C -> C127R:A: adjacent_5p upward } 0 13 {C127R:A -> C126R:C: adjacent_3p downward } 0 14 {C127R:A -> C128R:U: adjacent_5p upward } 0 15 {C128R:U -> C127R:A: adjacent_3p downward } 0 16 {C128R:U -> C129R:C: adjacent_5p } 0 17 {C129R:C -> C128R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 10 . . 4 . . . 9 . 12 . . 5 . . . 11 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 C112R:G 0 1 C113R:G 0 2 C114R:C 0 3 C115R:U 0 4 C123R:A 0 5 C124R:G 0 6 C125R:C 0 7 C126R:C 0 [Edges] 0 {C112R:G -> C113R:G: adjacent_5p upward } 0 1 {C113R:G -> C112R:G: adjacent_3p downward } 0 2 {C112R:G -> C126R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C126R:C -> C112R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C113R:G -> C114R:C: adjacent_5p upward } 0 5 {C114R:C -> C113R:G: adjacent_3p downward } 0 6 {C113R:G -> C125R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C125R:C -> C113R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C114R:C -> C115R:U: adjacent_5p upward } 0 9 {C115R:U -> C114R:C: adjacent_3p downward } 0 10 {C114R:C -> C124R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C124R:G -> C114R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C115R:U -> C123R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 13 {C123R:A -> C115R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 14 {C123R:A -> C124R:G: adjacent_5p upward } 0 15 {C124R:G -> C123R:A: adjacent_3p downward } 0 16 {C124R:G -> C125R:C: adjacent_5p upward } 0 17 {C125R:C -> C124R:G: adjacent_3p downward } 0 18 {C125R:C -> C126R:C: adjacent_5p } 0 19 {C126R:C -> C125R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C134R:A 0 1 C135R:A 0 2 C136R:A 0 3 C137R:G 0 4 C152R:C 0 5 C153R:A 0 6 C154R:C 0 7 C155R:U 0 [Edges] 0 {C134R:A -> C135R:A: adjacent_5p upward } 0 1 {C135R:A -> C134R:A: adjacent_3p downward } 0 2 {C134R:A -> C155R:U: pairing antiparallel cis one_hbond Bs/Ss } 0 3 {C155R:U -> C134R:A: pairing antiparallel cis one_hbond Ss/Bs } 0 4 {C135R:A -> C136R:A: adjacent_5p inward } 0 5 {C136R:A -> C135R:A: adjacent_3p inward } 0 6 {C136R:A -> C137R:G: adjacent_5p } 0 7 {C137R:G -> C136R:A: adjacent_3p } 0 8 {C137R:G -> C152R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {C152R:C -> C137R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {C137R:G -> C153R:A: outward } 0 11 {C153R:A -> C137R:G: outward } 0 12 {C152R:C -> C153R:A: adjacent_5p upward } 0 13 {C153R:A -> C152R:C: adjacent_3p downward } 0 14 {C153R:A -> C154R:C: adjacent_5p upward } 0 15 {C154R:C -> C153R:A: adjacent_3p downward } 0 16 {C154R:C -> C155R:U: adjacent_5p } 0 17 {C155R:U -> C154R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 10 . . 4 . . . 9 . 12 . . 5 . . . 11 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 C140R:A 0 1 C141R:G 0 2 C142R:C 0 3 C143R:G 0 4 C148R:A 0 5 C149R:G 0 6 C150R:C 0 7 C151R:U 0 [Edges] 0 {C140R:A -> C141R:G: adjacent_5p upward } 0 1 {C141R:G -> C140R:A: adjacent_3p downward } 0 2 {C140R:A -> C151R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C151R:U -> C140R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C141R:G -> C142R:C: adjacent_5p upward } 0 5 {C142R:C -> C141R:G: adjacent_3p downward } 0 6 {C141R:G -> C150R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C150R:C -> C141R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C142R:C -> C143R:G: adjacent_5p upward } 0 9 {C143R:G -> C142R:C: adjacent_3p downward } 0 10 {C142R:C -> C149R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C149R:G -> C142R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C143R:G -> C148R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {C148R:A -> C143R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {C148R:A -> C149R:G: adjacent_5p upward } 0 15 {C149R:G -> C148R:A: adjacent_3p downward } 0 16 {C149R:G -> C150R:C: adjacent_5p upward } 0 17 {C150R:C -> C149R:G: adjacent_3p downward } 0 18 {C150R:C -> C151R:U: adjacent_5p upward } 0 19 {C151R:U -> C150R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D302R:C 0 1 D303R:C 0 2 D304R:A 0 3 D305R:G 0 4 D354R:C 0 5 D355R:U 0 6 D356R:G 0 7 D357R:G 0 [Edges] 0 {D302R:C -> D303R:C: adjacent_5p } 0 1 {D303R:C -> D302R:C: adjacent_3p } 0 2 {D302R:C -> D357R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D357R:G -> D302R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D303R:C -> D304R:A: adjacent_5p upward } 0 5 {D304R:A -> D303R:C: adjacent_3p downward } 0 6 {D303R:C -> D356R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D356R:G -> D303R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D304R:A -> D305R:G: adjacent_5p upward } 0 9 {D305R:G -> D304R:A: adjacent_3p downward } 0 10 {D304R:A -> D355R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D355R:U -> D304R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {D304R:A -> D356R:G: outward } 0 13 {D356R:G -> D304R:A: outward } 0 14 {D305R:G -> D354R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D354R:C -> D305R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D354R:C -> D355R:U: adjacent_5p } 0 17 {D355R:U -> D354R:C: adjacent_3p } 0 18 {D355R:U -> D356R:G: adjacent_5p } 0 19 {D356R:G -> D355R:U: adjacent_3p } 0 20 {D356R:G -> D357R:G: adjacent_5p upward } 0 21 {D357R:G -> D356R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D303R:C 0 1 D304R:A 0 2 D305R:G 0 3 D306R:G 0 4 D353R:A 0 5 D354R:C 0 6 D355R:U 0 7 D356R:G 0 [Edges] 0 {D303R:C -> D304R:A: adjacent_5p upward } 0 1 {D304R:A -> D303R:C: adjacent_3p downward } 0 2 {D303R:C -> D356R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D356R:G -> D303R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D304R:A -> D305R:G: adjacent_5p upward } 0 5 {D305R:G -> D304R:A: adjacent_3p downward } 0 6 {D304R:A -> D355R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D355R:U -> D304R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D304R:A -> D356R:G: outward } 0 9 {D356R:G -> D304R:A: outward } 0 10 {D305R:G -> D306R:G: adjacent_5p upward } 0 11 {D306R:G -> D305R:G: adjacent_3p downward } 0 12 {D305R:G -> D354R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D354R:C -> D305R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D306R:G -> D353R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {D353R:A -> D306R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {D353R:A -> D354R:C: adjacent_5p upward } 0 17 {D354R:C -> D353R:A: adjacent_3p downward } 0 18 {D354R:C -> D355R:U: adjacent_5p } 0 19 {D355R:U -> D354R:C: adjacent_3p } 0 20 {D355R:U -> D356R:G: adjacent_5p } 0 21 {D356R:G -> D355R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D309R:G 0 1 D310R:U 0 2 D311R:A 0 3 D312R:G 0 4 D326R:C 0 5 D327R:A 0 6 D328R:U 0 7 D329R:C 0 [Edges] 0 {D309R:G -> D310R:U: adjacent_5p inward } 0 1 {D310R:U -> D309R:G: adjacent_3p inward } 0 2 {D309R:G -> D329R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D329R:C -> D309R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D310R:U -> D311R:A: adjacent_5p } 0 5 {D311R:A -> D310R:U: adjacent_3p } 0 6 {D311R:A -> D312R:G: adjacent_5p } 0 7 {D312R:G -> D311R:A: adjacent_3p } 0 8 {D312R:G -> D326R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {D326R:C -> D312R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {D312R:G -> D327R:A: outward } 0 11 {D327R:A -> D312R:G: outward } 0 12 {D326R:C -> D327R:A: adjacent_5p upward } 0 13 {D327R:A -> D326R:C: adjacent_3p downward } 0 14 {D327R:A -> D328R:U: adjacent_5p upward } 0 15 {D328R:U -> D327R:A: adjacent_3p downward } 0 16 {D328R:U -> D329R:C: adjacent_5p } 0 17 {D329R:C -> D328R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 10 . . 4 . . . 9 . 12 . . 5 . . . 11 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 D312R:G 0 1 D313R:G 0 2 D314R:C 0 3 D315R:U 0 4 D323R:A 0 5 D324R:G 0 6 D325R:C 0 7 D326R:C 0 [Edges] 0 {D312R:G -> D313R:G: adjacent_5p upward } 0 1 {D313R:G -> D312R:G: adjacent_3p downward } 0 2 {D312R:G -> D326R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D326R:C -> D312R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D313R:G -> D314R:C: adjacent_5p upward } 0 5 {D314R:C -> D313R:G: adjacent_3p downward } 0 6 {D313R:G -> D325R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D325R:C -> D313R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D314R:C -> D315R:U: adjacent_5p upward } 0 9 {D315R:U -> D314R:C: adjacent_3p downward } 0 10 {D314R:C -> D324R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D324R:G -> D314R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D315R:U -> D323R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 13 {D323R:A -> D315R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 14 {D323R:A -> D324R:G: adjacent_5p upward } 0 15 {D324R:G -> D323R:A: adjacent_3p downward } 0 16 {D324R:G -> D325R:C: adjacent_5p upward } 0 17 {D325R:C -> D324R:G: adjacent_3p downward } 0 18 {D325R:C -> D326R:C: adjacent_5p upward } 0 19 {D326R:C -> D325R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D334R:A 0 1 D335R:A 0 2 D336R:A 0 3 D337R:G 0 4 D352R:C 0 5 D353R:A 0 6 D354R:C 0 7 D355R:U 0 [Edges] 0 {D334R:A -> D335R:A: adjacent_5p upward } 0 1 {D335R:A -> D334R:A: adjacent_3p downward } 0 2 {D334R:A -> D355R:U: pairing antiparallel cis one_hbond Bs/Ss } 0 3 {D355R:U -> D334R:A: pairing antiparallel cis one_hbond Ss/Bs } 0 4 {D335R:A -> D336R:A: adjacent_5p } 0 5 {D336R:A -> D335R:A: adjacent_3p } 0 6 {D336R:A -> D337R:G: adjacent_5p } 0 7 {D337R:G -> D336R:A: adjacent_3p } 0 8 {D337R:G -> D352R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {D352R:C -> D337R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {D337R:G -> D353R:A: outward } 0 11 {D353R:A -> D337R:G: outward } 0 12 {D352R:C -> D353R:A: adjacent_5p upward } 0 13 {D353R:A -> D352R:C: adjacent_3p downward } 0 14 {D353R:A -> D354R:C: adjacent_5p upward } 0 15 {D354R:C -> D353R:A: adjacent_3p downward } 0 16 {D354R:C -> D355R:U: adjacent_5p } 0 17 {D355R:U -> D354R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 10 . . 4 . . . 9 . 12 . . 5 . . . 11 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 D340R:A 0 1 D341R:G 0 2 D342R:C 0 3 D343R:G 0 4 D348R:A 0 5 D349R:G 0 6 D350R:C 0 7 D351R:U 0 [Edges] 0 {D340R:A -> D341R:G: adjacent_5p upward } 0 1 {D341R:G -> D340R:A: adjacent_3p downward } 0 2 {D340R:A -> D351R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D351R:U -> D340R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {D341R:G -> D342R:C: adjacent_5p upward } 0 5 {D342R:C -> D341R:G: adjacent_3p downward } 0 6 {D341R:G -> D350R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D350R:C -> D341R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D342R:C -> D343R:G: adjacent_5p upward } 0 9 {D343R:G -> D342R:C: adjacent_3p downward } 0 10 {D342R:C -> D349R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D349R:G -> D342R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D343R:G -> D348R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {D348R:A -> D343R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {D348R:A -> D349R:G: adjacent_5p upward } 0 15 {D349R:G -> D348R:A: adjacent_3p downward } 0 16 {D349R:G -> D350R:C: adjacent_5p upward } 0 17 {D350R:C -> D349R:G: adjacent_3p downward } 0 18 {D350R:C -> D351R:U: adjacent_5p } 0 19 {D351R:U -> D350R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:C 0 2 A3R:C 0 3 A4R:C 0 4 A12R:G 0 5 A13R:G 0 6 A14R:G 0 7 A15R:C 0 [Edges] 0 {A1R:G -> A2R:C: adjacent_5p upward } 0 1 {A2R:C -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A15R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:C -> A3R:C: adjacent_5p upward } 0 5 {A3R:C -> A2R:C: adjacent_3p downward } 0 6 {A2R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A14R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:C -> A4R:C: adjacent_5p } 0 9 {A4R:C -> A3R:C: adjacent_3p } 0 10 {A3R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A13R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A12R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A12R:G -> A13R:G: adjacent_5p upward } 0 15 {A13R:G -> A12R:G: adjacent_3p downward } 0 16 {A13R:G -> A14R:G: adjacent_5p upward } 0 17 {A14R:G -> A13R:G: adjacent_3p downward } 0 18 {A14R:G -> A15R:C: adjacent_5p upward } 0 19 {A15R:C -> A14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2R:C 0 1 A3R:C 0 2 A4R:C 0 3 A5R:U 0 4 A11R:A 0 5 A12R:G 0 6 A13R:G 0 7 A14R:G 0 [Edges] 0 {A2R:C -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:C: adjacent_3p downward } 0 2 {A2R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A14R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:C: adjacent_5p } 0 5 {A4R:C -> A3R:C: adjacent_3p } 0 6 {A3R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A13R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:U: adjacent_5p } 0 9 {A5R:U -> A4R:C: adjacent_3p } 0 10 {A4R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A12R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A11R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A11R:A -> A12R:G: adjacent_5p upward } 0 15 {A12R:G -> A11R:A: adjacent_3p downward } 0 16 {A12R:G -> A13R:G: adjacent_5p upward } 0 17 {A13R:G -> A12R:G: adjacent_3p downward } 0 18 {A13R:G -> A14R:G: adjacent_5p upward } 0 19 {A14R:G -> A13R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:G 0 2 4R:A 0 3 5R:U 0 4 16R:G 0 5 17R:U 0 6 18R:C 0 7 19R:C 0 [Edges] 0 {2R:G -> 3R:G: adjacent_5p upward } 0 1 {3R:G -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {19R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:G -> 4R:A: adjacent_5p upward } 0 5 {4R:A -> 3R:G: adjacent_3p downward } 0 6 {3R:G -> 18R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {18R:C -> 3R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {4R:A -> 5R:U: adjacent_5p upward } 0 9 {5R:U -> 4R:A: adjacent_3p downward } 0 10 {4R:A -> 17R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {17R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {5R:U -> 16R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {16R:G -> 5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {16R:G -> 17R:U: adjacent_5p upward } 0 15 {17R:U -> 16R:G: adjacent_3p downward } 0 16 {17R:U -> 18R:C: adjacent_5p } 0 17 {18R:C -> 17R:U: adjacent_3p } 0 18 {18R:C -> 19R:C: adjacent_5p upward } 0 19 {19R:C -> 18R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 3R:G 0 1 4R:A 0 2 5R:U 0 3 6R:A 0 4 15R:U 0 5 16R:G 0 6 17R:U 0 7 18R:C 0 [Edges] 0 {3R:G -> 4R:A: adjacent_5p upward } 0 1 {4R:A -> 3R:G: adjacent_3p downward } 0 2 {3R:G -> 18R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {18R:C -> 3R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {4R:A -> 5R:U: adjacent_5p upward } 0 5 {5R:U -> 4R:A: adjacent_3p downward } 0 6 {4R:A -> 17R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {17R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {5R:U -> 6R:A: adjacent_5p upward } 0 9 {6R:A -> 5R:U: adjacent_3p downward } 0 10 {5R:U -> 16R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {16R:G -> 5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {6R:A -> 15R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {15R:U -> 6R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {15R:U -> 16R:G: adjacent_5p } 0 15 {16R:G -> 15R:U: adjacent_3p } 0 16 {16R:G -> 17R:U: adjacent_5p upward } 0 17 {17R:U -> 16R:G: adjacent_3p downward } 0 18 {17R:U -> 18R:C: adjacent_5p } 0 19 {18R:C -> 17R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 4R:A 0 1 5R:U 0 2 6R:A 0 3 7R:A 0 4 14R:U 0 5 15R:U 0 6 16R:G 0 7 17R:U 0 [Edges] 0 {4R:A -> 5R:U: adjacent_5p upward } 0 1 {5R:U -> 4R:A: adjacent_3p downward } 0 2 {4R:A -> 17R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {17R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {5R:U -> 6R:A: adjacent_5p upward } 0 5 {6R:A -> 5R:U: adjacent_3p downward } 0 6 {5R:U -> 16R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {16R:G -> 5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {6R:A -> 7R:A: adjacent_5p upward } 0 9 {7R:A -> 6R:A: adjacent_3p downward } 0 10 {6R:A -> 15R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {15R:U -> 6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {7R:A -> 14R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {14R:U -> 7R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {14R:U -> 15R:U: adjacent_5p } 0 15 {15R:U -> 14R:U: adjacent_3p } 0 16 {15R:U -> 16R:G: adjacent_5p } 0 17 {16R:G -> 15R:U: adjacent_3p } 0 18 {16R:G -> 17R:U: adjacent_5p upward } 0 19 {17R:U -> 16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 6R:A 0 1 7R:A 0 2 8R:C 0 3 9R:U 0 4 12R:G 0 5 13R:G 0 6 14R:U 0 7 15R:U 0 [Edges] 0 {6R:A -> 7R:A: adjacent_5p upward } 0 1 {7R:A -> 6R:A: adjacent_3p downward } 0 2 {6R:A -> 15R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {15R:U -> 6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {7R:A -> 8R:C: adjacent_5p upward } 0 5 {8R:C -> 7R:A: adjacent_3p downward } 0 6 {7R:A -> 14R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {14R:U -> 7R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {8R:C -> 9R:U: adjacent_5p upward } 0 9 {9R:U -> 8R:C: adjacent_3p downward } 0 10 {9R:U -> 12R:G: pairing parallel trans 87 Bs/Ww } 0 11 {12R:G -> 9R:U: pairing parallel trans 87 Ww/Bs } 0 12 {12R:G -> 13R:G: adjacent_5p } 0 13 {13R:G -> 12R:G: adjacent_3p } 0 14 {13R:G -> 14R:U: adjacent_5p upward } 0 15 {14R:U -> 13R:G: adjacent_3p downward } 0 16 {14R:U -> 15R:U: adjacent_5p } 0 17 {15R:U -> 14R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A80R:G 0 1 A90R:A 0 2 A101R:G 0 3 A102R:G 0 4 A112R:C 0 5 A111R:C 0 6 A120R:G 0 7 A130R:A 0 [Edges] 0 {A80R:G -> A90R:A: adjacent_5p } 0 1 {A90R:A -> A80R:G: adjacent_3p } 0 2 {A80R:G -> A120R:G: inward } 0 3 {A120R:G -> A80R:G: inward } 0 4 {A80R:G -> A130R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {A130R:A -> A80R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {A90R:A -> A101R:G: adjacent_5p upward } 0 7 {A101R:G -> A90R:A: adjacent_3p downward } 0 8 {A90R:A -> A120R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {A120R:G -> A90R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {A90R:A -> A130R:A: outward } 0 11 {A130R:A -> A90R:A: outward } 0 12 {A101R:G -> A102R:G: adjacent_5p upward } 0 13 {A102R:G -> A101R:G: adjacent_3p downward } 0 14 {A101R:G -> A111R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A111R:C -> A101R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A102R:G -> A112R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {A112R:C -> A102R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {A111R:C -> A112R:C: adjacent_3p } 0 19 {A112R:C -> A111R:C: adjacent_5p } 0 20 {A111R:C -> A120R:G: adjacent_5p upward } 0 21 {A120R:G -> A111R:C: adjacent_3p downward } 0 22 {A120R:G -> A130R:A: adjacent_5p } 0 23 {A130R:A -> A120R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 19 . . 5 . . 15 . 18 . 20 . 6 3 9 . . . 21 . 22 7 5 11 . . . . 23 . [GraphModel] [Vertices] 0 A90R:A 0 1 A101R:G 0 2 A102R:G 0 3 A103R:C 0 4 A113R:G 0 5 A112R:C 0 6 A111R:C 0 7 A120R:G 0 [Edges] 0 {A90R:A -> A101R:G: adjacent_5p upward } 0 1 {A101R:G -> A90R:A: adjacent_3p downward } 0 2 {A90R:A -> A120R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A120R:G -> A90R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A101R:G -> A102R:G: adjacent_5p upward } 0 5 {A102R:G -> A101R:G: adjacent_3p downward } 0 6 {A101R:G -> A111R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A111R:C -> A101R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A102R:G -> A103R:C: adjacent_5p upward } 0 9 {A103R:C -> A102R:G: adjacent_3p downward } 0 10 {A102R:G -> A112R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A112R:C -> A102R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A103R:C -> A113R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A113R:G -> A103R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A111R:C -> A112R:C: adjacent_3p } 0 15 {A112R:C -> A111R:C: adjacent_5p } 0 16 {A111R:C -> A120R:G: adjacent_5p upward } 0 17 {A120R:G -> A111R:C: adjacent_3p downward } 0 18 {A112R:C -> A113R:G: adjacent_3p downward } 0 19 {A113R:G -> A112R:C: adjacent_5p upward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 19 . . 5 . . 11 . 18 . 15 . 6 . 7 . . . 14 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A101R:G 0 1 A102R:G 0 2 A103R:C 0 3 A104R:C 0 4 A114R:G 0 5 A113R:G 0 6 A112R:C 0 7 A111R:C 0 [Edges] 0 {A101R:G -> A102R:G: adjacent_5p upward } 0 1 {A102R:G -> A101R:G: adjacent_3p downward } 0 2 {A101R:G -> A111R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A111R:C -> A101R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A102R:G -> A103R:C: adjacent_5p upward } 0 5 {A103R:C -> A102R:G: adjacent_3p downward } 0 6 {A102R:G -> A112R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A112R:C -> A102R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A103R:C -> A104R:C: adjacent_5p } 0 9 {A104R:C -> A103R:C: adjacent_3p } 0 10 {A103R:C -> A113R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A113R:G -> A103R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A104R:C -> A114R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A114R:G -> A104R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A111R:C -> A112R:C: adjacent_3p } 0 15 {A112R:C -> A111R:C: adjacent_5p } 0 16 {A112R:C -> A113R:G: adjacent_3p downward } 0 17 {A113R:G -> A112R:C: adjacent_5p upward } 0 18 {A113R:G -> A114R:G: adjacent_3p downward } 0 19 {A114R:G -> A113R:G: adjacent_5p upward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 19 . . 5 . . 11 . 18 . 17 . 6 . 7 . . . 16 . 15 7 3 . . . . . 14 . [GraphModel] [Vertices] 0 A102R:G 0 1 A103R:C 0 2 A104R:C 0 3 A21.LR:G 0 4 A24.LR:A 0 5 A114R:G 0 6 A113R:G 0 7 A112R:C 0 [Edges] 0 {A21.LR:G -> A24.LR:A: pairing antiparallel trans one_hbond Sw/Hh } 0 1 {A24.LR:A -> A21.LR:G: pairing antiparallel trans one_hbond Hh/Sw } 0 2 {A21.LR:G -> A104R:C: adjacent_3p downward } 0 3 {A104R:C -> A21.LR:G: adjacent_5p upward } 0 4 {A21.LR:G -> A114R:G: outward } 0 5 {A114R:G -> A21.LR:G: outward } 0 6 {A24.LR:A -> A114R:G: adjacent_5p upward } 0 7 {A114R:G -> A24.LR:A: adjacent_3p downward } 0 8 {A102R:G -> A103R:C: adjacent_5p upward } 0 9 {A103R:C -> A102R:G: adjacent_3p downward } 0 10 {A102R:G -> A112R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A112R:C -> A102R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A103R:C -> A104R:C: adjacent_5p } 0 13 {A104R:C -> A103R:C: adjacent_3p } 0 14 {A103R:C -> A113R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A113R:G -> A103R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A104R:C -> A114R:G: pairing antiparallel cis XIX Ww/Ww } 0 17 {A114R:G -> A104R:C: pairing antiparallel cis XIX Ww/Ww } 0 18 {A112R:C -> A113R:G: adjacent_3p downward } 0 19 {A113R:G -> A112R:C: adjacent_5p upward } 0 20 {A113R:G -> A114R:G: adjacent_3p downward } 0 21 {A114R:G -> A113R:G: adjacent_5p upward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 8 . . . . . 10 1 9 . 12 . . . 14 . 2 . 13 . 3 . 16 . . 3 . . 2 . 0 4 . . 4 . . . 1 . 6 . . 5 . . 17 5 7 . 21 . 6 . 15 . . . 20 . 19 7 11 . . . . . 18 . [GraphModel] [Vertices] 0 C70R:U 0 1 C80R:G 0 2 C90R:A 0 3 C101R:G 0 4 C111R:C 0 5 C120R:G 0 6 C130R:A 0 7 C140R:A 0 [Edges] 0 {C70R:U -> C80R:G: adjacent_5p } 0 1 {C80R:G -> C70R:U: adjacent_3p } 0 2 {C70R:U -> C140R:A: pairing antiparallel cis one_hbond Bs/Wh } 0 3 {C140R:A -> C70R:U: pairing antiparallel cis one_hbond Wh/Bs } 0 4 {C80R:G -> C90R:A: adjacent_5p } 0 5 {C90R:A -> C80R:G: adjacent_3p } 0 6 {C80R:G -> C120R:G: inward } 0 7 {C120R:G -> C80R:G: inward } 0 8 {C80R:G -> C130R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {C130R:A -> C80R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {C90R:A -> C101R:G: adjacent_5p upward } 0 11 {C101R:G -> C90R:A: adjacent_3p downward } 0 12 {C90R:A -> C120R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {C120R:G -> C90R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {C90R:A -> C130R:A: outward } 0 15 {C130R:A -> C90R:A: outward } 0 16 {C101R:G -> C111R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {C111R:C -> C101R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {C111R:C -> C120R:G: adjacent_5p upward } 0 19 {C120R:G -> C111R:C: adjacent_3p downward } 0 20 {C120R:G -> C130R:A: adjacent_5p } 0 21 {C130R:A -> C120R:G: adjacent_3p } 0 22 {C130R:A -> C140R:A: adjacent_5p upward } 0 23 {C140R:A -> C130R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . 7 13 . 19 . 20 . 6 . 9 15 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 C80R:G 0 1 C90R:A 0 2 C101R:G 0 3 C102R:G 0 4 C112R:C 0 5 C111R:C 0 6 C120R:G 0 7 C130R:A 0 [Edges] 0 {C80R:G -> C90R:A: adjacent_5p } 0 1 {C90R:A -> C80R:G: adjacent_3p } 0 2 {C80R:G -> C120R:G: inward } 0 3 {C120R:G -> C80R:G: inward } 0 4 {C80R:G -> C130R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {C130R:A -> C80R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {C90R:A -> C101R:G: adjacent_5p upward } 0 7 {C101R:G -> C90R:A: adjacent_3p downward } 0 8 {C90R:A -> C120R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {C120R:G -> C90R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {C90R:A -> C130R:A: outward } 0 11 {C130R:A -> C90R:A: outward } 0 12 {C101R:G -> C102R:G: adjacent_5p upward } 0 13 {C102R:G -> C101R:G: adjacent_3p downward } 0 14 {C101R:G -> C111R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C111R:C -> C101R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C102R:G -> C112R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {C112R:C -> C102R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {C111R:C -> C112R:C: adjacent_3p downward } 0 19 {C112R:C -> C111R:C: adjacent_5p upward } 0 20 {C111R:C -> C120R:G: adjacent_5p upward } 0 21 {C120R:G -> C111R:C: adjacent_3p downward } 0 22 {C120R:G -> C130R:A: adjacent_5p } 0 23 {C130R:A -> C120R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 19 . . 5 . . 15 . 18 . 20 . 6 3 9 . . . 21 . 22 7 5 11 . . . . 23 . [GraphModel] [Vertices] 0 C90R:A 0 1 C101R:G 0 2 C102R:G 0 3 C103R:C 0 4 C113R:G 0 5 C112R:C 0 6 C111R:C 0 7 C120R:G 0 [Edges] 0 {C90R:A -> C101R:G: adjacent_5p upward } 0 1 {C101R:G -> C90R:A: adjacent_3p downward } 0 2 {C90R:A -> C120R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {C120R:G -> C90R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {C101R:G -> C102R:G: adjacent_5p upward } 0 5 {C102R:G -> C101R:G: adjacent_3p downward } 0 6 {C101R:G -> C111R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C111R:C -> C101R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C102R:G -> C103R:C: adjacent_5p upward } 0 9 {C103R:C -> C102R:G: adjacent_3p downward } 0 10 {C102R:G -> C112R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C112R:C -> C102R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C103R:C -> C113R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C113R:G -> C103R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C111R:C -> C112R:C: adjacent_3p downward } 0 15 {C112R:C -> C111R:C: adjacent_5p upward } 0 16 {C111R:C -> C120R:G: adjacent_5p upward } 0 17 {C120R:G -> C111R:C: adjacent_3p downward } 0 18 {C112R:C -> C113R:G: adjacent_3p downward } 0 19 {C113R:G -> C112R:C: adjacent_5p upward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 19 . . 5 . . 11 . 18 . 15 . 6 . 7 . . . 14 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 C101R:G 0 1 C102R:G 0 2 C103R:C 0 3 C104R:C 0 4 C114R:G 0 5 C113R:G 0 6 C112R:C 0 7 C111R:C 0 [Edges] 0 {C101R:G -> C102R:G: adjacent_5p upward } 0 1 {C102R:G -> C101R:G: adjacent_3p downward } 0 2 {C101R:G -> C111R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C111R:C -> C101R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C102R:G -> C103R:C: adjacent_5p upward } 0 5 {C103R:C -> C102R:G: adjacent_3p downward } 0 6 {C102R:G -> C112R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C112R:C -> C102R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C103R:C -> C104R:C: adjacent_5p upward } 0 9 {C104R:C -> C103R:C: adjacent_3p downward } 0 10 {C103R:C -> C113R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C113R:G -> C103R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C104R:C -> C114R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C114R:G -> C104R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C111R:C -> C112R:C: adjacent_3p downward } 0 15 {C112R:C -> C111R:C: adjacent_5p upward } 0 16 {C112R:C -> C113R:G: adjacent_3p downward } 0 17 {C113R:G -> C112R:C: adjacent_5p upward } 0 18 {C113R:G -> C114R:G: adjacent_3p downward } 0 19 {C114R:G -> C113R:G: adjacent_5p upward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 19 . . 5 . . 11 . 18 . 17 . 6 . 7 . . . 16 . 15 7 3 . . . . . 14 . [GraphModel] [Vertices] 0 C102R:G 0 1 C103R:C 0 2 C104R:C 0 3 C21.LR:G 0 4 C24.LR:A 0 5 C114R:G 0 6 C113R:G 0 7 C112R:C 0 [Edges] 0 {C21.LR:G -> C24.LR:A: pairing antiparallel trans one_hbond Sw/Hh } 0 1 {C24.LR:A -> C21.LR:G: pairing antiparallel trans one_hbond Hh/Sw } 0 2 {C21.LR:G -> C104R:C: adjacent_3p downward } 0 3 {C104R:C -> C21.LR:G: adjacent_5p upward } 0 4 {C21.LR:G -> C114R:G: outward } 0 5 {C114R:G -> C21.LR:G: outward } 0 6 {C24.LR:A -> C114R:G: adjacent_5p upward } 0 7 {C114R:G -> C24.LR:A: adjacent_3p downward } 0 8 {C102R:G -> C103R:C: adjacent_5p upward } 0 9 {C103R:C -> C102R:G: adjacent_3p downward } 0 10 {C102R:G -> C112R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C112R:C -> C102R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C103R:C -> C104R:C: adjacent_5p upward } 0 13 {C104R:C -> C103R:C: adjacent_3p downward } 0 14 {C103R:C -> C113R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {C113R:G -> C103R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {C104R:C -> C114R:G: pairing antiparallel cis XIX Ww/Ww } 0 17 {C114R:G -> C104R:C: pairing antiparallel cis XIX Ww/Ww } 0 18 {C112R:C -> C113R:G: adjacent_3p downward } 0 19 {C113R:G -> C112R:C: adjacent_5p upward } 0 20 {C113R:G -> C114R:G: adjacent_3p downward } 0 21 {C114R:G -> C113R:G: adjacent_5p upward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 8 . . . . . 10 1 9 . 12 . . . 14 . 2 . 13 . 3 . 16 . . 3 . . 2 . 0 4 . . 4 . . . 1 . 6 . . 5 . . 17 5 7 . 21 . 6 . 15 . . . 20 . 19 7 11 . . . . . 18 . [GraphModel] [Vertices] 0 E70R:U 0 1 E80R:G 0 2 E90R:A 0 3 E101R:G 0 4 E111R:C 0 5 E120R:G 0 6 E130R:A 0 7 E140R:A 0 [Edges] 0 {E70R:U -> E80R:G: adjacent_5p pairing parallel cis one_hbond Ww/Hw } 0 1 {E80R:G -> E70R:U: adjacent_3p pairing parallel cis one_hbond Hw/Ww } 0 2 {E70R:U -> E140R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 3 {E140R:A -> E70R:U: pairing antiparallel cis one_hbond Wh/Ss } 0 4 {E80R:G -> E90R:A: adjacent_5p } 0 5 {E90R:A -> E80R:G: adjacent_3p } 0 6 {E80R:G -> E120R:G: inward } 0 7 {E120R:G -> E80R:G: inward } 0 8 {E80R:G -> E130R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {E130R:A -> E80R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {E90R:A -> E101R:G: adjacent_5p upward } 0 11 {E101R:G -> E90R:A: adjacent_3p downward } 0 12 {E90R:A -> E120R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {E120R:G -> E90R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {E90R:A -> E130R:A: outward } 0 15 {E130R:A -> E90R:A: outward } 0 16 {E101R:G -> E111R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {E111R:C -> E101R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {E111R:C -> E120R:G: adjacent_5p upward } 0 19 {E120R:G -> E111R:C: adjacent_3p downward } 0 20 {E120R:G -> E130R:A: adjacent_5p } 0 21 {E130R:A -> E120R:G: adjacent_3p } 0 22 {E130R:A -> E140R:A: adjacent_5p upward } 0 23 {E140R:A -> E130R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . 7 13 . 19 . 20 . 6 . 9 15 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 E80R:G 0 1 E90R:A 0 2 E101R:G 0 3 E102R:G 0 4 E112R:C 0 5 E111R:C 0 6 E120R:G 0 7 E130R:A 0 [Edges] 0 {E80R:G -> E90R:A: adjacent_5p } 0 1 {E90R:A -> E80R:G: adjacent_3p } 0 2 {E80R:G -> E120R:G: inward } 0 3 {E120R:G -> E80R:G: inward } 0 4 {E80R:G -> E130R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {E130R:A -> E80R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {E90R:A -> E101R:G: adjacent_5p upward } 0 7 {E101R:G -> E90R:A: adjacent_3p downward } 0 8 {E90R:A -> E120R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {E120R:G -> E90R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {E90R:A -> E130R:A: outward } 0 11 {E130R:A -> E90R:A: outward } 0 12 {E101R:G -> E102R:G: adjacent_5p upward } 0 13 {E102R:G -> E101R:G: adjacent_3p downward } 0 14 {E101R:G -> E111R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {E111R:C -> E101R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {E102R:G -> E112R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {E112R:C -> E102R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {E111R:C -> E112R:C: adjacent_3p } 0 19 {E112R:C -> E111R:C: adjacent_5p } 0 20 {E111R:C -> E120R:G: adjacent_5p upward } 0 21 {E120R:G -> E111R:C: adjacent_3p downward } 0 22 {E120R:G -> E130R:A: adjacent_5p } 0 23 {E130R:A -> E120R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 19 . . 5 . . 15 . 18 . 20 . 6 3 9 . . . 21 . 22 7 5 11 . . . . 23 . [GraphModel] [Vertices] 0 E90R:A 0 1 E101R:G 0 2 E102R:G 0 3 E103R:C 0 4 E113R:G 0 5 E112R:C 0 6 E111R:C 0 7 E120R:G 0 [Edges] 0 {E90R:A -> E101R:G: adjacent_5p upward } 0 1 {E101R:G -> E90R:A: adjacent_3p downward } 0 2 {E90R:A -> E120R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {E120R:G -> E90R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {E101R:G -> E102R:G: adjacent_5p upward } 0 5 {E102R:G -> E101R:G: adjacent_3p downward } 0 6 {E101R:G -> E111R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E111R:C -> E101R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E102R:G -> E103R:C: adjacent_5p upward } 0 9 {E103R:C -> E102R:G: adjacent_3p downward } 0 10 {E102R:G -> E112R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E112R:C -> E102R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E103R:C -> E113R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {E113R:G -> E103R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {E111R:C -> E112R:C: adjacent_3p } 0 15 {E112R:C -> E111R:C: adjacent_5p } 0 16 {E111R:C -> E120R:G: adjacent_5p upward } 0 17 {E120R:G -> E111R:C: adjacent_3p downward } 0 18 {E112R:C -> E113R:G: adjacent_3p downward } 0 19 {E113R:G -> E112R:C: adjacent_5p upward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 19 . . 5 . . 11 . 18 . 15 . 6 . 7 . . . 14 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 E101R:G 0 1 E102R:G 0 2 E103R:C 0 3 E104R:C 0 4 E114R:G 0 5 E113R:G 0 6 E112R:C 0 7 E111R:C 0 [Edges] 0 {E101R:G -> E102R:G: adjacent_5p upward } 0 1 {E102R:G -> E101R:G: adjacent_3p downward } 0 2 {E101R:G -> E111R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E111R:C -> E101R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E102R:G -> E103R:C: adjacent_5p upward } 0 5 {E103R:C -> E102R:G: adjacent_3p downward } 0 6 {E102R:G -> E112R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E112R:C -> E102R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E103R:C -> E104R:C: adjacent_5p } 0 9 {E104R:C -> E103R:C: adjacent_3p } 0 10 {E103R:C -> E113R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {E113R:G -> E103R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {E104R:C -> E114R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {E114R:G -> E104R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {E111R:C -> E112R:C: adjacent_3p } 0 15 {E112R:C -> E111R:C: adjacent_5p } 0 16 {E112R:C -> E113R:G: adjacent_3p downward } 0 17 {E113R:G -> E112R:C: adjacent_5p upward } 0 18 {E113R:G -> E114R:G: adjacent_3p downward } 0 19 {E114R:G -> E113R:G: adjacent_5p upward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 19 . . 5 . . 11 . 18 . 17 . 6 . 7 . . . 16 . 15 7 3 . . . . . 14 . [GraphModel] [Vertices] 0 E102R:G 0 1 E103R:C 0 2 E104R:C 0 3 E21.LR:G 0 4 E24.LR:A 0 5 E114R:G 0 6 E113R:G 0 7 E112R:C 0 [Edges] 0 {E21.LR:G -> E24.LR:A: pairing antiparallel trans one_hbond Sw/Hh } 0 1 {E24.LR:A -> E21.LR:G: pairing antiparallel trans one_hbond Hh/Sw } 0 2 {E21.LR:G -> E104R:C: adjacent_3p downward } 0 3 {E104R:C -> E21.LR:G: adjacent_5p upward } 0 4 {E21.LR:G -> E114R:G: outward } 0 5 {E114R:G -> E21.LR:G: outward } 0 6 {E24.LR:A -> E114R:G: adjacent_5p } 0 7 {E114R:G -> E24.LR:A: adjacent_3p } 0 8 {E102R:G -> E103R:C: adjacent_5p upward } 0 9 {E103R:C -> E102R:G: adjacent_3p downward } 0 10 {E102R:G -> E112R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E112R:C -> E102R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E103R:C -> E104R:C: adjacent_5p } 0 13 {E104R:C -> E103R:C: adjacent_3p } 0 14 {E103R:C -> E113R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {E113R:G -> E103R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {E104R:C -> E114R:G: pairing antiparallel cis XIX Ww/Ww } 0 17 {E114R:G -> E104R:C: pairing antiparallel cis XIX Ww/Ww } 0 18 {E112R:C -> E113R:G: adjacent_3p downward } 0 19 {E113R:G -> E112R:C: adjacent_5p upward } 0 20 {E113R:G -> E114R:G: adjacent_3p downward } 0 21 {E114R:G -> E113R:G: adjacent_5p upward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 8 . . . . . 10 1 9 . 12 . . . 14 . 2 . 13 . 3 . 16 . . 3 . . 2 . 0 4 . . 4 . . . 1 . 6 . . 5 . . 17 5 7 . 21 . 6 . 15 . . . 20 . 19 7 11 . . . . . 18 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:G 0 3 A5R:C 0 4 A26R:G 0 5 A27R:C 0 6 A28R:G 0 7 A29R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A29R:C: pairing antiparallel cis 128 Ww/Ww } 0 3 {A29R:C -> A2R:G: pairing antiparallel cis 128 Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A28R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A28R:G -> A3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A4R:G -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A27R:C: pairing antiparallel cis 128 Ww/Ww } 0 11 {A27R:C -> A4R:G: pairing antiparallel cis 128 Ww/Ww } 0 12 {A4R:G -> A28R:G: outward } 0 13 {A28R:G -> A4R:G: outward } 0 14 {A5R:C -> A26R:G: pairing antiparallel cis 128 Ww/Ww } 0 15 {A26R:G -> A5R:C: pairing antiparallel cis 128 Ww/Ww } 0 16 {A26R:G -> A27R:C: adjacent_5p upward } 0 17 {A27R:C -> A26R:G: adjacent_3p downward } 0 18 {A27R:C -> A28R:G: adjacent_5p upward } 0 19 {A28R:G -> A27R:C: adjacent_3p downward } 0 20 {A28R:G -> A29R:C: adjacent_5p upward } 0 21 {A29R:C -> A28R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:C 0 3 A6R:G 0 4 A25R:A 0 5 A26R:G 0 6 A27R:C 0 7 A28R:G 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> A28R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A28R:G -> A3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A4R:G -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A27R:C: pairing antiparallel cis 128 Ww/Ww } 0 7 {A27R:C -> A4R:G: pairing antiparallel cis 128 Ww/Ww } 0 8 {A4R:G -> A28R:G: outward } 0 9 {A28R:G -> A4R:G: outward } 0 10 {A5R:C -> A6R:G: adjacent_5p upward } 0 11 {A6R:G -> A5R:C: adjacent_3p downward } 0 12 {A5R:C -> A26R:G: pairing antiparallel cis 128 Ww/Ww } 0 13 {A26R:G -> A5R:C: pairing antiparallel cis 128 Ww/Ww } 0 14 {A6R:G -> A25R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {A25R:A -> A6R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {A25R:A -> A26R:G: adjacent_5p upward } 0 17 {A26R:G -> A25R:A: adjacent_3p downward } 0 18 {A26R:G -> A27R:C: adjacent_5p upward } 0 19 {A27R:C -> A26R:G: adjacent_3p downward } 0 20 {A27R:C -> A28R:G: adjacent_5p upward } 0 21 {A28R:G -> A27R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:C 0 2 A6R:G 0 3 A7R:A 0 4 A24R:G 0 5 A25R:A 0 6 A26R:G 0 7 A27R:C 0 [Edges] 0 {A4R:G -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A27R:C: pairing antiparallel cis 128 Ww/Ww } 0 3 {A27R:C -> A4R:G: pairing antiparallel cis 128 Ww/Ww } 0 4 {A5R:C -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> A26R:G: pairing antiparallel cis 128 Ww/Ww } 0 7 {A26R:G -> A5R:C: pairing antiparallel cis 128 Ww/Ww } 0 8 {A6R:G -> A7R:A: adjacent_5p } 0 9 {A7R:A -> A6R:G: adjacent_3p } 0 10 {A6R:G -> A24R:G: inward } 0 11 {A24R:G -> A6R:G: inward } 0 12 {A6R:G -> A25R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A25R:A -> A6R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A7R:A -> A24R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {A24R:G -> A7R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {A7R:A -> A25R:A: outward } 0 17 {A25R:A -> A7R:A: outward } 0 18 {A24R:G -> A25R:A: adjacent_5p } 0 19 {A25R:A -> A24R:G: adjacent_3p } 0 20 {A25R:A -> A26R:G: adjacent_5p upward } 0 21 {A26R:G -> A25R:A: adjacent_3p downward } 0 22 {A26R:G -> A27R:C: adjacent_5p upward } 0 23 {A27R:C -> A26R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 12 . . 3 . . 9 . 14 16 . . 4 . . 11 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:G 0 2 A7R:A 0 3 A8R:A 0 4 A23R:C 0 5 A24R:G 0 6 A25R:A 0 7 A26R:G 0 [Edges] 0 {A5R:C -> A6R:G: adjacent_5p upward } 0 1 {A6R:G -> A5R:C: adjacent_3p downward } 0 2 {A5R:C -> A26R:G: pairing antiparallel cis 128 Ww/Ww } 0 3 {A26R:G -> A5R:C: pairing antiparallel cis 128 Ww/Ww } 0 4 {A6R:G -> A7R:A: adjacent_5p } 0 5 {A7R:A -> A6R:G: adjacent_3p } 0 6 {A6R:G -> A24R:G: inward } 0 7 {A24R:G -> A6R:G: inward } 0 8 {A6R:G -> A25R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {A25R:A -> A6R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {A7R:A -> A8R:A: adjacent_5p upward } 0 11 {A8R:A -> A7R:A: adjacent_3p downward } 0 12 {A7R:A -> A24R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {A24R:G -> A7R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {A7R:A -> A25R:A: outward } 0 15 {A25R:A -> A7R:A: outward } 0 16 {A8R:A -> A23R:C: pairing antiparallel cis 78 Bh/Ww } 0 17 {A23R:C -> A8R:A: pairing antiparallel cis 78 Ww/Bh } 0 18 {A23R:C -> A24R:G: adjacent_5p upward } 0 19 {A24R:G -> A23R:C: adjacent_3p downward } 0 20 {A24R:G -> A25R:A: adjacent_5p } 0 21 {A25R:A -> A24R:G: adjacent_3p } 0 22 {A25R:A -> A26R:G: adjacent_5p upward } 0 23 {A26R:G -> A25R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . 7 13 . 19 . 20 . 6 . 9 15 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:A 0 2 A8R:A 0 3 A9R:G 0 4 A22R:C 0 5 A23R:C 0 6 A24R:G 0 7 A25R:A 0 [Edges] 0 {A6R:G -> A7R:A: adjacent_5p } 0 1 {A7R:A -> A6R:G: adjacent_3p } 0 2 {A6R:G -> A24R:G: inward } 0 3 {A24R:G -> A6R:G: inward } 0 4 {A6R:G -> A25R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {A25R:A -> A6R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {A7R:A -> A8R:A: adjacent_5p upward } 0 7 {A8R:A -> A7R:A: adjacent_3p downward } 0 8 {A7R:A -> A24R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {A24R:G -> A7R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {A7R:A -> A25R:A: outward } 0 11 {A25R:A -> A7R:A: outward } 0 12 {A8R:A -> A9R:G: adjacent_5p upward } 0 13 {A9R:G -> A8R:A: adjacent_3p downward } 0 14 {A8R:A -> A23R:C: pairing antiparallel cis 78 Bh/Ww } 0 15 {A23R:C -> A8R:A: pairing antiparallel cis 78 Ww/Bh } 0 16 {A9R:G -> A22R:C: pairing antiparallel cis 128 Ww/Ww } 0 17 {A22R:C -> A9R:G: pairing antiparallel cis 128 Ww/Ww } 0 18 {A22R:C -> A23R:C: adjacent_5p upward } 0 19 {A23R:C -> A22R:C: adjacent_3p downward } 0 20 {A23R:C -> A24R:G: adjacent_5p upward } 0 21 {A24R:G -> A23R:C: adjacent_3p downward } 0 22 {A24R:G -> A25R:A: adjacent_5p } 0 23 {A25R:A -> A24R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 18 . . 5 . . 15 . 19 . 20 . 6 3 9 . . . 21 . 22 7 5 11 . . . . 23 . [GraphModel] [Vertices] 0 A7R:A 0 1 A8R:A 0 2 A9R:G 0 3 A10R:G 0 4 A21R:C 0 5 A22R:C 0 6 A23R:C 0 7 A24R:G 0 [Edges] 0 {A7R:A -> A8R:A: adjacent_5p upward } 0 1 {A8R:A -> A7R:A: adjacent_3p downward } 0 2 {A7R:A -> A24R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A24R:G -> A7R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A8R:A -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:A: adjacent_3p downward } 0 6 {A8R:A -> A23R:C: pairing antiparallel cis 78 Bh/Ww } 0 7 {A23R:C -> A8R:A: pairing antiparallel cis 78 Ww/Bh } 0 8 {A9R:G -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> A22R:C: pairing antiparallel cis 128 Ww/Ww } 0 11 {A22R:C -> A9R:G: pairing antiparallel cis 128 Ww/Ww } 0 12 {A10R:G -> A21R:C: pairing antiparallel cis 128 Ww/Ww } 0 13 {A21R:C -> A10R:G: pairing antiparallel cis 128 Ww/Ww } 0 14 {A21R:C -> A22R:C: adjacent_5p upward } 0 15 {A22R:C -> A21R:C: adjacent_3p downward } 0 16 {A22R:C -> A23R:C: adjacent_5p upward } 0 17 {A23R:C -> A22R:C: adjacent_3p downward } 0 18 {A23R:C -> A24R:G: adjacent_5p upward } 0 19 {A24R:G -> A23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:A 0 1 A9R:G 0 2 A10R:G 0 3 A11R:G 0 4 A20R:C 0 5 A21R:C 0 6 A22R:C 0 7 A23R:C 0 [Edges] 0 {A8R:A -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:A: adjacent_3p downward } 0 2 {A8R:A -> A23R:C: pairing antiparallel cis 78 Bh/Ww } 0 3 {A23R:C -> A8R:A: pairing antiparallel cis 78 Ww/Bh } 0 4 {A9R:G -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> A22R:C: pairing antiparallel cis 128 Ww/Ww } 0 7 {A22R:C -> A9R:G: pairing antiparallel cis 128 Ww/Ww } 0 8 {A10R:G -> A11R:G: adjacent_5p upward } 0 9 {A11R:G -> A10R:G: adjacent_3p downward } 0 10 {A10R:G -> A21R:C: pairing antiparallel cis 128 Ww/Ww } 0 11 {A21R:C -> A10R:G: pairing antiparallel cis 128 Ww/Ww } 0 12 {A11R:G -> A20R:C: pairing antiparallel cis 128 Ww/Ww } 0 13 {A20R:C -> A11R:G: pairing antiparallel cis 128 Ww/Ww } 0 14 {A20R:C -> A21R:C: adjacent_5p } 0 15 {A21R:C -> A20R:C: adjacent_3p } 0 16 {A21R:C -> A22R:C: adjacent_5p upward } 0 17 {A22R:C -> A21R:C: adjacent_3p downward } 0 18 {A22R:C -> A23R:C: adjacent_5p upward } 0 19 {A23R:C -> A22R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:G 0 2 A11R:G 0 3 A12R:C 0 4 A19R:G 0 5 A20R:C 0 6 A21R:C 0 7 A22R:C 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A22R:C: pairing antiparallel cis 128 Ww/Ww } 0 3 {A22R:C -> A9R:G: pairing antiparallel cis 128 Ww/Ww } 0 4 {A10R:G -> A11R:G: adjacent_5p upward } 0 5 {A11R:G -> A10R:G: adjacent_3p downward } 0 6 {A10R:G -> A21R:C: pairing antiparallel cis 128 Ww/Ww } 0 7 {A21R:C -> A10R:G: pairing antiparallel cis 128 Ww/Ww } 0 8 {A11R:G -> A12R:C: adjacent_5p upward } 0 9 {A12R:C -> A11R:G: adjacent_3p downward } 0 10 {A11R:G -> A20R:C: pairing antiparallel cis 128 Ww/Ww } 0 11 {A20R:C -> A11R:G: pairing antiparallel cis 128 Ww/Ww } 0 12 {A12R:C -> A19R:G: pairing antiparallel cis 128 Ww/Ww } 0 13 {A19R:G -> A12R:C: pairing antiparallel cis 128 Ww/Ww } 0 14 {A19R:G -> A20R:C: adjacent_5p upward } 0 15 {A20R:C -> A19R:G: adjacent_3p downward } 0 16 {A20R:C -> A21R:C: adjacent_5p } 0 17 {A21R:C -> A20R:C: adjacent_3p } 0 18 {A21R:C -> A22R:C: adjacent_5p upward } 0 19 {A22R:C -> A21R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:U 0 3 A5R:G 0 4 A15R:C 0 5 A16R:A 0 6 A17R:G 0 7 A18R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A18R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:U -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:U: adjacent_3p downward } 0 10 {A4R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A16R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A15R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A5R:G -> A16R:A: outward } 0 15 {A16R:A -> A5R:G: outward } 0 16 {A15R:C -> A16R:A: adjacent_5p upward } 0 17 {A16R:A -> A15R:C: adjacent_3p downward } 0 18 {A16R:A -> A17R:G: adjacent_5p upward } 0 19 {A17R:G -> A16R:A: adjacent_3p downward } 0 20 {A17R:G -> A18R:C: adjacent_5p upward } 0 21 {A18R:C -> A17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:U 0 2 A5R:G 0 3 A6R:G 0 4 A14R:C 0 5 A15R:C 0 6 A16R:A 0 7 A17R:G 0 [Edges] 0 {A3R:C -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:U -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:U: adjacent_3p downward } 0 6 {A4R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A16R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:G -> A6R:G: adjacent_5p upward } 0 9 {A6R:G -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A15R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A16R:A: outward } 0 13 {A16R:A -> A5R:G: outward } 0 14 {A6R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A14R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A14R:C -> A15R:C: adjacent_5p upward } 0 17 {A15R:C -> A14R:C: adjacent_3p downward } 0 18 {A15R:C -> A16R:A: adjacent_5p upward } 0 19 {A16R:A -> A15R:C: adjacent_3p downward } 0 20 {A16R:A -> A17R:G: adjacent_5p upward } 0 21 {A17R:G -> A16R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:G 0 2 A6R:G 0 3 A7R:C 0 4 A13R:G 0 5 A14R:C 0 6 A15R:C 0 7 A16R:A 0 [Edges] 0 {A4R:U -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:U: adjacent_3p downward } 0 2 {A4R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A16R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:G -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A15R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A16R:A: outward } 0 9 {A16R:A -> A5R:G: outward } 0 10 {A6R:G -> A7R:C: adjacent_5p upward } 0 11 {A7R:C -> A6R:G: adjacent_3p downward } 0 12 {A6R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A14R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A13R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A13R:G -> A14R:C: adjacent_5p upward } 0 17 {A14R:C -> A13R:G: adjacent_3p downward } 0 18 {A14R:C -> A15R:C: adjacent_5p upward } 0 19 {A15R:C -> A14R:C: adjacent_3p downward } 0 20 {A15R:C -> A16R:A: adjacent_5p upward } 0 21 {A16R:A -> A15R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:G 0 2 A7R:C 0 3 A8R:U 0 4 A12R:C 0 5 A13R:G 0 6 A14R:C 0 7 A15R:C 0 [Edges] 0 {A5R:G -> A6R:G: adjacent_5p upward } 0 1 {A6R:G -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A15R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:G -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A14R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:C -> A8R:U: adjacent_5p } 0 9 {A8R:U -> A7R:C: adjacent_3p } 0 10 {A7R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A13R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:U -> A12R:C: pairing antiparallel cis XVIII Ww/Ww } 0 13 {A12R:C -> A8R:U: pairing antiparallel cis XVIII Ww/Ww } 0 14 {A8R:U -> A13R:G: outward } 0 15 {A13R:G -> A8R:U: outward } 0 16 {A12R:C -> A13R:G: adjacent_5p upward } 0 17 {A13R:G -> A12R:C: adjacent_3p downward } 0 18 {A13R:G -> A14R:C: adjacent_5p upward } 0 19 {A14R:C -> A13R:G: adjacent_3p downward } 0 20 {A14R:C -> A15R:C: adjacent_5p upward } 0 21 {A15R:C -> A14R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:U 0 3 A5R:G 0 4 A15R:C 0 5 A16R:A 0 6 A17R:G 0 7 A18R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A18R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:U -> A5R:G: adjacent_5p } 0 9 {A5R:G -> A4R:U: adjacent_3p } 0 10 {A4R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A16R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A15R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A5R:G -> A16R:A: outward } 0 15 {A16R:A -> A5R:G: outward } 0 16 {A15R:C -> A16R:A: adjacent_5p } 0 17 {A16R:A -> A15R:C: adjacent_3p } 0 18 {A16R:A -> A17R:G: adjacent_5p upward } 0 19 {A17R:G -> A16R:A: adjacent_3p downward } 0 20 {A17R:G -> A18R:C: adjacent_5p upward } 0 21 {A18R:C -> A17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:U 0 2 A5R:G 0 3 A6R:G 0 4 A14R:C 0 5 A15R:C 0 6 A16R:A 0 7 A17R:G 0 [Edges] 0 {A3R:C -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:U -> A5R:G: adjacent_5p } 0 5 {A5R:G -> A4R:U: adjacent_3p } 0 6 {A4R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A16R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:G -> A6R:G: adjacent_5p upward } 0 9 {A6R:G -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A15R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A16R:A: outward } 0 13 {A16R:A -> A5R:G: outward } 0 14 {A6R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A14R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A14R:C -> A15R:C: adjacent_5p } 0 17 {A15R:C -> A14R:C: adjacent_3p } 0 18 {A15R:C -> A16R:A: adjacent_5p } 0 19 {A16R:A -> A15R:C: adjacent_3p } 0 20 {A16R:A -> A17R:G: adjacent_5p upward } 0 21 {A17R:G -> A16R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:G 0 2 A6R:G 0 3 A7R:C 0 4 A13R:G 0 5 A14R:C 0 6 A15R:C 0 7 A16R:A 0 [Edges] 0 {A4R:U -> A5R:G: adjacent_5p } 0 1 {A5R:G -> A4R:U: adjacent_3p } 0 2 {A4R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A16R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:G -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A15R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A16R:A: outward } 0 9 {A16R:A -> A5R:G: outward } 0 10 {A6R:G -> A7R:C: adjacent_5p upward } 0 11 {A7R:C -> A6R:G: adjacent_3p downward } 0 12 {A6R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A14R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A13R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A13R:G -> A14R:C: adjacent_5p upward } 0 17 {A14R:C -> A13R:G: adjacent_3p downward } 0 18 {A14R:C -> A15R:C: adjacent_5p } 0 19 {A15R:C -> A14R:C: adjacent_3p } 0 20 {A15R:C -> A16R:A: adjacent_5p } 0 21 {A16R:A -> A15R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:G 0 3 A5R:C 0 4 A9R:G 0 5 A10R:C 0 6 A11R:A 0 7 A12R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A12R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A11R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A10R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:C -> A9R:G: pairing antiparallel cis Ww/Ww } 0 13 {A9R:G -> A5R:C: pairing antiparallel cis Ww/Ww } 0 14 {A9R:G -> A10R:C: adjacent_5p upward } 0 15 {A10R:C -> A9R:G: adjacent_3p downward } 0 16 {A10R:C -> A11R:A: adjacent_5p } 0 17 {A11R:A -> A10R:C: adjacent_3p } 0 18 {A11R:A -> A12R:C: adjacent_5p upward } 0 19 {A12R:C -> A11R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:G 0 3 A5R:C 0 4 A9R:G 0 5 A10R:C 0 6 A11R:A 0 7 A12R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A12R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A11R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A10R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A11R:A: outward } 0 13 {A11R:A -> A4R:G: outward } 0 14 {A5R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A9R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A9R:G -> A10R:C: adjacent_5p } 0 17 {A10R:C -> A9R:G: adjacent_3p } 0 18 {A10R:C -> A11R:A: adjacent_5p upward } 0 19 {A11R:A -> A10R:C: adjacent_3p downward } 0 20 {A11R:A -> A12R:C: adjacent_5p upward } 0 21 {A12R:C -> A11R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C1R:G 0 1 C2R:G 0 2 C3R:G 0 3 C4R:C 0 4 C34R:G 0 5 C35R:C 0 6 C36R:C 0 7 C37R:C 0 [Edges] 0 {C1R:G -> C2R:G: adjacent_5p upward } 0 1 {C2R:G -> C1R:G: adjacent_3p downward } 0 2 {C1R:G -> C37R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C37R:C -> C1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C2R:G -> C3R:G: adjacent_5p upward } 0 5 {C3R:G -> C2R:G: adjacent_3p downward } 0 6 {C2R:G -> C36R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C36R:C -> C2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C3R:G -> C4R:C: adjacent_5p upward } 0 9 {C4R:C -> C3R:G: adjacent_3p downward } 0 10 {C3R:G -> C35R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C35R:C -> C3R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C4R:C -> C34R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C34R:G -> C4R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C34R:G -> C35R:C: adjacent_5p upward } 0 15 {C35R:C -> C34R:G: adjacent_3p downward } 0 16 {C35R:C -> C36R:C: adjacent_5p } 0 17 {C36R:C -> C35R:C: adjacent_3p } 0 18 {C36R:C -> C37R:C: adjacent_5p } 0 19 {C37R:C -> C36R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C2R:G 0 1 C3R:G 0 2 C4R:C 0 3 C5R:C 0 4 C33R:G 0 5 C34R:G 0 6 C35R:C 0 7 C36R:C 0 [Edges] 0 {C2R:G -> C3R:G: adjacent_5p upward } 0 1 {C3R:G -> C2R:G: adjacent_3p downward } 0 2 {C2R:G -> C36R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C36R:C -> C2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C3R:G -> C4R:C: adjacent_5p upward } 0 5 {C4R:C -> C3R:G: adjacent_3p downward } 0 6 {C3R:G -> C35R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C35R:C -> C3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:C -> C5R:C: adjacent_5p } 0 9 {C5R:C -> C4R:C: adjacent_3p } 0 10 {C4R:C -> C34R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C34R:G -> C4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C5R:C -> C33R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C33R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C33R:G -> C34R:G: adjacent_5p upward } 0 15 {C34R:G -> C33R:G: adjacent_3p downward } 0 16 {C34R:G -> C35R:C: adjacent_5p upward } 0 17 {C35R:C -> C34R:G: adjacent_3p downward } 0 18 {C35R:C -> C36R:C: adjacent_5p } 0 19 {C36R:C -> C35R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C3R:G 0 1 C4R:C 0 2 C5R:C 0 3 C6R:C 0 4 C32R:G 0 5 C33R:G 0 6 C34R:G 0 7 C35R:C 0 [Edges] 0 {C3R:G -> C4R:C: adjacent_5p upward } 0 1 {C4R:C -> C3R:G: adjacent_3p downward } 0 2 {C3R:G -> C35R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C35R:C -> C3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C4R:C -> C5R:C: adjacent_5p } 0 5 {C5R:C -> C4R:C: adjacent_3p } 0 6 {C4R:C -> C34R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C34R:G -> C4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C5R:C -> C6R:C: adjacent_5p } 0 9 {C6R:C -> C5R:C: adjacent_3p } 0 10 {C5R:C -> C33R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C33R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C6R:C -> C32R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C32R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C32R:G -> C33R:G: adjacent_5p upward } 0 15 {C33R:G -> C32R:G: adjacent_3p downward } 0 16 {C33R:G -> C34R:G: adjacent_5p upward } 0 17 {C34R:G -> C33R:G: adjacent_3p downward } 0 18 {C34R:G -> C35R:C: adjacent_5p upward } 0 19 {C35R:C -> C34R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C4R:C 0 1 C5R:C 0 2 C6R:C 0 3 C7R:G 0 4 C31R:C 0 5 C32R:G 0 6 C33R:G 0 7 C34R:G 0 [Edges] 0 {C4R:C -> C5R:C: adjacent_5p } 0 1 {C5R:C -> C4R:C: adjacent_3p } 0 2 {C4R:C -> C34R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C34R:G -> C4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C5R:C -> C6R:C: adjacent_5p } 0 5 {C6R:C -> C5R:C: adjacent_3p } 0 6 {C5R:C -> C33R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C33R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C6R:C -> C7R:G: adjacent_5p upward } 0 9 {C7R:G -> C6R:C: adjacent_3p downward } 0 10 {C6R:C -> C32R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C32R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C7R:G -> C31R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C31R:C -> C7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C7R:G -> C32R:G: outward } 0 15 {C32R:G -> C7R:G: outward } 0 16 {C31R:C -> C32R:G: adjacent_5p upward } 0 17 {C32R:G -> C31R:C: adjacent_3p downward } 0 18 {C32R:G -> C33R:G: adjacent_5p upward } 0 19 {C33R:G -> C32R:G: adjacent_3p downward } 0 20 {C33R:G -> C34R:G: adjacent_5p upward } 0 21 {C34R:G -> C33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C5R:C 0 1 C6R:C 0 2 C7R:G 0 3 C8R:G 0 4 C30R:C 0 5 C31R:C 0 6 C32R:G 0 7 C33R:G 0 [Edges] 0 {C5R:C -> C6R:C: adjacent_5p } 0 1 {C6R:C -> C5R:C: adjacent_3p } 0 2 {C5R:C -> C33R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C33R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C6R:C -> C7R:G: adjacent_5p upward } 0 5 {C7R:G -> C6R:C: adjacent_3p downward } 0 6 {C6R:C -> C32R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C32R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C7R:G -> C8R:G: adjacent_5p upward } 0 9 {C8R:G -> C7R:G: adjacent_3p downward } 0 10 {C7R:G -> C31R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C31R:C -> C7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C7R:G -> C32R:G: outward } 0 13 {C32R:G -> C7R:G: outward } 0 14 {C8R:G -> C30R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C30R:C -> C8R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C30R:C -> C31R:C: adjacent_5p } 0 17 {C31R:C -> C30R:C: adjacent_3p } 0 18 {C31R:C -> C32R:G: adjacent_5p upward } 0 19 {C32R:G -> C31R:C: adjacent_3p downward } 0 20 {C32R:G -> C33R:G: adjacent_5p upward } 0 21 {C33R:G -> C32R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C6R:C 0 1 C7R:G 0 2 C8R:G 0 3 C9R:U 0 4 C29R:G 0 5 C30R:C 0 6 C31R:C 0 7 C32R:G 0 [Edges] 0 {C6R:C -> C7R:G: adjacent_5p upward } 0 1 {C7R:G -> C6R:C: adjacent_3p downward } 0 2 {C6R:C -> C32R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C32R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C7R:G -> C8R:G: adjacent_5p upward } 0 5 {C8R:G -> C7R:G: adjacent_3p downward } 0 6 {C7R:G -> C31R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C31R:C -> C7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C7R:G -> C32R:G: outward } 0 9 {C32R:G -> C7R:G: outward } 0 10 {C8R:G -> C9R:U: adjacent_5p upward } 0 11 {C9R:U -> C8R:G: adjacent_3p downward } 0 12 {C8R:G -> C30R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C30R:C -> C8R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C9R:U -> C29R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {C29R:G -> C9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {C29R:G -> C30R:C: adjacent_5p upward } 0 17 {C30R:C -> C29R:G: adjacent_3p downward } 0 18 {C30R:C -> C31R:C: adjacent_5p } 0 19 {C31R:C -> C30R:C: adjacent_3p } 0 20 {C31R:C -> C32R:G: adjacent_5p upward } 0 21 {C32R:G -> C31R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C13R:U 0 1 C14R:C 0 2 C15R:U 0 3 C16R:C 0 4 C21R:G 0 5 C22R:A 0 6 C23R:G 0 7 C24R:A 0 [Edges] 0 {C13R:U -> C14R:C: adjacent_5p upward } 0 1 {C14R:C -> C13R:U: adjacent_3p downward } 0 2 {C13R:U -> C24R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C24R:A -> C13R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C14R:C -> C15R:U: adjacent_5p upward } 0 5 {C15R:U -> C14R:C: adjacent_3p downward } 0 6 {C14R:C -> C23R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C23R:G -> C14R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C15R:U -> C16R:C: adjacent_5p upward } 0 9 {C16R:C -> C15R:U: adjacent_3p downward } 0 10 {C15R:U -> C22R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C22R:A -> C15R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C16R:C -> C21R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C21R:G -> C16R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C21R:G -> C22R:A: adjacent_5p upward } 0 15 {C22R:A -> C21R:G: adjacent_3p downward } 0 16 {C22R:A -> C23R:G: adjacent_5p upward } 0 17 {C23R:G -> C22R:A: adjacent_3p downward } 0 18 {C23R:G -> C24R:A: adjacent_5p upward } 0 19 {C24R:A -> C23R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D1R:G 0 1 D2R:G 0 2 D3R:G 0 3 D4R:C 0 4 D34R:G 0 5 D35R:C 0 6 D36R:C 0 7 D37R:C 0 [Edges] 0 {D1R:G -> D2R:G: adjacent_5p upward } 0 1 {D2R:G -> D1R:G: adjacent_3p downward } 0 2 {D1R:G -> D37R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D37R:C -> D1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D2R:G -> D3R:G: adjacent_5p upward } 0 5 {D3R:G -> D2R:G: adjacent_3p downward } 0 6 {D2R:G -> D36R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D36R:C -> D2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D3R:G -> D4R:C: adjacent_5p upward } 0 9 {D4R:C -> D3R:G: adjacent_3p downward } 0 10 {D3R:G -> D35R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D35R:C -> D3R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D4R:C -> D34R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D34R:G -> D4R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D34R:G -> D35R:C: adjacent_5p upward } 0 15 {D35R:C -> D34R:G: adjacent_3p downward } 0 16 {D35R:C -> D36R:C: adjacent_5p } 0 17 {D36R:C -> D35R:C: adjacent_3p } 0 18 {D36R:C -> D37R:C: adjacent_5p } 0 19 {D37R:C -> D36R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D2R:G 0 1 D3R:G 0 2 D4R:C 0 3 D5R:C 0 4 D33R:G 0 5 D34R:G 0 6 D35R:C 0 7 D36R:C 0 [Edges] 0 {D2R:G -> D3R:G: adjacent_5p upward } 0 1 {D3R:G -> D2R:G: adjacent_3p downward } 0 2 {D2R:G -> D36R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D36R:C -> D2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D3R:G -> D4R:C: adjacent_5p upward } 0 5 {D4R:C -> D3R:G: adjacent_3p downward } 0 6 {D3R:G -> D35R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D35R:C -> D3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D4R:C -> D5R:C: adjacent_5p } 0 9 {D5R:C -> D4R:C: adjacent_3p } 0 10 {D4R:C -> D34R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D34R:G -> D4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D5R:C -> D33R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D33R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D33R:G -> D34R:G: adjacent_5p upward } 0 15 {D34R:G -> D33R:G: adjacent_3p downward } 0 16 {D34R:G -> D35R:C: adjacent_5p upward } 0 17 {D35R:C -> D34R:G: adjacent_3p downward } 0 18 {D35R:C -> D36R:C: adjacent_5p } 0 19 {D36R:C -> D35R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D3R:G 0 1 D4R:C 0 2 D5R:C 0 3 D6R:C 0 4 D32R:G 0 5 D33R:G 0 6 D34R:G 0 7 D35R:C 0 [Edges] 0 {D3R:G -> D4R:C: adjacent_5p upward } 0 1 {D4R:C -> D3R:G: adjacent_3p downward } 0 2 {D3R:G -> D35R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D35R:C -> D3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D4R:C -> D5R:C: adjacent_5p } 0 5 {D5R:C -> D4R:C: adjacent_3p } 0 6 {D4R:C -> D34R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D34R:G -> D4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D5R:C -> D6R:C: adjacent_5p } 0 9 {D6R:C -> D5R:C: adjacent_3p } 0 10 {D5R:C -> D33R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D33R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D6R:C -> D32R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D32R:G -> D6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D32R:G -> D33R:G: adjacent_5p upward } 0 15 {D33R:G -> D32R:G: adjacent_3p downward } 0 16 {D33R:G -> D34R:G: adjacent_5p upward } 0 17 {D34R:G -> D33R:G: adjacent_3p downward } 0 18 {D34R:G -> D35R:C: adjacent_5p upward } 0 19 {D35R:C -> D34R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D4R:C 0 1 D5R:C 0 2 D6R:C 0 3 D7R:G 0 4 D31R:C 0 5 D32R:G 0 6 D33R:G 0 7 D34R:G 0 [Edges] 0 {D4R:C -> D5R:C: adjacent_5p } 0 1 {D5R:C -> D4R:C: adjacent_3p } 0 2 {D4R:C -> D34R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D34R:G -> D4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D5R:C -> D6R:C: adjacent_5p } 0 5 {D6R:C -> D5R:C: adjacent_3p } 0 6 {D5R:C -> D33R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D33R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D6R:C -> D7R:G: adjacent_5p } 0 9 {D7R:G -> D6R:C: adjacent_3p } 0 10 {D6R:C -> D32R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D32R:G -> D6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D7R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D31R:C -> D7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D7R:G -> D32R:G: outward } 0 15 {D32R:G -> D7R:G: outward } 0 16 {D31R:C -> D32R:G: adjacent_5p } 0 17 {D32R:G -> D31R:C: adjacent_3p } 0 18 {D32R:G -> D33R:G: adjacent_5p upward } 0 19 {D33R:G -> D32R:G: adjacent_3p downward } 0 20 {D33R:G -> D34R:G: adjacent_5p upward } 0 21 {D34R:G -> D33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D5R:C 0 1 D6R:C 0 2 D7R:G 0 3 D8R:G 0 4 D30R:C 0 5 D31R:C 0 6 D32R:G 0 7 D33R:G 0 [Edges] 0 {D5R:C -> D6R:C: adjacent_5p } 0 1 {D6R:C -> D5R:C: adjacent_3p } 0 2 {D5R:C -> D33R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D33R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D6R:C -> D7R:G: adjacent_5p } 0 5 {D7R:G -> D6R:C: adjacent_3p } 0 6 {D6R:C -> D32R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D32R:G -> D6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D7R:G -> D8R:G: adjacent_5p upward } 0 9 {D8R:G -> D7R:G: adjacent_3p downward } 0 10 {D7R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D31R:C -> D7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D7R:G -> D32R:G: outward } 0 13 {D32R:G -> D7R:G: outward } 0 14 {D8R:G -> D30R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D30R:C -> D8R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D30R:C -> D31R:C: adjacent_5p upward } 0 17 {D31R:C -> D30R:C: adjacent_3p downward } 0 18 {D31R:C -> D32R:G: adjacent_5p } 0 19 {D32R:G -> D31R:C: adjacent_3p } 0 20 {D32R:G -> D33R:G: adjacent_5p upward } 0 21 {D33R:G -> D32R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D6R:C 0 1 D7R:G 0 2 D8R:G 0 3 D9R:U 0 4 D29R:G 0 5 D30R:C 0 6 D31R:C 0 7 D32R:G 0 [Edges] 0 {D6R:C -> D7R:G: adjacent_5p } 0 1 {D7R:G -> D6R:C: adjacent_3p } 0 2 {D6R:C -> D32R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D32R:G -> D6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D7R:G -> D8R:G: adjacent_5p upward } 0 5 {D8R:G -> D7R:G: adjacent_3p downward } 0 6 {D7R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D31R:C -> D7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D7R:G -> D32R:G: outward } 0 9 {D32R:G -> D7R:G: outward } 0 10 {D8R:G -> D9R:U: adjacent_5p upward } 0 11 {D9R:U -> D8R:G: adjacent_3p downward } 0 12 {D8R:G -> D30R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D30R:C -> D8R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D9R:U -> D29R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {D29R:G -> D9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {D29R:G -> D30R:C: adjacent_5p upward } 0 17 {D30R:C -> D29R:G: adjacent_3p downward } 0 18 {D30R:C -> D31R:C: adjacent_5p upward } 0 19 {D31R:C -> D30R:C: adjacent_3p downward } 0 20 {D31R:C -> D32R:G: adjacent_5p } 0 21 {D32R:G -> D31R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D13R:U 0 1 D14R:C 0 2 D15R:U 0 3 D16R:C 0 4 D21R:G 0 5 D22R:A 0 6 D23R:G 0 7 D24R:A 0 [Edges] 0 {D13R:U -> D14R:C: adjacent_5p upward } 0 1 {D14R:C -> D13R:U: adjacent_3p downward } 0 2 {D13R:U -> D24R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D24R:A -> D13R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D14R:C -> D15R:U: adjacent_5p } 0 5 {D15R:U -> D14R:C: adjacent_3p } 0 6 {D14R:C -> D23R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D23R:G -> D14R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D15R:U -> D16R:C: adjacent_5p upward } 0 9 {D16R:C -> D15R:U: adjacent_3p downward } 0 10 {D15R:U -> D22R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D22R:A -> D15R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D16R:C -> D21R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D21R:G -> D16R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D21R:G -> D22R:A: adjacent_5p upward } 0 15 {D22R:A -> D21R:G: adjacent_3p downward } 0 16 {D22R:A -> D23R:G: adjacent_5p upward } 0 17 {D23R:G -> D22R:A: adjacent_3p downward } 0 18 {D23R:G -> D24R:A: adjacent_5p upward } 0 19 {D24R:A -> D23R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:C 0 3 A5R:U 0 4 A30R:A 0 5 A31R:G 0 6 A32R:G 0 7 A33R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A33R:C: pairing antiparallel cis one_hbond Ws/Ww } 0 3 {A33R:C -> A2R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 4 {A3R:U -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A32R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A32R:G -> A3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A4R:C -> A5R:U: adjacent_5p } 0 9 {A5R:U -> A4R:C: adjacent_3p } 0 10 {A4R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A31R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:U -> A30R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A30R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A30R:A -> A31R:G: adjacent_5p upward } 0 15 {A31R:G -> A30R:A: adjacent_3p downward } 0 16 {A31R:G -> A32R:G: adjacent_5p upward } 0 17 {A32R:G -> A31R:G: adjacent_3p downward } 0 18 {A32R:G -> A33R:C: adjacent_5p upward } 0 19 {A33R:C -> A32R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:C 0 2 A5R:U 0 3 A6R:G 0 4 A29R:C 0 5 A30R:A 0 6 A31R:G 0 7 A32R:G 0 [Edges] 0 {A3R:U -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> A32R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A32R:G -> A3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A4R:C -> A5R:U: adjacent_5p } 0 5 {A5R:U -> A4R:C: adjacent_3p } 0 6 {A4R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A31R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> A6R:G: adjacent_5p upward } 0 9 {A6R:G -> A5R:U: adjacent_3p downward } 0 10 {A5R:U -> A30R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A30R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A29R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:G -> A30R:A: outward } 0 15 {A30R:A -> A6R:G: outward } 0 16 {A29R:C -> A30R:A: adjacent_5p } 0 17 {A30R:A -> A29R:C: adjacent_3p } 0 18 {A30R:A -> A31R:G: adjacent_5p upward } 0 19 {A31R:G -> A30R:A: adjacent_3p downward } 0 20 {A31R:G -> A32R:G: adjacent_5p upward } 0 21 {A32R:G -> A31R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:U 0 2 A6R:G 0 3 A7R:G 0 4 A28R:A 0 5 A29R:C 0 6 A30R:A 0 7 A31R:G 0 [Edges] 0 {A4R:C -> A5R:U: adjacent_5p } 0 1 {A5R:U -> A4R:C: adjacent_3p } 0 2 {A4R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A31R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> A30R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A30R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:G -> A7R:G: adjacent_5p } 0 9 {A7R:G -> A6R:G: adjacent_3p } 0 10 {A6R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A29R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:G -> A30R:A: outward } 0 13 {A30R:A -> A6R:G: outward } 0 14 {A7R:G -> A28R:A: pairing antiparallel cis VIII Ww/Ww } 0 15 {A28R:A -> A7R:G: pairing antiparallel cis VIII Ww/Ww } 0 16 {A28R:A -> A29R:C: adjacent_5p upward } 0 17 {A29R:C -> A28R:A: adjacent_3p downward } 0 18 {A29R:C -> A30R:A: adjacent_5p } 0 19 {A30R:A -> A29R:C: adjacent_3p } 0 20 {A30R:A -> A31R:G: adjacent_5p upward } 0 21 {A31R:G -> A30R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:A 0 2 A13R:G 0 3 A14R:C 0 4 A19R:G 0 5 A20R:C 0 6 A21R:U 0 7 A22R:G 0 [Edges] 0 {A11R:C -> A12R:A: adjacent_5p upward } 0 1 {A12R:A -> A11R:C: adjacent_3p downward } 0 2 {A11R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:A -> A13R:G: adjacent_5p upward } 0 5 {A13R:G -> A12R:A: adjacent_3p downward } 0 6 {A12R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A21R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A12R:A -> A22R:G: outward } 0 9 {A22R:G -> A12R:A: outward } 0 10 {A13R:G -> A14R:C: adjacent_5p } 0 11 {A14R:C -> A13R:G: adjacent_3p } 0 12 {A13R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A20R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A19R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A19R:G -> A20R:C: adjacent_5p } 0 17 {A20R:C -> A19R:G: adjacent_3p } 0 18 {A20R:C -> A21R:U: adjacent_5p upward } 0 19 {A21R:U -> A20R:C: adjacent_3p downward } 0 20 {A21R:U -> A22R:G: adjacent_5p } 0 21 {A22R:G -> A21R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A12R:A 0 1 A13R:G 0 2 A14R:C 0 3 A15R:G 0 4 A18R:A 0 5 A19R:G 0 6 A20R:C 0 7 A21R:U 0 [Edges] 0 {A12R:A -> A13R:G: adjacent_5p upward } 0 1 {A13R:G -> A12R:A: adjacent_3p downward } 0 2 {A12R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A21R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A13R:G -> A14R:C: adjacent_5p } 0 5 {A14R:C -> A13R:G: adjacent_3p } 0 6 {A13R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:C -> A15R:G: adjacent_5p } 0 9 {A15R:G -> A14R:C: adjacent_3p } 0 10 {A14R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A19R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A15R:G -> A18R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 13 {A18R:A -> A15R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 14 {A18R:A -> A19R:G: adjacent_5p } 0 15 {A19R:G -> A18R:A: adjacent_3p } 0 16 {A19R:G -> A20R:C: adjacent_5p } 0 17 {A20R:C -> A19R:G: adjacent_3p } 0 18 {A20R:C -> A21R:U: adjacent_5p upward } 0 19 {A21R:U -> A20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:C 0 1 A3R:G 0 2 A4R:G 0 3 A5R:A 0 4 A68R:U 0 5 A69R:U 0 6 A70R:C 0 7 A71R:G 0 [Edges] 0 {A2R:C -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:C: adjacent_3p downward } 0 2 {A2R:C -> A71R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A71R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A70R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A70R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:G -> A71R:G: outward } 0 9 {A71R:G -> A3R:G: outward } 0 10 {A4R:G -> A5R:A: adjacent_5p upward } 0 11 {A5R:A -> A4R:G: adjacent_3p downward } 0 12 {A4R:G -> A69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A69R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A5R:A -> A68R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A68R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A68R:U -> A69R:U: adjacent_5p upward } 0 17 {A69R:U -> A68R:U: adjacent_3p downward } 0 18 {A69R:U -> A70R:C: adjacent_5p } 0 19 {A70R:C -> A69R:U: adjacent_3p } 0 20 {A70R:C -> A71R:G: adjacent_5p upward } 0 21 {A71R:G -> A70R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:G 0 2 A5R:A 0 3 A6R:U 0 4 A67R:A 0 5 A68R:U 0 6 A69R:U 0 7 A70R:C 0 [Edges] 0 {A3R:G -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A70R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A70R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A69R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A5R:A -> A6R:U: adjacent_5p upward } 0 9 {A6R:U -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> A68R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A68R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:U -> A67R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A67R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A67R:A -> A68R:U: adjacent_5p upward } 0 15 {A68R:U -> A67R:A: adjacent_3p downward } 0 16 {A68R:U -> A69R:U: adjacent_5p upward } 0 17 {A69R:U -> A68R:U: adjacent_3p downward } 0 18 {A69R:U -> A70R:C: adjacent_5p } 0 19 {A70R:C -> A69R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:U 0 3 A7R:U 0 4 A66R:A 0 5 A67R:A 0 6 A68R:U 0 7 A69R:U 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A69R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A5R:A -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> A68R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A68R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:U -> A7R:U: adjacent_5p upward } 0 9 {A7R:U -> A6R:U: adjacent_3p downward } 0 10 {A6R:U -> A67R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A67R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:U -> A66R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A66R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A66R:A -> A67R:A: adjacent_5p upward } 0 15 {A67R:A -> A66R:A: adjacent_3p downward } 0 16 {A67R:A -> A68R:U: adjacent_5p upward } 0 17 {A68R:U -> A67R:A: adjacent_3p downward } 0 18 {A68R:U -> A69R:U: adjacent_5p upward } 0 19 {A69R:U -> A68R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:C 0 2 A12R:U 0 3 A13R:C 0 4 A22R:G 0 5 A23R:A 0 6 A24R:G 0 7 A25R:C 0 [Edges] 0 {A10R:G -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:C -> A12R:U: adjacent_5p upward } 0 5 {A12R:U -> A11R:C: adjacent_3p downward } 0 6 {A11R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A24R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:U -> A13R:C: adjacent_5p upward } 0 9 {A13R:C -> A12R:U: adjacent_3p downward } 0 10 {A12R:U -> A23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A23R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A13R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A22R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A22R:G -> A23R:A: adjacent_5p upward } 0 15 {A23R:A -> A22R:G: adjacent_3p downward } 0 16 {A23R:A -> A24R:G: adjacent_5p upward } 0 17 {A24R:G -> A23R:A: adjacent_3p downward } 0 18 {A24R:G -> A25R:C: adjacent_5p upward } 0 19 {A25R:C -> A24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A26R:G 0 1 A27R:C 0 2 A28R:C 0 3 A29R:A 0 4 A41R:U 0 5 A42R:G 0 6 A43R:G 0 7 A44R:A 0 [Edges] 0 {A26R:G -> A27R:C: adjacent_5p upward } 0 1 {A27R:C -> A26R:G: adjacent_3p downward } 0 2 {A26R:G -> A44R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A44R:A -> A26R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A27R:C -> A28R:C: adjacent_5p } 0 5 {A28R:C -> A27R:C: adjacent_3p } 0 6 {A27R:C -> A43R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A43R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A28R:C -> A29R:A: adjacent_5p upward } 0 9 {A29R:A -> A28R:C: adjacent_3p downward } 0 10 {A28R:C -> A42R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A42R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A29R:A -> A41R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A41R:U -> A29R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A29R:A -> A42R:G: outward } 0 15 {A42R:G -> A29R:A: outward } 0 16 {A41R:U -> A42R:G: adjacent_5p } 0 17 {A42R:G -> A41R:U: adjacent_3p } 0 18 {A42R:G -> A43R:G: adjacent_5p upward } 0 19 {A43R:G -> A42R:G: adjacent_3p downward } 0 20 {A43R:G -> A44R:A: adjacent_5p upward } 0 21 {A44R:A -> A43R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A27R:C 0 1 A28R:C 0 2 A29R:A 0 3 A30R:G 0 4 A40R:C 0 5 A41R:U 0 6 A42R:G 0 7 A43R:G 0 [Edges] 0 {A27R:C -> A28R:C: adjacent_5p } 0 1 {A28R:C -> A27R:C: adjacent_3p } 0 2 {A27R:C -> A43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A43R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A28R:C -> A29R:A: adjacent_5p upward } 0 5 {A29R:A -> A28R:C: adjacent_3p downward } 0 6 {A28R:C -> A42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A42R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A29R:A -> A30R:G: adjacent_5p upward } 0 9 {A30R:G -> A29R:A: adjacent_3p downward } 0 10 {A29R:A -> A41R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A41R:U -> A29R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A29R:A -> A42R:G: outward } 0 13 {A42R:G -> A29R:A: outward } 0 14 {A30R:G -> A40R:C: pairing antiparallel cis Ww/Ww } 0 15 {A40R:C -> A30R:G: pairing antiparallel cis Ww/Ww } 0 16 {A40R:C -> A41R:U: adjacent_5p } 0 17 {A41R:U -> A40R:C: adjacent_3p } 0 18 {A41R:U -> A42R:G: adjacent_5p } 0 19 {A42R:G -> A41R:U: adjacent_3p } 0 20 {A42R:G -> A43R:G: adjacent_5p upward } 0 21 {A43R:G -> A42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A49R:C 0 1 A50R:U 0 2 A51R:G 0 3 A52R:U 0 4 A62R:A 0 5 A63R:C 0 6 A64R:A 0 7 A65R:G 0 [Edges] 0 {A49R:C -> A50R:U: adjacent_5p } 0 1 {A50R:U -> A49R:C: adjacent_3p } 0 2 {A49R:C -> A65R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A65R:G -> A49R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A50R:U -> A51R:G: adjacent_5p } 0 5 {A51R:G -> A50R:U: adjacent_3p } 0 6 {A50R:U -> A64R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A64R:A -> A50R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A51R:G -> A52R:U: adjacent_5p upward } 0 9 {A52R:U -> A51R:G: adjacent_3p downward } 0 10 {A51R:G -> A63R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A63R:C -> A51R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A51R:G -> A64R:A: outward } 0 13 {A64R:A -> A51R:G: outward } 0 14 {A52R:U -> A62R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A62R:A -> A52R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A62R:A -> A63R:C: adjacent_5p upward } 0 17 {A63R:C -> A62R:A: adjacent_3p downward } 0 18 {A63R:C -> A64R:A: adjacent_5p upward } 0 19 {A64R:A -> A63R:C: adjacent_3p downward } 0 20 {A64R:A -> A65R:G: adjacent_5p upward } 0 21 {A65R:G -> A64R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A50R:U 0 1 A51R:G 0 2 A52R:U 0 3 A53R:G 0 4 A61R:C 0 5 A62R:A 0 6 A63R:C 0 7 A64R:A 0 [Edges] 0 {A50R:U -> A51R:G: adjacent_5p } 0 1 {A51R:G -> A50R:U: adjacent_3p } 0 2 {A50R:U -> A64R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A64R:A -> A50R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A51R:G -> A52R:U: adjacent_5p upward } 0 5 {A52R:U -> A51R:G: adjacent_3p downward } 0 6 {A51R:G -> A63R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A63R:C -> A51R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A51R:G -> A64R:A: outward } 0 9 {A64R:A -> A51R:G: outward } 0 10 {A52R:U -> A53R:G: adjacent_5p upward } 0 11 {A53R:G -> A52R:U: adjacent_3p downward } 0 12 {A52R:U -> A62R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A62R:A -> A52R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A53R:G -> A61R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A61R:C -> A53R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A53R:G -> A62R:A: outward } 0 17 {A62R:A -> A53R:G: outward } 0 18 {A61R:C -> A62R:A: adjacent_5p } 0 19 {A62R:A -> A61R:C: adjacent_3p } 0 20 {A62R:A -> A63R:C: adjacent_5p upward } 0 21 {A63R:C -> A62R:A: adjacent_3p downward } 0 22 {A63R:C -> A64R:A: adjacent_5p upward } 0 23 {A64R:A -> A63R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:C 0 2 A8R:G 0 3 A9R:U 0 4 B6R:A 0 5 B7R:C 0 6 B8R:G 0 7 B9R:U 0 [Edges] 0 {A6R:A -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B9R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:C -> A8R:G: adjacent_5p upward } 0 5 {A8R:G -> A7R:C: adjacent_3p downward } 0 6 {A7R:C -> B8R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B8R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:G -> A9R:U: adjacent_5p upward } 0 9 {A9R:U -> A8R:G: adjacent_3p downward } 0 10 {A8R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B7R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:G -> B8R:G: outward } 0 13 {B8R:G -> A8R:G: outward } 0 14 {A9R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B6R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B6R:A -> B7R:C: adjacent_5p upward } 0 17 {B7R:C -> B6R:A: adjacent_3p downward } 0 18 {B7R:C -> B8R:G: adjacent_5p } 0 19 {B8R:G -> B7R:C: adjacent_3p } 0 20 {B8R:G -> B9R:U: adjacent_5p upward } 0 21 {B9R:U -> B8R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:C 0 1 A3R:U 0 2 A4R:U 0 3 A5R:C 0 4 B4R:U 0 5 B5R:C 0 6 B6R:G 0 7 B7R:G 0 [Edges] 0 {A2R:C -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:C: adjacent_3p downward } 0 2 {A2R:C -> B7R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B7R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:U: adjacent_5p } 0 5 {A4R:U -> A3R:U: adjacent_3p } 0 6 {A3R:U -> B6R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B6R:G -> A3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A4R:U -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:U: adjacent_3p downward } 0 10 {A4R:U -> B5R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {B5R:C -> A4R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {A5R:C -> B4R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {B4R:U -> A5R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {B4R:U -> B5R:C: adjacent_5p upward } 0 15 {B5R:C -> B4R:U: adjacent_3p downward } 0 16 {B5R:C -> B6R:G: adjacent_5p upward } 0 17 {B6R:G -> B5R:C: adjacent_3p downward } 0 18 {B6R:G -> B7R:G: adjacent_5p upward } 0 19 {B7R:G -> B6R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:U 0 2 A5R:C 0 3 A6R:G 0 4 B3R:U 0 5 B4R:U 0 6 B5R:C 0 7 B6R:G 0 [Edges] 0 {A3R:U -> A4R:U: adjacent_5p } 0 1 {A4R:U -> A3R:U: adjacent_3p } 0 2 {A3R:U -> B6R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B6R:G -> A3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A4R:U -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:U: adjacent_3p downward } 0 6 {A4R:U -> B5R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {B5R:C -> A4R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A5R:C -> A6R:G: adjacent_5p upward } 0 9 {A6R:G -> A5R:C: adjacent_3p downward } 0 10 {A5R:C -> B4R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {B4R:U -> A5R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {A6R:G -> B3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B3R:U -> A6R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {B3R:U -> B4R:U: adjacent_5p } 0 15 {B4R:U -> B3R:U: adjacent_3p } 0 16 {B4R:U -> B5R:C: adjacent_5p upward } 0 17 {B5R:C -> B4R:U: adjacent_3p downward } 0 18 {B5R:C -> B6R:G: adjacent_5p upward } 0 19 {B6R:G -> B5R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:C 0 2 A6R:G 0 3 A7R:G 0 4 B2R:C 0 5 B3R:U 0 6 B4R:U 0 7 B5R:C 0 [Edges] 0 {A4R:U -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:U: adjacent_3p downward } 0 2 {A4R:U -> B5R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B5R:C -> A4R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A5R:C -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> B4R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {B4R:U -> A5R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A6R:G -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:G: adjacent_3p downward } 0 10 {A6R:G -> B3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B3R:U -> A6R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A7R:G -> B2R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B2R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B2R:C -> B3R:U: adjacent_5p upward } 0 15 {B3R:U -> B2R:C: adjacent_3p downward } 0 16 {B3R:U -> B4R:U: adjacent_5p } 0 17 {B4R:U -> B3R:U: adjacent_3p } 0 18 {B4R:U -> B5R:C: adjacent_5p upward } 0 19 {B5R:C -> B4R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:C 0 3 A5R:G 0 4 A18R:A 0 5 A19R:G 0 6 A20R:G 0 7 A21R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:C: adjacent_5p } 0 5 {A4R:C -> A3R:C: adjacent_3p } 0 6 {A3R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A19R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A18R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A18R:A -> A5R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A18R:A -> A19R:G: adjacent_5p upward } 0 15 {A19R:G -> A18R:A: adjacent_3p downward } 0 16 {A19R:G -> A20R:G: adjacent_5p upward } 0 17 {A20R:G -> A19R:G: adjacent_3p downward } 0 18 {A20R:G -> A21R:C: adjacent_5p upward } 0 19 {A21R:C -> A20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:C 0 2 A5R:G 0 3 A6R:A 0 4 A17R:U 0 5 A18R:A 0 6 A19R:G 0 7 A20R:G 0 [Edges] 0 {A3R:C -> A4R:C: adjacent_5p } 0 1 {A4R:C -> A3R:C: adjacent_3p } 0 2 {A3R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A6R:A: adjacent_5p } 0 9 {A6R:A -> A5R:G: adjacent_3p } 0 10 {A5R:G -> A18R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {A18R:A -> A5R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {A6R:A -> A17R:U: pairing antiparallel trans XXIV Hh/Ws } 0 13 {A17R:U -> A6R:A: pairing antiparallel trans XXIV Ws/Hh } 0 14 {A6R:A -> A18R:A: outward } 0 15 {A18R:A -> A6R:A: outward } 0 16 {A17R:U -> A18R:A: adjacent_5p } 0 17 {A18R:A -> A17R:U: adjacent_3p } 0 18 {A18R:A -> A19R:G: adjacent_5p upward } 0 19 {A19R:G -> A18R:A: adjacent_3p downward } 0 20 {A19R:G -> A20R:G: adjacent_5p upward } 0 21 {A20R:G -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:A 0 2 A8R:A 0 3 A9R:U 0 4 A14R:A 0 5 A15R:A 0 6 A16R:G 0 7 A17R:U 0 [Edges] 0 {A6R:A -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> A17R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {A17R:U -> A6R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {A7R:A -> A8R:A: adjacent_5p upward } 0 5 {A8R:A -> A7R:A: adjacent_3p downward } 0 6 {A7R:A -> A15R:A: pairing parallel trans II Hh/Hh } 0 7 {A15R:A -> A7R:A: pairing parallel trans II Hh/Hh } 0 8 {A8R:A -> A9R:U: adjacent_5p } 0 9 {A9R:U -> A8R:A: adjacent_3p } 0 10 {A9R:U -> A14R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {A14R:A -> A9R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {A14R:A -> A15R:A: adjacent_5p } 0 13 {A15R:A -> A14R:A: adjacent_3p } 0 14 {A15R:A -> A16R:G: adjacent_5p } 0 15 {A16R:G -> A15R:A: adjacent_3p } 0 16 {A15R:A -> A17R:U: outward } 0 17 {A17R:U -> A15R:A: outward } 0 18 {A16R:G -> A17R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 19 {A17R:U -> A16R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 . . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . 7 . . 13 . 14 16 6 . . . . . 15 . 18 7 3 . . . . 17 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:A 0 3 A5R:C 0 4 A9R:G 0 5 A10R:U 0 6 A11R:A 0 7 A12R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A12R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A11R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A10R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A4R:A -> A11R:A: outward } 0 13 {A11R:A -> A4R:A: outward } 0 14 {A5R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A9R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A9R:G -> A10R:U: adjacent_5p upward } 0 17 {A10R:U -> A9R:G: adjacent_3p downward } 0 18 {A10R:U -> A11R:A: adjacent_5p upward } 0 19 {A11R:A -> A10R:U: adjacent_3p downward } 0 20 {A11R:A -> A12R:C: adjacent_5p upward } 0 21 {A12R:C -> A11R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:G 0 2 4R:G 0 3 5R:C 0 4 14R:G 0 5 15R:C 0 6 16R:U 0 7 17R:C 0 [Edges] 0 {2R:G -> 3R:G: adjacent_5p upward } 0 1 {3R:G -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {17R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:G -> 4R:G: adjacent_5p upward } 0 5 {4R:G -> 3R:G: adjacent_3p downward } 0 6 {3R:G -> 16R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {16R:U -> 3R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {4R:G -> 5R:C: adjacent_5p upward } 0 9 {5R:C -> 4R:G: adjacent_3p downward } 0 10 {4R:G -> 15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {15R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {5R:C -> 14R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {14R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {14R:G -> 15R:C: adjacent_5p upward } 0 15 {15R:C -> 14R:G: adjacent_3p downward } 0 16 {15R:C -> 16R:U: adjacent_5p } 0 17 {16R:U -> 15R:C: adjacent_3p } 0 18 {16R:U -> 17R:C: adjacent_5p upward } 0 19 {17R:C -> 16R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 3R:G 0 1 4R:G 0 2 5R:C 0 3 6R:U 0 4 13R:A 0 5 14R:G 0 6 15R:C 0 7 16R:U 0 [Edges] 0 {3R:G -> 4R:G: adjacent_5p upward } 0 1 {4R:G -> 3R:G: adjacent_3p downward } 0 2 {3R:G -> 16R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {16R:U -> 3R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {4R:G -> 5R:C: adjacent_5p upward } 0 5 {5R:C -> 4R:G: adjacent_3p downward } 0 6 {4R:G -> 15R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {15R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {5R:C -> 6R:U: adjacent_5p upward } 0 9 {6R:U -> 5R:C: adjacent_3p downward } 0 10 {5R:C -> 14R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {14R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {6R:U -> 13R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {13R:A -> 6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {13R:A -> 14R:G: adjacent_5p upward } 0 15 {14R:G -> 13R:A: adjacent_3p downward } 0 16 {14R:G -> 15R:C: adjacent_5p upward } 0 17 {15R:C -> 14R:G: adjacent_3p downward } 0 18 {15R:C -> 16R:U: adjacent_5p } 0 19 {16R:U -> 15R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 4R:G 0 1 5R:C 0 2 6R:U 0 3 7R:C 0 4 12R:G 0 5 13R:A 0 6 14R:G 0 7 15R:C 0 [Edges] 0 {4R:G -> 5R:C: adjacent_5p upward } 0 1 {5R:C -> 4R:G: adjacent_3p downward } 0 2 {4R:G -> 15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {15R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {5R:C -> 6R:U: adjacent_5p upward } 0 5 {6R:U -> 5R:C: adjacent_3p downward } 0 6 {5R:C -> 14R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {14R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {6R:U -> 7R:C: adjacent_5p upward } 0 9 {7R:C -> 6R:U: adjacent_3p downward } 0 10 {6R:U -> 13R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {13R:A -> 6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {7R:C -> 12R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {12R:G -> 7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {12R:G -> 13R:A: adjacent_5p upward } 0 15 {13R:A -> 12R:G: adjacent_3p downward } 0 16 {13R:A -> 14R:G: adjacent_5p upward } 0 17 {14R:G -> 13R:A: adjacent_3p downward } 0 18 {14R:G -> 15R:C: adjacent_5p upward } 0 19 {15R:C -> 14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 C901R:U 0 1 C902R:C 0 2 C903R:C 0 3 C904R:G 0 4 C969R:C 0 5 C970R:G 0 6 C971R:G 0 7 C972R:A 0 [Edges] 0 {C901R:U -> C902R:C: adjacent_5p } 0 1 {C902R:C -> C901R:U: adjacent_3p } 0 2 {C901R:U -> C972R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C972R:A -> C901R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C902R:C -> C903R:C: adjacent_5p } 0 5 {C903R:C -> C902R:C: adjacent_3p } 0 6 {C902R:C -> C971R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C971R:G -> C902R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C903R:C -> C904R:G: adjacent_5p upward } 0 9 {C904R:G -> C903R:C: adjacent_3p downward } 0 10 {C903R:C -> C970R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C970R:G -> C903R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C904R:G -> C969R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C969R:C -> C904R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C904R:G -> C970R:G: outward } 0 15 {C970R:G -> C904R:G: outward } 0 16 {C969R:C -> C970R:G: adjacent_5p upward } 0 17 {C970R:G -> C969R:C: adjacent_3p downward } 0 18 {C970R:G -> C971R:G: adjacent_5p upward } 0 19 {C971R:G -> C970R:G: adjacent_3p downward } 0 20 {C971R:G -> C972R:A: adjacent_5p upward } 0 21 {C972R:A -> C971R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C902R:C 0 1 C903R:C 0 2 C904R:G 0 3 C905R:U 0 4 C968R:G 0 5 C969R:C 0 6 C970R:G 0 7 C971R:G 0 [Edges] 0 {C902R:C -> C903R:C: adjacent_5p } 0 1 {C903R:C -> C902R:C: adjacent_3p } 0 2 {C902R:C -> C971R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C971R:G -> C902R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C903R:C -> C904R:G: adjacent_5p upward } 0 5 {C904R:G -> C903R:C: adjacent_3p downward } 0 6 {C903R:C -> C970R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C970R:G -> C903R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C904R:G -> C905R:U: adjacent_5p upward } 0 9 {C905R:U -> C904R:G: adjacent_3p downward } 0 10 {C904R:G -> C969R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C969R:C -> C904R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C904R:G -> C970R:G: outward } 0 13 {C970R:G -> C904R:G: outward } 0 14 {C905R:U -> C968R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {C968R:G -> C905R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {C968R:G -> C969R:C: adjacent_5p upward } 0 17 {C969R:C -> C968R:G: adjacent_3p downward } 0 18 {C969R:C -> C970R:G: adjacent_5p upward } 0 19 {C970R:G -> C969R:C: adjacent_3p downward } 0 20 {C970R:G -> C971R:G: adjacent_5p upward } 0 21 {C971R:G -> C970R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C903R:C 0 1 C904R:G 0 2 C905R:U 0 3 C906R:G 0 4 C967R:C 0 5 C968R:G 0 6 C969R:C 0 7 C970R:G 0 [Edges] 0 {C903R:C -> C904R:G: adjacent_5p upward } 0 1 {C904R:G -> C903R:C: adjacent_3p downward } 0 2 {C903R:C -> C970R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C970R:G -> C903R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C904R:G -> C905R:U: adjacent_5p upward } 0 5 {C905R:U -> C904R:G: adjacent_3p downward } 0 6 {C904R:G -> C969R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C969R:C -> C904R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C904R:G -> C970R:G: outward } 0 9 {C970R:G -> C904R:G: outward } 0 10 {C905R:U -> C906R:G: adjacent_5p } 0 11 {C906R:G -> C905R:U: adjacent_3p } 0 12 {C905R:U -> C968R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {C968R:G -> C905R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {C906R:G -> C967R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C967R:C -> C906R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C906R:G -> C968R:G: outward } 0 17 {C968R:G -> C906R:G: outward } 0 18 {C967R:C -> C968R:G: adjacent_5p } 0 19 {C968R:G -> C967R:C: adjacent_3p } 0 20 {C968R:G -> C969R:C: adjacent_5p upward } 0 21 {C969R:C -> C968R:G: adjacent_3p downward } 0 22 {C969R:C -> C970R:G: adjacent_5p upward } 0 23 {C970R:G -> C969R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 C904R:G 0 1 C905R:U 0 2 C906R:G 0 3 C907R:A 0 4 C966R:U 0 5 C967R:C 0 6 C968R:G 0 7 C969R:C 0 [Edges] 0 {C904R:G -> C905R:U: adjacent_5p upward } 0 1 {C905R:U -> C904R:G: adjacent_3p downward } 0 2 {C904R:G -> C969R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C969R:C -> C904R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C905R:U -> C906R:G: adjacent_5p } 0 5 {C906R:G -> C905R:U: adjacent_3p } 0 6 {C905R:U -> C968R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {C968R:G -> C905R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {C906R:G -> C907R:A: adjacent_5p upward } 0 9 {C907R:A -> C906R:G: adjacent_3p downward } 0 10 {C906R:G -> C967R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C967R:C -> C906R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C906R:G -> C968R:G: outward } 0 13 {C968R:G -> C906R:G: outward } 0 14 {C907R:A -> C966R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {C966R:U -> C907R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {C966R:U -> C967R:C: adjacent_5p upward } 0 17 {C967R:C -> C966R:U: adjacent_3p downward } 0 18 {C967R:C -> C968R:G: adjacent_5p } 0 19 {C968R:G -> C967R:C: adjacent_3p } 0 20 {C968R:G -> C969R:C: adjacent_5p upward } 0 21 {C969R:C -> C968R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C925R:U 0 1 C926R:G 0 2 C927R:G 0 3 C928R:G 0 4 C942R:C 0 5 C943R:C 0 6 C944R:A 0 7 C945R:G 0 [Edges] 0 {C925R:U -> C926R:G: adjacent_5p upward } 0 1 {C926R:G -> C925R:U: adjacent_3p downward } 0 2 {C925R:U -> C945R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 3 {C945R:G -> C925R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 4 {C926R:G -> C927R:G: adjacent_5p upward } 0 5 {C927R:G -> C926R:G: adjacent_3p downward } 0 6 {C926R:G -> C944R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {C944R:A -> C926R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {C927R:G -> C928R:G: adjacent_5p upward } 0 9 {C928R:G -> C927R:G: adjacent_3p downward } 0 10 {C927R:G -> C943R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C943R:C -> C927R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C927R:G -> C944R:A: outward } 0 13 {C944R:A -> C927R:G: outward } 0 14 {C928R:G -> C942R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C942R:C -> C928R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C942R:C -> C943R:C: adjacent_5p upward } 0 17 {C943R:C -> C942R:C: adjacent_3p downward } 0 18 {C943R:C -> C944R:A: adjacent_5p } 0 19 {C944R:A -> C943R:C: adjacent_3p } 0 20 {C944R:A -> C945R:G: adjacent_5p upward } 0 21 {C945R:G -> C944R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C926R:G 0 1 C927R:G 0 2 C928R:G 0 3 C929R:C 0 4 C941R:G 0 5 C942R:C 0 6 C943R:C 0 7 C944R:A 0 [Edges] 0 {C926R:G -> C927R:G: adjacent_5p upward } 0 1 {C927R:G -> C926R:G: adjacent_3p downward } 0 2 {C926R:G -> C944R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {C944R:A -> C926R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {C927R:G -> C928R:G: adjacent_5p upward } 0 5 {C928R:G -> C927R:G: adjacent_3p downward } 0 6 {C927R:G -> C943R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C943R:C -> C927R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C927R:G -> C944R:A: outward } 0 9 {C944R:A -> C927R:G: outward } 0 10 {C928R:G -> C929R:C: adjacent_5p upward } 0 11 {C929R:C -> C928R:G: adjacent_3p downward } 0 12 {C928R:G -> C942R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C942R:C -> C928R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C929R:C -> C941R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {C941R:G -> C929R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {C941R:G -> C942R:C: adjacent_5p upward } 0 17 {C942R:C -> C941R:G: adjacent_3p downward } 0 18 {C942R:C -> C943R:C: adjacent_5p upward } 0 19 {C943R:C -> C942R:C: adjacent_3p downward } 0 20 {C943R:C -> C944R:A: adjacent_5p } 0 21 {C944R:A -> C943R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C927R:G 0 1 C928R:G 0 2 C929R:C 0 3 C930R:G 0 4 C940R:U 0 5 C941R:G 0 6 C942R:C 0 7 C943R:C 0 [Edges] 0 {C927R:G -> C928R:G: adjacent_5p upward } 0 1 {C928R:G -> C927R:G: adjacent_3p downward } 0 2 {C927R:G -> C943R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C943R:C -> C927R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C928R:G -> C929R:C: adjacent_5p upward } 0 5 {C929R:C -> C928R:G: adjacent_3p downward } 0 6 {C928R:G -> C942R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C942R:C -> C928R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C929R:C -> C930R:G: adjacent_5p } 0 9 {C930R:G -> C929R:C: adjacent_3p } 0 10 {C929R:C -> C941R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C941R:G -> C929R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C930R:G -> C940R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {C940R:U -> C930R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {C930R:G -> C941R:G: outward } 0 15 {C941R:G -> C930R:G: outward } 0 16 {C940R:U -> C941R:G: adjacent_5p } 0 17 {C941R:G -> C940R:U: adjacent_3p } 0 18 {C941R:G -> C942R:C: adjacent_5p upward } 0 19 {C942R:C -> C941R:G: adjacent_3p downward } 0 20 {C942R:C -> C943R:C: adjacent_5p upward } 0 21 {C943R:C -> C942R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C928R:G 0 1 C929R:C 0 2 C930R:G 0 3 C931R:C 0 4 C939R:G 0 5 C940R:U 0 6 C941R:G 0 7 C942R:C 0 [Edges] 0 {C928R:G -> C929R:C: adjacent_5p upward } 0 1 {C929R:C -> C928R:G: adjacent_3p downward } 0 2 {C928R:G -> C942R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C942R:C -> C928R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C929R:C -> C930R:G: adjacent_5p } 0 5 {C930R:G -> C929R:C: adjacent_3p } 0 6 {C929R:C -> C941R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C941R:G -> C929R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C930R:G -> C931R:C: adjacent_5p upward } 0 9 {C931R:C -> C930R:G: adjacent_3p downward } 0 10 {C930R:G -> C940R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {C940R:U -> C930R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {C930R:G -> C941R:G: outward } 0 13 {C941R:G -> C930R:G: outward } 0 14 {C931R:C -> C939R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {C939R:G -> C931R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {C939R:G -> C940R:U: adjacent_5p upward } 0 17 {C940R:U -> C939R:G: adjacent_3p downward } 0 18 {C940R:U -> C941R:G: adjacent_5p } 0 19 {C941R:G -> C940R:U: adjacent_3p } 0 20 {C941R:G -> C942R:C: adjacent_5p upward } 0 21 {C942R:C -> C941R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C950R:G 0 1 C951R:G 0 2 C952R:G 0 3 C953R:G 0 4 C961R:C 0 5 C962R:C 0 6 C963R:C 0 7 C964R:C 0 [Edges] 0 {C950R:G -> C951R:G: adjacent_5p upward } 0 1 {C951R:G -> C950R:G: adjacent_3p downward } 0 2 {C950R:G -> C964R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C964R:C -> C950R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C951R:G -> C952R:G: adjacent_5p upward } 0 5 {C952R:G -> C951R:G: adjacent_3p downward } 0 6 {C951R:G -> C963R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C963R:C -> C951R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C952R:G -> C953R:G: adjacent_5p upward } 0 9 {C953R:G -> C952R:G: adjacent_3p downward } 0 10 {C952R:G -> C962R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C962R:C -> C952R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C953R:G -> C961R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C961R:C -> C953R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C961R:C -> C962R:C: adjacent_5p } 0 15 {C962R:C -> C961R:C: adjacent_3p } 0 16 {C962R:C -> C963R:C: adjacent_5p upward } 0 17 {C963R:C -> C962R:C: adjacent_3p downward } 0 18 {C963R:C -> C964R:C: adjacent_5p upward } 0 19 {C964R:C -> C963R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D1902R:C 0 1 D1903R:C 0 2 D1904R:G 0 3 D1905R:U 0 4 D1968R:G 0 5 D1969R:C 0 6 D1970R:G 0 7 D1971R:G 0 [Edges] 0 {D1902R:C -> D1903R:C: adjacent_5p upward } 0 1 {D1903R:C -> D1902R:C: adjacent_3p downward } 0 2 {D1902R:C -> D1971R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D1971R:G -> D1902R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D1903R:C -> D1904R:G: adjacent_5p upward } 0 5 {D1904R:G -> D1903R:C: adjacent_3p downward } 0 6 {D1903R:C -> D1970R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D1970R:G -> D1903R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D1904R:G -> D1905R:U: adjacent_5p upward } 0 9 {D1905R:U -> D1904R:G: adjacent_3p downward } 0 10 {D1904R:G -> D1969R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D1969R:C -> D1904R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D1904R:G -> D1970R:G: outward } 0 13 {D1970R:G -> D1904R:G: outward } 0 14 {D1905R:U -> D1968R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {D1968R:G -> D1905R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {D1968R:G -> D1969R:C: adjacent_5p upward } 0 17 {D1969R:C -> D1968R:G: adjacent_3p downward } 0 18 {D1969R:C -> D1970R:G: adjacent_5p } 0 19 {D1970R:G -> D1969R:C: adjacent_3p } 0 20 {D1970R:G -> D1971R:G: adjacent_5p upward } 0 21 {D1971R:G -> D1970R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D1903R:C 0 1 D1904R:G 0 2 D1905R:U 0 3 D1906R:G 0 4 D1967R:C 0 5 D1968R:G 0 6 D1969R:C 0 7 D1970R:G 0 [Edges] 0 {D1903R:C -> D1904R:G: adjacent_5p upward } 0 1 {D1904R:G -> D1903R:C: adjacent_3p downward } 0 2 {D1903R:C -> D1970R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D1970R:G -> D1903R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D1904R:G -> D1905R:U: adjacent_5p upward } 0 5 {D1905R:U -> D1904R:G: adjacent_3p downward } 0 6 {D1904R:G -> D1969R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D1969R:C -> D1904R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D1904R:G -> D1970R:G: outward } 0 9 {D1970R:G -> D1904R:G: outward } 0 10 {D1905R:U -> D1906R:G: adjacent_5p } 0 11 {D1906R:G -> D1905R:U: adjacent_3p } 0 12 {D1905R:U -> D1968R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {D1968R:G -> D1905R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {D1906R:G -> D1967R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D1967R:C -> D1906R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D1906R:G -> D1968R:G: outward } 0 17 {D1968R:G -> D1906R:G: outward } 0 18 {D1967R:C -> D1968R:G: adjacent_5p } 0 19 {D1968R:G -> D1967R:C: adjacent_3p } 0 20 {D1968R:G -> D1969R:C: adjacent_5p upward } 0 21 {D1969R:C -> D1968R:G: adjacent_3p downward } 0 22 {D1969R:C -> D1970R:G: adjacent_5p } 0 23 {D1970R:G -> D1969R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 D1904R:G 0 1 D1905R:U 0 2 D1906R:G 0 3 D1907R:A 0 4 D1966R:U 0 5 D1967R:C 0 6 D1968R:G 0 7 D1969R:C 0 [Edges] 0 {D1904R:G -> D1905R:U: adjacent_5p upward } 0 1 {D1905R:U -> D1904R:G: adjacent_3p downward } 0 2 {D1904R:G -> D1969R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D1969R:C -> D1904R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D1905R:U -> D1906R:G: adjacent_5p } 0 5 {D1906R:G -> D1905R:U: adjacent_3p } 0 6 {D1905R:U -> D1968R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {D1968R:G -> D1905R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {D1906R:G -> D1907R:A: adjacent_5p upward } 0 9 {D1907R:A -> D1906R:G: adjacent_3p downward } 0 10 {D1906R:G -> D1967R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D1967R:C -> D1906R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D1906R:G -> D1968R:G: outward } 0 13 {D1968R:G -> D1906R:G: outward } 0 14 {D1907R:A -> D1966R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {D1966R:U -> D1907R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {D1966R:U -> D1967R:C: adjacent_5p upward } 0 17 {D1967R:C -> D1966R:U: adjacent_3p downward } 0 18 {D1967R:C -> D1968R:G: adjacent_5p } 0 19 {D1968R:G -> D1967R:C: adjacent_3p } 0 20 {D1968R:G -> D1969R:C: adjacent_5p upward } 0 21 {D1969R:C -> D1968R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D1925R:U 0 1 D1926R:G 0 2 D1927R:G 0 3 D1928R:G 0 4 D1942R:C 0 5 D1943R:C 0 6 D1944R:A 0 7 D1945R:G 0 [Edges] 0 {D1925R:U -> D1926R:G: adjacent_5p upward } 0 1 {D1926R:G -> D1925R:U: adjacent_3p downward } 0 2 {D1925R:U -> D1945R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 3 {D1945R:G -> D1925R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 4 {D1926R:G -> D1927R:G: adjacent_5p upward } 0 5 {D1927R:G -> D1926R:G: adjacent_3p downward } 0 6 {D1926R:G -> D1944R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {D1944R:A -> D1926R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {D1927R:G -> D1928R:G: adjacent_5p upward } 0 9 {D1928R:G -> D1927R:G: adjacent_3p downward } 0 10 {D1927R:G -> D1943R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D1943R:C -> D1927R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D1927R:G -> D1944R:A: outward } 0 13 {D1944R:A -> D1927R:G: outward } 0 14 {D1928R:G -> D1942R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D1942R:C -> D1928R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D1942R:C -> D1943R:C: adjacent_5p } 0 17 {D1943R:C -> D1942R:C: adjacent_3p } 0 18 {D1943R:C -> D1944R:A: adjacent_5p upward } 0 19 {D1944R:A -> D1943R:C: adjacent_3p downward } 0 20 {D1944R:A -> D1945R:G: adjacent_5p upward } 0 21 {D1945R:G -> D1944R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D1926R:G 0 1 D1927R:G 0 2 D1928R:G 0 3 D1929R:C 0 4 D1941R:G 0 5 D1942R:C 0 6 D1943R:C 0 7 D1944R:A 0 [Edges] 0 {D1926R:G -> D1927R:G: adjacent_5p upward } 0 1 {D1927R:G -> D1926R:G: adjacent_3p downward } 0 2 {D1926R:G -> D1944R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {D1944R:A -> D1926R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {D1927R:G -> D1928R:G: adjacent_5p upward } 0 5 {D1928R:G -> D1927R:G: adjacent_3p downward } 0 6 {D1927R:G -> D1943R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D1943R:C -> D1927R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D1927R:G -> D1944R:A: outward } 0 9 {D1944R:A -> D1927R:G: outward } 0 10 {D1928R:G -> D1929R:C: adjacent_5p upward } 0 11 {D1929R:C -> D1928R:G: adjacent_3p downward } 0 12 {D1928R:G -> D1942R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D1942R:C -> D1928R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D1929R:C -> D1941R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D1941R:G -> D1929R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D1941R:G -> D1942R:C: adjacent_5p upward } 0 17 {D1942R:C -> D1941R:G: adjacent_3p downward } 0 18 {D1942R:C -> D1943R:C: adjacent_5p } 0 19 {D1943R:C -> D1942R:C: adjacent_3p } 0 20 {D1943R:C -> D1944R:A: adjacent_5p upward } 0 21 {D1944R:A -> D1943R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D1927R:G 0 1 D1928R:G 0 2 D1929R:C 0 3 D1930R:G 0 4 D1940R:U 0 5 D1941R:G 0 6 D1942R:C 0 7 D1943R:C 0 [Edges] 0 {D1927R:G -> D1928R:G: adjacent_5p upward } 0 1 {D1928R:G -> D1927R:G: adjacent_3p downward } 0 2 {D1927R:G -> D1943R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D1943R:C -> D1927R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D1928R:G -> D1929R:C: adjacent_5p upward } 0 5 {D1929R:C -> D1928R:G: adjacent_3p downward } 0 6 {D1928R:G -> D1942R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D1942R:C -> D1928R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D1929R:C -> D1930R:G: adjacent_5p } 0 9 {D1930R:G -> D1929R:C: adjacent_3p } 0 10 {D1929R:C -> D1941R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D1941R:G -> D1929R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D1930R:G -> D1940R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {D1940R:U -> D1930R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {D1930R:G -> D1941R:G: outward } 0 15 {D1941R:G -> D1930R:G: outward } 0 16 {D1940R:U -> D1941R:G: adjacent_5p } 0 17 {D1941R:G -> D1940R:U: adjacent_3p } 0 18 {D1941R:G -> D1942R:C: adjacent_5p upward } 0 19 {D1942R:C -> D1941R:G: adjacent_3p downward } 0 20 {D1942R:C -> D1943R:C: adjacent_5p } 0 21 {D1943R:C -> D1942R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D1928R:G 0 1 D1929R:C 0 2 D1930R:G 0 3 D1931R:C 0 4 D1939R:G 0 5 D1940R:U 0 6 D1941R:G 0 7 D1942R:C 0 [Edges] 0 {D1928R:G -> D1929R:C: adjacent_5p upward } 0 1 {D1929R:C -> D1928R:G: adjacent_3p downward } 0 2 {D1928R:G -> D1942R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D1942R:C -> D1928R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D1929R:C -> D1930R:G: adjacent_5p } 0 5 {D1930R:G -> D1929R:C: adjacent_3p } 0 6 {D1929R:C -> D1941R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D1941R:G -> D1929R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D1930R:G -> D1931R:C: adjacent_5p upward } 0 9 {D1931R:C -> D1930R:G: adjacent_3p downward } 0 10 {D1930R:G -> D1940R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {D1940R:U -> D1930R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {D1930R:G -> D1941R:G: outward } 0 13 {D1941R:G -> D1930R:G: outward } 0 14 {D1931R:C -> D1939R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D1939R:G -> D1931R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D1939R:G -> D1940R:U: adjacent_5p upward } 0 17 {D1940R:U -> D1939R:G: adjacent_3p downward } 0 18 {D1940R:U -> D1941R:G: adjacent_5p } 0 19 {D1941R:G -> D1940R:U: adjacent_3p } 0 20 {D1941R:G -> D1942R:C: adjacent_5p upward } 0 21 {D1942R:C -> D1941R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D1950R:G 0 1 D1951R:G 0 2 D1952R:G 0 3 D1953R:G 0 4 D1961R:C 0 5 D1962R:C 0 6 D1963R:C 0 7 D1964R:C 0 [Edges] 0 {D1950R:G -> D1951R:G: adjacent_5p upward } 0 1 {D1951R:G -> D1950R:G: adjacent_3p downward } 0 2 {D1950R:G -> D1964R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D1964R:C -> D1950R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D1951R:G -> D1952R:G: adjacent_5p upward } 0 5 {D1952R:G -> D1951R:G: adjacent_3p downward } 0 6 {D1951R:G -> D1963R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D1963R:C -> D1951R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D1952R:G -> D1953R:G: adjacent_5p upward } 0 9 {D1953R:G -> D1952R:G: adjacent_3p downward } 0 10 {D1952R:G -> D1962R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D1962R:C -> D1952R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D1953R:G -> D1961R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D1961R:C -> D1953R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D1961R:C -> D1962R:C: adjacent_5p } 0 15 {D1962R:C -> D1961R:C: adjacent_3p } 0 16 {D1962R:C -> D1963R:C: adjacent_5p } 0 17 {D1963R:C -> D1962R:C: adjacent_3p } 0 18 {D1963R:C -> D1964R:C: adjacent_5p upward } 0 19 {D1964R:C -> D1963R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 C902R:G 0 1 C903R:G 0 2 C904R:C 0 3 C905R:G 0 4 C967R:C 0 5 C968R:G 0 6 C969R:C 0 7 C970R:C 0 [Edges] 0 {C902R:G -> C903R:G: adjacent_5p upward } 0 1 {C903R:G -> C902R:G: adjacent_3p downward } 0 2 {C902R:G -> C970R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 3 {C970R:C -> C902R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 4 {C903R:G -> C904R:C: adjacent_5p upward } 0 5 {C904R:C -> C903R:G: adjacent_3p downward } 0 6 {C903R:G -> C969R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C969R:C -> C903R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C904R:C -> C905R:G: adjacent_5p upward } 0 9 {C905R:G -> C904R:C: adjacent_3p downward } 0 10 {C904R:C -> C968R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C968R:G -> C904R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C905R:G -> C967R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C967R:C -> C905R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C905R:G -> C968R:G: outward } 0 15 {C968R:G -> C905R:G: outward } 0 16 {C967R:C -> C968R:G: adjacent_5p upward } 0 17 {C968R:G -> C967R:C: adjacent_3p downward } 0 18 {C968R:G -> C969R:C: adjacent_5p upward } 0 19 {C969R:C -> C968R:G: adjacent_3p downward } 0 20 {C969R:C -> C970R:C: adjacent_5p upward } 0 21 {C970R:C -> C969R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C903R:G 0 1 C904R:C 0 2 C905R:G 0 3 C906R:G 0 4 C966R:C 0 5 C967R:C 0 6 C968R:G 0 7 C969R:C 0 [Edges] 0 {C903R:G -> C904R:C: adjacent_5p upward } 0 1 {C904R:C -> C903R:G: adjacent_3p downward } 0 2 {C903R:G -> C969R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C969R:C -> C903R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C904R:C -> C905R:G: adjacent_5p upward } 0 5 {C905R:G -> C904R:C: adjacent_3p downward } 0 6 {C904R:C -> C968R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C968R:G -> C904R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C905R:G -> C906R:G: adjacent_5p upward } 0 9 {C906R:G -> C905R:G: adjacent_3p downward } 0 10 {C905R:G -> C967R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C967R:C -> C905R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C905R:G -> C968R:G: outward } 0 13 {C968R:G -> C905R:G: outward } 0 14 {C906R:G -> C966R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C966R:C -> C906R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C966R:C -> C967R:C: adjacent_5p } 0 17 {C967R:C -> C966R:C: adjacent_3p } 0 18 {C967R:C -> C968R:G: adjacent_5p upward } 0 19 {C968R:G -> C967R:C: adjacent_3p downward } 0 20 {C968R:G -> C969R:C: adjacent_5p upward } 0 21 {C969R:C -> C968R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C904R:C 0 1 C905R:G 0 2 C906R:G 0 3 C907R:C 0 4 C965R:G 0 5 C966R:C 0 6 C967R:C 0 7 C968R:G 0 [Edges] 0 {C904R:C -> C905R:G: adjacent_5p upward } 0 1 {C905R:G -> C904R:C: adjacent_3p downward } 0 2 {C904R:C -> C968R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C968R:G -> C904R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C905R:G -> C906R:G: adjacent_5p upward } 0 5 {C906R:G -> C905R:G: adjacent_3p downward } 0 6 {C905R:G -> C967R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C967R:C -> C905R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C905R:G -> C968R:G: outward } 0 9 {C968R:G -> C905R:G: outward } 0 10 {C906R:G -> C907R:C: adjacent_5p upward } 0 11 {C907R:C -> C906R:G: adjacent_3p downward } 0 12 {C906R:G -> C966R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C966R:C -> C906R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C907R:C -> C965R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 15 {C965R:G -> C907R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 16 {C965R:G -> C966R:C: adjacent_5p upward } 0 17 {C966R:C -> C965R:G: adjacent_3p downward } 0 18 {C966R:C -> C967R:C: adjacent_5p } 0 19 {C967R:C -> C966R:C: adjacent_3p } 0 20 {C967R:C -> C968R:G: adjacent_5p upward } 0 21 {C968R:G -> C967R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C910R:G 0 1 C911R:C 0 2 C912R:U 0 3 C913R:C 0 4 C921R:G 0 5 C922R:A 0 6 C923R:G 0 7 C924R:C 0 [Edges] 0 {C910R:G -> C911R:C: adjacent_5p upward } 0 1 {C911R:C -> C910R:G: adjacent_3p downward } 0 2 {C910R:G -> C924R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C924R:C -> C910R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C911R:C -> C912R:U: adjacent_5p upward } 0 5 {C912R:U -> C911R:C: adjacent_3p downward } 0 6 {C911R:C -> C923R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C923R:G -> C911R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C912R:U -> C913R:C: adjacent_5p upward } 0 9 {C913R:C -> C912R:U: adjacent_3p downward } 0 10 {C912R:U -> C922R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C922R:A -> C912R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C913R:C -> C921R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C921R:G -> C913R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C921R:G -> C922R:A: adjacent_5p upward } 0 15 {C922R:A -> C921R:G: adjacent_3p downward } 0 16 {C922R:A -> C923R:G: adjacent_5p upward } 0 17 {C923R:G -> C922R:A: adjacent_3p downward } 0 18 {C923R:G -> C924R:C: adjacent_5p upward } 0 19 {C924R:C -> C923R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C925R:G 0 1 C926R:C 0 2 C927R:U 0 3 C928R:C 0 4 C940R:G 0 5 C941R:A 0 6 C942R:G 0 7 C943R:A 0 [Edges] 0 {C925R:G -> C926R:C: adjacent_5p upward } 0 1 {C926R:C -> C925R:G: adjacent_3p downward } 0 2 {C925R:G -> C943R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {C943R:A -> C925R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {C926R:C -> C927R:U: adjacent_5p } 0 5 {C927R:U -> C926R:C: adjacent_3p } 0 6 {C926R:C -> C942R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C942R:G -> C926R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C927R:U -> C928R:C: adjacent_5p upward } 0 9 {C928R:C -> C927R:U: adjacent_3p downward } 0 10 {C927R:U -> C941R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C941R:A -> C927R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C927R:U -> C942R:G: outward } 0 13 {C942R:G -> C927R:U: outward } 0 14 {C928R:C -> C940R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {C940R:G -> C928R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {C940R:G -> C941R:A: adjacent_5p upward } 0 17 {C941R:A -> C940R:G: adjacent_3p downward } 0 18 {C941R:A -> C942R:G: adjacent_5p upward } 0 19 {C942R:G -> C941R:A: adjacent_3p downward } 0 20 {C942R:G -> C943R:A: adjacent_5p upward } 0 21 {C943R:A -> C942R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C926R:C 0 1 C927R:U 0 2 C928R:C 0 3 C929R:G 0 4 C939R:C 0 5 C940R:G 0 6 C941R:A 0 7 C942R:G 0 [Edges] 0 {C926R:C -> C927R:U: adjacent_5p } 0 1 {C927R:U -> C926R:C: adjacent_3p } 0 2 {C926R:C -> C942R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C942R:G -> C926R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C927R:U -> C928R:C: adjacent_5p upward } 0 5 {C928R:C -> C927R:U: adjacent_3p downward } 0 6 {C927R:U -> C941R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C941R:A -> C927R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C927R:U -> C942R:G: outward } 0 9 {C942R:G -> C927R:U: outward } 0 10 {C928R:C -> C929R:G: adjacent_5p } 0 11 {C929R:G -> C928R:C: adjacent_3p } 0 12 {C928R:C -> C940R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C940R:G -> C928R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C929R:G -> C939R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C939R:C -> C929R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C929R:G -> C940R:G: outward } 0 17 {C940R:G -> C929R:G: outward } 0 18 {C939R:C -> C940R:G: adjacent_5p } 0 19 {C940R:G -> C939R:C: adjacent_3p } 0 20 {C940R:G -> C941R:A: adjacent_5p upward } 0 21 {C941R:A -> C940R:G: adjacent_3p downward } 0 22 {C941R:A -> C942R:G: adjacent_5p upward } 0 23 {C942R:G -> C941R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 C927R:U 0 1 C928R:C 0 2 C929R:G 0 3 C930R:C 0 4 C938R:G 0 5 C939R:C 0 6 C940R:G 0 7 C941R:A 0 [Edges] 0 {C927R:U -> C928R:C: adjacent_5p upward } 0 1 {C928R:C -> C927R:U: adjacent_3p downward } 0 2 {C927R:U -> C941R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C941R:A -> C927R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C928R:C -> C929R:G: adjacent_5p } 0 5 {C929R:G -> C928R:C: adjacent_3p } 0 6 {C928R:C -> C940R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C940R:G -> C928R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C929R:G -> C930R:C: adjacent_5p upward } 0 9 {C930R:C -> C929R:G: adjacent_3p downward } 0 10 {C929R:G -> C939R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C939R:C -> C929R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C929R:G -> C940R:G: outward } 0 13 {C940R:G -> C929R:G: outward } 0 14 {C930R:C -> C938R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {C938R:G -> C930R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {C938R:G -> C939R:C: adjacent_5p upward } 0 17 {C939R:C -> C938R:G: adjacent_3p downward } 0 18 {C939R:C -> C940R:G: adjacent_5p } 0 19 {C940R:G -> C939R:C: adjacent_3p } 0 20 {C940R:G -> C941R:A: adjacent_5p upward } 0 21 {C941R:A -> C940R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C948R:G 0 1 C949R:U 0 2 C950R:A 0 3 C951R:G 0 4 C961R:C 0 5 C962R:U 0 6 C963R:A 0 7 C964R:C 0 [Edges] 0 {C948R:G -> C949R:U: adjacent_5p upward } 0 1 {C949R:U -> C948R:G: adjacent_3p downward } 0 2 {C948R:G -> C964R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C964R:C -> C948R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C949R:U -> C950R:A: adjacent_5p } 0 5 {C950R:A -> C949R:U: adjacent_3p } 0 6 {C949R:U -> C963R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C963R:A -> C949R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C950R:A -> C951R:G: adjacent_5p upward } 0 9 {C951R:G -> C950R:A: adjacent_3p downward } 0 10 {C950R:A -> C962R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C962R:U -> C950R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C950R:A -> C963R:A: outward } 0 13 {C963R:A -> C950R:A: outward } 0 14 {C951R:G -> C961R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C961R:C -> C951R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C961R:C -> C962R:U: adjacent_5p upward } 0 17 {C962R:U -> C961R:C: adjacent_3p downward } 0 18 {C962R:U -> C963R:A: adjacent_5p } 0 19 {C963R:A -> C962R:U: adjacent_3p } 0 20 {C963R:A -> C964R:C: adjacent_5p upward } 0 21 {C964R:C -> C963R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C949R:U 0 1 C950R:A 0 2 C951R:G 0 3 C952R:G 0 4 C960R:C 0 5 C961R:C 0 6 C962R:U 0 7 C963R:A 0 [Edges] 0 {C949R:U -> C950R:A: adjacent_5p } 0 1 {C950R:A -> C949R:U: adjacent_3p } 0 2 {C949R:U -> C963R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C963R:A -> C949R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C950R:A -> C951R:G: adjacent_5p upward } 0 5 {C951R:G -> C950R:A: adjacent_3p downward } 0 6 {C950R:A -> C962R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C962R:U -> C950R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C950R:A -> C963R:A: outward } 0 9 {C963R:A -> C950R:A: outward } 0 10 {C951R:G -> C952R:G: adjacent_5p upward } 0 11 {C952R:G -> C951R:G: adjacent_3p downward } 0 12 {C951R:G -> C961R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C961R:C -> C951R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C952R:G -> C960R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C960R:C -> C952R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C960R:C -> C961R:C: adjacent_5p } 0 17 {C961R:C -> C960R:C: adjacent_3p } 0 18 {C961R:C -> C962R:U: adjacent_5p upward } 0 19 {C962R:U -> C961R:C: adjacent_3p downward } 0 20 {C962R:U -> C963R:A: adjacent_5p } 0 21 {C963R:A -> C962R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D902R:G 0 1 D903R:G 0 2 D904R:C 0 3 D905R:G 0 4 D967R:C 0 5 D968R:G 0 6 D969R:C 0 7 D970R:C 0 [Edges] 0 {D902R:G -> D903R:G: adjacent_5p upward } 0 1 {D903R:G -> D902R:G: adjacent_3p downward } 0 2 {D902R:G -> D970R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 3 {D970R:C -> D902R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 4 {D903R:G -> D904R:C: adjacent_5p upward } 0 5 {D904R:C -> D903R:G: adjacent_3p downward } 0 6 {D903R:G -> D969R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D969R:C -> D903R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D904R:C -> D905R:G: adjacent_5p upward } 0 9 {D905R:G -> D904R:C: adjacent_3p downward } 0 10 {D904R:C -> D968R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D968R:G -> D904R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D905R:G -> D967R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D967R:C -> D905R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D905R:G -> D968R:G: outward } 0 15 {D968R:G -> D905R:G: outward } 0 16 {D967R:C -> D968R:G: adjacent_5p upward } 0 17 {D968R:G -> D967R:C: adjacent_3p downward } 0 18 {D968R:G -> D969R:C: adjacent_5p upward } 0 19 {D969R:C -> D968R:G: adjacent_3p downward } 0 20 {D969R:C -> D970R:C: adjacent_5p upward } 0 21 {D970R:C -> D969R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D903R:G 0 1 D904R:C 0 2 D905R:G 0 3 D906R:G 0 4 D966R:C 0 5 D967R:C 0 6 D968R:G 0 7 D969R:C 0 [Edges] 0 {D903R:G -> D904R:C: adjacent_5p upward } 0 1 {D904R:C -> D903R:G: adjacent_3p downward } 0 2 {D903R:G -> D969R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D969R:C -> D903R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D904R:C -> D905R:G: adjacent_5p upward } 0 5 {D905R:G -> D904R:C: adjacent_3p downward } 0 6 {D904R:C -> D968R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D968R:G -> D904R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D905R:G -> D906R:G: adjacent_5p upward } 0 9 {D906R:G -> D905R:G: adjacent_3p downward } 0 10 {D905R:G -> D967R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D967R:C -> D905R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D905R:G -> D968R:G: outward } 0 13 {D968R:G -> D905R:G: outward } 0 14 {D906R:G -> D966R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D966R:C -> D906R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D966R:C -> D967R:C: adjacent_5p upward } 0 17 {D967R:C -> D966R:C: adjacent_3p downward } 0 18 {D967R:C -> D968R:G: adjacent_5p upward } 0 19 {D968R:G -> D967R:C: adjacent_3p downward } 0 20 {D968R:G -> D969R:C: adjacent_5p upward } 0 21 {D969R:C -> D968R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D904R:C 0 1 D905R:G 0 2 D906R:G 0 3 D907R:C 0 4 D965R:G 0 5 D966R:C 0 6 D967R:C 0 7 D968R:G 0 [Edges] 0 {D904R:C -> D905R:G: adjacent_5p upward } 0 1 {D905R:G -> D904R:C: adjacent_3p downward } 0 2 {D904R:C -> D968R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D968R:G -> D904R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D905R:G -> D906R:G: adjacent_5p upward } 0 5 {D906R:G -> D905R:G: adjacent_3p downward } 0 6 {D905R:G -> D967R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D967R:C -> D905R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D905R:G -> D968R:G: outward } 0 9 {D968R:G -> D905R:G: outward } 0 10 {D906R:G -> D907R:C: adjacent_5p } 0 11 {D907R:C -> D906R:G: adjacent_3p } 0 12 {D906R:G -> D966R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D966R:C -> D906R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D907R:C -> D965R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 15 {D965R:G -> D907R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 16 {D965R:G -> D966R:C: adjacent_5p upward } 0 17 {D966R:C -> D965R:G: adjacent_3p downward } 0 18 {D966R:C -> D967R:C: adjacent_5p upward } 0 19 {D967R:C -> D966R:C: adjacent_3p downward } 0 20 {D967R:C -> D968R:G: adjacent_5p upward } 0 21 {D968R:G -> D967R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D910R:G 0 1 D911R:C 0 2 D912R:U 0 3 D913R:C 0 4 D921R:G 0 5 D922R:A 0 6 D923R:G 0 7 D924R:C 0 [Edges] 0 {D910R:G -> D911R:C: adjacent_5p upward } 0 1 {D911R:C -> D910R:G: adjacent_3p downward } 0 2 {D910R:G -> D924R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D924R:C -> D910R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D911R:C -> D912R:U: adjacent_5p upward } 0 5 {D912R:U -> D911R:C: adjacent_3p downward } 0 6 {D911R:C -> D923R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D923R:G -> D911R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D912R:U -> D913R:C: adjacent_5p } 0 9 {D913R:C -> D912R:U: adjacent_3p } 0 10 {D912R:U -> D922R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D922R:A -> D912R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D913R:C -> D921R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D921R:G -> D913R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D921R:G -> D922R:A: adjacent_5p upward } 0 15 {D922R:A -> D921R:G: adjacent_3p downward } 0 16 {D922R:A -> D923R:G: adjacent_5p upward } 0 17 {D923R:G -> D922R:A: adjacent_3p downward } 0 18 {D923R:G -> D924R:C: adjacent_5p upward } 0 19 {D924R:C -> D923R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D925R:G 0 1 D926R:C 0 2 D927R:U 0 3 D928R:C 0 4 D940R:G 0 5 D941R:A 0 6 D942R:G 0 7 D943R:A 0 [Edges] 0 {D925R:G -> D926R:C: adjacent_5p upward } 0 1 {D926R:C -> D925R:G: adjacent_3p downward } 0 2 {D925R:G -> D943R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {D943R:A -> D925R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {D926R:C -> D927R:U: adjacent_5p } 0 5 {D927R:U -> D926R:C: adjacent_3p } 0 6 {D926R:C -> D942R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D942R:G -> D926R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D927R:U -> D928R:C: adjacent_5p upward } 0 9 {D928R:C -> D927R:U: adjacent_3p downward } 0 10 {D927R:U -> D941R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D941R:A -> D927R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D928R:C -> D940R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D940R:G -> D928R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D940R:G -> D941R:A: adjacent_5p upward } 0 15 {D941R:A -> D940R:G: adjacent_3p downward } 0 16 {D941R:A -> D942R:G: adjacent_5p upward } 0 17 {D942R:G -> D941R:A: adjacent_3p downward } 0 18 {D942R:G -> D943R:A: adjacent_5p upward } 0 19 {D943R:A -> D942R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D926R:C 0 1 D927R:U 0 2 D928R:C 0 3 D929R:G 0 4 D939R:C 0 5 D940R:G 0 6 D941R:A 0 7 D942R:G 0 [Edges] 0 {D926R:C -> D927R:U: adjacent_5p } 0 1 {D927R:U -> D926R:C: adjacent_3p } 0 2 {D926R:C -> D942R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D942R:G -> D926R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D927R:U -> D928R:C: adjacent_5p upward } 0 5 {D928R:C -> D927R:U: adjacent_3p downward } 0 6 {D927R:U -> D941R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D941R:A -> D927R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D928R:C -> D929R:G: adjacent_5p upward } 0 9 {D929R:G -> D928R:C: adjacent_3p downward } 0 10 {D928R:C -> D940R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D940R:G -> D928R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D929R:G -> D939R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D939R:C -> D929R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D929R:G -> D940R:G: outward } 0 15 {D940R:G -> D929R:G: outward } 0 16 {D939R:C -> D940R:G: adjacent_5p } 0 17 {D940R:G -> D939R:C: adjacent_3p } 0 18 {D940R:G -> D941R:A: adjacent_5p upward } 0 19 {D941R:A -> D940R:G: adjacent_3p downward } 0 20 {D941R:A -> D942R:G: adjacent_5p upward } 0 21 {D942R:G -> D941R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D927R:U 0 1 D928R:C 0 2 D929R:G 0 3 D930R:C 0 4 D938R:G 0 5 D939R:C 0 6 D940R:G 0 7 D941R:A 0 [Edges] 0 {D927R:U -> D928R:C: adjacent_5p upward } 0 1 {D928R:C -> D927R:U: adjacent_3p downward } 0 2 {D927R:U -> D941R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D941R:A -> D927R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D928R:C -> D929R:G: adjacent_5p upward } 0 5 {D929R:G -> D928R:C: adjacent_3p downward } 0 6 {D928R:C -> D940R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D940R:G -> D928R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D929R:G -> D930R:C: adjacent_5p upward } 0 9 {D930R:C -> D929R:G: adjacent_3p downward } 0 10 {D929R:G -> D939R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D939R:C -> D929R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D929R:G -> D940R:G: outward } 0 13 {D940R:G -> D929R:G: outward } 0 14 {D930R:C -> D938R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D938R:G -> D930R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D938R:G -> D939R:C: adjacent_5p upward } 0 17 {D939R:C -> D938R:G: adjacent_3p downward } 0 18 {D939R:C -> D940R:G: adjacent_5p } 0 19 {D940R:G -> D939R:C: adjacent_3p } 0 20 {D940R:G -> D941R:A: adjacent_5p upward } 0 21 {D941R:A -> D940R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D948R:G 0 1 D949R:U 0 2 D950R:A 0 3 D951R:G 0 4 D961R:C 0 5 D962R:U 0 6 D963R:A 0 7 D964R:C 0 [Edges] 0 {D948R:G -> D949R:U: adjacent_5p upward } 0 1 {D949R:U -> D948R:G: adjacent_3p downward } 0 2 {D948R:G -> D964R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D964R:C -> D948R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D949R:U -> D950R:A: adjacent_5p } 0 5 {D950R:A -> D949R:U: adjacent_3p } 0 6 {D949R:U -> D963R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D963R:A -> D949R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D950R:A -> D951R:G: adjacent_5p upward } 0 9 {D951R:G -> D950R:A: adjacent_3p downward } 0 10 {D950R:A -> D962R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D962R:U -> D950R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {D950R:A -> D963R:A: outward } 0 13 {D963R:A -> D950R:A: outward } 0 14 {D951R:G -> D961R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D961R:C -> D951R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D961R:C -> D962R:U: adjacent_5p } 0 17 {D962R:U -> D961R:C: adjacent_3p } 0 18 {D962R:U -> D963R:A: adjacent_5p upward } 0 19 {D963R:A -> D962R:U: adjacent_3p downward } 0 20 {D963R:A -> D964R:C: adjacent_5p upward } 0 21 {D964R:C -> D963R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D949R:U 0 1 D950R:A 0 2 D951R:G 0 3 D952R:G 0 4 D960R:C 0 5 D961R:C 0 6 D962R:U 0 7 D963R:A 0 [Edges] 0 {D949R:U -> D950R:A: adjacent_5p } 0 1 {D950R:A -> D949R:U: adjacent_3p } 0 2 {D949R:U -> D963R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D963R:A -> D949R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D950R:A -> D951R:G: adjacent_5p upward } 0 5 {D951R:G -> D950R:A: adjacent_3p downward } 0 6 {D950R:A -> D962R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D962R:U -> D950R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D950R:A -> D963R:A: outward } 0 9 {D963R:A -> D950R:A: outward } 0 10 {D951R:G -> D952R:G: adjacent_5p upward } 0 11 {D952R:G -> D951R:G: adjacent_3p downward } 0 12 {D951R:G -> D961R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D961R:C -> D951R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D952R:G -> D960R:C: pairing antiparallel cis Ww/Ww } 0 15 {D960R:C -> D952R:G: pairing antiparallel cis Ww/Ww } 0 16 {D952R:G -> D961R:C: outward } 0 17 {D961R:C -> D952R:G: outward } 0 18 {D960R:C -> D961R:C: adjacent_5p } 0 19 {D961R:C -> D960R:C: adjacent_3p } 0 20 {D961R:C -> D962R:U: adjacent_5p } 0 21 {D962R:U -> D961R:C: adjacent_3p } 0 22 {D962R:U -> D963R:A: adjacent_5p upward } 0 23 {D963R:A -> D962R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 B502R:C 0 1 B503R:G 0 2 B504R:G 0 3 B505R:C 0 4 B569R:G 0 5 B570R:C 0 6 B571R:C 0 7 B572R:G 0 [Edges] 0 {B502R:C -> B503R:G: adjacent_5p upward } 0 1 {B503R:G -> B502R:C: adjacent_3p downward } 0 2 {B502R:C -> B572R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B572R:G -> B502R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B503R:G -> B504R:G: adjacent_5p upward } 0 5 {B504R:G -> B503R:G: adjacent_3p downward } 0 6 {B503R:G -> B571R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B571R:C -> B503R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B503R:G -> B572R:G: outward } 0 9 {B572R:G -> B503R:G: outward } 0 10 {B504R:G -> B505R:C: adjacent_5p upward } 0 11 {B505R:C -> B504R:G: adjacent_3p downward } 0 12 {B504R:G -> B570R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B570R:C -> B504R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B505R:C -> B569R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B569R:G -> B505R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B569R:G -> B570R:C: adjacent_5p upward } 0 17 {B570R:C -> B569R:G: adjacent_3p downward } 0 18 {B570R:C -> B571R:C: adjacent_5p upward } 0 19 {B571R:C -> B570R:C: adjacent_3p downward } 0 20 {B571R:C -> B572R:G: adjacent_5p } 0 21 {B572R:G -> B571R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B503R:G 0 1 B504R:G 0 2 B505R:C 0 3 B506R:G 0 4 B568R:C 0 5 B569R:G 0 6 B570R:C 0 7 B571R:C 0 [Edges] 0 {B503R:G -> B504R:G: adjacent_5p upward } 0 1 {B504R:G -> B503R:G: adjacent_3p downward } 0 2 {B503R:G -> B571R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B571R:C -> B503R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B504R:G -> B505R:C: adjacent_5p upward } 0 5 {B505R:C -> B504R:G: adjacent_3p downward } 0 6 {B504R:G -> B570R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B570R:C -> B504R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B505R:C -> B506R:G: adjacent_5p upward } 0 9 {B506R:G -> B505R:C: adjacent_3p downward } 0 10 {B505R:C -> B569R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B569R:G -> B505R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B506R:G -> B568R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B568R:C -> B506R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B506R:G -> B569R:G: outward } 0 15 {B569R:G -> B506R:G: outward } 0 16 {B568R:C -> B569R:G: adjacent_5p upward } 0 17 {B569R:G -> B568R:C: adjacent_3p downward } 0 18 {B569R:G -> B570R:C: adjacent_5p upward } 0 19 {B570R:C -> B569R:G: adjacent_3p downward } 0 20 {B570R:C -> B571R:C: adjacent_5p upward } 0 21 {B571R:C -> B570R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B504R:G 0 1 B505R:C 0 2 B506R:G 0 3 B507R:G 0 4 B567R:C 0 5 B568R:C 0 6 B569R:G 0 7 B570R:C 0 [Edges] 0 {B504R:G -> B505R:C: adjacent_5p upward } 0 1 {B505R:C -> B504R:G: adjacent_3p downward } 0 2 {B504R:G -> B570R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B570R:C -> B504R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B505R:C -> B506R:G: adjacent_5p upward } 0 5 {B506R:G -> B505R:C: adjacent_3p downward } 0 6 {B505R:C -> B569R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B569R:G -> B505R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B506R:G -> B507R:G: adjacent_5p upward } 0 9 {B507R:G -> B506R:G: adjacent_3p downward } 0 10 {B506R:G -> B568R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B568R:C -> B506R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B506R:G -> B569R:G: outward } 0 13 {B569R:G -> B506R:G: outward } 0 14 {B507R:G -> B567R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B567R:C -> B507R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B567R:C -> B568R:C: adjacent_5p upward } 0 17 {B568R:C -> B567R:C: adjacent_3p downward } 0 18 {B568R:C -> B569R:G: adjacent_5p upward } 0 19 {B569R:G -> B568R:C: adjacent_3p downward } 0 20 {B569R:G -> B570R:C: adjacent_5p upward } 0 21 {B570R:C -> B569R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B510R:G 0 1 B511R:U 0 2 B512R:U 0 3 B513R:C 0 4 B523R:G 0 5 B524R:A 0 6 B525R:A 0 7 B526R:C 0 [Edges] 0 {B510R:G -> B511R:U: adjacent_5p upward } 0 1 {B511R:U -> B510R:G: adjacent_3p downward } 0 2 {B510R:G -> B526R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B526R:C -> B510R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B511R:U -> B512R:U: adjacent_5p } 0 5 {B512R:U -> B511R:U: adjacent_3p } 0 6 {B511R:U -> B525R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B525R:A -> B511R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B512R:U -> B513R:C: adjacent_5p upward } 0 9 {B513R:C -> B512R:U: adjacent_3p downward } 0 10 {B512R:U -> B524R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B524R:A -> B512R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B513R:C -> B523R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B523R:G -> B513R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B523R:G -> B524R:A: adjacent_5p upward } 0 15 {B524R:A -> B523R:G: adjacent_3p downward } 0 16 {B524R:A -> B525R:A: adjacent_5p upward } 0 17 {B525R:A -> B524R:A: adjacent_3p downward } 0 18 {B525R:A -> B526R:C: adjacent_5p upward } 0 19 {B526R:C -> B525R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B511R:U 0 1 B512R:U 0 2 B513R:C 0 3 B514R:A 0 4 B522R:A 0 5 B523R:G 0 6 B524R:A 0 7 B525R:A 0 [Edges] 0 {B511R:U -> B512R:U: adjacent_5p } 0 1 {B512R:U -> B511R:U: adjacent_3p } 0 2 {B511R:U -> B525R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B525R:A -> B511R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B512R:U -> B513R:C: adjacent_5p upward } 0 5 {B513R:C -> B512R:U: adjacent_3p downward } 0 6 {B512R:U -> B524R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B524R:A -> B512R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B513R:C -> B514R:A: adjacent_5p } 0 9 {B514R:A -> B513R:C: adjacent_3p } 0 10 {B513R:C -> B523R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B523R:G -> B513R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B514R:A -> B522R:A: pairing antiparallel trans one_hbond 40 Wh/Ss } 0 13 {B522R:A -> B514R:A: pairing antiparallel trans one_hbond 40 Ss/Wh } 0 14 {B514R:A -> B523R:G: outward } 0 15 {B523R:G -> B514R:A: outward } 0 16 {B522R:A -> B523R:G: adjacent_5p } 0 17 {B523R:G -> B522R:A: adjacent_3p } 0 18 {B523R:G -> B524R:A: adjacent_5p upward } 0 19 {B524R:A -> B523R:G: adjacent_3p downward } 0 20 {B524R:A -> B525R:A: adjacent_5p upward } 0 21 {B525R:A -> B524R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B527R:G 0 1 B528R:G 0 2 B529R:C 0 3 B530R:G 0 4 B542R:C 0 5 B543R:G 0 6 B544R:C 0 7 B545R:A 0 [Edges] 0 {B527R:G -> B528R:G: adjacent_5p upward } 0 1 {B528R:G -> B527R:G: adjacent_3p downward } 0 2 {B527R:G -> B545R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {B545R:A -> B527R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {B528R:G -> B529R:C: adjacent_5p upward } 0 5 {B529R:C -> B528R:G: adjacent_3p downward } 0 6 {B528R:G -> B544R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B544R:C -> B528R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B528R:G -> B545R:A: outward } 0 9 {B545R:A -> B528R:G: outward } 0 10 {B529R:C -> B530R:G: adjacent_5p } 0 11 {B530R:G -> B529R:C: adjacent_3p } 0 12 {B529R:C -> B543R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B543R:G -> B529R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B530R:G -> B542R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B542R:C -> B530R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B530R:G -> B543R:G: outward } 0 17 {B543R:G -> B530R:G: outward } 0 18 {B542R:C -> B543R:G: adjacent_5p upward } 0 19 {B543R:G -> B542R:C: adjacent_3p downward } 0 20 {B543R:G -> B544R:C: adjacent_5p upward } 0 21 {B544R:C -> B543R:G: adjacent_3p downward } 0 22 {B544R:C -> B545R:A: adjacent_5p upward } 0 23 {B545R:A -> B544R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 B528R:G 0 1 B529R:C 0 2 B530R:G 0 3 B531R:G 0 4 B541R:C 0 5 B542R:C 0 6 B543R:G 0 7 B544R:C 0 [Edges] 0 {B528R:G -> B529R:C: adjacent_5p upward } 0 1 {B529R:C -> B528R:G: adjacent_3p downward } 0 2 {B528R:G -> B544R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B544R:C -> B528R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B529R:C -> B530R:G: adjacent_5p } 0 5 {B530R:G -> B529R:C: adjacent_3p } 0 6 {B529R:C -> B543R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B543R:G -> B529R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B530R:G -> B531R:G: adjacent_5p upward } 0 9 {B531R:G -> B530R:G: adjacent_3p downward } 0 10 {B530R:G -> B542R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B542R:C -> B530R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B530R:G -> B543R:G: outward } 0 13 {B543R:G -> B530R:G: outward } 0 14 {B531R:G -> B541R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B541R:C -> B531R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B541R:C -> B542R:C: adjacent_5p upward } 0 17 {B542R:C -> B541R:C: adjacent_3p downward } 0 18 {B542R:C -> B543R:G: adjacent_5p upward } 0 19 {B543R:G -> B542R:C: adjacent_3p downward } 0 20 {B543R:G -> B544R:C: adjacent_5p upward } 0 21 {B544R:C -> B543R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B529R:C 0 1 B530R:G 0 2 B531R:G 0 3 B532R:A 0 4 B540R:U 0 5 B541R:C 0 6 B542R:C 0 7 B543R:G 0 [Edges] 0 {B529R:C -> B530R:G: adjacent_5p } 0 1 {B530R:G -> B529R:C: adjacent_3p } 0 2 {B529R:C -> B543R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B543R:G -> B529R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B530R:G -> B531R:G: adjacent_5p upward } 0 5 {B531R:G -> B530R:G: adjacent_3p downward } 0 6 {B530R:G -> B542R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B542R:C -> B530R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B530R:G -> B543R:G: outward } 0 9 {B543R:G -> B530R:G: outward } 0 10 {B531R:G -> B532R:A: adjacent_5p upward } 0 11 {B532R:A -> B531R:G: adjacent_3p downward } 0 12 {B531R:G -> B541R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B541R:C -> B531R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B532R:A -> B540R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B540R:U -> B532R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B540R:U -> B541R:C: adjacent_5p upward } 0 17 {B541R:C -> B540R:U: adjacent_3p downward } 0 18 {B541R:C -> B542R:C: adjacent_5p upward } 0 19 {B542R:C -> B541R:C: adjacent_3p downward } 0 20 {B542R:C -> B543R:G: adjacent_5p upward } 0 21 {B543R:G -> B542R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B550R:G 0 1 B551R:C 0 2 B552R:U 0 3 B553R:G 0 4 B563R:C 0 5 B564R:G 0 6 B565R:G 0 7 B566R:C 0 [Edges] 0 {B550R:G -> B551R:C: adjacent_5p upward } 0 1 {B551R:C -> B550R:G: adjacent_3p downward } 0 2 {B550R:G -> B566R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B566R:C -> B550R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B551R:C -> B552R:U: adjacent_5p upward } 0 5 {B552R:U -> B551R:C: adjacent_3p downward } 0 6 {B551R:C -> B565R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B565R:G -> B551R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B552R:U -> B553R:G: adjacent_5p } 0 9 {B553R:G -> B552R:U: adjacent_3p } 0 10 {B552R:U -> B564R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B564R:G -> B552R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {B553R:G -> B563R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B563R:C -> B553R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B553R:G -> B564R:G: outward } 0 15 {B564R:G -> B553R:G: outward } 0 16 {B563R:C -> B564R:G: adjacent_5p } 0 17 {B564R:G -> B563R:C: adjacent_3p } 0 18 {B564R:G -> B565R:G: adjacent_5p upward } 0 19 {B565R:G -> B564R:G: adjacent_3p downward } 0 20 {B565R:G -> B566R:C: adjacent_5p upward } 0 21 {B566R:C -> B565R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B551R:C 0 1 B552R:U 0 2 B553R:G 0 3 B554R:G 0 4 B562R:C 0 5 B563R:C 0 6 B564R:G 0 7 B565R:G 0 [Edges] 0 {B551R:C -> B552R:U: adjacent_5p upward } 0 1 {B552R:U -> B551R:C: adjacent_3p downward } 0 2 {B551R:C -> B565R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B565R:G -> B551R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B552R:U -> B553R:G: adjacent_5p } 0 5 {B553R:G -> B552R:U: adjacent_3p } 0 6 {B552R:U -> B564R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B564R:G -> B552R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {B553R:G -> B554R:G: adjacent_5p upward } 0 9 {B554R:G -> B553R:G: adjacent_3p downward } 0 10 {B553R:G -> B563R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B563R:C -> B553R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B553R:G -> B564R:G: outward } 0 13 {B564R:G -> B553R:G: outward } 0 14 {B554R:G -> B562R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B562R:C -> B554R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B562R:C -> B563R:C: adjacent_5p } 0 17 {B563R:C -> B562R:C: adjacent_3p } 0 18 {B563R:C -> B564R:G: adjacent_5p } 0 19 {B564R:G -> B563R:C: adjacent_3p } 0 20 {B564R:G -> B565R:G: adjacent_5p upward } 0 21 {B565R:G -> B564R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:G 0 3 A5R:A 0 4 A13R:U 0 5 A14R:C 0 6 A15R:C 0 7 A16R:C 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A16R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A15R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A14R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A13R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A13R:U -> A14R:C: adjacent_5p } 0 15 {A14R:C -> A13R:U: adjacent_3p } 0 16 {A14R:C -> A15R:C: adjacent_5p } 0 17 {A15R:C -> A14R:C: adjacent_3p } 0 18 {A15R:C -> A16R:C: adjacent_5p } 0 19 {A16R:C -> A15R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:G 0 2 A5R:A 0 3 A6R:U 0 4 A12R:A 0 5 A13R:U 0 6 A14R:C 0 7 A15R:C 0 [Edges] 0 {A3R:G -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A15R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A14R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:A -> A6R:U: adjacent_5p upward } 0 9 {A6R:U -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A13R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A12R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A12R:A -> A13R:U: adjacent_5p upward } 0 15 {A13R:U -> A12R:A: adjacent_3p downward } 0 16 {A13R:U -> A14R:C: adjacent_5p } 0 17 {A14R:C -> A13R:U: adjacent_3p } 0 18 {A14R:C -> A15R:C: adjacent_5p } 0 19 {A15R:C -> A14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 C1R:C 0 1 C2R:G 0 2 C3R:C 0 3 C4R:U 0 4 F26R:A 0 5 F27R:G 0 6 F28R:C 0 7 F29R:G 0 [Edges] 0 {C1R:C -> C2R:G: adjacent_5p upward } 0 1 {C2R:G -> C1R:C: adjacent_3p downward } 0 2 {C1R:C -> F29R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {F29R:G -> C1R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C2R:G -> C3R:C: adjacent_5p upward } 0 5 {C3R:C -> C2R:G: adjacent_3p downward } 0 6 {C2R:G -> F28R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {F28R:C -> C2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C2R:G -> F29R:G: outward } 0 9 {F29R:G -> C2R:G: outward } 0 10 {C3R:C -> C4R:U: adjacent_5p upward } 0 11 {C4R:U -> C3R:C: adjacent_3p downward } 0 12 {C3R:C -> F27R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {F27R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C4R:U -> F26R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {F26R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {F26R:A -> F27R:G: adjacent_5p upward } 0 17 {F27R:G -> F26R:A: adjacent_3p downward } 0 18 {F27R:G -> F28R:C: adjacent_5p upward } 0 19 {F28R:C -> F27R:G: adjacent_3p downward } 0 20 {F28R:C -> F29R:G: adjacent_5p upward } 0 21 {F29R:G -> F28R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C2R:G 0 1 C3R:C 0 2 C4R:U 0 3 C5R:C 0 4 F25R:G 0 5 F26R:A 0 6 F27R:G 0 7 F28R:C 0 [Edges] 0 {C2R:G -> C3R:C: adjacent_5p upward } 0 1 {C3R:C -> C2R:G: adjacent_3p downward } 0 2 {C2R:G -> F28R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {F28R:C -> C2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C3R:C -> C4R:U: adjacent_5p upward } 0 5 {C4R:U -> C3R:C: adjacent_3p downward } 0 6 {C3R:C -> F27R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {F27R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:U -> C5R:C: adjacent_5p upward } 0 9 {C5R:C -> C4R:U: adjacent_3p downward } 0 10 {C4R:U -> F26R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {F26R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C5R:C -> F25R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {F25R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {F25R:G -> F26R:A: adjacent_5p upward } 0 15 {F26R:A -> F25R:G: adjacent_3p downward } 0 16 {F26R:A -> F27R:G: adjacent_5p upward } 0 17 {F27R:G -> F26R:A: adjacent_3p downward } 0 18 {F27R:G -> F28R:C: adjacent_5p upward } 0 19 {F28R:C -> F27R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C3R:C 0 1 C4R:U 0 2 C5R:C 0 3 C6R:C 0 4 F24R:G 0 5 F25R:G 0 6 F26R:A 0 7 F27R:G 0 [Edges] 0 {C3R:C -> C4R:U: adjacent_5p upward } 0 1 {C4R:U -> C3R:C: adjacent_3p downward } 0 2 {C3R:C -> F27R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {F27R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C4R:U -> C5R:C: adjacent_5p upward } 0 5 {C5R:C -> C4R:U: adjacent_3p downward } 0 6 {C4R:U -> F26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {F26R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C5R:C -> C6R:C: adjacent_5p upward } 0 9 {C6R:C -> C5R:C: adjacent_3p downward } 0 10 {C5R:C -> F25R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {F25R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C6R:C -> F24R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {F24R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {F24R:G -> F25R:G: adjacent_5p upward } 0 15 {F25R:G -> F24R:G: adjacent_3p downward } 0 16 {F25R:G -> F26R:A: adjacent_5p upward } 0 17 {F26R:A -> F25R:G: adjacent_3p downward } 0 18 {F26R:A -> F27R:G: adjacent_5p upward } 0 19 {F27R:G -> F26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C4R:U 0 1 C5R:C 0 2 C6R:C 0 3 C7R:U 0 4 F23R:C 0 5 F24R:G 0 6 F25R:G 0 7 F26R:A 0 [Edges] 0 {C4R:U -> C5R:C: adjacent_5p upward } 0 1 {C5R:C -> C4R:U: adjacent_3p downward } 0 2 {C4R:U -> F26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {F26R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C5R:C -> C6R:C: adjacent_5p upward } 0 5 {C6R:C -> C5R:C: adjacent_3p downward } 0 6 {C5R:C -> F25R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {F25R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C6R:C -> C7R:U: adjacent_5p upward } 0 9 {C7R:U -> C6R:C: adjacent_3p downward } 0 10 {C6R:C -> F24R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {F24R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C7R:U -> F23R:C: pairing antiparallel cis one_hbond 100 Ws/Wh } 0 13 {F23R:C -> C7R:U: pairing antiparallel cis one_hbond 100 Wh/Ws } 0 14 {F23R:C -> F24R:G: adjacent_5p upward } 0 15 {F24R:G -> F23R:C: adjacent_3p downward } 0 16 {F24R:G -> F25R:G: adjacent_5p upward } 0 17 {F25R:G -> F24R:G: adjacent_3p downward } 0 18 {F25R:G -> F26R:A: adjacent_5p upward } 0 19 {F26R:A -> F25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C5R:C 0 1 C6R:C 0 2 C7R:U 0 3 C8R:C 0 4 F22R:C 0 5 F23R:C 0 6 F24R:G 0 7 F25R:G 0 [Edges] 0 {C5R:C -> C6R:C: adjacent_5p upward } 0 1 {C6R:C -> C5R:C: adjacent_3p downward } 0 2 {C5R:C -> F25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {F25R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C6R:C -> C7R:U: adjacent_5p upward } 0 5 {C7R:U -> C6R:C: adjacent_3p downward } 0 6 {C6R:C -> F24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {F24R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C7R:U -> C8R:C: adjacent_5p upward } 0 9 {C8R:C -> C7R:U: adjacent_3p downward } 0 10 {C7R:U -> F23R:C: pairing antiparallel cis one_hbond 100 Ws/Wh } 0 11 {F23R:C -> C7R:U: pairing antiparallel cis one_hbond 100 Wh/Ws } 0 12 {C8R:C -> F22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 13 {F22R:C -> C8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 14 {F22R:C -> F23R:C: adjacent_5p upward } 0 15 {F23R:C -> F22R:C: adjacent_3p downward } 0 16 {F23R:C -> F24R:G: adjacent_5p upward } 0 17 {F24R:G -> F23R:C: adjacent_3p downward } 0 18 {F24R:G -> F25R:G: adjacent_5p upward } 0 19 {F25R:G -> F24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C6R:C 0 1 C7R:U 0 2 C8R:C 0 3 C9R:A 0 4 F21R:A 0 5 F22R:C 0 6 F23R:C 0 7 F24R:G 0 [Edges] 0 {C6R:C -> C7R:U: adjacent_5p upward } 0 1 {C7R:U -> C6R:C: adjacent_3p downward } 0 2 {C6R:C -> F24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {F24R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C7R:U -> C8R:C: adjacent_5p upward } 0 5 {C8R:C -> C7R:U: adjacent_3p downward } 0 6 {C7R:U -> F23R:C: pairing antiparallel cis one_hbond 100 Ws/Wh } 0 7 {F23R:C -> C7R:U: pairing antiparallel cis one_hbond 100 Wh/Ws } 0 8 {C8R:C -> C9R:A: adjacent_5p inward } 0 9 {C9R:A -> C8R:C: adjacent_3p inward } 0 10 {C8R:C -> F22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 11 {F22R:C -> C8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 12 {C9R:A -> F21R:A: pairing parallel trans II Hh/Hh } 0 13 {F21R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 14 {F21R:A -> F22R:C: adjacent_5p upward } 0 15 {F22R:C -> F21R:A: adjacent_3p downward } 0 16 {F22R:C -> F23R:C: adjacent_5p upward } 0 17 {F23R:C -> F22R:C: adjacent_3p downward } 0 18 {F23R:C -> F24R:G: adjacent_5p upward } 0 19 {F24R:G -> F23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D1R:C 0 1 D2R:G 0 2 D3R:C 0 3 D4R:U 0 4 D26R:A 0 5 D27R:G 0 6 D28R:C 0 7 D29R:G 0 [Edges] 0 {D1R:C -> D2R:G: adjacent_5p } 0 1 {D2R:G -> D1R:C: adjacent_3p } 0 2 {D1R:C -> D29R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D29R:G -> D1R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D2R:G -> D3R:C: adjacent_5p upward } 0 5 {D3R:C -> D2R:G: adjacent_3p downward } 0 6 {D2R:G -> D28R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D28R:C -> D2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D2R:G -> D29R:G: outward } 0 9 {D29R:G -> D2R:G: outward } 0 10 {D3R:C -> D4R:U: adjacent_5p } 0 11 {D4R:U -> D3R:C: adjacent_3p } 0 12 {D3R:C -> D27R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D27R:G -> D3R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D4R:U -> D26R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {D26R:A -> D4R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {D26R:A -> D27R:G: adjacent_5p upward } 0 17 {D27R:G -> D26R:A: adjacent_3p downward } 0 18 {D27R:G -> D28R:C: adjacent_5p upward } 0 19 {D28R:C -> D27R:G: adjacent_3p downward } 0 20 {D28R:C -> D29R:G: adjacent_5p upward } 0 21 {D29R:G -> D28R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D2R:G 0 1 D3R:C 0 2 D4R:U 0 3 D5R:C 0 4 D25R:G 0 5 D26R:A 0 6 D27R:G 0 7 D28R:C 0 [Edges] 0 {D2R:G -> D3R:C: adjacent_5p upward } 0 1 {D3R:C -> D2R:G: adjacent_3p downward } 0 2 {D2R:G -> D28R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D28R:C -> D2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D3R:C -> D4R:U: adjacent_5p } 0 5 {D4R:U -> D3R:C: adjacent_3p } 0 6 {D3R:C -> D27R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D27R:G -> D3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D4R:U -> D5R:C: adjacent_5p } 0 9 {D5R:C -> D4R:U: adjacent_3p } 0 10 {D4R:U -> D26R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D26R:A -> D4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D5R:C -> D25R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D25R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D25R:G -> D26R:A: adjacent_5p upward } 0 15 {D26R:A -> D25R:G: adjacent_3p downward } 0 16 {D26R:A -> D27R:G: adjacent_5p upward } 0 17 {D27R:G -> D26R:A: adjacent_3p downward } 0 18 {D27R:G -> D28R:C: adjacent_5p upward } 0 19 {D28R:C -> D27R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D3R:C 0 1 D4R:U 0 2 D5R:C 0 3 D6R:C 0 4 D24R:G 0 5 D25R:G 0 6 D26R:A 0 7 D27R:G 0 [Edges] 0 {D3R:C -> D4R:U: adjacent_5p } 0 1 {D4R:U -> D3R:C: adjacent_3p } 0 2 {D3R:C -> D27R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D27R:G -> D3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D4R:U -> D5R:C: adjacent_5p } 0 5 {D5R:C -> D4R:U: adjacent_3p } 0 6 {D4R:U -> D26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D26R:A -> D4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D5R:C -> D6R:C: adjacent_5p upward } 0 9 {D6R:C -> D5R:C: adjacent_3p downward } 0 10 {D5R:C -> D25R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D25R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D6R:C -> D24R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D24R:G -> D6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D6R:C -> D25R:G: outward } 0 15 {D25R:G -> D6R:C: outward } 0 16 {D24R:G -> D25R:G: adjacent_5p upward } 0 17 {D25R:G -> D24R:G: adjacent_3p downward } 0 18 {D25R:G -> D26R:A: adjacent_5p upward } 0 19 {D26R:A -> D25R:G: adjacent_3p downward } 0 20 {D26R:A -> D27R:G: adjacent_5p upward } 0 21 {D27R:G -> D26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D5R:C 0 1 D6R:C 0 2 D7R:U 0 3 D8R:C 0 4 D22R:C 0 5 D23R:C 0 6 D24R:G 0 7 D25R:G 0 [Edges] 0 {D5R:C -> D6R:C: adjacent_5p upward } 0 1 {D6R:C -> D5R:C: adjacent_3p downward } 0 2 {D5R:C -> D25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D25R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D6R:C -> D7R:U: adjacent_5p upward } 0 5 {D7R:U -> D6R:C: adjacent_3p downward } 0 6 {D6R:C -> D24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D24R:G -> D6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D6R:C -> D25R:G: outward } 0 9 {D25R:G -> D6R:C: outward } 0 10 {D7R:U -> D8R:C: adjacent_5p upward } 0 11 {D8R:C -> D7R:U: adjacent_3p downward } 0 12 {D8R:C -> D22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 13 {D22R:C -> D8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 14 {D22R:C -> D23R:C: adjacent_5p upward } 0 15 {D23R:C -> D22R:C: adjacent_3p downward } 0 16 {D23R:C -> D24R:G: adjacent_5p upward } 0 17 {D24R:G -> D23R:C: adjacent_3p downward } 0 18 {D24R:G -> D25R:G: adjacent_5p upward } 0 19 {D25R:G -> D24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 9 . . . . 19 . [GraphModel] [Vertices] 0 D6R:C 0 1 D7R:U 0 2 D8R:C 0 3 D9R:A 0 4 D21R:A 0 5 D22R:C 0 6 D23R:C 0 7 D24R:G 0 [Edges] 0 {D6R:C -> D7R:U: adjacent_5p upward } 0 1 {D7R:U -> D6R:C: adjacent_3p downward } 0 2 {D6R:C -> D24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D24R:G -> D6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D7R:U -> D8R:C: adjacent_5p upward } 0 5 {D8R:C -> D7R:U: adjacent_3p downward } 0 6 {D8R:C -> D9R:A: adjacent_5p inward } 0 7 {D9R:A -> D8R:C: adjacent_3p inward } 0 8 {D8R:C -> D22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 9 {D22R:C -> D8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 10 {D9R:A -> D21R:A: pairing parallel trans II Hh/Hh } 0 11 {D21R:A -> D9R:A: pairing parallel trans II Hh/Hh } 0 12 {D21R:A -> D22R:C: adjacent_5p upward } 0 13 {D22R:C -> D21R:A: adjacent_3p downward } 0 14 {D22R:C -> D23R:C: adjacent_5p upward } 0 15 {D23R:C -> D22R:C: adjacent_3p downward } 0 16 {D23R:C -> D24R:G: adjacent_5p upward } 0 17 {D24R:G -> D23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 C2R:G 0 1 C3R:C 0 2 C4R:U 0 3 C5R:C 0 4 C25R:G 0 5 C26R:A 0 6 C27R:G 0 7 C28R:C 0 [Edges] 0 {C2R:G -> C3R:C: adjacent_5p upward } 0 1 {C3R:C -> C2R:G: adjacent_3p downward } 0 2 {C2R:G -> C28R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C28R:C -> C2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C3R:C -> C4R:U: adjacent_5p } 0 5 {C4R:U -> C3R:C: adjacent_3p } 0 6 {C3R:C -> C27R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C27R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:U -> C5R:C: adjacent_5p upward } 0 9 {C5R:C -> C4R:U: adjacent_3p downward } 0 10 {C4R:U -> C26R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C26R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C5R:C -> C25R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C25R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C25R:G -> C26R:A: adjacent_5p upward } 0 15 {C26R:A -> C25R:G: adjacent_3p downward } 0 16 {C26R:A -> C27R:G: adjacent_5p upward } 0 17 {C27R:G -> C26R:A: adjacent_3p downward } 0 18 {C27R:G -> C28R:C: adjacent_5p upward } 0 19 {C28R:C -> C27R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C3R:C 0 1 C4R:U 0 2 C5R:C 0 3 C6R:C 0 4 C24R:G 0 5 C25R:G 0 6 C26R:A 0 7 C27R:G 0 [Edges] 0 {C3R:C -> C4R:U: adjacent_5p } 0 1 {C4R:U -> C3R:C: adjacent_3p } 0 2 {C3R:C -> C27R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C27R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C4R:U -> C5R:C: adjacent_5p upward } 0 5 {C5R:C -> C4R:U: adjacent_3p downward } 0 6 {C4R:U -> C26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C26R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C5R:C -> C6R:C: adjacent_5p upward } 0 9 {C6R:C -> C5R:C: adjacent_3p downward } 0 10 {C5R:C -> C25R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C25R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C6R:C -> C24R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C24R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C24R:G -> C25R:G: adjacent_5p upward } 0 15 {C25R:G -> C24R:G: adjacent_3p downward } 0 16 {C25R:G -> C26R:A: adjacent_5p upward } 0 17 {C26R:A -> C25R:G: adjacent_3p downward } 0 18 {C26R:A -> C27R:G: adjacent_5p upward } 0 19 {C27R:G -> C26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C4R:U 0 1 C5R:C 0 2 C6R:C 0 3 C7R:U 0 4 C23R:C 0 5 C24R:G 0 6 C25R:G 0 7 C26R:A 0 [Edges] 0 {C4R:U -> C5R:C: adjacent_5p upward } 0 1 {C5R:C -> C4R:U: adjacent_3p downward } 0 2 {C4R:U -> C26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C26R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C5R:C -> C6R:C: adjacent_5p upward } 0 5 {C6R:C -> C5R:C: adjacent_3p downward } 0 6 {C5R:C -> C25R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C25R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C6R:C -> C7R:U: adjacent_5p upward } 0 9 {C7R:U -> C6R:C: adjacent_3p downward } 0 10 {C6R:C -> C24R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C24R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C7R:U -> C23R:C: pairing antiparallel cis one_hbond 100 Ws/Wh } 0 13 {C23R:C -> C7R:U: pairing antiparallel cis one_hbond 100 Wh/Ws } 0 14 {C23R:C -> C24R:G: adjacent_5p upward } 0 15 {C24R:G -> C23R:C: adjacent_3p downward } 0 16 {C24R:G -> C25R:G: adjacent_5p upward } 0 17 {C25R:G -> C24R:G: adjacent_3p downward } 0 18 {C25R:G -> C26R:A: adjacent_5p upward } 0 19 {C26R:A -> C25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C5R:C 0 1 C6R:C 0 2 C7R:U 0 3 C8R:C 0 4 C22R:C 0 5 C23R:C 0 6 C24R:G 0 7 C25R:G 0 [Edges] 0 {C5R:C -> C6R:C: adjacent_5p upward } 0 1 {C6R:C -> C5R:C: adjacent_3p downward } 0 2 {C5R:C -> C25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C25R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C6R:C -> C7R:U: adjacent_5p upward } 0 5 {C7R:U -> C6R:C: adjacent_3p downward } 0 6 {C6R:C -> C24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C24R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C7R:U -> C8R:C: adjacent_5p upward } 0 9 {C8R:C -> C7R:U: adjacent_3p downward } 0 10 {C7R:U -> C23R:C: pairing antiparallel cis one_hbond 100 Ws/Wh } 0 11 {C23R:C -> C7R:U: pairing antiparallel cis one_hbond 100 Wh/Ws } 0 12 {C8R:C -> C22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 13 {C22R:C -> C8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 14 {C22R:C -> C23R:C: adjacent_5p upward } 0 15 {C23R:C -> C22R:C: adjacent_3p downward } 0 16 {C23R:C -> C24R:G: adjacent_5p upward } 0 17 {C24R:G -> C23R:C: adjacent_3p downward } 0 18 {C24R:G -> C25R:G: adjacent_5p upward } 0 19 {C25R:G -> C24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C6R:C 0 1 C7R:U 0 2 C8R:C 0 3 C9R:A 0 4 C21R:A 0 5 C22R:C 0 6 C23R:C 0 7 C24R:G 0 [Edges] 0 {C6R:C -> C7R:U: adjacent_5p upward } 0 1 {C7R:U -> C6R:C: adjacent_3p downward } 0 2 {C6R:C -> C24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C24R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C7R:U -> C8R:C: adjacent_5p upward } 0 5 {C8R:C -> C7R:U: adjacent_3p downward } 0 6 {C7R:U -> C23R:C: pairing antiparallel cis one_hbond 100 Ws/Wh } 0 7 {C23R:C -> C7R:U: pairing antiparallel cis one_hbond 100 Wh/Ws } 0 8 {C8R:C -> C9R:A: adjacent_5p inward } 0 9 {C9R:A -> C8R:C: adjacent_3p inward } 0 10 {C8R:C -> C22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 11 {C22R:C -> C8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 12 {C9R:A -> C21R:A: pairing parallel trans II Hh/Hh } 0 13 {C21R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 14 {C21R:A -> C22R:C: adjacent_5p upward } 0 15 {C22R:C -> C21R:A: adjacent_3p downward } 0 16 {C22R:C -> C23R:C: adjacent_5p upward } 0 17 {C23R:C -> C22R:C: adjacent_3p downward } 0 18 {C23R:C -> C24R:G: adjacent_5p upward } 0 19 {C24R:G -> C23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D2R:G 0 1 D3R:C 0 2 D4R:U 0 3 D5R:C 0 4 D25R:G 0 5 D26R:A 0 6 D27R:G 0 7 D28R:C 0 [Edges] 0 {D2R:G -> D3R:C: adjacent_5p upward } 0 1 {D3R:C -> D2R:G: adjacent_3p downward } 0 2 {D2R:G -> D28R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D28R:C -> D2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D3R:C -> D4R:U: adjacent_5p } 0 5 {D4R:U -> D3R:C: adjacent_3p } 0 6 {D3R:C -> D27R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D27R:G -> D3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D4R:U -> D5R:C: adjacent_5p upward } 0 9 {D5R:C -> D4R:U: adjacent_3p downward } 0 10 {D4R:U -> D26R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D26R:A -> D4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D5R:C -> D25R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D25R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D25R:G -> D26R:A: adjacent_5p upward } 0 15 {D26R:A -> D25R:G: adjacent_3p downward } 0 16 {D26R:A -> D27R:G: adjacent_5p upward } 0 17 {D27R:G -> D26R:A: adjacent_3p downward } 0 18 {D27R:G -> D28R:C: adjacent_5p upward } 0 19 {D28R:C -> D27R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D3R:C 0 1 D4R:U 0 2 D5R:C 0 3 D6R:C 0 4 D24R:G 0 5 D25R:G 0 6 D26R:A 0 7 D27R:G 0 [Edges] 0 {D3R:C -> D4R:U: adjacent_5p } 0 1 {D4R:U -> D3R:C: adjacent_3p } 0 2 {D3R:C -> D27R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D27R:G -> D3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D4R:U -> D5R:C: adjacent_5p upward } 0 5 {D5R:C -> D4R:U: adjacent_3p downward } 0 6 {D4R:U -> D26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D26R:A -> D4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D5R:C -> D6R:C: adjacent_5p } 0 9 {D6R:C -> D5R:C: adjacent_3p } 0 10 {D5R:C -> D25R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D25R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D6R:C -> D24R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D24R:G -> D6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D24R:G -> D25R:G: adjacent_5p upward } 0 15 {D25R:G -> D24R:G: adjacent_3p downward } 0 16 {D25R:G -> D26R:A: adjacent_5p upward } 0 17 {D26R:A -> D25R:G: adjacent_3p downward } 0 18 {D26R:A -> D27R:G: adjacent_5p upward } 0 19 {D27R:G -> D26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D4R:U 0 1 D5R:C 0 2 D6R:C 0 3 D7R:U 0 4 D23R:C 0 5 D24R:G 0 6 D25R:G 0 7 D26R:A 0 [Edges] 0 {D4R:U -> D5R:C: adjacent_5p upward } 0 1 {D5R:C -> D4R:U: adjacent_3p downward } 0 2 {D4R:U -> D26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D26R:A -> D4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D5R:C -> D6R:C: adjacent_5p } 0 5 {D6R:C -> D5R:C: adjacent_3p } 0 6 {D5R:C -> D25R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D25R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D6R:C -> D7R:U: adjacent_5p upward } 0 9 {D7R:U -> D6R:C: adjacent_3p downward } 0 10 {D6R:C -> D24R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D24R:G -> D6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D7R:U -> D23R:C: pairing antiparallel cis one_hbond 100 Ws/Wh } 0 13 {D23R:C -> D7R:U: pairing antiparallel cis one_hbond 100 Wh/Ws } 0 14 {D23R:C -> D24R:G: adjacent_5p upward } 0 15 {D24R:G -> D23R:C: adjacent_3p downward } 0 16 {D24R:G -> D25R:G: adjacent_5p upward } 0 17 {D25R:G -> D24R:G: adjacent_3p downward } 0 18 {D25R:G -> D26R:A: adjacent_5p upward } 0 19 {D26R:A -> D25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D5R:C 0 1 D6R:C 0 2 D7R:U 0 3 D8R:C 0 4 D22R:C 0 5 D23R:C 0 6 D24R:G 0 7 D25R:G 0 [Edges] 0 {D5R:C -> D6R:C: adjacent_5p } 0 1 {D6R:C -> D5R:C: adjacent_3p } 0 2 {D5R:C -> D25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D25R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D6R:C -> D7R:U: adjacent_5p upward } 0 5 {D7R:U -> D6R:C: adjacent_3p downward } 0 6 {D6R:C -> D24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D24R:G -> D6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D7R:U -> D8R:C: adjacent_5p upward } 0 9 {D8R:C -> D7R:U: adjacent_3p downward } 0 10 {D7R:U -> D23R:C: pairing antiparallel cis one_hbond 100 Ws/Wh } 0 11 {D23R:C -> D7R:U: pairing antiparallel cis one_hbond 100 Wh/Ws } 0 12 {D8R:C -> D22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 13 {D22R:C -> D8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 14 {D22R:C -> D23R:C: adjacent_5p upward } 0 15 {D23R:C -> D22R:C: adjacent_3p downward } 0 16 {D23R:C -> D24R:G: adjacent_5p upward } 0 17 {D24R:G -> D23R:C: adjacent_3p downward } 0 18 {D24R:G -> D25R:G: adjacent_5p upward } 0 19 {D25R:G -> D24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D6R:C 0 1 D7R:U 0 2 D8R:C 0 3 D9R:A 0 4 D21R:A 0 5 D22R:C 0 6 D23R:C 0 7 D24R:G 0 [Edges] 0 {D6R:C -> D7R:U: adjacent_5p upward } 0 1 {D7R:U -> D6R:C: adjacent_3p downward } 0 2 {D6R:C -> D24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D24R:G -> D6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D7R:U -> D8R:C: adjacent_5p upward } 0 5 {D8R:C -> D7R:U: adjacent_3p downward } 0 6 {D7R:U -> D23R:C: pairing antiparallel cis one_hbond 100 Ws/Wh } 0 7 {D23R:C -> D7R:U: pairing antiparallel cis one_hbond 100 Wh/Ws } 0 8 {D8R:C -> D9R:A: adjacent_5p inward } 0 9 {D9R:A -> D8R:C: adjacent_3p inward } 0 10 {D8R:C -> D22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 11 {D22R:C -> D8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 12 {D9R:A -> D21R:A: pairing parallel trans II Hh/Hh } 0 13 {D21R:A -> D9R:A: pairing parallel trans II Hh/Hh } 0 14 {D21R:A -> D22R:C: adjacent_5p upward } 0 15 {D22R:C -> D21R:A: adjacent_3p downward } 0 16 {D22R:C -> D23R:C: adjacent_5p upward } 0 17 {D23R:C -> D22R:C: adjacent_3p downward } 0 18 {D23R:C -> D24R:G: adjacent_5p upward } 0 19 {D24R:G -> D23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B138R:G 0 1 B139R:A 0 2 B140R:C 0 3 B141R:C 0 4 B156R:G 0 5 B157R:A 0 6 B158R:C 0 7 B159R:C 0 [Edges] 0 {B138R:G -> B139R:A: adjacent_5p upward } 0 1 {B139R:A -> B138R:G: adjacent_3p downward } 0 2 {B138R:G -> B159R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B159R:C -> B138R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B139R:A -> B140R:C: adjacent_5p upward } 0 5 {B140R:C -> B139R:A: adjacent_3p downward } 0 6 {B139R:A -> B158R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 7 {B158R:C -> B139R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 8 {B140R:C -> B141R:C: adjacent_5p } 0 9 {B141R:C -> B140R:C: adjacent_3p } 0 10 {B140R:C -> B157R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 11 {B157R:A -> B140R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 12 {B141R:C -> B156R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B156R:G -> B141R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B156R:G -> B157R:A: adjacent_5p upward } 0 15 {B157R:A -> B156R:G: adjacent_3p downward } 0 16 {B157R:A -> B158R:C: adjacent_5p upward } 0 17 {B158R:C -> B157R:A: adjacent_3p downward } 0 18 {B158R:C -> B159R:C: adjacent_5p } 0 19 {B159R:C -> B158R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B143R:C 0 1 B144R:C 0 2 B145R:C 0 3 B146R:G 0 4 B151R:C 0 5 B152R:G 0 6 B153R:G 0 7 B154R:G 0 [Edges] 0 {B143R:C -> B144R:C: adjacent_5p } 0 1 {B144R:C -> B143R:C: adjacent_3p } 0 2 {B143R:C -> B154R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B154R:G -> B143R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B144R:C -> B145R:C: adjacent_5p upward } 0 5 {B145R:C -> B144R:C: adjacent_3p downward } 0 6 {B144R:C -> B153R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B153R:G -> B144R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B145R:C -> B146R:G: adjacent_5p upward } 0 9 {B146R:G -> B145R:C: adjacent_3p downward } 0 10 {B145R:C -> B152R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B152R:G -> B145R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B146R:G -> B151R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B151R:C -> B146R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B146R:G -> B152R:G: outward } 0 15 {B152R:G -> B146R:G: outward } 0 16 {B151R:C -> B152R:G: adjacent_5p } 0 17 {B152R:G -> B151R:C: adjacent_3p } 0 18 {B152R:G -> B153R:G: adjacent_5p upward } 0 19 {B153R:G -> B152R:G: adjacent_3p downward } 0 20 {B153R:G -> B154R:G: adjacent_5p upward } 0 21 {B154R:G -> B153R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:A 0 3 A5R:G 0 4 A27R:U 0 5 A28R:U 0 6 A29R:G 0 7 A30R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A30R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:A: adjacent_5p } 0 5 {A4R:A -> A3R:U: adjacent_3p } 0 6 {A4R:A -> A5R:G: adjacent_5p upward } 0 7 {A5R:G -> A4R:A: adjacent_3p downward } 0 8 {A4R:A -> A28R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {A28R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A5R:G -> A27R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A27R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A27R:U -> A28R:U: adjacent_5p } 0 13 {A28R:U -> A27R:U: adjacent_3p } 0 14 {A28R:U -> A29R:G: adjacent_5p } 0 15 {A29R:G -> A28R:U: adjacent_3p } 0 16 {A29R:G -> A30R:C: adjacent_5p upward } 0 17 {A30R:C -> A29R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:G 0 2 A6R:A 0 3 A7R:A 0 4 A25R:U 0 5 A26R:U 0 6 A27R:U 0 7 A28R:U 0 [Edges] 0 {A4R:A -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> A28R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A28R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:G -> A6R:A: adjacent_5p upward } 0 5 {A6R:A -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> A27R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A27R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A6R:A -> A7R:A: adjacent_5p upward } 0 9 {A7R:A -> A6R:A: adjacent_3p downward } 0 10 {A6R:A -> A26R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A26R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:A -> A25R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A25R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A25R:U -> A26R:U: adjacent_5p upward } 0 15 {A26R:U -> A25R:U: adjacent_3p downward } 0 16 {A26R:U -> A27R:U: adjacent_5p } 0 17 {A27R:U -> A26R:U: adjacent_3p } 0 18 {A27R:U -> A28R:U: adjacent_5p } 0 19 {A28R:U -> A27R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:A 0 2 A8R:A 0 3 A9R:C 0 4 A23R:G 0 5 A24R:C 0 6 A25R:U 0 7 A26R:U 0 [Edges] 0 {A6R:A -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> A26R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A26R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:A -> A8R:A: adjacent_5p upward } 0 5 {A8R:A -> A7R:A: adjacent_3p downward } 0 6 {A7R:A -> A25R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A25R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A8R:A -> A9R:C: adjacent_5p upward } 0 9 {A9R:C -> A8R:A: adjacent_3p downward } 0 10 {A9R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A23R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A23R:G -> A24R:C: adjacent_5p } 0 13 {A24R:C -> A23R:G: adjacent_3p } 0 14 {A24R:C -> A25R:U: adjacent_5p } 0 15 {A25R:U -> A24R:C: adjacent_3p } 0 16 {A25R:U -> A26R:U: adjacent_5p upward } 0 17 {A26R:U -> A25R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:G 0 4 A17R:C 0 5 A18R:C 0 6 A19R:G 0 7 A20R:U 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A20R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A20R:U -> A2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p } 0 5 {A4R:G -> A3R:C: adjacent_3p } 0 6 {A3R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A18R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A19R:G: outward } 0 13 {A19R:G -> A4R:G: outward } 0 14 {A5R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A17R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A17R:C -> A18R:C: adjacent_5p upward } 0 17 {A18R:C -> A17R:C: adjacent_3p downward } 0 18 {A18R:C -> A19R:G: adjacent_5p } 0 19 {A19R:G -> A18R:C: adjacent_3p } 0 20 {A19R:G -> A20R:U: adjacent_5p upward } 0 21 {A20R:U -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:U 0 1 A3R:U 0 2 A4R:G 0 3 A5R:C 0 4 A19R:G 0 5 A20R:C 0 6 A21R:A 0 7 A22R:A 0 [Edges] 0 {A2R:U -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:U: adjacent_3p downward } 0 2 {A2R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A22R:A -> A2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A21R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A21R:A: outward } 0 13 {A21R:A -> A4R:G: outward } 0 14 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A19R:G -> A20R:C: adjacent_5p upward } 0 17 {A20R:C -> A19R:G: adjacent_3p downward } 0 18 {A20R:C -> A21R:A: adjacent_5p upward } 0 19 {A21R:A -> A20R:C: adjacent_3p downward } 0 20 {A21R:A -> A22R:A: adjacent_5p upward } 0 21 {A22R:A -> A21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:C 0 3 A6R:U 0 4 A18R:G 0 5 A19R:G 0 6 A20R:C 0 7 A21R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A21R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A21R:A: outward } 0 9 {A21R:A -> A4R:G: outward } 0 10 {A5R:C -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:C: adjacent_3p downward } 0 12 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A18R:G -> A6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A18R:G -> A19R:G: adjacent_5p upward } 0 17 {A19R:G -> A18R:G: adjacent_3p downward } 0 18 {A19R:G -> A20R:C: adjacent_5p upward } 0 19 {A20R:C -> A19R:G: adjacent_3p downward } 0 20 {A20R:C -> A21R:A: adjacent_5p upward } 0 21 {A21R:A -> A20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:C 0 2 A6R:U 0 3 A7R:G 0 4 A17R:C 0 5 A18R:G 0 6 A19R:G 0 7 A20R:C 0 [Edges] 0 {A4R:G -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:U -> A7R:G: adjacent_5p } 0 9 {A7R:G -> A6R:U: adjacent_3p } 0 10 {A6R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A18R:G -> A6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A7R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:G -> A18R:G: outward } 0 15 {A18R:G -> A7R:G: outward } 0 16 {A17R:C -> A18R:G: adjacent_5p } 0 17 {A18R:G -> A17R:C: adjacent_3p } 0 18 {A18R:G -> A19R:G: adjacent_5p upward } 0 19 {A19R:G -> A18R:G: adjacent_3p downward } 0 20 {A19R:G -> A20R:C: adjacent_5p upward } 0 21 {A20R:C -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:U 0 3 A5R:G 0 4 A12R:C 0 5 A13R:G 0 6 A14R:U 0 7 A15R:C 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A15R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A14R:U -> A3R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A4R:U -> A5R:G: adjacent_5p } 0 9 {A5R:G -> A4R:U: adjacent_3p } 0 10 {A4R:U -> A13R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A13R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A5R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A12R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A5R:G -> A13R:G: outward } 0 15 {A13R:G -> A5R:G: outward } 0 16 {A12R:C -> A13R:G: adjacent_5p upward } 0 17 {A13R:G -> A12R:C: adjacent_3p downward } 0 18 {A13R:G -> A14R:U: adjacent_5p upward } 0 19 {A14R:U -> A13R:G: adjacent_3p downward } 0 20 {A14R:U -> A15R:C: adjacent_5p upward } 0 21 {A15R:C -> A14R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:U 0 2 A5R:G 0 3 A6R:C 0 4 A11R:G 0 5 A12R:C 0 6 A13R:G 0 7 A14R:U 0 [Edges] 0 {A3R:G -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A14R:U -> A3R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A4R:U -> A5R:G: adjacent_5p } 0 5 {A5R:G -> A4R:U: adjacent_3p } 0 6 {A4R:U -> A13R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A13R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A5R:G -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A12R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A13R:G: outward } 0 13 {A13R:G -> A5R:G: outward } 0 14 {A6R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A11R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A11R:G -> A12R:C: adjacent_5p upward } 0 17 {A12R:C -> A11R:G: adjacent_3p downward } 0 18 {A12R:C -> A13R:G: adjacent_5p upward } 0 19 {A13R:G -> A12R:C: adjacent_3p downward } 0 20 {A13R:G -> A14R:U: adjacent_5p upward } 0 21 {A14R:U -> A13R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:G 0 2 A6R:C 0 3 A7R:G 0 4 A10R:A 0 5 A11R:G 0 6 A12R:C 0 7 A13R:G 0 [Edges] 0 {A4R:U -> A5R:G: adjacent_5p } 0 1 {A5R:G -> A4R:U: adjacent_3p } 0 2 {A4R:U -> A13R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A13R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A5R:G -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A12R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A13R:G: outward } 0 9 {A13R:G -> A5R:G: outward } 0 10 {A6R:C -> A7R:G: adjacent_5p upward } 0 11 {A7R:G -> A6R:C: adjacent_3p downward } 0 12 {A6R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A11R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:G -> A10R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 15 {A10R:A -> A7R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 16 {A7R:G -> A11R:G: outward } 0 17 {A11R:G -> A7R:G: outward } 0 18 {A10R:A -> A11R:G: adjacent_5p } 0 19 {A11R:G -> A10R:A: adjacent_3p } 0 20 {A11R:G -> A12R:C: adjacent_5p upward } 0 21 {A12R:C -> A11R:G: adjacent_3p downward } 0 22 {A12R:C -> A13R:G: adjacent_5p upward } 0 23 {A13R:G -> A12R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:C 0 3 A5R:C 0 4 A12R:G 0 5 A13R:G 0 6 A14R:G 0 7 A15R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A15R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:C: adjacent_5p } 0 5 {A4R:C -> A3R:C: adjacent_3p } 0 6 {A3R:C -> A14R:G: pairing antiparallel cis Ww/Ww } 0 7 {A14R:G -> A3R:C: pairing antiparallel cis Ww/Ww } 0 8 {A4R:C -> A5R:C: adjacent_5p } 0 9 {A5R:C -> A4R:C: adjacent_3p } 0 10 {A4R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A13R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A12R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A12R:G -> A13R:G: adjacent_5p upward } 0 15 {A13R:G -> A12R:G: adjacent_3p downward } 0 16 {A13R:G -> A14R:G: adjacent_5p upward } 0 17 {A14R:G -> A13R:G: adjacent_3p downward } 0 18 {A14R:G -> A15R:C: adjacent_5p upward } 0 19 {A15R:C -> A14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:C 0 2 A5R:C 0 3 A6R:U 0 4 A11R:A 0 5 A12R:G 0 6 A13R:G 0 7 A14R:G 0 [Edges] 0 {A3R:C -> A4R:C: adjacent_5p } 0 1 {A4R:C -> A3R:C: adjacent_3p } 0 2 {A3R:C -> A14R:G: pairing antiparallel cis Ww/Ww } 0 3 {A14R:G -> A3R:C: pairing antiparallel cis Ww/Ww } 0 4 {A4R:C -> A5R:C: adjacent_5p } 0 5 {A5R:C -> A4R:C: adjacent_3p } 0 6 {A4R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A13R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:C -> A6R:U: adjacent_5p } 0 9 {A6R:U -> A5R:C: adjacent_3p } 0 10 {A5R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A12R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:U -> A11R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {A11R:A -> A6R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {A11R:A -> A12R:G: adjacent_5p upward } 0 15 {A12R:G -> A11R:A: adjacent_3p downward } 0 16 {A12R:G -> A13R:G: adjacent_5p upward } 0 17 {A13R:G -> A12R:G: adjacent_3p downward } 0 18 {A13R:G -> A14R:G: adjacent_5p upward } 0 19 {A14R:G -> A13R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:U 0 2 A6R:G 0 3 A7R:A 0 4 A14R:U 0 5 A15R:C 0 6 A16R:A 0 7 A17R:G 0 [Edges] 0 {A4R:C -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:G: adjacent_5p } 0 5 {A6R:G -> A5R:U: adjacent_3p } 0 6 {A5R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A16R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:G -> A7R:A: adjacent_5p upward } 0 9 {A7R:A -> A6R:G: adjacent_3p downward } 0 10 {A6R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A15R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:G -> A16R:A: outward } 0 13 {A16R:A -> A6R:G: outward } 0 14 {A7R:A -> A14R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A14R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A14R:U -> A15R:C: adjacent_5p upward } 0 17 {A15R:C -> A14R:U: adjacent_3p downward } 0 18 {A15R:C -> A16R:A: adjacent_5p } 0 19 {A16R:A -> A15R:C: adjacent_3p } 0 20 {A16R:A -> A17R:G: adjacent_5p upward } 0 21 {A17R:G -> A16R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:G 0 2 A7R:A 0 3 A8R:G 0 4 A13R:C 0 5 A14R:U 0 6 A15R:C 0 7 A16R:A 0 [Edges] 0 {A5R:U -> A6R:G: adjacent_5p } 0 1 {A6R:G -> A5R:U: adjacent_3p } 0 2 {A5R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A16R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:G -> A7R:A: adjacent_5p upward } 0 5 {A7R:A -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A15R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> A16R:A: outward } 0 9 {A16R:A -> A6R:G: outward } 0 10 {A7R:A -> A8R:G: adjacent_5p upward } 0 11 {A8R:G -> A7R:A: adjacent_3p downward } 0 12 {A7R:A -> A14R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A14R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A8R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A13R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A13R:C -> A14R:U: adjacent_5p } 0 17 {A14R:U -> A13R:C: adjacent_3p } 0 18 {A14R:U -> A15R:C: adjacent_5p upward } 0 19 {A15R:C -> A14R:U: adjacent_3p downward } 0 20 {A15R:C -> A16R:A: adjacent_5p } 0 21 {A16R:A -> A15R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:G 0 3 A5R:C 0 4 A9R:G 0 5 A10R:C 0 6 A11R:A 0 7 A12R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A12R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A11R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A10R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A11R:A: outward } 0 13 {A11R:A -> A4R:G: outward } 0 14 {A5R:C -> A9R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 15 {A9R:G -> A5R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 16 {A9R:G -> A10R:C: adjacent_5p upward } 0 17 {A10R:C -> A9R:G: adjacent_3p downward } 0 18 {A10R:C -> A11R:A: adjacent_5p } 0 19 {A11R:A -> A10R:C: adjacent_3p } 0 20 {A11R:A -> A12R:C: adjacent_5p upward } 0 21 {A12R:C -> A11R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:U 0 3 A5R:C 0 4 A10R:G 0 5 A11R:A 0 6 A12R:A 0 7 A13R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A13R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A12R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:U -> A5R:C: adjacent_5p } 0 9 {A5R:C -> A4R:U: adjacent_3p } 0 10 {A4R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A11R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A10R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A10R:G -> A11R:A: adjacent_5p upward } 0 15 {A11R:A -> A10R:G: adjacent_3p downward } 0 16 {A11R:A -> A12R:A: adjacent_5p upward } 0 17 {A12R:A -> A11R:A: adjacent_3p downward } 0 18 {A12R:A -> A13R:C: adjacent_5p upward } 0 19 {A13R:C -> A12R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:U 0 2 A5R:C 0 3 A6R:A 0 4 A9R:A 0 5 A10R:G 0 6 A11R:A 0 7 A12R:A 0 [Edges] 0 {A3R:U -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A12R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:U -> A5R:C: adjacent_5p } 0 5 {A5R:C -> A4R:U: adjacent_3p } 0 6 {A4R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A11R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:C -> A6R:A: adjacent_5p upward } 0 9 {A6R:A -> A5R:C: adjacent_3p downward } 0 10 {A5R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A10R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:A -> A9R:A: pairing antiparallel trans 41 Ss/Hh } 0 13 {A9R:A -> A6R:A: pairing antiparallel trans 41 Hh/Ss } 0 14 {A9R:A -> A10R:G: adjacent_5p upward } 0 15 {A10R:G -> A9R:A: adjacent_3p downward } 0 16 {A10R:G -> A11R:A: adjacent_5p upward } 0 17 {A11R:A -> A10R:G: adjacent_3p downward } 0 18 {A11R:A -> A12R:A: adjacent_5p upward } 0 19 {A12R:A -> A11R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:U 0 3 A5R:C 0 4 A10R:G 0 5 A11R:A 0 6 A12R:A 0 7 A13R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A13R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A12R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:U -> A5R:C: adjacent_5p } 0 9 {A5R:C -> A4R:U: adjacent_3p } 0 10 {A4R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A11R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A10R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A10R:G -> A11R:A: adjacent_5p upward } 0 15 {A11R:A -> A10R:G: adjacent_3p downward } 0 16 {A11R:A -> A12R:A: adjacent_5p upward } 0 17 {A12R:A -> A11R:A: adjacent_3p downward } 0 18 {A12R:A -> A13R:C: adjacent_5p upward } 0 19 {A13R:C -> A12R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:G 0 2 A3R:A 0 3 A4R:C 0 4 A20R:G 0 5 A21R:U 0 6 A22R:C 0 7 A23R:C 0 [Edges] 0 {A1R:G -> A2R:G: adjacent_5p upward } 0 1 {A2R:G -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:G -> A3R:A: adjacent_5p upward } 0 5 {A3R:A -> A2R:G: adjacent_3p downward } 0 6 {A2R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:A -> A4R:C: adjacent_5p upward } 0 9 {A4R:C -> A3R:A: adjacent_3p downward } 0 10 {A3R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A21R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A4R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A20R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A20R:G -> A21R:U: adjacent_5p upward } 0 15 {A21R:U -> A20R:G: adjacent_3p downward } 0 16 {A21R:U -> A22R:C: adjacent_5p } 0 17 {A22R:C -> A21R:U: adjacent_3p } 0 18 {A22R:C -> A23R:C: adjacent_5p } 0 19 {A23R:C -> A22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:C 0 3 A5R:C 0 4 A19R:G 0 5 A20R:G 0 6 A21R:U 0 7 A22R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A21R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:C -> A5R:C: adjacent_5p } 0 9 {A5R:C -> A4R:C: adjacent_3p } 0 10 {A4R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A19R:G -> A20R:G: adjacent_5p upward } 0 15 {A20R:G -> A19R:G: adjacent_3p downward } 0 16 {A20R:G -> A21R:U: adjacent_5p upward } 0 17 {A21R:U -> A20R:G: adjacent_3p downward } 0 18 {A21R:U -> A22R:C: adjacent_5p } 0 19 {A22R:C -> A21R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:C 0 2 A5R:C 0 3 A6R:C 0 4 A18R:G 0 5 A19R:G 0 6 A20R:G 0 7 A21R:U 0 [Edges] 0 {A3R:A -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A21R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:C -> A5R:C: adjacent_5p } 0 5 {A5R:C -> A4R:C: adjacent_3p } 0 6 {A4R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:C -> A6R:C: adjacent_5p } 0 9 {A6R:C -> A5R:C: adjacent_3p } 0 10 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A18R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A18R:G -> A19R:G: adjacent_5p upward } 0 15 {A19R:G -> A18R:G: adjacent_3p downward } 0 16 {A19R:G -> A20R:G: adjacent_5p upward } 0 17 {A20R:G -> A19R:G: adjacent_3p downward } 0 18 {A20R:G -> A21R:U: adjacent_5p upward } 0 19 {A21R:U -> A20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:C 0 2 A6R:C 0 3 A7R:G 0 4 A17R:U 0 5 A18R:G 0 6 A19R:G 0 7 A20R:G 0 [Edges] 0 {A4R:C -> A5R:C: adjacent_5p } 0 1 {A5R:C -> A4R:C: adjacent_3p } 0 2 {A4R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:C: adjacent_5p } 0 5 {A6R:C -> A5R:C: adjacent_3p } 0 6 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:C -> A7R:G: adjacent_5p } 0 9 {A7R:G -> A6R:C: adjacent_3p } 0 10 {A6R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A18R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:G -> A17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A17R:U -> A7R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A7R:G -> A18R:G: outward } 0 15 {A18R:G -> A7R:G: outward } 0 16 {A17R:U -> A18R:G: adjacent_5p } 0 17 {A18R:G -> A17R:U: adjacent_3p } 0 18 {A18R:G -> A19R:G: adjacent_5p upward } 0 19 {A19R:G -> A18R:G: adjacent_3p downward } 0 20 {A19R:G -> A20R:G: adjacent_5p upward } 0 21 {A20R:G -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:C 0 2 A7R:G 0 3 A8R:G 0 4 A16R:C 0 5 A17R:U 0 6 A18R:G 0 7 A19R:G 0 [Edges] 0 {A5R:C -> A6R:C: adjacent_5p } 0 1 {A6R:C -> A5R:C: adjacent_3p } 0 2 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:C -> A7R:G: adjacent_5p } 0 5 {A7R:G -> A6R:C: adjacent_3p } 0 6 {A6R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A18R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:G -> A8R:G: adjacent_5p upward } 0 9 {A8R:G -> A7R:G: adjacent_3p downward } 0 10 {A7R:G -> A17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A17R:U -> A7R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A7R:G -> A18R:G: outward } 0 13 {A18R:G -> A7R:G: outward } 0 14 {A8R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A16R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A16R:C -> A17R:U: adjacent_5p upward } 0 17 {A17R:U -> A16R:C: adjacent_3p downward } 0 18 {A17R:U -> A18R:G: adjacent_5p } 0 19 {A18R:G -> A17R:U: adjacent_3p } 0 20 {A18R:G -> A19R:G: adjacent_5p upward } 0 21 {A19R:G -> A18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:G 0 2 A8R:G 0 3 A9R:G 0 4 A15R:C 0 5 A16R:C 0 6 A17R:U 0 7 A18R:G 0 [Edges] 0 {A6R:C -> A7R:G: adjacent_5p } 0 1 {A7R:G -> A6R:C: adjacent_3p } 0 2 {A6R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A18R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:G -> A8R:G: adjacent_5p upward } 0 5 {A8R:G -> A7R:G: adjacent_3p downward } 0 6 {A7R:G -> A17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A17R:U -> A7R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A7R:G -> A18R:G: outward } 0 9 {A18R:G -> A7R:G: outward } 0 10 {A8R:G -> A9R:G: adjacent_5p upward } 0 11 {A9R:G -> A8R:G: adjacent_3p downward } 0 12 {A8R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A16R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A9R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A15R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A15R:C -> A16R:C: adjacent_5p upward } 0 17 {A16R:C -> A15R:C: adjacent_3p downward } 0 18 {A16R:C -> A17R:U: adjacent_5p upward } 0 19 {A17R:U -> A16R:C: adjacent_3p downward } 0 20 {A17R:U -> A18R:G: adjacent_5p } 0 21 {A18R:G -> A17R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:G 0 2 A9R:G 0 3 A10R:C 0 4 A14R:A 0 5 A15R:C 0 6 A16R:C 0 7 A17R:U 0 [Edges] 0 {A7R:G -> A8R:G: adjacent_5p upward } 0 1 {A8R:G -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> A17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A17R:U -> A7R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A8R:G -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:G: adjacent_3p downward } 0 6 {A8R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A16R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> A10R:C: adjacent_5p upward } 0 9 {A10R:C -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A15R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:C -> A14R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 13 {A14R:A -> A10R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 14 {A14R:A -> A15R:C: adjacent_5p upward } 0 15 {A15R:C -> A14R:A: adjacent_3p downward } 0 16 {A15R:C -> A16R:C: adjacent_5p upward } 0 17 {A16R:C -> A15R:C: adjacent_3p downward } 0 18 {A16R:C -> A17R:U: adjacent_5p upward } 0 19 {A17R:U -> A16R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:G 0 2 A3R:C 0 3 A4R:G 0 4 A19R:C 0 5 A20R:G 0 6 A21R:C 0 7 A22R:C 0 [Edges] 0 {A1R:G -> A2R:G: adjacent_5p upward } 0 1 {A2R:G -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:G -> A3R:C: adjacent_5p upward } 0 5 {A3R:C -> A2R:G: adjacent_3p downward } 0 6 {A2R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:C -> A4R:G: adjacent_5p upward } 0 9 {A4R:G -> A3R:C: adjacent_3p downward } 0 10 {A3R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A4R:G -> A20R:G: outward } 0 15 {A20R:G -> A4R:G: outward } 0 16 {A19R:C -> A20R:G: adjacent_5p upward } 0 17 {A20R:G -> A19R:C: adjacent_3p downward } 0 18 {A20R:G -> A21R:C: adjacent_5p upward } 0 19 {A21R:C -> A20R:G: adjacent_3p downward } 0 20 {A21R:C -> A22R:C: adjacent_5p upward } 0 21 {A22R:C -> A21R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:U 0 4 A18R:G 0 5 A19R:C 0 6 A20R:G 0 7 A21R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A19R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A20R:G: outward } 0 13 {A20R:G -> A4R:G: outward } 0 14 {A5R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A18R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A18R:G -> A19R:C: adjacent_5p upward } 0 17 {A19R:C -> A18R:G: adjacent_3p downward } 0 18 {A19R:C -> A20R:G: adjacent_5p upward } 0 19 {A20R:G -> A19R:C: adjacent_3p downward } 0 20 {A20R:G -> A21R:C: adjacent_5p upward } 0 21 {A21R:C -> A20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:U 0 3 A6R:C 0 4 A17R:G 0 5 A18R:G 0 6 A19R:C 0 7 A20R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A20R:G: outward } 0 9 {A20R:G -> A4R:G: outward } 0 10 {A5R:U -> A6R:C: adjacent_5p } 0 11 {A6R:C -> A5R:U: adjacent_3p } 0 12 {A5R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A18R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A6R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A17R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A17R:G -> A18R:G: adjacent_5p upward } 0 17 {A18R:G -> A17R:G: adjacent_3p downward } 0 18 {A18R:G -> A19R:C: adjacent_5p upward } 0 19 {A19R:C -> A18R:G: adjacent_3p downward } 0 20 {A19R:C -> A20R:G: adjacent_5p upward } 0 21 {A20R:G -> A19R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:U 0 2 A6R:C 0 3 A7R:A 0 4 A16R:U 0 5 A17R:G 0 6 A18R:G 0 7 A19R:C 0 [Edges] 0 {A4R:G -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:C: adjacent_5p } 0 5 {A6R:C -> A5R:U: adjacent_3p } 0 6 {A5R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A18R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A6R:C -> A7R:A: adjacent_5p } 0 9 {A7R:A -> A6R:C: adjacent_3p } 0 10 {A6R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A16R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A7R:A -> A17R:G: outward } 0 15 {A17R:G -> A7R:A: outward } 0 16 {A16R:U -> A17R:G: adjacent_5p } 0 17 {A17R:G -> A16R:U: adjacent_3p } 0 18 {A17R:G -> A18R:G: adjacent_5p upward } 0 19 {A18R:G -> A17R:G: adjacent_3p downward } 0 20 {A18R:G -> A19R:C: adjacent_5p upward } 0 21 {A19R:C -> A18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:C 0 2 A7R:A 0 3 A8R:U 0 4 A15R:A 0 5 A16R:U 0 6 A17R:G 0 7 A18R:G 0 [Edges] 0 {A5R:U -> A6R:C: adjacent_5p } 0 1 {A6R:C -> A5R:U: adjacent_3p } 0 2 {A5R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A18R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A6R:C -> A7R:A: adjacent_5p } 0 5 {A7R:A -> A6R:C: adjacent_3p } 0 6 {A6R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:A -> A8R:U: adjacent_5p upward } 0 9 {A8R:U -> A7R:A: adjacent_3p downward } 0 10 {A7R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A16R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:A -> A17R:G: outward } 0 13 {A17R:G -> A7R:A: outward } 0 14 {A8R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A15R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A15R:A -> A16R:U: adjacent_5p upward } 0 17 {A16R:U -> A15R:A: adjacent_3p downward } 0 18 {A16R:U -> A17R:G: adjacent_5p } 0 19 {A17R:G -> A16R:U: adjacent_3p } 0 20 {A17R:G -> A18R:G: adjacent_5p upward } 0 21 {A18R:G -> A17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:A 0 2 A8R:U 0 3 A9R:G 0 4 A14R:C 0 5 A15R:A 0 6 A16R:U 0 7 A17R:G 0 [Edges] 0 {A6R:C -> A7R:A: adjacent_5p } 0 1 {A7R:A -> A6R:C: adjacent_3p } 0 2 {A6R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:A -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:A: adjacent_3p downward } 0 6 {A7R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A16R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:A -> A17R:G: outward } 0 9 {A17R:G -> A7R:A: outward } 0 10 {A8R:U -> A9R:G: adjacent_5p upward } 0 11 {A9R:G -> A8R:U: adjacent_3p downward } 0 12 {A8R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A15R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A9R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A14R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A9R:G -> A15R:A: outward } 0 17 {A15R:A -> A9R:G: outward } 0 18 {A14R:C -> A15R:A: adjacent_5p upward } 0 19 {A15R:A -> A14R:C: adjacent_3p downward } 0 20 {A15R:A -> A16R:U: adjacent_5p upward } 0 21 {A16R:U -> A15R:A: adjacent_3p downward } 0 22 {A16R:U -> A17R:G: adjacent_5p } 0 23 {A17R:G -> A16R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A7R:A 0 1 A8R:U 0 2 A9R:G 0 3 A10R:A 0 4 A13R:C 0 5 A14R:C 0 6 A15R:A 0 7 A16R:U 0 [Edges] 0 {A7R:A -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:A: adjacent_3p downward } 0 2 {A7R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A16R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A8R:U -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A15R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:G -> A10R:A: adjacent_5p upward } 0 9 {A10R:A -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A14R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:G -> A15R:A: outward } 0 13 {A15R:A -> A9R:G: outward } 0 14 {A10R:A -> A13R:C: pairing antiparallel trans one_hbond 72 Ss/Hw } 0 15 {A13R:C -> A10R:A: pairing antiparallel trans one_hbond 72 Hw/Ss } 0 16 {A13R:C -> A14R:C: adjacent_5p upward } 0 17 {A14R:C -> A13R:C: adjacent_3p downward } 0 18 {A14R:C -> A15R:A: adjacent_5p upward } 0 19 {A15R:A -> A14R:C: adjacent_3p downward } 0 20 {A15R:A -> A16R:U: adjacent_5p upward } 0 21 {A16R:U -> A15R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:G 0 2 A3R:C 0 3 A4R:G 0 4 A19R:C 0 5 A20R:G 0 6 A21R:C 0 7 A22R:C 0 [Edges] 0 {A1R:G -> A2R:G: adjacent_5p upward } 0 1 {A2R:G -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:G -> A3R:C: adjacent_5p upward } 0 5 {A3R:C -> A2R:G: adjacent_3p downward } 0 6 {A2R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:C -> A4R:G: adjacent_5p upward } 0 9 {A4R:G -> A3R:C: adjacent_3p downward } 0 10 {A3R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A4R:G -> A20R:G: outward } 0 15 {A20R:G -> A4R:G: outward } 0 16 {A19R:C -> A20R:G: adjacent_5p upward } 0 17 {A20R:G -> A19R:C: adjacent_3p downward } 0 18 {A20R:G -> A21R:C: adjacent_5p upward } 0 19 {A21R:C -> A20R:G: adjacent_3p downward } 0 20 {A21R:C -> A22R:C: adjacent_5p upward } 0 21 {A22R:C -> A21R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:U 0 4 A18R:G 0 5 A19R:C 0 6 A20R:G 0 7 A21R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A19R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A20R:G: outward } 0 13 {A20R:G -> A4R:G: outward } 0 14 {A5R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A18R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A18R:G -> A19R:C: adjacent_5p upward } 0 17 {A19R:C -> A18R:G: adjacent_3p downward } 0 18 {A19R:C -> A20R:G: adjacent_5p upward } 0 19 {A20R:G -> A19R:C: adjacent_3p downward } 0 20 {A20R:G -> A21R:C: adjacent_5p upward } 0 21 {A21R:C -> A20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:U 0 3 A6R:G 0 4 A17R:C 0 5 A18R:G 0 6 A19R:C 0 7 A20R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A20R:G: outward } 0 9 {A20R:G -> A4R:G: outward } 0 10 {A5R:U -> A6R:G: adjacent_5p } 0 11 {A6R:G -> A5R:U: adjacent_3p } 0 12 {A5R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A18R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A6R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A17R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A6R:G -> A18R:G: outward } 0 17 {A18R:G -> A6R:G: outward } 0 18 {A17R:C -> A18R:G: adjacent_5p } 0 19 {A18R:G -> A17R:C: adjacent_3p } 0 20 {A18R:G -> A19R:C: adjacent_5p upward } 0 21 {A19R:C -> A18R:G: adjacent_3p downward } 0 22 {A19R:C -> A20R:G: adjacent_5p upward } 0 23 {A20R:G -> A19R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:U 0 2 A6R:G 0 3 A7R:U 0 4 A16R:A 0 5 A17R:C 0 6 A18R:G 0 7 A19R:C 0 [Edges] 0 {A4R:G -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:G: adjacent_5p } 0 5 {A6R:G -> A5R:U: adjacent_3p } 0 6 {A5R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A18R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A6R:G -> A7R:U: adjacent_5p upward } 0 9 {A7R:U -> A6R:G: adjacent_3p downward } 0 10 {A6R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:G -> A18R:G: outward } 0 13 {A18R:G -> A6R:G: outward } 0 14 {A7R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A16R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A16R:A -> A17R:C: adjacent_5p upward } 0 17 {A17R:C -> A16R:A: adjacent_3p downward } 0 18 {A17R:C -> A18R:G: adjacent_5p } 0 19 {A18R:G -> A17R:C: adjacent_3p } 0 20 {A18R:G -> A19R:C: adjacent_5p upward } 0 21 {A19R:C -> A18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:G 0 2 A7R:U 0 3 A8R:U 0 4 A15R:A 0 5 A16R:A 0 6 A17R:C 0 7 A18R:G 0 [Edges] 0 {A5R:U -> A6R:G: adjacent_5p } 0 1 {A6R:G -> A5R:U: adjacent_3p } 0 2 {A5R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A18R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A6R:G -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> A18R:G: outward } 0 9 {A18R:G -> A6R:G: outward } 0 10 {A7R:U -> A8R:U: adjacent_5p upward } 0 11 {A8R:U -> A7R:U: adjacent_3p downward } 0 12 {A7R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A16R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A8R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A15R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A15R:A -> A16R:A: adjacent_5p upward } 0 17 {A16R:A -> A15R:A: adjacent_3p downward } 0 18 {A16R:A -> A17R:C: adjacent_5p upward } 0 19 {A17R:C -> A16R:A: adjacent_3p downward } 0 20 {A17R:C -> A18R:G: adjacent_5p } 0 21 {A18R:G -> A17R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:U 0 2 A8R:U 0 3 A9R:C 0 4 A14R:G 0 5 A15R:A 0 6 A16R:A 0 7 A17R:C 0 [Edges] 0 {A6R:G -> A7R:U: adjacent_5p upward } 0 1 {A7R:U -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:U -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:U: adjacent_3p downward } 0 6 {A7R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A16R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A8R:U -> A9R:C: adjacent_5p } 0 9 {A9R:C -> A8R:U: adjacent_3p } 0 10 {A8R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A15R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A14R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:G -> A15R:A: adjacent_5p upward } 0 15 {A15R:A -> A14R:G: adjacent_3p downward } 0 16 {A15R:A -> A16R:A: adjacent_5p upward } 0 17 {A16R:A -> A15R:A: adjacent_3p downward } 0 18 {A16R:A -> A17R:C: adjacent_5p upward } 0 19 {A17R:C -> A16R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:U 0 1 A8R:U 0 2 A9R:C 0 3 A10R:A 0 4 A13R:A 0 5 A14R:G 0 6 A15R:A 0 7 A16R:A 0 [Edges] 0 {A7R:U -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:U: adjacent_3p downward } 0 2 {A7R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A16R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A8R:U -> A9R:C: adjacent_5p } 0 5 {A9R:C -> A8R:U: adjacent_3p } 0 6 {A8R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A15R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:C -> A10R:A: adjacent_5p upward } 0 9 {A10R:A -> A9R:C: adjacent_3p downward } 0 10 {A9R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A14R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:A -> A13R:A: pairing antiparallel trans one_hbond 40 Ss/Wh } 0 13 {A13R:A -> A10R:A: pairing antiparallel trans one_hbond 40 Wh/Ss } 0 14 {A13R:A -> A14R:G: adjacent_5p upward } 0 15 {A14R:G -> A13R:A: adjacent_3p downward } 0 16 {A14R:G -> A15R:A: adjacent_5p upward } 0 17 {A15R:A -> A14R:G: adjacent_3p downward } 0 18 {A15R:A -> A16R:A: adjacent_5p upward } 0 19 {A16R:A -> A15R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:A 0 3 A5R:G 0 4 B21R:C 0 5 B22R:U 0 6 B23R:G 0 7 B24R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B24R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B24R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> B23R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B23R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> B22R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B22R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A4R:A -> B23R:G: outward } 0 13 {B23R:G -> A4R:A: outward } 0 14 {A5R:G -> B21R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B21R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B21R:C -> B22R:U: adjacent_5p upward } 0 17 {B22R:U -> B21R:C: adjacent_3p downward } 0 18 {B22R:U -> B23R:G: adjacent_5p upward } 0 19 {B23R:G -> B22R:U: adjacent_3p downward } 0 20 {B23R:G -> B24R:C: adjacent_5p upward } 0 21 {B24R:C -> B23R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:U 0 2 A9R:G 0 3 A10R:C 0 4 B17R:G 0 5 B18R:C 0 6 B19R:A 0 7 B20R:C 0 [Edges] 0 {A7R:G -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B20R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:U -> A9R:G: adjacent_5p } 0 5 {A9R:G -> A8R:U: adjacent_3p } 0 6 {A8R:U -> B19R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B19R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:G -> A10R:C: adjacent_5p upward } 0 9 {A10R:C -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B18R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:G -> B19R:A: outward } 0 13 {B19R:A -> A9R:G: outward } 0 14 {A10R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B17R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B17R:G -> B18R:C: adjacent_5p upward } 0 17 {B18R:C -> B17R:G: adjacent_3p downward } 0 18 {B18R:C -> B19R:A: adjacent_5p upward } 0 19 {B19R:A -> B18R:C: adjacent_3p downward } 0 20 {B19R:A -> B20R:C: adjacent_5p upward } 0 21 {B20R:C -> B19R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:G 0 2 A10R:C 0 3 A11R:C 0 4 B16R:G 0 5 B17R:G 0 6 B18R:C 0 7 B19R:A 0 [Edges] 0 {A8R:U -> A9R:G: adjacent_5p } 0 1 {A9R:G -> A8R:U: adjacent_3p } 0 2 {A8R:U -> B19R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B19R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:G -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B18R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> B19R:A: outward } 0 9 {B19R:A -> A9R:G: outward } 0 10 {A10R:C -> A11R:C: adjacent_5p upward } 0 11 {A11R:C -> A10R:C: adjacent_3p downward } 0 12 {A10R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B17R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A11R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B16R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B16R:G -> B17R:G: adjacent_5p upward } 0 17 {B17R:G -> B16R:G: adjacent_3p downward } 0 18 {B17R:G -> B18R:C: adjacent_5p upward } 0 19 {B18R:C -> B17R:G: adjacent_3p downward } 0 20 {B18R:C -> B19R:A: adjacent_5p upward } 0 21 {B19R:A -> B18R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:C 0 2 A11R:C 0 3 A12R:G 0 4 B15R:C 0 5 B16R:G 0 6 B17R:G 0 7 B18R:C 0 [Edges] 0 {A9R:G -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B18R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:C -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:C: adjacent_3p downward } 0 6 {A10R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B17R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:C -> A12R:G: adjacent_5p upward } 0 9 {A12R:G -> A11R:C: adjacent_3p downward } 0 10 {A11R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B16R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B15R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A12R:G -> B16R:G: outward } 0 15 {B16R:G -> A12R:G: outward } 0 16 {B15R:C -> B16R:G: adjacent_5p } 0 17 {B16R:G -> B15R:C: adjacent_3p } 0 18 {B16R:G -> B17R:G: adjacent_5p upward } 0 19 {B17R:G -> B16R:G: adjacent_3p downward } 0 20 {B17R:G -> B18R:C: adjacent_5p upward } 0 21 {B18R:C -> B17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:C 0 2 4R:G 0 3 5R:C 0 4 15R:G 0 5 16R:C 0 6 17R:G 0 7 18R:C 0 [Edges] 0 {2R:G -> 3R:C: adjacent_5p upward } 0 1 {3R:C -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {18R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:C -> 4R:G: adjacent_5p upward } 0 5 {4R:G -> 3R:C: adjacent_3p downward } 0 6 {3R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {17R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:G -> 5R:C: adjacent_5p upward } 0 9 {5R:C -> 4R:G: adjacent_3p downward } 0 10 {4R:G -> 16R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {16R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {5R:C -> 15R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {15R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {15R:G -> 16R:C: adjacent_5p upward } 0 15 {16R:C -> 15R:G: adjacent_3p downward } 0 16 {16R:C -> 17R:G: adjacent_5p upward } 0 17 {17R:G -> 16R:C: adjacent_3p downward } 0 18 {17R:G -> 18R:C: adjacent_5p } 0 19 {18R:C -> 17R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 9R:G 0 1 10R:G 0 2 11R:G 0 3 12R:C 0 4 28R:G 0 5 29R:C 0 6 30R:C 0 7 31R:C 0 [Edges] 0 {9R:G -> 10R:G: adjacent_5p upward } 0 1 {10R:G -> 9R:G: adjacent_3p downward } 0 2 {9R:G -> 31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {31R:C -> 9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {10R:G -> 11R:G: adjacent_5p upward } 0 5 {11R:G -> 10R:G: adjacent_3p downward } 0 6 {10R:G -> 30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {30R:C -> 10R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {11R:G -> 12R:C: adjacent_5p upward } 0 9 {12R:C -> 11R:G: adjacent_3p downward } 0 10 {11R:G -> 29R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {29R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {12R:C -> 28R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {28R:G -> 12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {28R:G -> 29R:C: adjacent_5p upward } 0 15 {29R:C -> 28R:G: adjacent_3p downward } 0 16 {29R:C -> 30R:C: adjacent_5p } 0 17 {30R:C -> 29R:C: adjacent_3p } 0 18 {30R:C -> 31R:C: adjacent_5p upward } 0 19 {31R:C -> 30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:C 0 3 A5R:A 0 4 B6R:C 0 5 B7R:A 0 6 B8R:G 0 7 B9R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B9R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B9R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> B8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B8R:G -> A3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A4R:C -> A5R:A: adjacent_5p } 0 9 {A5R:A -> A4R:C: adjacent_3p } 0 10 {A4R:C -> B7R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 11 {B7R:A -> A4R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 12 {A5R:A -> B6R:C: pairing antiparallel trans XXV Hh/Ww } 0 13 {B6R:C -> A5R:A: pairing antiparallel trans XXV Ww/Hh } 0 14 {A5R:A -> B7R:A: outward } 0 15 {B7R:A -> A5R:A: outward } 0 16 {B6R:C -> B7R:A: adjacent_5p } 0 17 {B7R:A -> B6R:C: adjacent_3p } 0 18 {B7R:A -> B8R:G: adjacent_5p upward } 0 19 {B8R:G -> B7R:A: adjacent_3p downward } 0 20 {B8R:G -> B9R:C: adjacent_5p upward } 0 21 {B9R:C -> B8R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:C 0 2 A5R:A 0 3 A6R:C 0 4 B5R:A 0 5 B6R:C 0 6 B7R:A 0 7 B8R:G 0 [Edges] 0 {A3R:U -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> B8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B8R:G -> A3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A4R:C -> A5R:A: adjacent_5p } 0 5 {A5R:A -> A4R:C: adjacent_3p } 0 6 {A4R:C -> B7R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 7 {B7R:A -> A4R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 8 {A5R:A -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> B6R:C: pairing antiparallel trans XXV Hh/Ww } 0 11 {B6R:C -> A5R:A: pairing antiparallel trans XXV Ww/Hh } 0 12 {A5R:A -> B7R:A: outward } 0 13 {B7R:A -> A5R:A: outward } 0 14 {A6R:C -> B5R:A: pairing antiparallel trans XXV Ww/Hh } 0 15 {B5R:A -> A6R:C: pairing antiparallel trans XXV Hh/Ww } 0 16 {B5R:A -> B6R:C: adjacent_5p upward } 0 17 {B6R:C -> B5R:A: adjacent_3p downward } 0 18 {B6R:C -> B7R:A: adjacent_5p } 0 19 {B7R:A -> B6R:C: adjacent_3p } 0 20 {B7R:A -> B8R:G: adjacent_5p upward } 0 21 {B8R:G -> B7R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:A 0 2 A6R:C 0 3 A7R:A 0 4 B4R:C 0 5 B5R:A 0 6 B6R:C 0 7 B7R:A 0 [Edges] 0 {A4R:C -> A5R:A: adjacent_5p } 0 1 {A5R:A -> A4R:C: adjacent_3p } 0 2 {A4R:C -> B7R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 3 {B7R:A -> A4R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 4 {A5R:A -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> B6R:C: pairing antiparallel trans XXV Hh/Ww } 0 7 {B6R:C -> A5R:A: pairing antiparallel trans XXV Ww/Hh } 0 8 {A5R:A -> B7R:A: outward } 0 9 {B7R:A -> A5R:A: outward } 0 10 {A6R:C -> A7R:A: adjacent_5p } 0 11 {A7R:A -> A6R:C: adjacent_3p } 0 12 {A6R:C -> B5R:A: pairing antiparallel trans XXV Ww/Hh } 0 13 {B5R:A -> A6R:C: pairing antiparallel trans XXV Hh/Ww } 0 14 {A7R:A -> B4R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 15 {B4R:C -> A7R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 16 {A7R:A -> B5R:A: outward } 0 17 {B5R:A -> A7R:A: outward } 0 18 {B4R:C -> B5R:A: adjacent_5p } 0 19 {B5R:A -> B4R:C: adjacent_3p } 0 20 {B5R:A -> B6R:C: adjacent_5p upward } 0 21 {B6R:C -> B5R:A: adjacent_3p downward } 0 22 {B6R:C -> B7R:A: adjacent_5p } 0 23 {B7R:A -> B6R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:C 0 2 A7R:A 0 3 A8R:G 0 4 B3R:U 0 5 B4R:C 0 6 B5R:A 0 7 B6R:C 0 [Edges] 0 {A5R:A -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> B6R:C: pairing antiparallel trans XXV Hh/Ww } 0 3 {B6R:C -> A5R:A: pairing antiparallel trans XXV Ww/Hh } 0 4 {A6R:C -> A7R:A: adjacent_5p } 0 5 {A7R:A -> A6R:C: adjacent_3p } 0 6 {A6R:C -> B5R:A: pairing antiparallel trans XXV Ww/Hh } 0 7 {B5R:A -> A6R:C: pairing antiparallel trans XXV Hh/Ww } 0 8 {A7R:A -> A8R:G: adjacent_5p upward } 0 9 {A8R:G -> A7R:A: adjacent_3p downward } 0 10 {A7R:A -> B4R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 11 {B4R:C -> A7R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 12 {A7R:A -> B5R:A: outward } 0 13 {B5R:A -> A7R:A: outward } 0 14 {A8R:G -> B3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {B3R:U -> A8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {B3R:U -> B4R:C: adjacent_5p upward } 0 17 {B4R:C -> B3R:U: adjacent_3p downward } 0 18 {B4R:C -> B5R:A: adjacent_5p } 0 19 {B5R:A -> B4R:C: adjacent_3p } 0 20 {B5R:A -> B6R:C: adjacent_5p upward } 0 21 {B6R:C -> B5R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:A 0 2 A8R:G 0 3 A9R:C 0 4 B2R:G 0 5 B3R:U 0 6 B4R:C 0 7 B5R:A 0 [Edges] 0 {A6R:C -> A7R:A: adjacent_5p } 0 1 {A7R:A -> A6R:C: adjacent_3p } 0 2 {A6R:C -> B5R:A: pairing antiparallel trans XXV Ww/Hh } 0 3 {B5R:A -> A6R:C: pairing antiparallel trans XXV Hh/Ww } 0 4 {A7R:A -> A8R:G: adjacent_5p upward } 0 5 {A8R:G -> A7R:A: adjacent_3p downward } 0 6 {A7R:A -> B4R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 7 {B4R:C -> A7R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 8 {A7R:A -> B5R:A: outward } 0 9 {B5R:A -> A7R:A: outward } 0 10 {A8R:G -> A9R:C: adjacent_5p upward } 0 11 {A9R:C -> A8R:G: adjacent_3p downward } 0 12 {A8R:G -> B3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B3R:U -> A8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A9R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B2R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B2R:G -> B3R:U: adjacent_5p upward } 0 17 {B3R:U -> B2R:G: adjacent_3p downward } 0 18 {B3R:U -> B4R:C: adjacent_5p upward } 0 19 {B4R:C -> B3R:U: adjacent_3p downward } 0 20 {B4R:C -> B5R:A: adjacent_5p } 0 21 {B5R:A -> B4R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:G 0 4 A49R:C 0 5 A50R:C 0 6 A51R:G 0 7 A52R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A52R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A52R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p } 0 5 {A4R:G -> A3R:C: adjacent_3p } 0 6 {A3R:C -> A51R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A51R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A50R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A50R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A51R:G: outward } 0 13 {A51R:G -> A4R:G: outward } 0 14 {A5R:G -> A49R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A49R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A49R:C -> A50R:C: adjacent_5p } 0 17 {A50R:C -> A49R:C: adjacent_3p } 0 18 {A50R:C -> A51R:G: adjacent_5p upward } 0 19 {A51R:G -> A50R:C: adjacent_3p downward } 0 20 {A51R:G -> A52R:C: adjacent_5p upward } 0 21 {A52R:C -> A51R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:A 0 1 A8R:C 0 2 A9R:C 0 3 A10R:G 0 4 A21R:C 0 5 A22R:G 0 6 A23R:G 0 7 A24R:A 0 [Edges] 0 {A7R:A -> A8R:C: adjacent_5p upward } 0 1 {A8R:C -> A7R:A: adjacent_3p downward } 0 2 {A7R:A -> A24R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 3 {A24R:A -> A7R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 4 {A8R:C -> A9R:C: adjacent_5p } 0 5 {A9R:C -> A8R:C: adjacent_3p } 0 6 {A8R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A23R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:C -> A10R:G: adjacent_5p } 0 9 {A10R:G -> A9R:C: adjacent_3p } 0 10 {A9R:C -> A22R:G: pairing antiparallel cis 128 Ww/Bs } 0 11 {A22R:G -> A9R:C: pairing antiparallel cis 128 Bs/Ww } 0 12 {A10R:G -> A21R:C: pairing antiparallel cis one_hbond Wh/Bh } 0 13 {A21R:C -> A10R:G: pairing antiparallel cis one_hbond Bh/Wh } 0 14 {A21R:C -> A22R:G: adjacent_5p } 0 15 {A22R:G -> A21R:C: adjacent_3p } 0 16 {A22R:G -> A23R:G: adjacent_5p upward } 0 17 {A23R:G -> A22R:G: adjacent_3p downward } 0 18 {A23R:G -> A24R:A: adjacent_5p upward } 0 19 {A24R:A -> A23R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A39R:G 0 1 A40R:G 0 2 A41R:G 0 3 A42R:C 0 4 A45R:G 0 5 A46R:C 0 6 A47R:C 0 7 A48R:C 0 [Edges] 0 {A39R:G -> A40R:G: adjacent_5p upward } 0 1 {A40R:G -> A39R:G: adjacent_3p downward } 0 2 {A39R:G -> A48R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A48R:C -> A39R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A40R:G -> A41R:G: adjacent_5p upward } 0 5 {A41R:G -> A40R:G: adjacent_3p downward } 0 6 {A40R:G -> A47R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A47R:C -> A40R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A40R:G -> A48R:C: outward } 0 9 {A48R:C -> A40R:G: outward } 0 10 {A41R:G -> A42R:C: adjacent_5p upward } 0 11 {A42R:C -> A41R:G: adjacent_3p downward } 0 12 {A41R:G -> A46R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A46R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A42R:C -> A45R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A45R:G -> A42R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A45R:G -> A46R:C: adjacent_5p upward } 0 17 {A46R:C -> A45R:G: adjacent_3p downward } 0 18 {A46R:C -> A47R:C: adjacent_5p } 0 19 {A47R:C -> A46R:C: adjacent_3p } 0 20 {A47R:C -> A48R:C: adjacent_5p } 0 21 {A48R:C -> A47R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:A 0 1 A3R:G 0 2 A4R:C 0 3 A5R:C 0 4 A12R:G 0 5 A13R:G 0 6 A14R:C 0 7 A15R:U 0 [Edges] 0 {A2R:A -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:A: adjacent_3p downward } 0 2 {A2R:A -> A15R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A15R:U -> A2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:C: adjacent_5p } 0 5 {A4R:C -> A3R:G: adjacent_3p } 0 6 {A3R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A14R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> A12R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {A12R:G -> A4R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {A5R:C -> A12R:G: pairing antiparallel cis Ww/Ww } 0 13 {A12R:G -> A5R:C: pairing antiparallel cis Ww/Ww } 0 14 {A12R:G -> A13R:G: adjacent_5p upward } 0 15 {A13R:G -> A12R:G: adjacent_3p downward } 0 16 {A13R:G -> A14R:C: adjacent_5p upward } 0 17 {A14R:C -> A13R:G: adjacent_3p downward } 0 18 {A14R:C -> A15R:U: adjacent_5p } 0 19 {A15R:U -> A14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 . . . 3 . . 9 . 12 . . . 4 . . 11 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B18R:C 0 1 B19R:U 0 2 B20R:G 0 3 B21R:U 0 4 B28R:A 0 5 B29R:C 0 6 B30R:A 0 7 B31R:G 0 [Edges] 0 {B18R:C -> B19R:U: adjacent_5p } 0 1 {B19R:U -> B18R:C: adjacent_3p } 0 2 {B18R:C -> B31R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {B31R:G -> B18R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {B19R:U -> B20R:G: adjacent_5p } 0 5 {B20R:G -> B19R:U: adjacent_3p } 0 6 {B19R:U -> B30R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B30R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B20R:G -> B21R:U: adjacent_5p upward } 0 9 {B21R:U -> B20R:G: adjacent_3p downward } 0 10 {B20R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B29R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B21R:U -> B28R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B28R:A -> B21R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B28R:A -> B29R:C: adjacent_5p upward } 0 15 {B29R:C -> B28R:A: adjacent_3p downward } 0 16 {B29R:C -> B30R:A: adjacent_5p upward } 0 17 {B30R:A -> B29R:C: adjacent_3p downward } 0 18 {B30R:A -> B31R:G: adjacent_5p } 0 19 {B31R:G -> B30R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:A 0 3 A5R:G 0 4 A20R:C 0 5 A21R:A 0 6 A22R:C 0 7 A23R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p } 0 1 {A3R:A -> A2R:G: adjacent_3p } 0 2 {A2R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:A: adjacent_5p } 0 5 {A4R:A -> A3R:A: adjacent_3p } 0 6 {A4R:A -> A5R:G: adjacent_5p upward } 0 7 {A5R:G -> A4R:A: adjacent_3p downward } 0 8 {A4R:A -> A21R:A: pairing antiparallel trans 41 Hh/Ss } 0 9 {A21R:A -> A4R:A: pairing antiparallel trans 41 Ss/Hh } 0 10 {A5R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A21R:A: outward } 0 13 {A21R:A -> A5R:G: outward } 0 14 {A20R:C -> A21R:A: adjacent_5p upward } 0 15 {A21R:A -> A20R:C: adjacent_3p downward } 0 16 {A21R:A -> A22R:C: adjacent_5p } 0 17 {A22R:C -> A21R:A: adjacent_3p } 0 18 {A22R:C -> A23R:C: adjacent_5p upward } 0 19 {A23R:C -> A22R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 12 . . 4 . . . 11 . 14 . . 5 . . 9 13 15 . 16 . 6 . . . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:G 0 2 A6R:G 0 3 A7R:C 0 4 A18R:G 0 5 A19R:C 0 6 A20R:C 0 7 A21R:A 0 [Edges] 0 {A4R:A -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> A21R:A: pairing antiparallel trans 41 Hh/Ss } 0 3 {A21R:A -> A4R:A: pairing antiparallel trans 41 Ss/Hh } 0 4 {A5R:G -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A21R:A: outward } 0 9 {A21R:A -> A5R:G: outward } 0 10 {A6R:G -> A7R:C: adjacent_5p upward } 0 11 {A7R:C -> A6R:G: adjacent_3p downward } 0 12 {A6R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A18R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A18R:G -> A19R:C: adjacent_5p upward } 0 17 {A19R:C -> A18R:G: adjacent_3p downward } 0 18 {A19R:C -> A20R:C: adjacent_5p upward } 0 19 {A20R:C -> A19R:C: adjacent_3p downward } 0 20 {A20R:C -> A21R:A: adjacent_5p upward } 0 21 {A21R:A -> A20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:G 0 2 A7R:C 0 3 A8R:C 0 4 A17R:G 0 5 A18R:G 0 6 A19R:C 0 7 A20R:C 0 [Edges] 0 {A5R:G -> A6R:G: adjacent_5p upward } 0 1 {A6R:G -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:G -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:C -> A8R:C: adjacent_5p upward } 0 9 {A8R:C -> A7R:C: adjacent_3p downward } 0 10 {A7R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A18R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A17R:G -> A18R:G: adjacent_5p upward } 0 15 {A18R:G -> A17R:G: adjacent_3p downward } 0 16 {A18R:G -> A19R:C: adjacent_5p upward } 0 17 {A19R:C -> A18R:G: adjacent_3p downward } 0 18 {A19R:C -> A20R:C: adjacent_5p upward } 0 19 {A20R:C -> A19R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:C 0 2 A8R:C 0 3 A9R:C 0 4 A16R:G 0 5 A17R:G 0 6 A18R:G 0 7 A19R:C 0 [Edges] 0 {A6R:G -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:C -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:C: adjacent_3p downward } 0 6 {A7R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A18R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:C -> A9R:C: adjacent_5p upward } 0 9 {A9R:C -> A8R:C: adjacent_3p downward } 0 10 {A8R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A16R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A16R:G -> A17R:G: adjacent_5p upward } 0 15 {A17R:G -> A16R:G: adjacent_3p downward } 0 16 {A17R:G -> A18R:G: adjacent_5p upward } 0 17 {A18R:G -> A17R:G: adjacent_3p downward } 0 18 {A18R:G -> A19R:C: adjacent_5p upward } 0 19 {A19R:C -> A18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:C 0 2 A9R:C 0 3 A10R:U 0 4 A15R:A 0 5 A16R:G 0 6 A17R:G 0 7 A18R:G 0 [Edges] 0 {A7R:C -> A8R:C: adjacent_5p upward } 0 1 {A8R:C -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A18R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:C -> A9R:C: adjacent_5p upward } 0 5 {A9R:C -> A8R:C: adjacent_3p downward } 0 6 {A8R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:C -> A10R:U: adjacent_5p upward } 0 9 {A10R:U -> A9R:C: adjacent_3p downward } 0 10 {A9R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A16R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A15R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A15R:A -> A16R:G: adjacent_5p upward } 0 15 {A16R:G -> A15R:A: adjacent_3p downward } 0 16 {A16R:G -> A17R:G: adjacent_5p upward } 0 17 {A17R:G -> A16R:G: adjacent_3p downward } 0 18 {A17R:G -> A18R:G: adjacent_5p upward } 0 19 {A18R:G -> A17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:U 0 1 A3R:G 0 2 A4R:U 0 3 A5R:G 0 4 A13R:C 0 5 A14R:A 0 6 A15R:C 0 7 A16R:A 0 [Edges] 0 {A2R:U -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:U: adjacent_3p downward } 0 2 {A2R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A16R:A -> A2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A15R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:U -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:U: adjacent_3p downward } 0 10 {A4R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A14R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A13R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A13R:C -> A14R:A: adjacent_5p } 0 15 {A14R:A -> A13R:C: adjacent_3p } 0 16 {A14R:A -> A15R:C: adjacent_5p upward } 0 17 {A15R:C -> A14R:A: adjacent_3p downward } 0 18 {A15R:C -> A16R:A: adjacent_5p upward } 0 19 {A16R:A -> A15R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:C 0 4 A26R:C 0 5 A27R:C 0 6 A28R:G 0 7 A29R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A29R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A28R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A27R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A28R:G: outward } 0 13 {A28R:G -> A4R:G: outward } 0 14 {A5R:C -> A26R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 15 {A26R:C -> A5R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 16 {A26R:C -> A27R:C: adjacent_5p upward } 0 17 {A27R:C -> A26R:C: adjacent_3p downward } 0 18 {A27R:C -> A28R:G: adjacent_5p } 0 19 {A28R:G -> A27R:C: adjacent_3p } 0 20 {A28R:G -> A29R:C: adjacent_5p upward } 0 21 {A29R:C -> A28R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:C 0 3 A6R:U 0 4 A25R:A 0 5 A26R:C 0 6 A27R:C 0 7 A28R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A28R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A27R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A28R:G: outward } 0 9 {A28R:G -> A4R:G: outward } 0 10 {A5R:C -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:C: adjacent_3p downward } 0 12 {A5R:C -> A26R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 13 {A26R:C -> A5R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 14 {A6R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A25R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A25R:A -> A26R:C: adjacent_5p upward } 0 17 {A26R:C -> A25R:A: adjacent_3p downward } 0 18 {A26R:C -> A27R:C: adjacent_5p upward } 0 19 {A27R:C -> A26R:C: adjacent_3p downward } 0 20 {A27R:C -> A28R:G: adjacent_5p } 0 21 {A28R:G -> A27R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:C 0 2 A6R:U 0 3 A7R:C 0 4 A24R:G 0 5 A25R:A 0 6 A26R:C 0 7 A27R:C 0 [Edges] 0 {A4R:G -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> A26R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 7 {A26R:C -> A5R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 8 {A6R:U -> A7R:C: adjacent_5p upward } 0 9 {A7R:C -> A6R:U: adjacent_3p downward } 0 10 {A6R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A25R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A24R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A24R:G -> A25R:A: adjacent_5p upward } 0 15 {A25R:A -> A24R:G: adjacent_3p downward } 0 16 {A25R:A -> A26R:C: adjacent_5p upward } 0 17 {A26R:C -> A25R:A: adjacent_3p downward } 0 18 {A26R:C -> A27R:C: adjacent_5p upward } 0 19 {A27R:C -> A26R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:G 0 1 A12R:C 0 2 A13R:U 0 3 A14R:C 0 4 A19R:G 0 5 A20R:A 0 6 A21R:G 0 7 A22R:A 0 [Edges] 0 {A11R:G -> A12R:C: adjacent_5p upward } 0 1 {A12R:C -> A11R:G: adjacent_3p downward } 0 2 {A11R:G -> A22R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A22R:A -> A11R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A12R:C -> A13R:U: adjacent_5p upward } 0 5 {A13R:U -> A12R:C: adjacent_3p downward } 0 6 {A12R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:U -> A14R:C: adjacent_5p upward } 0 9 {A14R:C -> A13R:U: adjacent_3p downward } 0 10 {A13R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A20R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A14R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A19R:G -> A20R:A: adjacent_5p upward } 0 15 {A20R:A -> A19R:G: adjacent_3p downward } 0 16 {A20R:A -> A21R:G: adjacent_5p upward } 0 17 {A21R:G -> A20R:A: adjacent_3p downward } 0 18 {A21R:G -> A22R:A: adjacent_5p upward } 0 19 {A22R:A -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A12R:C 0 1 A13R:U 0 2 A14R:C 0 3 A15R:U 0 4 A18R:G 0 5 A19R:G 0 6 A20R:A 0 7 A21R:G 0 [Edges] 0 {A12R:C -> A13R:U: adjacent_5p upward } 0 1 {A13R:U -> A12R:C: adjacent_3p downward } 0 2 {A12R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:U -> A14R:C: adjacent_5p upward } 0 5 {A14R:C -> A13R:U: adjacent_3p downward } 0 6 {A13R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A20R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A14R:C -> A15R:U: adjacent_5p upward } 0 9 {A15R:U -> A14R:C: adjacent_3p downward } 0 10 {A14R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A19R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A15R:U -> A18R:G: pairing parallel trans one_hbond Bs/Ww } 0 13 {A18R:G -> A15R:U: pairing parallel trans one_hbond Ww/Bs } 0 14 {A18R:G -> A19R:G: adjacent_5p outward } 0 15 {A19R:G -> A18R:G: adjacent_3p outward } 0 16 {A19R:G -> A20R:A: adjacent_5p upward } 0 17 {A20R:A -> A19R:G: adjacent_3p downward } 0 18 {A20R:A -> A21R:G: adjacent_5p upward } 0 19 {A21R:G -> A20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:C 0 2 4R:G 0 3 5R:C 0 4 15R:G 0 5 16R:C 0 6 17R:G 0 7 18R:C 0 [Edges] 0 {2R:G -> 3R:C: adjacent_5p upward } 0 1 {3R:C -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {18R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:C -> 4R:G: adjacent_5p upward } 0 5 {4R:G -> 3R:C: adjacent_3p downward } 0 6 {3R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {17R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:G -> 5R:C: adjacent_5p upward } 0 9 {5R:C -> 4R:G: adjacent_3p downward } 0 10 {4R:G -> 16R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {16R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {4R:G -> 17R:G: outward } 0 13 {17R:G -> 4R:G: outward } 0 14 {5R:C -> 15R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {15R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {15R:G -> 16R:C: adjacent_5p upward } 0 17 {16R:C -> 15R:G: adjacent_3p downward } 0 18 {16R:C -> 17R:G: adjacent_5p } 0 19 {17R:G -> 16R:C: adjacent_3p } 0 20 {17R:G -> 18R:C: adjacent_5p upward } 0 21 {18R:C -> 17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 9R:G 0 1 10R:G 0 2 11R:G 0 3 12R:C 0 4 28R:G 0 5 29R:C 0 6 30R:C 0 7 31R:C 0 [Edges] 0 {9R:G -> 10R:G: adjacent_5p upward } 0 1 {10R:G -> 9R:G: adjacent_3p downward } 0 2 {9R:G -> 31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {31R:C -> 9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {10R:G -> 11R:G: adjacent_5p upward } 0 5 {11R:G -> 10R:G: adjacent_3p downward } 0 6 {10R:G -> 30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {30R:C -> 10R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {11R:G -> 12R:C: adjacent_5p upward } 0 9 {12R:C -> 11R:G: adjacent_3p downward } 0 10 {11R:G -> 29R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {29R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {12R:C -> 28R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {28R:G -> 12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {28R:G -> 29R:C: adjacent_5p upward } 0 15 {29R:C -> 28R:G: adjacent_3p downward } 0 16 {29R:C -> 30R:C: adjacent_5p upward } 0 17 {30R:C -> 29R:C: adjacent_3p downward } 0 18 {30R:C -> 31R:C: adjacent_5p upward } 0 19 {31R:C -> 30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 10R:G 0 1 11R:G 0 2 12R:C 0 3 13R:U 0 4 27R:G 0 5 28R:G 0 6 29R:C 0 7 30R:C 0 [Edges] 0 {10R:G -> 11R:G: adjacent_5p upward } 0 1 {11R:G -> 10R:G: adjacent_3p downward } 0 2 {10R:G -> 30R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {30R:C -> 10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {11R:G -> 12R:C: adjacent_5p upward } 0 5 {12R:C -> 11R:G: adjacent_3p downward } 0 6 {11R:G -> 29R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {29R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {12R:C -> 13R:U: adjacent_5p upward } 0 9 {13R:U -> 12R:C: adjacent_3p downward } 0 10 {12R:C -> 28R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {28R:G -> 12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {13R:U -> 27R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {27R:G -> 13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {27R:G -> 28R:G: adjacent_5p upward } 0 15 {28R:G -> 27R:G: adjacent_3p downward } 0 16 {28R:G -> 29R:C: adjacent_5p upward } 0 17 {29R:C -> 28R:G: adjacent_3p downward } 0 18 {29R:C -> 30R:C: adjacent_5p upward } 0 19 {30R:C -> 29R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:C 0 2 A6R:C 0 3 A7R:G 0 4 A16R:C 0 5 A17R:G 0 6 A18R:G 0 7 A19R:A 0 [Edges] 0 {A4R:U -> A5R:C: adjacent_5p } 0 1 {A5R:C -> A4R:U: adjacent_3p } 0 2 {A4R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A19R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:C -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A18R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:C -> A7R:G: adjacent_5p } 0 9 {A7R:G -> A6R:C: adjacent_3p } 0 10 {A6R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A16R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:G -> A17R:G: outward } 0 15 {A17R:G -> A7R:G: outward } 0 16 {A16R:C -> A17R:G: adjacent_5p } 0 17 {A17R:G -> A16R:C: adjacent_3p } 0 18 {A17R:G -> A18R:G: adjacent_5p upward } 0 19 {A18R:G -> A17R:G: adjacent_3p downward } 0 20 {A18R:G -> A19R:A: adjacent_5p upward } 0 21 {A19R:A -> A18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:C 0 2 A7R:G 0 3 A8R:G 0 4 A15R:C 0 5 A16R:C 0 6 A17R:G 0 7 A18R:G 0 [Edges] 0 {A5R:C -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:C: adjacent_3p downward } 0 2 {A5R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A18R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:C -> A7R:G: adjacent_5p } 0 5 {A7R:G -> A6R:C: adjacent_3p } 0 6 {A6R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:G -> A8R:G: adjacent_5p upward } 0 9 {A8R:G -> A7R:G: adjacent_3p downward } 0 10 {A7R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A16R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:G -> A17R:G: outward } 0 13 {A17R:G -> A7R:G: outward } 0 14 {A8R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A15R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A15R:C -> A16R:C: adjacent_5p } 0 17 {A16R:C -> A15R:C: adjacent_3p } 0 18 {A16R:C -> A17R:G: adjacent_5p } 0 19 {A17R:G -> A16R:C: adjacent_3p } 0 20 {A17R:G -> A18R:G: adjacent_5p upward } 0 21 {A18R:G -> A17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A13R:C 0 1 A14R:U 0 2 A15R:C 0 3 A16R:C 0 4 A25R:A 0 5 A26R:A 0 6 A27R:A 0 7 A28R:G 0 [Edges] 0 {A13R:C -> A14R:U: adjacent_5p } 0 1 {A14R:U -> A13R:C: adjacent_3p } 0 2 {A13R:C -> A15R:C: upward } 0 3 {A15R:C -> A13R:C: downward } 0 4 {A13R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A28R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A14R:U -> A15R:C: adjacent_5p } 0 7 {A15R:C -> A14R:U: adjacent_3p } 0 8 {A15R:C -> A16R:C: adjacent_5p } 0 9 {A16R:C -> A15R:C: adjacent_3p } 0 10 {A16R:C -> A25R:A: pairing antiparallel cis one_hbond 78 Bs/Wh } 0 11 {A25R:A -> A16R:C: pairing antiparallel cis one_hbond 78 Wh/Bs } 0 12 {A25R:A -> A26R:A: adjacent_5p upward } 0 13 {A26R:A -> A25R:A: adjacent_3p downward } 0 14 {A26R:A -> A27R:A: adjacent_5p } 0 15 {A27R:A -> A26R:A: adjacent_3p } 0 16 {A27R:A -> A28R:G: adjacent_5p upward } 0 17 {A28R:G -> A27R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 2 . . . . 4 1 1 . 6 . . . . . 2 3 7 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 5 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 B1R:G 0 1 B2R:G 0 2 B3R:G 0 3 B4R:C 0 4 B54R:G 0 5 B55R:C 0 6 B56R:U 0 7 B57R:C 0 [Edges] 0 {B1R:G -> B2R:G: adjacent_5p upward } 0 1 {B2R:G -> B1R:G: adjacent_3p downward } 0 2 {B1R:G -> B57R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B57R:C -> B1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B2R:G -> B3R:G: adjacent_5p upward } 0 5 {B3R:G -> B2R:G: adjacent_3p downward } 0 6 {B2R:G -> B56R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B56R:U -> B2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B3R:G -> B4R:C: adjacent_5p upward } 0 9 {B4R:C -> B3R:G: adjacent_3p downward } 0 10 {B3R:G -> B55R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B55R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B4R:C -> B54R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B54R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B54R:G -> B55R:C: adjacent_5p upward } 0 15 {B55R:C -> B54R:G: adjacent_3p downward } 0 16 {B55R:C -> B56R:U: adjacent_5p upward } 0 17 {B56R:U -> B55R:C: adjacent_3p downward } 0 18 {B56R:U -> B57R:C: adjacent_5p } 0 19 {B57R:C -> B56R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B6R:G 0 1 B7R:C 0 2 B8R:C 0 3 B9R:U 0 4 B12R:G 0 5 B13R:G 0 6 B14R:G 0 7 B15R:C 0 [Edges] 0 {B6R:G -> B7R:C: adjacent_5p upward } 0 1 {B7R:C -> B6R:G: adjacent_3p downward } 0 2 {B6R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B7R:C -> B8R:C: adjacent_5p upward } 0 5 {B8R:C -> B7R:C: adjacent_3p downward } 0 6 {B7R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B14R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B8R:C -> B9R:U: adjacent_5p upward } 0 9 {B9R:U -> B8R:C: adjacent_3p downward } 0 10 {B8R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B13R:G -> B8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B9R:U -> B12R:G: pairing parallel trans 87 Bs/Ww } 0 13 {B12R:G -> B9R:U: pairing parallel trans 87 Ww/Bs } 0 14 {B12R:G -> B13R:G: adjacent_5p } 0 15 {B13R:G -> B12R:G: adjacent_3p } 0 16 {B13R:G -> B14R:G: adjacent_5p upward } 0 17 {B14R:G -> B13R:G: adjacent_3p downward } 0 18 {B14R:G -> B15R:C: adjacent_5p upward } 0 19 {B15R:C -> B14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B22R:G 0 1 B23R:U 0 2 B24R:G 0 3 B25R:G 0 4 B43R:C 0 5 B44R:C 0 6 B45R:A 0 7 B46R:C 0 [Edges] 0 {B22R:G -> B23R:U: adjacent_5p upward } 0 1 {B23R:U -> B22R:G: adjacent_3p downward } 0 2 {B22R:G -> B46R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 3 {B46R:C -> B22R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 4 {B23R:U -> B24R:G: adjacent_5p } 0 5 {B24R:G -> B23R:U: adjacent_3p } 0 6 {B23R:U -> B45R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B45R:A -> B23R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B24R:G -> B25R:G: adjacent_5p upward } 0 9 {B25R:G -> B24R:G: adjacent_3p downward } 0 10 {B24R:G -> B44R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B44R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B24R:G -> B45R:A: outward } 0 13 {B45R:A -> B24R:G: outward } 0 14 {B25R:G -> B43R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B43R:C -> B25R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B43R:C -> B44R:C: adjacent_5p } 0 17 {B44R:C -> B43R:C: adjacent_3p } 0 18 {B44R:C -> B45R:A: adjacent_5p } 0 19 {B45R:A -> B44R:C: adjacent_3p } 0 20 {B45R:A -> B46R:C: adjacent_5p upward } 0 21 {B46R:C -> B45R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B23R:U 0 1 B24R:G 0 2 B25R:G 0 3 B26R:G 0 4 B42R:U 0 5 B43R:C 0 6 B44R:C 0 7 B45R:A 0 [Edges] 0 {B23R:U -> B24R:G: adjacent_5p } 0 1 {B24R:G -> B23R:U: adjacent_3p } 0 2 {B23R:U -> B45R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B45R:A -> B23R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B24R:G -> B25R:G: adjacent_5p upward } 0 5 {B25R:G -> B24R:G: adjacent_3p downward } 0 6 {B24R:G -> B44R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B44R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B24R:G -> B45R:A: outward } 0 9 {B45R:A -> B24R:G: outward } 0 10 {B25R:G -> B26R:G: adjacent_5p upward } 0 11 {B26R:G -> B25R:G: adjacent_3p downward } 0 12 {B25R:G -> B43R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B43R:C -> B25R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B26R:G -> B42R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {B42R:U -> B26R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {B26R:G -> B43R:C: outward } 0 17 {B43R:C -> B26R:G: outward } 0 18 {B42R:U -> B43R:C: adjacent_5p } 0 19 {B43R:C -> B42R:U: adjacent_3p } 0 20 {B43R:C -> B44R:C: adjacent_5p } 0 21 {B44R:C -> B43R:C: adjacent_3p } 0 22 {B44R:C -> B45R:A: adjacent_5p } 0 23 {B45R:A -> B44R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 B24R:G 0 1 B25R:G 0 2 B26R:G 0 3 B27R:A 0 4 B41R:G 0 5 B42R:U 0 6 B43R:C 0 7 B44R:C 0 [Edges] 0 {B24R:G -> B25R:G: adjacent_5p upward } 0 1 {B25R:G -> B24R:G: adjacent_3p downward } 0 2 {B24R:G -> B44R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B44R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B25R:G -> B26R:G: adjacent_5p upward } 0 5 {B26R:G -> B25R:G: adjacent_3p downward } 0 6 {B25R:G -> B43R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B43R:C -> B25R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B26R:G -> B27R:A: adjacent_5p upward } 0 9 {B27R:A -> B26R:G: adjacent_3p downward } 0 10 {B26R:G -> B42R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B42R:U -> B26R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {B26R:G -> B43R:C: outward } 0 13 {B43R:C -> B26R:G: outward } 0 14 {B27R:A -> B41R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 15 {B41R:G -> B27R:A: pairing antiparallel cis one_hbond Ws/Ww } 0 16 {B41R:G -> B42R:U: adjacent_5p upward } 0 17 {B42R:U -> B41R:G: adjacent_3p downward } 0 18 {B42R:U -> B43R:C: adjacent_5p } 0 19 {B43R:C -> B42R:U: adjacent_3p } 0 20 {B43R:C -> B44R:C: adjacent_5p } 0 21 {B44R:C -> B43R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B25R:G 0 1 B26R:G 0 2 B27R:A 0 3 B28R:G 0 4 B40R:G 0 5 B41R:G 0 6 B42R:U 0 7 B43R:C 0 [Edges] 0 {B25R:G -> B26R:G: adjacent_5p upward } 0 1 {B26R:G -> B25R:G: adjacent_3p downward } 0 2 {B25R:G -> B43R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B43R:C -> B25R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B26R:G -> B27R:A: adjacent_5p upward } 0 5 {B27R:A -> B26R:G: adjacent_3p downward } 0 6 {B26R:G -> B42R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B42R:U -> B26R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B26R:G -> B43R:C: outward } 0 9 {B43R:C -> B26R:G: outward } 0 10 {B27R:A -> B28R:G: adjacent_5p } 0 11 {B28R:G -> B27R:A: adjacent_3p } 0 12 {B27R:A -> B41R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 13 {B41R:G -> B27R:A: pairing antiparallel cis one_hbond Ws/Ww } 0 14 {B28R:G -> B40R:G: pairing antiparallel cis one_hbond 115 Ww/Wh } 0 15 {B40R:G -> B28R:G: pairing antiparallel cis one_hbond 115 Wh/Ww } 0 16 {B40R:G -> B41R:G: adjacent_5p upward } 0 17 {B41R:G -> B40R:G: adjacent_3p downward } 0 18 {B41R:G -> B42R:U: adjacent_5p upward } 0 19 {B42R:U -> B41R:G: adjacent_3p downward } 0 20 {B42R:U -> B43R:C: adjacent_5p } 0 21 {B43R:C -> B42R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:A 0 2 A6R:C 0 3 A7R:C 0 4 A63R:G 0 5 A64R:G 0 6 A65R:G 0 7 A66R:A 0 [Edges] 0 {A4R:U -> A5R:A: adjacent_5p } 0 1 {A5R:A -> A4R:U: adjacent_3p } 0 2 {A4R:U -> A66R:A: pairing antiparallel trans XXIV Ww/Hh } 0 3 {A66R:A -> A4R:U: pairing antiparallel trans XXIV Hh/Ww } 0 4 {A5R:A -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> A65R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {A65R:G -> A5R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {A5R:A -> A66R:A: outward } 0 9 {A66R:A -> A5R:A: outward } 0 10 {A6R:C -> A7R:C: adjacent_5p } 0 11 {A7R:C -> A6R:C: adjacent_3p } 0 12 {A6R:C -> A64R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A64R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:C -> A63R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A63R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A7R:C -> A64R:G: outward } 0 17 {A64R:G -> A7R:C: outward } 0 18 {A63R:G -> A64R:G: adjacent_5p upward } 0 19 {A64R:G -> A63R:G: adjacent_3p downward } 0 20 {A64R:G -> A65R:G: adjacent_5p upward } 0 21 {A65R:G -> A64R:G: adjacent_3p downward } 0 22 {A65R:G -> A66R:A: adjacent_5p } 0 23 {A66R:A -> A65R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:C 0 2 A7R:C 0 3 A8R:U 0 4 A62R:G 0 5 A63R:G 0 6 A64R:G 0 7 A65R:G 0 [Edges] 0 {A5R:A -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> A65R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A65R:G -> A5R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A6R:C -> A7R:C: adjacent_5p } 0 5 {A7R:C -> A6R:C: adjacent_3p } 0 6 {A6R:C -> A64R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A64R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:C -> A8R:U: adjacent_5p upward } 0 9 {A8R:U -> A7R:C: adjacent_3p downward } 0 10 {A7R:C -> A63R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A63R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:C -> A64R:G: outward } 0 13 {A64R:G -> A7R:C: outward } 0 14 {A8R:U -> A62R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A62R:G -> A8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A62R:G -> A63R:G: adjacent_5p upward } 0 17 {A63R:G -> A62R:G: adjacent_3p downward } 0 18 {A63R:G -> A64R:G: adjacent_5p upward } 0 19 {A64R:G -> A63R:G: adjacent_3p downward } 0 20 {A64R:G -> A65R:G: adjacent_5p upward } 0 21 {A65R:G -> A64R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:G 0 2 A13R:G 0 3 A14R:G 0 4 A58R:C 0 5 A59R:C 0 6 A60R:C 0 7 A61R:G 0 [Edges] 0 {A11R:C -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:C: adjacent_3p downward } 0 2 {A11R:C -> A61R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A61R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:G -> A13R:G: adjacent_5p upward } 0 5 {A13R:G -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> A60R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A60R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> A61R:G: outward } 0 9 {A61R:G -> A12R:G: outward } 0 10 {A13R:G -> A14R:G: adjacent_5p upward } 0 11 {A14R:G -> A13R:G: adjacent_3p downward } 0 12 {A13R:G -> A59R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A59R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:G -> A58R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A58R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A14R:G -> A59R:C: outward } 0 17 {A59R:C -> A14R:G: outward } 0 18 {A58R:C -> A59R:C: adjacent_5p } 0 19 {A59R:C -> A58R:C: adjacent_3p } 0 20 {A59R:C -> A60R:C: adjacent_5p } 0 21 {A60R:C -> A59R:C: adjacent_3p } 0 22 {A60R:C -> A61R:G: adjacent_5p upward } 0 23 {A61R:G -> A60R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:G 0 2 A14R:G 0 3 A15R:C 0 4 A57R:G 0 5 A58R:C 0 6 A59R:C 0 7 A60R:C 0 [Edges] 0 {A12R:G -> A13R:G: adjacent_5p upward } 0 1 {A13R:G -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> A60R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A60R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:G -> A14R:G: adjacent_5p upward } 0 5 {A14R:G -> A13R:G: adjacent_3p downward } 0 6 {A13R:G -> A59R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A59R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:G -> A15R:C: adjacent_5p upward } 0 9 {A15R:C -> A14R:G: adjacent_3p downward } 0 10 {A14R:G -> A58R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A58R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:G -> A59R:C: outward } 0 13 {A59R:C -> A14R:G: outward } 0 14 {A15R:C -> A57R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A57R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A57R:G -> A58R:C: adjacent_5p upward } 0 17 {A58R:C -> A57R:G: adjacent_3p downward } 0 18 {A58R:C -> A59R:C: adjacent_5p } 0 19 {A59R:C -> A58R:C: adjacent_3p } 0 20 {A59R:C -> A60R:C: adjacent_5p } 0 21 {A60R:C -> A59R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A19R:G 0 1 A20R:G 0 2 A21R:A 0 3 A22R:G 0 4 A51R:U 0 5 A52R:U 0 6 A53R:C 0 7 A54R:U 0 [Edges] 0 {A19R:G -> A20R:G: adjacent_5p upward } 0 1 {A20R:G -> A19R:G: adjacent_3p downward } 0 2 {A19R:G -> A54R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A54R:U -> A19R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A20R:G -> A21R:A: adjacent_5p upward } 0 5 {A21R:A -> A20R:G: adjacent_3p downward } 0 6 {A20R:G -> A53R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A53R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A21R:A -> A22R:G: adjacent_5p upward } 0 9 {A22R:G -> A21R:A: adjacent_3p downward } 0 10 {A21R:A -> A52R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A52R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A22R:G -> A51R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A51R:U -> A22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A51R:U -> A52R:U: adjacent_5p } 0 15 {A52R:U -> A51R:U: adjacent_3p } 0 16 {A52R:U -> A53R:C: adjacent_5p } 0 17 {A53R:C -> A52R:U: adjacent_3p } 0 18 {A53R:C -> A54R:U: adjacent_5p upward } 0 19 {A54R:U -> A53R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A20R:G 0 1 A21R:A 0 2 A22R:G 0 3 A23R:C 0 4 A50R:G 0 5 A51R:U 0 6 A52R:U 0 7 A53R:C 0 [Edges] 0 {A20R:G -> A21R:A: adjacent_5p upward } 0 1 {A21R:A -> A20R:G: adjacent_3p downward } 0 2 {A20R:G -> A53R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A53R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A21R:A -> A22R:G: adjacent_5p upward } 0 5 {A22R:G -> A21R:A: adjacent_3p downward } 0 6 {A21R:A -> A52R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A52R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A22R:G -> A23R:C: adjacent_5p upward } 0 9 {A23R:C -> A22R:G: adjacent_3p downward } 0 10 {A22R:G -> A51R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A51R:U -> A22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A23R:C -> A50R:G: pairing antiparallel cis one_hbond Ws/Ww } 0 13 {A50R:G -> A23R:C: pairing antiparallel cis one_hbond Ww/Ws } 0 14 {A50R:G -> A51R:U: adjacent_5p upward } 0 15 {A51R:U -> A50R:G: adjacent_3p downward } 0 16 {A51R:U -> A52R:U: adjacent_5p } 0 17 {A52R:U -> A51R:U: adjacent_3p } 0 18 {A52R:U -> A53R:C: adjacent_5p } 0 19 {A53R:C -> A52R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A21R:A 0 1 A22R:G 0 2 A23R:C 0 3 A24R:C 0 4 A49R:G 0 5 A50R:G 0 6 A51R:U 0 7 A52R:U 0 [Edges] 0 {A21R:A -> A22R:G: adjacent_5p upward } 0 1 {A22R:G -> A21R:A: adjacent_3p downward } 0 2 {A21R:A -> A52R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A52R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A22R:G -> A23R:C: adjacent_5p upward } 0 5 {A23R:C -> A22R:G: adjacent_3p downward } 0 6 {A22R:G -> A51R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A51R:U -> A22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A23R:C -> A24R:C: adjacent_5p upward } 0 9 {A24R:C -> A23R:C: adjacent_3p downward } 0 10 {A23R:C -> A50R:G: pairing antiparallel cis one_hbond Ws/Ww } 0 11 {A50R:G -> A23R:C: pairing antiparallel cis one_hbond Ww/Ws } 0 12 {A24R:C -> A49R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 13 {A49R:G -> A24R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 14 {A49R:G -> A50R:G: adjacent_5p upward } 0 15 {A50R:G -> A49R:G: adjacent_3p downward } 0 16 {A50R:G -> A51R:U: adjacent_5p upward } 0 17 {A51R:U -> A50R:G: adjacent_3p downward } 0 18 {A51R:U -> A52R:U: adjacent_5p } 0 19 {A52R:U -> A51R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A22R:G 0 1 A23R:C 0 2 A24R:C 0 3 A25R:G 0 4 A48R:C 0 5 A49R:G 0 6 A50R:G 0 7 A51R:U 0 [Edges] 0 {A22R:G -> A23R:C: adjacent_5p upward } 0 1 {A23R:C -> A22R:G: adjacent_3p downward } 0 2 {A22R:G -> A51R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A51R:U -> A22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A23R:C -> A24R:C: adjacent_5p upward } 0 5 {A24R:C -> A23R:C: adjacent_3p downward } 0 6 {A23R:C -> A50R:G: pairing antiparallel cis one_hbond Ws/Ww } 0 7 {A50R:G -> A23R:C: pairing antiparallel cis one_hbond Ww/Ws } 0 8 {A24R:C -> A25R:G: adjacent_5p upward } 0 9 {A25R:G -> A24R:C: adjacent_3p downward } 0 10 {A24R:C -> A49R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 11 {A49R:G -> A24R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 12 {A25R:G -> A48R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A48R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A25R:G -> A49R:G: outward } 0 15 {A49R:G -> A25R:G: outward } 0 16 {A48R:C -> A49R:G: adjacent_5p upward } 0 17 {A49R:G -> A48R:C: adjacent_3p downward } 0 18 {A49R:G -> A50R:G: adjacent_5p upward } 0 19 {A50R:G -> A49R:G: adjacent_3p downward } 0 20 {A50R:G -> A51R:U: adjacent_5p upward } 0 21 {A51R:U -> A50R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A23R:C 0 1 A24R:C 0 2 A25R:G 0 3 A26R:U 0 4 A47R:A 0 5 A48R:C 0 6 A49R:G 0 7 A50R:G 0 [Edges] 0 {A23R:C -> A24R:C: adjacent_5p upward } 0 1 {A24R:C -> A23R:C: adjacent_3p downward } 0 2 {A23R:C -> A50R:G: pairing antiparallel cis one_hbond Ws/Ww } 0 3 {A50R:G -> A23R:C: pairing antiparallel cis one_hbond Ww/Ws } 0 4 {A24R:C -> A25R:G: adjacent_5p upward } 0 5 {A25R:G -> A24R:C: adjacent_3p downward } 0 6 {A24R:C -> A49R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 7 {A49R:G -> A24R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 8 {A25R:G -> A26R:U: adjacent_5p upward } 0 9 {A26R:U -> A25R:G: adjacent_3p downward } 0 10 {A25R:G -> A48R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A48R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A25R:G -> A49R:G: outward } 0 13 {A49R:G -> A25R:G: outward } 0 14 {A26R:U -> A47R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A47R:A -> A26R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A47R:A -> A48R:C: adjacent_5p upward } 0 17 {A48R:C -> A47R:A: adjacent_3p downward } 0 18 {A48R:C -> A49R:G: adjacent_5p upward } 0 19 {A49R:G -> A48R:C: adjacent_3p downward } 0 20 {A49R:G -> A50R:G: adjacent_5p upward } 0 21 {A50R:G -> A49R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A24R:C 0 1 A25R:G 0 2 A26R:U 0 3 A27R:A 0 4 A46R:U 0 5 A47R:A 0 6 A48R:C 0 7 A49R:G 0 [Edges] 0 {A24R:C -> A25R:G: adjacent_5p upward } 0 1 {A25R:G -> A24R:C: adjacent_3p downward } 0 2 {A24R:C -> A49R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 3 {A49R:G -> A24R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 4 {A25R:G -> A26R:U: adjacent_5p upward } 0 5 {A26R:U -> A25R:G: adjacent_3p downward } 0 6 {A25R:G -> A48R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A48R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A25R:G -> A49R:G: outward } 0 9 {A49R:G -> A25R:G: outward } 0 10 {A26R:U -> A27R:A: adjacent_5p } 0 11 {A27R:A -> A26R:U: adjacent_3p } 0 12 {A26R:U -> A47R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A47R:A -> A26R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A27R:A -> A46R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 15 {A46R:U -> A27R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 16 {A27R:A -> A47R:A: outward } 0 17 {A47R:A -> A27R:A: outward } 0 18 {A46R:U -> A47R:A: adjacent_5p } 0 19 {A47R:A -> A46R:U: adjacent_3p } 0 20 {A47R:A -> A48R:C: adjacent_5p upward } 0 21 {A48R:C -> A47R:A: adjacent_3p downward } 0 22 {A48R:C -> A49R:G: adjacent_5p upward } 0 23 {A49R:G -> A48R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A25R:G 0 1 A26R:U 0 2 A27R:A 0 3 A28R:U 0 4 A45R:G 0 5 A46R:U 0 6 A47R:A 0 7 A48R:C 0 [Edges] 0 {A25R:G -> A26R:U: adjacent_5p upward } 0 1 {A26R:U -> A25R:G: adjacent_3p downward } 0 2 {A25R:G -> A48R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A48R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A26R:U -> A27R:A: adjacent_5p } 0 5 {A27R:A -> A26R:U: adjacent_3p } 0 6 {A26R:U -> A47R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A47R:A -> A26R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A27R:A -> A28R:U: adjacent_5p upward } 0 9 {A28R:U -> A27R:A: adjacent_3p downward } 0 10 {A27R:A -> A46R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {A46R:U -> A27R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {A27R:A -> A47R:A: outward } 0 13 {A47R:A -> A27R:A: outward } 0 14 {A28R:U -> A45R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A45R:G -> A28R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A45R:G -> A46R:U: adjacent_5p upward } 0 17 {A46R:U -> A45R:G: adjacent_3p downward } 0 18 {A46R:U -> A47R:A: adjacent_5p } 0 19 {A47R:A -> A46R:U: adjacent_3p } 0 20 {A47R:A -> A48R:C: adjacent_5p upward } 0 21 {A48R:C -> A47R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A29R:G 0 1 A30R:C 0 2 A31R:G 0 3 A32R:A 0 4 A39R:U 0 5 A40R:C 0 6 A41R:G 0 7 A42R:C 0 [Edges] 0 {A29R:G -> A30R:C: adjacent_5p upward } 0 1 {A30R:C -> A29R:G: adjacent_3p downward } 0 2 {A29R:G -> A42R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A42R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A30R:C -> A31R:G: adjacent_5p } 0 5 {A31R:G -> A30R:C: adjacent_3p } 0 6 {A30R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A41R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A31R:G -> A32R:A: adjacent_5p upward } 0 9 {A32R:A -> A31R:G: adjacent_3p downward } 0 10 {A31R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A40R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A31R:G -> A41R:G: outward } 0 13 {A41R:G -> A31R:G: outward } 0 14 {A32R:A -> A39R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A39R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A39R:U -> A40R:C: adjacent_5p upward } 0 17 {A40R:C -> A39R:U: adjacent_3p downward } 0 18 {A40R:C -> A41R:G: adjacent_5p upward } 0 19 {A41R:G -> A40R:C: adjacent_3p downward } 0 20 {A41R:G -> A42R:C: adjacent_5p upward } 0 21 {A42R:C -> A41R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A30R:C 0 1 A31R:G 0 2 A32R:A 0 3 A33R:U 0 4 A38R:G 0 5 A39R:U 0 6 A40R:C 0 7 A41R:G 0 [Edges] 0 {A30R:C -> A31R:G: adjacent_5p } 0 1 {A31R:G -> A30R:C: adjacent_3p } 0 2 {A30R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A41R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A31R:G -> A32R:A: adjacent_5p upward } 0 5 {A32R:A -> A31R:G: adjacent_3p downward } 0 6 {A31R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A40R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A31R:G -> A41R:G: outward } 0 9 {A41R:G -> A31R:G: outward } 0 10 {A32R:A -> A33R:U: adjacent_5p upward } 0 11 {A33R:U -> A32R:A: adjacent_3p downward } 0 12 {A32R:A -> A39R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A39R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A33R:U -> A38R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A38R:G -> A33R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A38R:G -> A39R:U: adjacent_5p upward } 0 17 {A39R:U -> A38R:G: adjacent_3p downward } 0 18 {A39R:U -> A40R:C: adjacent_5p upward } 0 19 {A40R:C -> A39R:U: adjacent_3p downward } 0 20 {A40R:C -> A41R:G: adjacent_5p upward } 0 21 {A41R:G -> A40R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A31R:G 0 1 A32R:A 0 2 A33R:U 0 3 A34R:G 0 4 A37R:A 0 5 A38R:G 0 6 A39R:U 0 7 A40R:C 0 [Edges] 0 {A31R:G -> A32R:A: adjacent_5p upward } 0 1 {A32R:A -> A31R:G: adjacent_3p downward } 0 2 {A31R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A40R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A32R:A -> A33R:U: adjacent_5p upward } 0 5 {A33R:U -> A32R:A: adjacent_3p downward } 0 6 {A32R:A -> A39R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A39R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A33R:U -> A34R:G: adjacent_5p upward } 0 9 {A34R:G -> A33R:U: adjacent_3p downward } 0 10 {A33R:U -> A38R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A38R:G -> A33R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A34R:G -> A37R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A37R:A -> A34R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A37R:A -> A38R:G: adjacent_5p upward } 0 15 {A38R:G -> A37R:A: adjacent_3p downward } 0 16 {A38R:G -> A39R:U: adjacent_5p upward } 0 17 {A39R:U -> A38R:G: adjacent_3p downward } 0 18 {A39R:U -> A40R:C: adjacent_5p upward } 0 19 {A40R:C -> A39R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 C4R:U 0 1 C5R:U 0 2 C6R:G 0 3 C7R:U 0 4 C22R:G 0 5 C23R:C 0 6 C24R:A 0 7 C25R:A 0 [Edges] 0 {C4R:U -> C5R:U: adjacent_5p upward } 0 1 {C5R:U -> C4R:U: adjacent_3p downward } 0 2 {C4R:U -> C25R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C25R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C5R:U -> C6R:G: adjacent_5p } 0 5 {C6R:G -> C5R:U: adjacent_3p } 0 6 {C5R:U -> C24R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C24R:A -> C5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C6R:G -> C7R:U: adjacent_5p upward } 0 9 {C7R:U -> C6R:G: adjacent_3p downward } 0 10 {C6R:G -> C23R:C: pairing antiparallel cis Ww/Ww } 0 11 {C23R:C -> C6R:G: pairing antiparallel cis Ww/Ww } 0 12 {C6R:G -> C24R:A: outward } 0 13 {C24R:A -> C6R:G: outward } 0 14 {C7R:U -> C22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {C22R:G -> C7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {C22R:G -> C23R:C: adjacent_5p upward } 0 17 {C23R:C -> C22R:G: adjacent_3p downward } 0 18 {C23R:C -> C24R:A: adjacent_5p upward } 0 19 {C24R:A -> C23R:C: adjacent_3p downward } 0 20 {C24R:A -> C25R:A: adjacent_5p upward } 0 21 {C25R:A -> C24R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C9R:A 0 1 C10R:C 0 2 C11R:U 0 3 C12R:G 0 4 C19R:C 0 5 C20R:A 0 6 C21R:G 0 7 C22R:G 0 [Edges] 0 {C9R:A -> C10R:C: adjacent_5p upward } 0 1 {C10R:C -> C9R:A: adjacent_3p downward } 0 2 {C9R:A -> C22R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {C22R:G -> C9R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {C10R:C -> C11R:U: adjacent_5p upward } 0 5 {C11R:U -> C10R:C: adjacent_3p downward } 0 6 {C10R:C -> C21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C21R:G -> C10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C11R:U -> C12R:G: adjacent_5p } 0 9 {C12R:G -> C11R:U: adjacent_3p } 0 10 {C11R:U -> C20R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C20R:A -> C11R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C12R:G -> C19R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C19R:C -> C12R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C19R:C -> C20R:A: adjacent_5p upward } 0 15 {C20R:A -> C19R:C: adjacent_3p downward } 0 16 {C20R:A -> C21R:G: adjacent_5p upward } 0 17 {C21R:G -> C20R:A: adjacent_3p downward } 0 18 {C21R:G -> C22R:G: adjacent_5p upward } 0 19 {C22R:G -> C21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C10R:C 0 1 C11R:U 0 2 C12R:G 0 3 C13R:C 0 4 C18R:G 0 5 C19R:C 0 6 C20R:A 0 7 C21R:G 0 [Edges] 0 {C10R:C -> C11R:U: adjacent_5p upward } 0 1 {C11R:U -> C10R:C: adjacent_3p downward } 0 2 {C10R:C -> C21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C21R:G -> C10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C11R:U -> C12R:G: adjacent_5p } 0 5 {C12R:G -> C11R:U: adjacent_3p } 0 6 {C11R:U -> C20R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C20R:A -> C11R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C12R:G -> C13R:C: adjacent_5p upward } 0 9 {C13R:C -> C12R:G: adjacent_3p downward } 0 10 {C12R:G -> C19R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C19R:C -> C12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C13R:C -> C18R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C18R:G -> C13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C18R:G -> C19R:C: adjacent_5p upward } 0 15 {C19R:C -> C18R:G: adjacent_3p downward } 0 16 {C19R:C -> C20R:A: adjacent_5p upward } 0 17 {C20R:A -> C19R:C: adjacent_3p downward } 0 18 {C20R:A -> C21R:G: adjacent_5p upward } 0 19 {C21R:G -> C20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C11R:U 0 1 C12R:G 0 2 C13R:C 0 3 C14R:U 0 4 C17R:G 0 5 C18R:G 0 6 C19R:C 0 7 C20R:A 0 [Edges] 0 {C11R:U -> C12R:G: adjacent_5p } 0 1 {C12R:G -> C11R:U: adjacent_3p } 0 2 {C11R:U -> C20R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C20R:A -> C11R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C12R:G -> C13R:C: adjacent_5p upward } 0 5 {C13R:C -> C12R:G: adjacent_3p downward } 0 6 {C12R:G -> C19R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C19R:C -> C12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C13R:C -> C14R:U: adjacent_5p upward } 0 9 {C14R:U -> C13R:C: adjacent_3p downward } 0 10 {C13R:C -> C18R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C18R:G -> C13R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C14R:U -> C17R:G: pairing parallel trans 87 Bs/Ww } 0 13 {C17R:G -> C14R:U: pairing parallel trans 87 Ww/Bs } 0 14 {C17R:G -> C18R:G: adjacent_5p } 0 15 {C18R:G -> C17R:G: adjacent_3p } 0 16 {C18R:G -> C19R:C: adjacent_5p upward } 0 17 {C19R:C -> C18R:G: adjacent_3p downward } 0 18 {C19R:C -> C20R:A: adjacent_5p upward } 0 19 {C20R:A -> C19R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:G 0 3 A5R:A 0 4 A24R:C 0 5 A25R:C 0 6 A26R:A 0 7 A27R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p } 0 5 {A4R:G -> A3R:U: adjacent_3p } 0 6 {A3R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A26R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A25R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A26R:A: outward } 0 13 {A26R:A -> A4R:G: outward } 0 14 {A5R:A -> A24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 15 {A24R:C -> A5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 16 {A24R:C -> A25R:C: adjacent_5p upward } 0 17 {A25R:C -> A24R:C: adjacent_3p downward } 0 18 {A25R:C -> A26R:A: adjacent_5p upward } 0 19 {A26R:A -> A25R:C: adjacent_3p downward } 0 20 {A26R:A -> A27R:C: adjacent_5p upward } 0 21 {A27R:C -> A26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:A 0 3 A6R:C 0 4 A23R:A 0 5 A24R:C 0 6 A25R:C 0 7 A26R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p } 0 1 {A4R:G -> A3R:U: adjacent_3p } 0 2 {A3R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A26R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A25R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A26R:A: outward } 0 9 {A26R:A -> A4R:G: outward } 0 10 {A5R:A -> A6R:C: adjacent_5p upward } 0 11 {A6R:C -> A5R:A: adjacent_3p downward } 0 12 {A5R:A -> A24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 13 {A24R:C -> A5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 14 {A6R:C -> A23R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 15 {A23R:A -> A6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 16 {A23R:A -> A24R:C: adjacent_5p upward } 0 17 {A24R:C -> A23R:A: adjacent_3p downward } 0 18 {A24R:C -> A25R:C: adjacent_5p upward } 0 19 {A25R:C -> A24R:C: adjacent_3p downward } 0 20 {A25R:C -> A26R:A: adjacent_5p upward } 0 21 {A26R:A -> A25R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:C 0 3 A7R:C 0 4 A22R:G 0 5 A23R:A 0 6 A24R:C 0 7 A25R:C 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> A24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 7 {A24R:C -> A5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 8 {A6R:C -> A7R:C: adjacent_5p upward } 0 9 {A7R:C -> A6R:C: adjacent_3p downward } 0 10 {A6R:C -> A23R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 11 {A23R:A -> A6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 12 {A7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A22R:G -> A23R:A: adjacent_5p upward } 0 15 {A23R:A -> A22R:G: adjacent_3p downward } 0 16 {A23R:A -> A24R:C: adjacent_5p upward } 0 17 {A24R:C -> A23R:A: adjacent_3p downward } 0 18 {A24R:C -> A25R:C: adjacent_5p upward } 0 19 {A25R:C -> A24R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:C 0 2 A7R:C 0 3 A8R:U 0 4 A21R:G 0 5 A22R:G 0 6 A23R:A 0 7 A24R:C 0 [Edges] 0 {A5R:A -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> A24R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 3 {A24R:C -> A5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 4 {A6R:C -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:C: adjacent_3p downward } 0 6 {A6R:C -> A23R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 7 {A23R:A -> A6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 8 {A7R:C -> A8R:U: adjacent_5p upward } 0 9 {A8R:U -> A7R:C: adjacent_3p downward } 0 10 {A7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:U -> A21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A21R:G -> A8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A21R:G -> A22R:G: adjacent_5p upward } 0 15 {A22R:G -> A21R:G: adjacent_3p downward } 0 16 {A22R:G -> A23R:A: adjacent_5p upward } 0 17 {A23R:A -> A22R:G: adjacent_3p downward } 0 18 {A23R:A -> A24R:C: adjacent_5p upward } 0 19 {A24R:C -> A23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:C 0 2 A8R:U 0 3 A9R:C 0 4 A20R:G 0 5 A21R:G 0 6 A22R:G 0 7 A23R:A 0 [Edges] 0 {A6R:C -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:C: adjacent_3p downward } 0 2 {A6R:C -> A23R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 3 {A23R:A -> A6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 4 {A7R:C -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:C: adjacent_3p downward } 0 6 {A7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:U -> A9R:C: adjacent_5p upward } 0 9 {A9R:C -> A8R:U: adjacent_3p downward } 0 10 {A8R:U -> A21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A21R:G -> A8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A9R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A20R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A20R:G -> A21R:G: adjacent_5p upward } 0 15 {A21R:G -> A20R:G: adjacent_3p downward } 0 16 {A21R:G -> A22R:G: adjacent_5p upward } 0 17 {A22R:G -> A21R:G: adjacent_3p downward } 0 18 {A22R:G -> A23R:A: adjacent_5p upward } 0 19 {A23R:A -> A22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:U 0 2 A9R:C 0 3 A10R:C 0 4 A19R:G 0 5 A20R:G 0 6 A21R:G 0 7 A22R:G 0 [Edges] 0 {A7R:C -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:U -> A9R:C: adjacent_5p upward } 0 5 {A9R:C -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> A21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A21R:G -> A8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A9R:C -> A10R:C: adjacent_5p upward } 0 9 {A10R:C -> A9R:C: adjacent_3p downward } 0 10 {A9R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A19R:G -> A20R:G: adjacent_5p upward } 0 15 {A20R:G -> A19R:G: adjacent_3p downward } 0 16 {A20R:G -> A21R:G: adjacent_5p upward } 0 17 {A21R:G -> A20R:G: adjacent_3p downward } 0 18 {A21R:G -> A22R:G: adjacent_5p upward } 0 19 {A22R:G -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:C 0 2 A10R:C 0 3 A11R:C 0 4 A18R:G 0 5 A19R:G 0 6 A20R:G 0 7 A21R:G 0 [Edges] 0 {A8R:U -> A9R:C: adjacent_5p upward } 0 1 {A9R:C -> A8R:U: adjacent_3p downward } 0 2 {A8R:U -> A21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A21R:G -> A8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A9R:C -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:C: adjacent_3p downward } 0 6 {A9R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:C -> A11R:C: adjacent_5p upward } 0 9 {A11R:C -> A10R:C: adjacent_3p downward } 0 10 {A10R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A19R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A11R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A18R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A18R:G -> A19R:G: adjacent_5p upward } 0 15 {A19R:G -> A18R:G: adjacent_3p downward } 0 16 {A19R:G -> A20R:G: adjacent_5p upward } 0 17 {A20R:G -> A19R:G: adjacent_3p downward } 0 18 {A20R:G -> A21R:G: adjacent_5p upward } 0 19 {A21R:G -> A20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A9R:C 0 1 A10R:C 0 2 A11R:C 0 3 A12R:G 0 4 A17R:C 0 5 A18R:G 0 6 A19R:G 0 7 A20R:G 0 [Edges] 0 {A9R:C -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:C: adjacent_3p downward } 0 2 {A9R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:C -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:C: adjacent_3p downward } 0 6 {A10R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:C -> A12R:G: adjacent_5p upward } 0 9 {A12R:G -> A11R:C: adjacent_3p downward } 0 10 {A11R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A18R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A17R:C -> A18R:G: adjacent_5p upward } 0 15 {A18R:G -> A17R:C: adjacent_3p downward } 0 16 {A18R:G -> A19R:G: adjacent_5p upward } 0 17 {A19R:G -> A18R:G: adjacent_3p downward } 0 18 {A19R:G -> A20R:G: adjacent_5p upward } 0 19 {A20R:G -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:C 0 1 A11R:C 0 2 A12R:G 0 3 A13R:G 0 4 A16R:G 0 5 A17R:C 0 6 A18R:G 0 7 A19R:G 0 [Edges] 0 {A10R:C -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:C: adjacent_3p downward } 0 2 {A10R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:C -> A12R:G: adjacent_5p upward } 0 5 {A12R:G -> A11R:C: adjacent_3p downward } 0 6 {A11R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A18R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> A13R:G: adjacent_5p upward } 0 9 {A13R:G -> A12R:G: adjacent_3p downward } 0 10 {A12R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:G -> A16R:G: pairing antiparallel cis one_hbond 108 Sw/Hh } 0 13 {A16R:G -> A13R:G: pairing antiparallel cis one_hbond 108 Hh/Sw } 0 14 {A16R:G -> A17R:C: adjacent_5p upward } 0 15 {A17R:C -> A16R:G: adjacent_3p downward } 0 16 {A17R:C -> A18R:G: adjacent_5p upward } 0 17 {A18R:G -> A17R:C: adjacent_3p downward } 0 18 {A18R:G -> A19R:G: adjacent_5p upward } 0 19 {A19R:G -> A18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:C 0 3 A6R:G 0 4 A15R:C 0 5 A16R:G 0 6 A17R:C 0 7 A18R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A18R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A18R:G: outward } 0 9 {A18R:G -> A4R:G: outward } 0 10 {A5R:C -> A6R:G: adjacent_5p upward } 0 11 {A6R:G -> A5R:C: adjacent_3p downward } 0 12 {A5R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A16R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A15R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A6R:G -> A16R:G: outward } 0 17 {A16R:G -> A6R:G: outward } 0 18 {A15R:C -> A16R:G: adjacent_5p upward } 0 19 {A16R:G -> A15R:C: adjacent_3p downward } 0 20 {A16R:G -> A17R:C: adjacent_5p upward } 0 21 {A17R:C -> A16R:G: adjacent_3p downward } 0 22 {A17R:C -> A18R:G: adjacent_5p } 0 23 {A18R:G -> A17R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:C 0 2 A6R:G 0 3 A7R:G 0 4 A14R:C 0 5 A15R:C 0 6 A16R:G 0 7 A17R:C 0 [Edges] 0 {A4R:G -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A16R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:G: adjacent_3p downward } 0 10 {A6R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A15R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:G -> A16R:G: outward } 0 13 {A16R:G -> A6R:G: outward } 0 14 {A7R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A14R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A14R:C -> A15R:C: adjacent_5p } 0 17 {A15R:C -> A14R:C: adjacent_3p } 0 18 {A15R:C -> A16R:G: adjacent_5p upward } 0 19 {A16R:G -> A15R:C: adjacent_3p downward } 0 20 {A16R:G -> A17R:C: adjacent_5p upward } 0 21 {A17R:C -> A16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:U 0 2 A14R:C 0 3 A15R:C 0 4 A23R:A 0 5 A24R:A 0 6 A25R:A 0 7 A26R:C 0 [Edges] 0 {A12R:G -> A13R:U: adjacent_5p } 0 1 {A13R:U -> A12R:G: adjacent_3p } 0 2 {A12R:G -> A14R:C: upward } 0 3 {A14R:C -> A12R:G: downward } 0 4 {A12R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A26R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A13R:U -> A14R:C: adjacent_5p } 0 7 {A14R:C -> A13R:U: adjacent_3p } 0 8 {A14R:C -> A15R:C: adjacent_5p } 0 9 {A15R:C -> A14R:C: adjacent_3p } 0 10 {A14R:C -> A25R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 11 {A25R:A -> A14R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 12 {A15R:C -> A23R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 13 {A23R:A -> A15R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 14 {A23R:A -> A24R:A: adjacent_5p upward } 0 15 {A24R:A -> A23R:A: adjacent_3p downward } 0 16 {A24R:A -> A25R:A: adjacent_5p upward } 0 17 {A25R:A -> A24R:A: adjacent_3p downward } 0 18 {A25R:A -> A26R:C: adjacent_5p upward } 0 19 {A26R:C -> A25R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 2 . . . . 4 1 1 . 6 . . . . . 2 3 7 . 8 . . 10 . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . . 11 . . 17 . 18 7 5 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A107R:U 0 1 A108R:G 0 2 A109R:G 0 3 A110R:G 0 4 A211R:C 0 5 A212R:C 0 6 A213R:C 0 7 A214R:A 0 [Edges] 0 {A107R:U -> A108R:G: adjacent_5p upward } 0 1 {A108R:G -> A107R:U: adjacent_3p downward } 0 2 {A107R:U -> A214R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {A214R:A -> A107R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A108R:G -> A109R:G: adjacent_5p upward } 0 5 {A109R:G -> A108R:G: adjacent_3p downward } 0 6 {A108R:G -> A213R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A213R:C -> A108R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A108R:G -> A214R:A: outward } 0 9 {A214R:A -> A108R:G: outward } 0 10 {A109R:G -> A110R:G: adjacent_5p upward } 0 11 {A110R:G -> A109R:G: adjacent_3p downward } 0 12 {A109R:G -> A212R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A212R:C -> A109R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A110R:G -> A211R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A211R:C -> A110R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A211R:C -> A212R:C: adjacent_5p upward } 0 17 {A212R:C -> A211R:C: adjacent_3p downward } 0 18 {A212R:C -> A213R:C: adjacent_5p } 0 19 {A213R:C -> A212R:C: adjacent_3p } 0 20 {A213R:C -> A214R:A: adjacent_5p } 0 21 {A214R:A -> A213R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A108R:G 0 1 A109R:G 0 2 A110R:G 0 3 A111R:G 0 4 A209R:C 0 5 A211R:C 0 6 A212R:C 0 7 A213R:C 0 [Edges] 0 {A108R:G -> A109R:G: adjacent_5p upward } 0 1 {A109R:G -> A108R:G: adjacent_3p downward } 0 2 {A108R:G -> A213R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A213R:C -> A108R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A109R:G -> A110R:G: adjacent_5p upward } 0 5 {A110R:G -> A109R:G: adjacent_3p downward } 0 6 {A109R:G -> A212R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A212R:C -> A109R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A110R:G -> A111R:G: adjacent_5p upward } 0 9 {A111R:G -> A110R:G: adjacent_3p downward } 0 10 {A110R:G -> A211R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A211R:C -> A110R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A111R:G -> A209R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A209R:C -> A111R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A209R:C -> A211R:C: adjacent_5p upward } 0 15 {A211R:C -> A209R:C: adjacent_3p downward } 0 16 {A211R:C -> A212R:C: adjacent_5p upward } 0 17 {A212R:C -> A211R:C: adjacent_3p downward } 0 18 {A212R:C -> A213R:C: adjacent_5p } 0 19 {A213R:C -> A212R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A109R:G 0 1 A110R:G 0 2 A111R:G 0 3 A112R:G 0 4 A208R:C 0 5 A209R:C 0 6 A211R:C 0 7 A212R:C 0 [Edges] 0 {A109R:G -> A110R:G: adjacent_5p upward } 0 1 {A110R:G -> A109R:G: adjacent_3p downward } 0 2 {A109R:G -> A212R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A212R:C -> A109R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A110R:G -> A111R:G: adjacent_5p upward } 0 5 {A111R:G -> A110R:G: adjacent_3p downward } 0 6 {A110R:G -> A211R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A211R:C -> A110R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A111R:G -> A112R:G: adjacent_5p upward } 0 9 {A112R:G -> A111R:G: adjacent_3p downward } 0 10 {A111R:G -> A209R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A209R:C -> A111R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A112R:G -> A208R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A208R:C -> A112R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A208R:C -> A209R:C: adjacent_5p } 0 15 {A209R:C -> A208R:C: adjacent_3p } 0 16 {A209R:C -> A211R:C: adjacent_5p upward } 0 17 {A211R:C -> A209R:C: adjacent_3p downward } 0 18 {A211R:C -> A212R:C: adjacent_5p upward } 0 19 {A212R:C -> A211R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A110R:G 0 1 A111R:G 0 2 A112R:G 0 3 A113R:A 0 4 A207R:A 0 5 A208R:C 0 6 A209R:C 0 7 A211R:C 0 [Edges] 0 {A110R:G -> A111R:G: adjacent_5p upward } 0 1 {A111R:G -> A110R:G: adjacent_3p downward } 0 2 {A110R:G -> A211R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A211R:C -> A110R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A111R:G -> A112R:G: adjacent_5p upward } 0 5 {A112R:G -> A111R:G: adjacent_3p downward } 0 6 {A111R:G -> A209R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A209R:C -> A111R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A112R:G -> A113R:A: adjacent_5p upward } 0 9 {A113R:A -> A112R:G: adjacent_3p downward } 0 10 {A112R:G -> A208R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A208R:C -> A112R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A113R:A -> A207R:A: pairing antiparallel trans 41 Ss/Hh } 0 13 {A207R:A -> A113R:A: pairing antiparallel trans 41 Hh/Ss } 0 14 {A207R:A -> A208R:C: adjacent_5p upward } 0 15 {A208R:C -> A207R:A: adjacent_3p downward } 0 16 {A208R:C -> A209R:C: adjacent_5p } 0 17 {A209R:C -> A208R:C: adjacent_3p } 0 18 {A209R:C -> A211R:C: adjacent_5p upward } 0 19 {A211R:C -> A209R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A111R:G 0 1 A112R:G 0 2 A113R:A 0 3 A114R:A 0 4 A206R:A 0 5 A207R:A 0 6 A208R:C 0 7 A209R:C 0 [Edges] 0 {A111R:G -> A112R:G: adjacent_5p upward } 0 1 {A112R:G -> A111R:G: adjacent_3p downward } 0 2 {A111R:G -> A209R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A209R:C -> A111R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A112R:G -> A113R:A: adjacent_5p upward } 0 5 {A113R:A -> A112R:G: adjacent_3p downward } 0 6 {A112R:G -> A208R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A208R:C -> A112R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A113R:A -> A114R:A: adjacent_5p } 0 9 {A114R:A -> A113R:A: adjacent_3p } 0 10 {A113R:A -> A206R:A: inward } 0 11 {A206R:A -> A113R:A: inward } 0 12 {A113R:A -> A207R:A: pairing antiparallel trans 41 Ss/Hh } 0 13 {A207R:A -> A113R:A: pairing antiparallel trans 41 Hh/Ss } 0 14 {A114R:A -> A206R:A: pairing antiparallel trans one_hbond 41 Hh/Ss } 0 15 {A206R:A -> A114R:A: pairing antiparallel trans one_hbond 41 Ss/Hh } 0 16 {A114R:A -> A207R:A: outward } 0 17 {A207R:A -> A114R:A: outward } 0 18 {A206R:A -> A207R:A: adjacent_5p } 0 19 {A207R:A -> A206R:A: adjacent_3p } 0 20 {A207R:A -> A208R:C: adjacent_5p upward } 0 21 {A208R:C -> A207R:A: adjacent_3p downward } 0 22 {A208R:C -> A209R:C: adjacent_5p } 0 23 {A209R:C -> A208R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 12 . . 3 . . 9 . 14 16 . . 4 . . 11 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A116R:G 0 1 A117R:G 0 2 A118R:G 0 3 A119R:G 0 4 A202R:U 0 5 A203R:C 0 6 A204R:C 0 7 A205R:U 0 [Edges] 0 {A116R:G -> A117R:G: adjacent_5p upward } 0 1 {A117R:G -> A116R:G: adjacent_3p downward } 0 2 {A116R:G -> A205R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A205R:U -> A116R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A117R:G -> A118R:G: adjacent_5p upward } 0 5 {A118R:G -> A117R:G: adjacent_3p downward } 0 6 {A117R:G -> A204R:C: pairing antiparallel cis Ww/Ww } 0 7 {A204R:C -> A117R:G: pairing antiparallel cis Ww/Ww } 0 8 {A118R:G -> A119R:G: adjacent_5p upward } 0 9 {A119R:G -> A118R:G: adjacent_3p downward } 0 10 {A118R:G -> A203R:C: pairing antiparallel cis Ww/Ww } 0 11 {A203R:C -> A118R:G: pairing antiparallel cis Ww/Ww } 0 12 {A119R:G -> A202R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 13 {A202R:U -> A119R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 14 {A202R:U -> A203R:C: adjacent_5p } 0 15 {A203R:C -> A202R:U: adjacent_3p } 0 16 {A203R:C -> A204R:C: adjacent_5p } 0 17 {A204R:C -> A203R:C: adjacent_3p } 0 18 {A204R:C -> A205R:U: adjacent_5p upward } 0 19 {A205R:U -> A204R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A117R:G 0 1 A118R:G 0 2 A119R:G 0 3 A120R:U 0 4 A201R:G 0 5 A202R:U 0 6 A203R:C 0 7 A204R:C 0 [Edges] 0 {A117R:G -> A118R:G: adjacent_5p upward } 0 1 {A118R:G -> A117R:G: adjacent_3p downward } 0 2 {A117R:G -> A204R:C: pairing antiparallel cis Ww/Ww } 0 3 {A204R:C -> A117R:G: pairing antiparallel cis Ww/Ww } 0 4 {A118R:G -> A119R:G: adjacent_5p upward } 0 5 {A119R:G -> A118R:G: adjacent_3p downward } 0 6 {A118R:G -> A203R:C: pairing antiparallel cis Ww/Ww } 0 7 {A203R:C -> A118R:G: pairing antiparallel cis Ww/Ww } 0 8 {A119R:G -> A120R:U: adjacent_5p upward } 0 9 {A120R:U -> A119R:G: adjacent_3p downward } 0 10 {A119R:G -> A202R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 11 {A202R:U -> A119R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 12 {A120R:U -> A201R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A201R:G -> A120R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A201R:G -> A202R:U: adjacent_5p upward } 0 15 {A202R:U -> A201R:G: adjacent_3p downward } 0 16 {A202R:U -> A203R:C: adjacent_5p } 0 17 {A203R:C -> A202R:U: adjacent_3p } 0 18 {A203R:C -> A204R:C: adjacent_5p } 0 19 {A204R:C -> A203R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A118R:G 0 1 A119R:G 0 2 A120R:U 0 3 A121R:C 0 4 A200R:G 0 5 A201R:G 0 6 A202R:U 0 7 A203R:C 0 [Edges] 0 {A118R:G -> A119R:G: adjacent_5p upward } 0 1 {A119R:G -> A118R:G: adjacent_3p downward } 0 2 {A118R:G -> A203R:C: pairing antiparallel cis Ww/Ww } 0 3 {A203R:C -> A118R:G: pairing antiparallel cis Ww/Ww } 0 4 {A119R:G -> A120R:U: adjacent_5p upward } 0 5 {A120R:U -> A119R:G: adjacent_3p downward } 0 6 {A119R:G -> A202R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 7 {A202R:U -> A119R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 8 {A120R:U -> A121R:C: adjacent_5p } 0 9 {A121R:C -> A120R:U: adjacent_3p } 0 10 {A120R:U -> A201R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A201R:G -> A120R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A121R:C -> A200R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A200R:G -> A121R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A121R:C -> A201R:G: outward } 0 15 {A201R:G -> A121R:C: outward } 0 16 {A200R:G -> A201R:G: adjacent_5p upward } 0 17 {A201R:G -> A200R:G: adjacent_3p downward } 0 18 {A201R:G -> A202R:U: adjacent_5p upward } 0 19 {A202R:U -> A201R:G: adjacent_3p downward } 0 20 {A202R:U -> A203R:C: adjacent_5p } 0 21 {A203R:C -> A202R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A126R:G 0 1 A127R:C 0 2 A128R:C 0 3 A129R:G 0 4 A193R:C 0 5 A194R:G 0 6 A195R:G 0 7 A196R:A 0 [Edges] 0 {A126R:G -> A127R:C: adjacent_5p upward } 0 1 {A127R:C -> A126R:G: adjacent_3p downward } 0 2 {A126R:G -> A196R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A196R:A -> A126R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A127R:C -> A128R:C: adjacent_5p upward } 0 5 {A128R:C -> A127R:C: adjacent_3p downward } 0 6 {A127R:C -> A195R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A195R:G -> A127R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A128R:C -> A129R:G: adjacent_5p upward } 0 9 {A129R:G -> A128R:C: adjacent_3p downward } 0 10 {A128R:C -> A194R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A194R:G -> A128R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A129R:G -> A193R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A193R:C -> A129R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A129R:G -> A194R:G: outward } 0 15 {A194R:G -> A129R:G: outward } 0 16 {A193R:C -> A194R:G: adjacent_5p upward } 0 17 {A194R:G -> A193R:C: adjacent_3p downward } 0 18 {A194R:G -> A195R:G: adjacent_5p upward } 0 19 {A195R:G -> A194R:G: adjacent_3p downward } 0 20 {A195R:G -> A196R:A: adjacent_5p upward } 0 21 {A196R:A -> A195R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A131R:U 0 1 A132R:C 0 2 A133R:A 0 3 A134R:G 0 4 A189R:C 0 5 A190R:U 0 6 A191R:G 0 7 A192R:A 0 [Edges] 0 {A131R:U -> A132R:C: adjacent_5p } 0 1 {A132R:C -> A131R:U: adjacent_3p } 0 2 {A131R:U -> A192R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A192R:A -> A131R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A132R:C -> A133R:A: adjacent_5p upward } 0 5 {A133R:A -> A132R:C: adjacent_3p downward } 0 6 {A132R:C -> A191R:G: pairing antiparallel cis Ww/Ww } 0 7 {A191R:G -> A132R:C: pairing antiparallel cis Ww/Ww } 0 8 {A133R:A -> A134R:G: adjacent_5p upward } 0 9 {A134R:G -> A133R:A: adjacent_3p downward } 0 10 {A133R:A -> A190R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A190R:U -> A133R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A133R:A -> A191R:G: outward } 0 13 {A191R:G -> A133R:A: outward } 0 14 {A134R:G -> A189R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A189R:C -> A134R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A189R:C -> A190R:U: adjacent_5p upward } 0 17 {A190R:U -> A189R:C: adjacent_3p downward } 0 18 {A190R:U -> A191R:G: adjacent_5p } 0 19 {A191R:G -> A190R:U: adjacent_3p } 0 20 {A191R:G -> A192R:A: adjacent_5p upward } 0 21 {A192R:A -> A191R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A139R:A 0 1 A140R:A 0 2 A141R:G 0 3 A142R:U 0 4 A161R:A 0 5 A162R:U 0 6 A163R:G 0 7 A164R:G 0 [Edges] 0 {A139R:A -> A140R:A: adjacent_5p upward } 0 1 {A140R:A -> A139R:A: adjacent_3p downward } 0 2 {A139R:A -> A164R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A164R:G -> A139R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A140R:A -> A141R:G: adjacent_5p upward } 0 5 {A141R:G -> A140R:A: adjacent_3p downward } 0 6 {A140R:A -> A163R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {A163R:G -> A140R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {A141R:G -> A142R:U: adjacent_5p upward } 0 9 {A142R:U -> A141R:G: adjacent_3p downward } 0 10 {A141R:G -> A162R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A162R:U -> A141R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A142R:U -> A161R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A161R:A -> A142R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A161R:A -> A162R:U: adjacent_5p upward } 0 15 {A162R:U -> A161R:A: adjacent_3p downward } 0 16 {A162R:U -> A163R:G: adjacent_5p upward } 0 17 {A163R:G -> A162R:U: adjacent_3p downward } 0 18 {A163R:G -> A164R:G: adjacent_5p upward } 0 19 {A164R:G -> A163R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A140R:A 0 1 A141R:G 0 2 A142R:U 0 3 A143R:C 0 4 A160R:G 0 5 A161R:A 0 6 A162R:U 0 7 A163R:G 0 [Edges] 0 {A140R:A -> A141R:G: adjacent_5p upward } 0 1 {A141R:G -> A140R:A: adjacent_3p downward } 0 2 {A140R:A -> A163R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A163R:G -> A140R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A141R:G -> A142R:U: adjacent_5p upward } 0 5 {A142R:U -> A141R:G: adjacent_3p downward } 0 6 {A141R:G -> A162R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A162R:U -> A141R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A142R:U -> A143R:C: adjacent_5p upward } 0 9 {A143R:C -> A142R:U: adjacent_3p downward } 0 10 {A142R:U -> A161R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A161R:A -> A142R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A143R:C -> A160R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A160R:G -> A143R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A160R:G -> A161R:A: adjacent_5p upward } 0 15 {A161R:A -> A160R:G: adjacent_3p downward } 0 16 {A161R:A -> A162R:U: adjacent_5p upward } 0 17 {A162R:U -> A161R:A: adjacent_3p downward } 0 18 {A162R:U -> A163R:G: adjacent_5p upward } 0 19 {A163R:G -> A162R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A141R:G 0 1 A142R:U 0 2 A143R:C 0 3 A144R:U 0 4 A159R:A 0 5 A160R:G 0 6 A161R:A 0 7 A162R:U 0 [Edges] 0 {A141R:G -> A142R:U: adjacent_5p upward } 0 1 {A142R:U -> A141R:G: adjacent_3p downward } 0 2 {A141R:G -> A162R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A162R:U -> A141R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A142R:U -> A143R:C: adjacent_5p upward } 0 5 {A143R:C -> A142R:U: adjacent_3p downward } 0 6 {A142R:U -> A161R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A161R:A -> A142R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A143R:C -> A144R:U: adjacent_5p upward } 0 9 {A144R:U -> A143R:C: adjacent_3p downward } 0 10 {A143R:C -> A160R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A160R:G -> A143R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A144R:U -> A159R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A159R:A -> A144R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A159R:A -> A160R:G: adjacent_5p upward } 0 15 {A160R:G -> A159R:A: adjacent_3p downward } 0 16 {A160R:G -> A161R:A: adjacent_5p upward } 0 17 {A161R:A -> A160R:G: adjacent_3p downward } 0 18 {A161R:A -> A162R:U: adjacent_5p upward } 0 19 {A162R:U -> A161R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A142R:U 0 1 A143R:C 0 2 A144R:U 0 3 A145R:C 0 4 A158R:G 0 5 A159R:A 0 6 A160R:G 0 7 A161R:A 0 [Edges] 0 {A142R:U -> A143R:C: adjacent_5p upward } 0 1 {A143R:C -> A142R:U: adjacent_3p downward } 0 2 {A142R:U -> A161R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A161R:A -> A142R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A143R:C -> A144R:U: adjacent_5p upward } 0 5 {A144R:U -> A143R:C: adjacent_3p downward } 0 6 {A143R:C -> A160R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A160R:G -> A143R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A144R:U -> A145R:C: adjacent_5p upward } 0 9 {A145R:C -> A144R:U: adjacent_3p downward } 0 10 {A144R:U -> A159R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A159R:A -> A144R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A145R:C -> A158R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A158R:G -> A145R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A158R:G -> A159R:A: adjacent_5p upward } 0 15 {A159R:A -> A158R:G: adjacent_3p downward } 0 16 {A159R:A -> A160R:G: adjacent_5p upward } 0 17 {A160R:G -> A159R:A: adjacent_3p downward } 0 18 {A160R:G -> A161R:A: adjacent_5p upward } 0 19 {A161R:A -> A160R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A143R:C 0 1 A144R:U 0 2 A145R:C 0 3 A146R:A 0 4 A157R:U 0 5 A158R:G 0 6 A159R:A 0 7 A160R:G 0 [Edges] 0 {A143R:C -> A144R:U: adjacent_5p upward } 0 1 {A144R:U -> A143R:C: adjacent_3p downward } 0 2 {A143R:C -> A160R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A160R:G -> A143R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A144R:U -> A145R:C: adjacent_5p upward } 0 5 {A145R:C -> A144R:U: adjacent_3p downward } 0 6 {A144R:U -> A159R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A159R:A -> A144R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A145R:C -> A146R:A: adjacent_5p upward } 0 9 {A146R:A -> A145R:C: adjacent_3p downward } 0 10 {A145R:C -> A158R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A158R:G -> A145R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A146R:A -> A157R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A157R:U -> A146R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A146R:A -> A158R:G: outward } 0 15 {A158R:G -> A146R:A: outward } 0 16 {A157R:U -> A158R:G: adjacent_5p } 0 17 {A158R:G -> A157R:U: adjacent_3p } 0 18 {A158R:G -> A159R:A: adjacent_5p upward } 0 19 {A159R:A -> A158R:G: adjacent_3p downward } 0 20 {A159R:A -> A160R:G: adjacent_5p upward } 0 21 {A160R:G -> A159R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A144R:U 0 1 A145R:C 0 2 A146R:A 0 3 A147R:G 0 4 A156R:U 0 5 A157R:U 0 6 A158R:G 0 7 A159R:A 0 [Edges] 0 {A144R:U -> A145R:C: adjacent_5p upward } 0 1 {A145R:C -> A144R:U: adjacent_3p downward } 0 2 {A144R:U -> A159R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A159R:A -> A144R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A145R:C -> A146R:A: adjacent_5p upward } 0 5 {A146R:A -> A145R:C: adjacent_3p downward } 0 6 {A145R:C -> A158R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A158R:G -> A145R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A146R:A -> A147R:G: adjacent_5p upward } 0 9 {A147R:G -> A146R:A: adjacent_3p downward } 0 10 {A146R:A -> A157R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A157R:U -> A146R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A146R:A -> A158R:G: outward } 0 13 {A158R:G -> A146R:A: outward } 0 14 {A147R:G -> A156R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A156R:U -> A147R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A156R:U -> A157R:U: adjacent_5p } 0 17 {A157R:U -> A156R:U: adjacent_3p } 0 18 {A157R:U -> A158R:G: adjacent_5p } 0 19 {A158R:G -> A157R:U: adjacent_3p } 0 20 {A158R:G -> A159R:A: adjacent_5p upward } 0 21 {A159R:A -> A158R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A145R:C 0 1 A146R:A 0 2 A147R:G 0 3 A148R:G 0 4 A155R:U 0 5 A156R:U 0 6 A157R:U 0 7 A158R:G 0 [Edges] 0 {A145R:C -> A146R:A: adjacent_5p upward } 0 1 {A146R:A -> A145R:C: adjacent_3p downward } 0 2 {A145R:C -> A158R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A158R:G -> A145R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A146R:A -> A147R:G: adjacent_5p upward } 0 5 {A147R:G -> A146R:A: adjacent_3p downward } 0 6 {A146R:A -> A157R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A157R:U -> A146R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A146R:A -> A158R:G: outward } 0 9 {A158R:G -> A146R:A: outward } 0 10 {A147R:G -> A148R:G: adjacent_5p upward } 0 11 {A148R:G -> A147R:G: adjacent_3p downward } 0 12 {A147R:G -> A156R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A156R:U -> A147R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A148R:G -> A155R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A155R:U -> A148R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A155R:U -> A156R:U: adjacent_5p } 0 17 {A156R:U -> A155R:U: adjacent_3p } 0 18 {A156R:U -> A157R:U: adjacent_5p } 0 19 {A157R:U -> A156R:U: adjacent_3p } 0 20 {A157R:U -> A158R:G: adjacent_5p } 0 21 {A158R:G -> A157R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A146R:A 0 1 A147R:G 0 2 A148R:G 0 3 A149R:G 0 4 A154R:C 0 5 A155R:U 0 6 A156R:U 0 7 A157R:U 0 [Edges] 0 {A146R:A -> A147R:G: adjacent_5p upward } 0 1 {A147R:G -> A146R:A: adjacent_3p downward } 0 2 {A146R:A -> A157R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A157R:U -> A146R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A147R:G -> A148R:G: adjacent_5p upward } 0 5 {A148R:G -> A147R:G: adjacent_3p downward } 0 6 {A147R:G -> A156R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A156R:U -> A147R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A148R:G -> A149R:G: adjacent_5p upward } 0 9 {A149R:G -> A148R:G: adjacent_3p downward } 0 10 {A148R:G -> A155R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A155R:U -> A148R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A149R:G -> A154R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A154R:C -> A149R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A154R:C -> A155R:U: adjacent_5p upward } 0 15 {A155R:U -> A154R:C: adjacent_3p downward } 0 16 {A155R:U -> A156R:U: adjacent_5p } 0 17 {A156R:U -> A155R:U: adjacent_3p } 0 18 {A156R:U -> A157R:U: adjacent_5p } 0 19 {A157R:U -> A156R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A147R:G 0 1 A148R:G 0 2 A149R:G 0 3 A150R:G 0 4 A153R:A 0 5 A154R:C 0 6 A155R:U 0 7 A156R:U 0 [Edges] 0 {A147R:G -> A148R:G: adjacent_5p upward } 0 1 {A148R:G -> A147R:G: adjacent_3p downward } 0 2 {A147R:G -> A156R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A156R:U -> A147R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A148R:G -> A149R:G: adjacent_5p upward } 0 5 {A149R:G -> A148R:G: adjacent_3p downward } 0 6 {A148R:G -> A155R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A155R:U -> A148R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A149R:G -> A150R:G: adjacent_5p upward } 0 9 {A150R:G -> A149R:G: adjacent_3p downward } 0 10 {A149R:G -> A154R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A154R:C -> A149R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A150R:G -> A153R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {A153R:A -> A150R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {A153R:A -> A154R:C: adjacent_5p upward } 0 15 {A154R:C -> A153R:A: adjacent_3p downward } 0 16 {A154R:C -> A155R:U: adjacent_5p upward } 0 17 {A155R:U -> A154R:C: adjacent_3p downward } 0 18 {A155R:U -> A156R:U: adjacent_5p } 0 19 {A156R:U -> A155R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A220R:G 0 1 A221R:U 0 2 A222R:C 0 3 A223R:C 0 4 A250R:G 0 5 A251R:G 0 6 A252R:A 0 7 A253R:U 0 [Edges] 0 {A220R:G -> A221R:U: adjacent_5p upward } 0 1 {A221R:U -> A220R:G: adjacent_3p downward } 0 2 {A220R:G -> A253R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A253R:U -> A220R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A221R:U -> A222R:C: adjacent_5p upward } 0 5 {A222R:C -> A221R:U: adjacent_3p downward } 0 6 {A221R:U -> A252R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A252R:A -> A221R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A222R:C -> A223R:C: adjacent_5p upward } 0 9 {A223R:C -> A222R:C: adjacent_3p downward } 0 10 {A222R:C -> A251R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A251R:G -> A222R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A223R:C -> A250R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A250R:G -> A223R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A250R:G -> A251R:G: adjacent_5p upward } 0 15 {A251R:G -> A250R:G: adjacent_3p downward } 0 16 {A251R:G -> A252R:A: adjacent_5p upward } 0 17 {A252R:A -> A251R:G: adjacent_3p downward } 0 18 {A252R:A -> A253R:U: adjacent_5p upward } 0 19 {A253R:U -> A252R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A227R:G 0 1 A228R:U 0 2 A229R:C 0 3 A230R:A 0 4 A244R:U 0 5 A245R:G 0 6 A246R:A 0 7 A247R:U 0 [Edges] 0 {A227R:G -> A228R:U: adjacent_5p upward } 0 1 {A228R:U -> A227R:G: adjacent_3p downward } 0 2 {A227R:G -> A247R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A247R:U -> A227R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A228R:U -> A229R:C: adjacent_5p } 0 5 {A229R:C -> A228R:U: adjacent_3p } 0 6 {A228R:U -> A246R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A246R:A -> A228R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A229R:C -> A230R:A: adjacent_5p upward } 0 9 {A230R:A -> A229R:C: adjacent_3p downward } 0 10 {A229R:C -> A245R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A245R:G -> A229R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A230R:A -> A244R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A244R:U -> A230R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A230R:A -> A245R:G: outward } 0 15 {A245R:G -> A230R:A: outward } 0 16 {A244R:U -> A245R:G: adjacent_5p upward } 0 17 {A245R:G -> A244R:U: adjacent_3p downward } 0 18 {A245R:G -> A246R:A: adjacent_5p upward } 0 19 {A246R:A -> A245R:G: adjacent_3p downward } 0 20 {A246R:A -> A247R:U: adjacent_5p upward } 0 21 {A247R:U -> A246R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A228R:U 0 1 A229R:C 0 2 A230R:A 0 3 A231R:A 0 4 A243R:U 0 5 A244R:U 0 6 A245R:G 0 7 A246R:A 0 [Edges] 0 {A228R:U -> A229R:C: adjacent_5p } 0 1 {A229R:C -> A228R:U: adjacent_3p } 0 2 {A228R:U -> A246R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A246R:A -> A228R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A229R:C -> A230R:A: adjacent_5p upward } 0 5 {A230R:A -> A229R:C: adjacent_3p downward } 0 6 {A229R:C -> A245R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A245R:G -> A229R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A230R:A -> A231R:A: adjacent_5p upward } 0 9 {A231R:A -> A230R:A: adjacent_3p downward } 0 10 {A230R:A -> A244R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A244R:U -> A230R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A230R:A -> A245R:G: outward } 0 13 {A245R:G -> A230R:A: outward } 0 14 {A231R:A -> A243R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A243R:U -> A231R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A243R:U -> A244R:U: adjacent_5p } 0 17 {A244R:U -> A243R:U: adjacent_3p } 0 18 {A244R:U -> A245R:G: adjacent_5p upward } 0 19 {A245R:G -> A244R:U: adjacent_3p downward } 0 20 {A245R:G -> A246R:A: adjacent_5p upward } 0 21 {A246R:A -> A245R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A229R:C 0 1 A230R:A 0 2 A231R:A 0 3 A232R:C 0 4 A242R:G 0 5 A243R:U 0 6 A244R:U 0 7 A245R:G 0 [Edges] 0 {A229R:C -> A230R:A: adjacent_5p upward } 0 1 {A230R:A -> A229R:C: adjacent_3p downward } 0 2 {A229R:C -> A245R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A245R:G -> A229R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A230R:A -> A231R:A: adjacent_5p upward } 0 5 {A231R:A -> A230R:A: adjacent_3p downward } 0 6 {A230R:A -> A244R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A244R:U -> A230R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A230R:A -> A245R:G: outward } 0 9 {A245R:G -> A230R:A: outward } 0 10 {A231R:A -> A232R:C: adjacent_5p upward } 0 11 {A232R:C -> A231R:A: adjacent_3p downward } 0 12 {A231R:A -> A243R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A243R:U -> A231R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A232R:C -> A242R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 15 {A242R:G -> A232R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 16 {A242R:G -> A243R:U: adjacent_5p upward } 0 17 {A243R:U -> A242R:G: adjacent_3p downward } 0 18 {A243R:U -> A244R:U: adjacent_5p } 0 19 {A244R:U -> A243R:U: adjacent_3p } 0 20 {A244R:U -> A245R:G: adjacent_5p upward } 0 21 {A245R:G -> A244R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A230R:A 0 1 A231R:A 0 2 A232R:C 0 3 A233R:A 0 4 A241R:U 0 5 A242R:G 0 6 A243R:U 0 7 A244R:U 0 [Edges] 0 {A230R:A -> A231R:A: adjacent_5p upward } 0 1 {A231R:A -> A230R:A: adjacent_3p downward } 0 2 {A230R:A -> A244R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A244R:U -> A230R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A231R:A -> A232R:C: adjacent_5p upward } 0 5 {A232R:C -> A231R:A: adjacent_3p downward } 0 6 {A231R:A -> A243R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A243R:U -> A231R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A232R:C -> A233R:A: adjacent_5p } 0 9 {A233R:A -> A232R:C: adjacent_3p } 0 10 {A232R:C -> A242R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {A242R:G -> A232R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {A233R:A -> A241R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A241R:U -> A233R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A233R:A -> A242R:G: outward } 0 15 {A242R:G -> A233R:A: outward } 0 16 {A241R:U -> A242R:G: adjacent_5p upward } 0 17 {A242R:G -> A241R:U: adjacent_3p downward } 0 18 {A242R:G -> A243R:U: adjacent_5p upward } 0 19 {A243R:U -> A242R:G: adjacent_3p downward } 0 20 {A243R:U -> A244R:U: adjacent_5p } 0 21 {A244R:U -> A243R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A231R:A 0 1 A232R:C 0 2 A233R:A 0 3 A234R:G 0 4 A240R:C 0 5 A241R:U 0 6 A242R:G 0 7 A243R:U 0 [Edges] 0 {A231R:A -> A232R:C: adjacent_5p upward } 0 1 {A232R:C -> A231R:A: adjacent_3p downward } 0 2 {A231R:A -> A243R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A243R:U -> A231R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A232R:C -> A233R:A: adjacent_5p } 0 5 {A233R:A -> A232R:C: adjacent_3p } 0 6 {A232R:C -> A242R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {A242R:G -> A232R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {A233R:A -> A234R:G: adjacent_5p upward } 0 9 {A234R:G -> A233R:A: adjacent_3p downward } 0 10 {A233R:A -> A241R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A241R:U -> A233R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A233R:A -> A242R:G: outward } 0 13 {A242R:G -> A233R:A: outward } 0 14 {A234R:G -> A240R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A240R:C -> A234R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A240R:C -> A241R:U: adjacent_5p upward } 0 17 {A241R:U -> A240R:C: adjacent_3p downward } 0 18 {A241R:U -> A242R:G: adjacent_5p upward } 0 19 {A242R:G -> A241R:U: adjacent_3p downward } 0 20 {A242R:G -> A243R:U: adjacent_5p upward } 0 21 {A243R:U -> A242R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B107R:U 0 1 B108R:G 0 2 B109R:G 0 3 B110R:G 0 4 B211R:C 0 5 B212R:C 0 6 B213R:C 0 7 B214R:A 0 [Edges] 0 {B107R:U -> B108R:G: adjacent_5p upward } 0 1 {B108R:G -> B107R:U: adjacent_3p downward } 0 2 {B107R:U -> B214R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B214R:A -> B107R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {B108R:G -> B109R:G: adjacent_5p upward } 0 5 {B109R:G -> B108R:G: adjacent_3p downward } 0 6 {B108R:G -> B213R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B213R:C -> B108R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B108R:G -> B214R:A: outward } 0 9 {B214R:A -> B108R:G: outward } 0 10 {B109R:G -> B110R:G: adjacent_5p upward } 0 11 {B110R:G -> B109R:G: adjacent_3p downward } 0 12 {B109R:G -> B212R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B212R:C -> B109R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B110R:G -> B211R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B211R:C -> B110R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B211R:C -> B212R:C: adjacent_5p upward } 0 17 {B212R:C -> B211R:C: adjacent_3p downward } 0 18 {B212R:C -> B213R:C: adjacent_5p } 0 19 {B213R:C -> B212R:C: adjacent_3p } 0 20 {B213R:C -> B214R:A: adjacent_5p } 0 21 {B214R:A -> B213R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B108R:G 0 1 B109R:G 0 2 B110R:G 0 3 B111R:G 0 4 B209R:C 0 5 B211R:C 0 6 B212R:C 0 7 B213R:C 0 [Edges] 0 {B108R:G -> B109R:G: adjacent_5p upward } 0 1 {B109R:G -> B108R:G: adjacent_3p downward } 0 2 {B108R:G -> B213R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B213R:C -> B108R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B109R:G -> B110R:G: adjacent_5p upward } 0 5 {B110R:G -> B109R:G: adjacent_3p downward } 0 6 {B109R:G -> B212R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B212R:C -> B109R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B110R:G -> B111R:G: adjacent_5p upward } 0 9 {B111R:G -> B110R:G: adjacent_3p downward } 0 10 {B110R:G -> B211R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B211R:C -> B110R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B111R:G -> B209R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B209R:C -> B111R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B209R:C -> B211R:C: adjacent_5p upward } 0 15 {B211R:C -> B209R:C: adjacent_3p downward } 0 16 {B211R:C -> B212R:C: adjacent_5p upward } 0 17 {B212R:C -> B211R:C: adjacent_3p downward } 0 18 {B212R:C -> B213R:C: adjacent_5p } 0 19 {B213R:C -> B212R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B109R:G 0 1 B110R:G 0 2 B111R:G 0 3 B112R:G 0 4 B208R:C 0 5 B209R:C 0 6 B211R:C 0 7 B212R:C 0 [Edges] 0 {B109R:G -> B110R:G: adjacent_5p upward } 0 1 {B110R:G -> B109R:G: adjacent_3p downward } 0 2 {B109R:G -> B212R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B212R:C -> B109R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B110R:G -> B111R:G: adjacent_5p upward } 0 5 {B111R:G -> B110R:G: adjacent_3p downward } 0 6 {B110R:G -> B211R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B211R:C -> B110R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B111R:G -> B112R:G: adjacent_5p upward } 0 9 {B112R:G -> B111R:G: adjacent_3p downward } 0 10 {B111R:G -> B209R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B209R:C -> B111R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B112R:G -> B208R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B208R:C -> B112R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B208R:C -> B209R:C: adjacent_5p } 0 15 {B209R:C -> B208R:C: adjacent_3p } 0 16 {B209R:C -> B211R:C: adjacent_5p upward } 0 17 {B211R:C -> B209R:C: adjacent_3p downward } 0 18 {B211R:C -> B212R:C: adjacent_5p upward } 0 19 {B212R:C -> B211R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B110R:G 0 1 B111R:G 0 2 B112R:G 0 3 B113R:A 0 4 B207R:A 0 5 B208R:C 0 6 B209R:C 0 7 B211R:C 0 [Edges] 0 {B110R:G -> B111R:G: adjacent_5p upward } 0 1 {B111R:G -> B110R:G: adjacent_3p downward } 0 2 {B110R:G -> B211R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B211R:C -> B110R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B111R:G -> B112R:G: adjacent_5p upward } 0 5 {B112R:G -> B111R:G: adjacent_3p downward } 0 6 {B111R:G -> B209R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B209R:C -> B111R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B112R:G -> B113R:A: adjacent_5p upward } 0 9 {B113R:A -> B112R:G: adjacent_3p downward } 0 10 {B112R:G -> B208R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B208R:C -> B112R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B113R:A -> B207R:A: pairing antiparallel trans 41 Ss/Hh } 0 13 {B207R:A -> B113R:A: pairing antiparallel trans 41 Hh/Ss } 0 14 {B207R:A -> B208R:C: adjacent_5p upward } 0 15 {B208R:C -> B207R:A: adjacent_3p downward } 0 16 {B208R:C -> B209R:C: adjacent_5p } 0 17 {B209R:C -> B208R:C: adjacent_3p } 0 18 {B209R:C -> B211R:C: adjacent_5p upward } 0 19 {B211R:C -> B209R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B111R:G 0 1 B112R:G 0 2 B113R:A 0 3 B114R:A 0 4 B206R:A 0 5 B207R:A 0 6 B208R:C 0 7 B209R:C 0 [Edges] 0 {B111R:G -> B112R:G: adjacent_5p upward } 0 1 {B112R:G -> B111R:G: adjacent_3p downward } 0 2 {B111R:G -> B209R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B209R:C -> B111R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B112R:G -> B113R:A: adjacent_5p upward } 0 5 {B113R:A -> B112R:G: adjacent_3p downward } 0 6 {B112R:G -> B208R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B208R:C -> B112R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B113R:A -> B114R:A: adjacent_5p } 0 9 {B114R:A -> B113R:A: adjacent_3p } 0 10 {B113R:A -> B206R:A: inward } 0 11 {B206R:A -> B113R:A: inward } 0 12 {B113R:A -> B207R:A: pairing antiparallel trans 41 Ss/Hh } 0 13 {B207R:A -> B113R:A: pairing antiparallel trans 41 Hh/Ss } 0 14 {B114R:A -> B206R:A: pairing antiparallel trans one_hbond 41 Hh/Ss } 0 15 {B206R:A -> B114R:A: pairing antiparallel trans one_hbond 41 Ss/Hh } 0 16 {B114R:A -> B207R:A: outward } 0 17 {B207R:A -> B114R:A: outward } 0 18 {B206R:A -> B207R:A: adjacent_5p } 0 19 {B207R:A -> B206R:A: adjacent_3p } 0 20 {B207R:A -> B208R:C: adjacent_5p upward } 0 21 {B208R:C -> B207R:A: adjacent_3p downward } 0 22 {B208R:C -> B209R:C: adjacent_5p } 0 23 {B209R:C -> B208R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 12 . . 3 . . 9 . 14 16 . . 4 . . 11 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 B116R:G 0 1 B117R:G 0 2 B118R:G 0 3 B119R:G 0 4 B202R:U 0 5 B203R:C 0 6 B204R:C 0 7 B205R:U 0 [Edges] 0 {B116R:G -> B117R:G: adjacent_5p upward } 0 1 {B117R:G -> B116R:G: adjacent_3p downward } 0 2 {B116R:G -> B205R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B205R:U -> B116R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B117R:G -> B118R:G: adjacent_5p upward } 0 5 {B118R:G -> B117R:G: adjacent_3p downward } 0 6 {B117R:G -> B204R:C: pairing antiparallel cis Ww/Ww } 0 7 {B204R:C -> B117R:G: pairing antiparallel cis Ww/Ww } 0 8 {B118R:G -> B119R:G: adjacent_5p upward } 0 9 {B119R:G -> B118R:G: adjacent_3p downward } 0 10 {B118R:G -> B203R:C: pairing antiparallel cis Ww/Ww } 0 11 {B203R:C -> B118R:G: pairing antiparallel cis Ww/Ww } 0 12 {B119R:G -> B202R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 13 {B202R:U -> B119R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 14 {B202R:U -> B203R:C: adjacent_5p } 0 15 {B203R:C -> B202R:U: adjacent_3p } 0 16 {B203R:C -> B204R:C: adjacent_5p } 0 17 {B204R:C -> B203R:C: adjacent_3p } 0 18 {B204R:C -> B205R:U: adjacent_5p upward } 0 19 {B205R:U -> B204R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B117R:G 0 1 B118R:G 0 2 B119R:G 0 3 B120R:U 0 4 B201R:G 0 5 B202R:U 0 6 B203R:C 0 7 B204R:C 0 [Edges] 0 {B117R:G -> B118R:G: adjacent_5p upward } 0 1 {B118R:G -> B117R:G: adjacent_3p downward } 0 2 {B117R:G -> B204R:C: pairing antiparallel cis Ww/Ww } 0 3 {B204R:C -> B117R:G: pairing antiparallel cis Ww/Ww } 0 4 {B118R:G -> B119R:G: adjacent_5p upward } 0 5 {B119R:G -> B118R:G: adjacent_3p downward } 0 6 {B118R:G -> B203R:C: pairing antiparallel cis Ww/Ww } 0 7 {B203R:C -> B118R:G: pairing antiparallel cis Ww/Ww } 0 8 {B119R:G -> B120R:U: adjacent_5p upward } 0 9 {B120R:U -> B119R:G: adjacent_3p downward } 0 10 {B119R:G -> B202R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 11 {B202R:U -> B119R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 12 {B120R:U -> B201R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {B201R:G -> B120R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {B201R:G -> B202R:U: adjacent_5p upward } 0 15 {B202R:U -> B201R:G: adjacent_3p downward } 0 16 {B202R:U -> B203R:C: adjacent_5p } 0 17 {B203R:C -> B202R:U: adjacent_3p } 0 18 {B203R:C -> B204R:C: adjacent_5p } 0 19 {B204R:C -> B203R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B118R:G 0 1 B119R:G 0 2 B120R:U 0 3 B121R:C 0 4 B200R:G 0 5 B201R:G 0 6 B202R:U 0 7 B203R:C 0 [Edges] 0 {B118R:G -> B119R:G: adjacent_5p upward } 0 1 {B119R:G -> B118R:G: adjacent_3p downward } 0 2 {B118R:G -> B203R:C: pairing antiparallel cis Ww/Ww } 0 3 {B203R:C -> B118R:G: pairing antiparallel cis Ww/Ww } 0 4 {B119R:G -> B120R:U: adjacent_5p upward } 0 5 {B120R:U -> B119R:G: adjacent_3p downward } 0 6 {B119R:G -> B202R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 7 {B202R:U -> B119R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 8 {B120R:U -> B121R:C: adjacent_5p } 0 9 {B121R:C -> B120R:U: adjacent_3p } 0 10 {B120R:U -> B201R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B201R:G -> B120R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {B121R:C -> B200R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B200R:G -> B121R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B121R:C -> B201R:G: outward } 0 15 {B201R:G -> B121R:C: outward } 0 16 {B200R:G -> B201R:G: adjacent_5p upward } 0 17 {B201R:G -> B200R:G: adjacent_3p downward } 0 18 {B201R:G -> B202R:U: adjacent_5p upward } 0 19 {B202R:U -> B201R:G: adjacent_3p downward } 0 20 {B202R:U -> B203R:C: adjacent_5p } 0 21 {B203R:C -> B202R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B126R:G 0 1 B127R:C 0 2 B128R:C 0 3 B129R:G 0 4 B193R:C 0 5 B194R:G 0 6 B195R:G 0 7 B196R:A 0 [Edges] 0 {B126R:G -> B127R:C: adjacent_5p upward } 0 1 {B127R:C -> B126R:G: adjacent_3p downward } 0 2 {B126R:G -> B196R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {B196R:A -> B126R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {B127R:C -> B128R:C: adjacent_5p upward } 0 5 {B128R:C -> B127R:C: adjacent_3p downward } 0 6 {B127R:C -> B195R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B195R:G -> B127R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B128R:C -> B129R:G: adjacent_5p upward } 0 9 {B129R:G -> B128R:C: adjacent_3p downward } 0 10 {B128R:C -> B194R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B194R:G -> B128R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B129R:G -> B193R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B193R:C -> B129R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B129R:G -> B194R:G: outward } 0 15 {B194R:G -> B129R:G: outward } 0 16 {B193R:C -> B194R:G: adjacent_5p upward } 0 17 {B194R:G -> B193R:C: adjacent_3p downward } 0 18 {B194R:G -> B195R:G: adjacent_5p upward } 0 19 {B195R:G -> B194R:G: adjacent_3p downward } 0 20 {B195R:G -> B196R:A: adjacent_5p upward } 0 21 {B196R:A -> B195R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B131R:U 0 1 B132R:C 0 2 B133R:A 0 3 B134R:G 0 4 B189R:C 0 5 B190R:U 0 6 B191R:G 0 7 B192R:A 0 [Edges] 0 {B131R:U -> B132R:C: adjacent_5p } 0 1 {B132R:C -> B131R:U: adjacent_3p } 0 2 {B131R:U -> B192R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B192R:A -> B131R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B132R:C -> B133R:A: adjacent_5p upward } 0 5 {B133R:A -> B132R:C: adjacent_3p downward } 0 6 {B132R:C -> B191R:G: pairing antiparallel cis Ww/Ww } 0 7 {B191R:G -> B132R:C: pairing antiparallel cis Ww/Ww } 0 8 {B133R:A -> B134R:G: adjacent_5p upward } 0 9 {B134R:G -> B133R:A: adjacent_3p downward } 0 10 {B133R:A -> B190R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B190R:U -> B133R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B133R:A -> B191R:G: outward } 0 13 {B191R:G -> B133R:A: outward } 0 14 {B134R:G -> B189R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B189R:C -> B134R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B189R:C -> B190R:U: adjacent_5p upward } 0 17 {B190R:U -> B189R:C: adjacent_3p downward } 0 18 {B190R:U -> B191R:G: adjacent_5p } 0 19 {B191R:G -> B190R:U: adjacent_3p } 0 20 {B191R:G -> B192R:A: adjacent_5p upward } 0 21 {B192R:A -> B191R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B139R:A 0 1 B140R:A 0 2 B141R:G 0 3 B142R:U 0 4 B161R:A 0 5 B162R:U 0 6 B163R:G 0 7 B164R:G 0 [Edges] 0 {B139R:A -> B140R:A: adjacent_5p upward } 0 1 {B140R:A -> B139R:A: adjacent_3p downward } 0 2 {B139R:A -> B164R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {B164R:G -> B139R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {B140R:A -> B141R:G: adjacent_5p upward } 0 5 {B141R:G -> B140R:A: adjacent_3p downward } 0 6 {B140R:A -> B163R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {B163R:G -> B140R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {B141R:G -> B142R:U: adjacent_5p upward } 0 9 {B142R:U -> B141R:G: adjacent_3p downward } 0 10 {B141R:G -> B162R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B162R:U -> B141R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {B142R:U -> B161R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B161R:A -> B142R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B161R:A -> B162R:U: adjacent_5p upward } 0 15 {B162R:U -> B161R:A: adjacent_3p downward } 0 16 {B162R:U -> B163R:G: adjacent_5p upward } 0 17 {B163R:G -> B162R:U: adjacent_3p downward } 0 18 {B163R:G -> B164R:G: adjacent_5p upward } 0 19 {B164R:G -> B163R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B140R:A 0 1 B141R:G 0 2 B142R:U 0 3 B143R:C 0 4 B160R:G 0 5 B161R:A 0 6 B162R:U 0 7 B163R:G 0 [Edges] 0 {B140R:A -> B141R:G: adjacent_5p upward } 0 1 {B141R:G -> B140R:A: adjacent_3p downward } 0 2 {B140R:A -> B163R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {B163R:G -> B140R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {B141R:G -> B142R:U: adjacent_5p upward } 0 5 {B142R:U -> B141R:G: adjacent_3p downward } 0 6 {B141R:G -> B162R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B162R:U -> B141R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B142R:U -> B143R:C: adjacent_5p upward } 0 9 {B143R:C -> B142R:U: adjacent_3p downward } 0 10 {B142R:U -> B161R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B161R:A -> B142R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B143R:C -> B160R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B160R:G -> B143R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B160R:G -> B161R:A: adjacent_5p upward } 0 15 {B161R:A -> B160R:G: adjacent_3p downward } 0 16 {B161R:A -> B162R:U: adjacent_5p upward } 0 17 {B162R:U -> B161R:A: adjacent_3p downward } 0 18 {B162R:U -> B163R:G: adjacent_5p upward } 0 19 {B163R:G -> B162R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B141R:G 0 1 B142R:U 0 2 B143R:C 0 3 B144R:U 0 4 B159R:A 0 5 B160R:G 0 6 B161R:A 0 7 B162R:U 0 [Edges] 0 {B141R:G -> B142R:U: adjacent_5p upward } 0 1 {B142R:U -> B141R:G: adjacent_3p downward } 0 2 {B141R:G -> B162R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B162R:U -> B141R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B142R:U -> B143R:C: adjacent_5p upward } 0 5 {B143R:C -> B142R:U: adjacent_3p downward } 0 6 {B142R:U -> B161R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B161R:A -> B142R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B143R:C -> B144R:U: adjacent_5p upward } 0 9 {B144R:U -> B143R:C: adjacent_3p downward } 0 10 {B143R:C -> B160R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B160R:G -> B143R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B144R:U -> B159R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B159R:A -> B144R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B159R:A -> B160R:G: adjacent_5p upward } 0 15 {B160R:G -> B159R:A: adjacent_3p downward } 0 16 {B160R:G -> B161R:A: adjacent_5p upward } 0 17 {B161R:A -> B160R:G: adjacent_3p downward } 0 18 {B161R:A -> B162R:U: adjacent_5p upward } 0 19 {B162R:U -> B161R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B142R:U 0 1 B143R:C 0 2 B144R:U 0 3 B145R:C 0 4 B158R:G 0 5 B159R:A 0 6 B160R:G 0 7 B161R:A 0 [Edges] 0 {B142R:U -> B143R:C: adjacent_5p upward } 0 1 {B143R:C -> B142R:U: adjacent_3p downward } 0 2 {B142R:U -> B161R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B161R:A -> B142R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B143R:C -> B144R:U: adjacent_5p upward } 0 5 {B144R:U -> B143R:C: adjacent_3p downward } 0 6 {B143R:C -> B160R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B160R:G -> B143R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B144R:U -> B145R:C: adjacent_5p upward } 0 9 {B145R:C -> B144R:U: adjacent_3p downward } 0 10 {B144R:U -> B159R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B159R:A -> B144R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B145R:C -> B158R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B158R:G -> B145R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B158R:G -> B159R:A: adjacent_5p upward } 0 15 {B159R:A -> B158R:G: adjacent_3p downward } 0 16 {B159R:A -> B160R:G: adjacent_5p upward } 0 17 {B160R:G -> B159R:A: adjacent_3p downward } 0 18 {B160R:G -> B161R:A: adjacent_5p upward } 0 19 {B161R:A -> B160R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B143R:C 0 1 B144R:U 0 2 B145R:C 0 3 B146R:A 0 4 B157R:U 0 5 B158R:G 0 6 B159R:A 0 7 B160R:G 0 [Edges] 0 {B143R:C -> B144R:U: adjacent_5p upward } 0 1 {B144R:U -> B143R:C: adjacent_3p downward } 0 2 {B143R:C -> B160R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B160R:G -> B143R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B144R:U -> B145R:C: adjacent_5p upward } 0 5 {B145R:C -> B144R:U: adjacent_3p downward } 0 6 {B144R:U -> B159R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B159R:A -> B144R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B145R:C -> B146R:A: adjacent_5p upward } 0 9 {B146R:A -> B145R:C: adjacent_3p downward } 0 10 {B145R:C -> B158R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B158R:G -> B145R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B146R:A -> B157R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B157R:U -> B146R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B146R:A -> B158R:G: outward } 0 15 {B158R:G -> B146R:A: outward } 0 16 {B157R:U -> B158R:G: adjacent_5p } 0 17 {B158R:G -> B157R:U: adjacent_3p } 0 18 {B158R:G -> B159R:A: adjacent_5p upward } 0 19 {B159R:A -> B158R:G: adjacent_3p downward } 0 20 {B159R:A -> B160R:G: adjacent_5p upward } 0 21 {B160R:G -> B159R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B144R:U 0 1 B145R:C 0 2 B146R:A 0 3 B147R:G 0 4 B156R:U 0 5 B157R:U 0 6 B158R:G 0 7 B159R:A 0 [Edges] 0 {B144R:U -> B145R:C: adjacent_5p upward } 0 1 {B145R:C -> B144R:U: adjacent_3p downward } 0 2 {B144R:U -> B159R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B159R:A -> B144R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B145R:C -> B146R:A: adjacent_5p upward } 0 5 {B146R:A -> B145R:C: adjacent_3p downward } 0 6 {B145R:C -> B158R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B158R:G -> B145R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B146R:A -> B147R:G: adjacent_5p upward } 0 9 {B147R:G -> B146R:A: adjacent_3p downward } 0 10 {B146R:A -> B157R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B157R:U -> B146R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B146R:A -> B158R:G: outward } 0 13 {B158R:G -> B146R:A: outward } 0 14 {B147R:G -> B156R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {B156R:U -> B147R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {B156R:U -> B157R:U: adjacent_5p } 0 17 {B157R:U -> B156R:U: adjacent_3p } 0 18 {B157R:U -> B158R:G: adjacent_5p } 0 19 {B158R:G -> B157R:U: adjacent_3p } 0 20 {B158R:G -> B159R:A: adjacent_5p upward } 0 21 {B159R:A -> B158R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B145R:C 0 1 B146R:A 0 2 B147R:G 0 3 B148R:G 0 4 B155R:U 0 5 B156R:U 0 6 B157R:U 0 7 B158R:G 0 [Edges] 0 {B145R:C -> B146R:A: adjacent_5p upward } 0 1 {B146R:A -> B145R:C: adjacent_3p downward } 0 2 {B145R:C -> B158R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B158R:G -> B145R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B146R:A -> B147R:G: adjacent_5p upward } 0 5 {B147R:G -> B146R:A: adjacent_3p downward } 0 6 {B146R:A -> B157R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B157R:U -> B146R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B146R:A -> B158R:G: outward } 0 9 {B158R:G -> B146R:A: outward } 0 10 {B147R:G -> B148R:G: adjacent_5p upward } 0 11 {B148R:G -> B147R:G: adjacent_3p downward } 0 12 {B147R:G -> B156R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B156R:U -> B147R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {B148R:G -> B155R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {B155R:U -> B148R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {B155R:U -> B156R:U: adjacent_5p } 0 17 {B156R:U -> B155R:U: adjacent_3p } 0 18 {B156R:U -> B157R:U: adjacent_5p } 0 19 {B157R:U -> B156R:U: adjacent_3p } 0 20 {B157R:U -> B158R:G: adjacent_5p } 0 21 {B158R:G -> B157R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B146R:A 0 1 B147R:G 0 2 B148R:G 0 3 B149R:G 0 4 B154R:C 0 5 B155R:U 0 6 B156R:U 0 7 B157R:U 0 [Edges] 0 {B146R:A -> B147R:G: adjacent_5p upward } 0 1 {B147R:G -> B146R:A: adjacent_3p downward } 0 2 {B146R:A -> B157R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B157R:U -> B146R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B147R:G -> B148R:G: adjacent_5p upward } 0 5 {B148R:G -> B147R:G: adjacent_3p downward } 0 6 {B147R:G -> B156R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B156R:U -> B147R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B148R:G -> B149R:G: adjacent_5p upward } 0 9 {B149R:G -> B148R:G: adjacent_3p downward } 0 10 {B148R:G -> B155R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B155R:U -> B148R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {B149R:G -> B154R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B154R:C -> B149R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B154R:C -> B155R:U: adjacent_5p upward } 0 15 {B155R:U -> B154R:C: adjacent_3p downward } 0 16 {B155R:U -> B156R:U: adjacent_5p } 0 17 {B156R:U -> B155R:U: adjacent_3p } 0 18 {B156R:U -> B157R:U: adjacent_5p } 0 19 {B157R:U -> B156R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B147R:G 0 1 B148R:G 0 2 B149R:G 0 3 B150R:G 0 4 B153R:A 0 5 B154R:C 0 6 B155R:U 0 7 B156R:U 0 [Edges] 0 {B147R:G -> B148R:G: adjacent_5p upward } 0 1 {B148R:G -> B147R:G: adjacent_3p downward } 0 2 {B147R:G -> B156R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B156R:U -> B147R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B148R:G -> B149R:G: adjacent_5p upward } 0 5 {B149R:G -> B148R:G: adjacent_3p downward } 0 6 {B148R:G -> B155R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B155R:U -> B148R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B149R:G -> B150R:G: adjacent_5p upward } 0 9 {B150R:G -> B149R:G: adjacent_3p downward } 0 10 {B149R:G -> B154R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B154R:C -> B149R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B150R:G -> B153R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {B153R:A -> B150R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {B153R:A -> B154R:C: adjacent_5p upward } 0 15 {B154R:C -> B153R:A: adjacent_3p downward } 0 16 {B154R:C -> B155R:U: adjacent_5p upward } 0 17 {B155R:U -> B154R:C: adjacent_3p downward } 0 18 {B155R:U -> B156R:U: adjacent_5p } 0 19 {B156R:U -> B155R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B220R:G 0 1 B221R:U 0 2 B222R:C 0 3 B223R:C 0 4 B250R:G 0 5 B251R:G 0 6 B252R:A 0 7 B253R:U 0 [Edges] 0 {B220R:G -> B221R:U: adjacent_5p upward } 0 1 {B221R:U -> B220R:G: adjacent_3p downward } 0 2 {B220R:G -> B253R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B253R:U -> B220R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B221R:U -> B222R:C: adjacent_5p upward } 0 5 {B222R:C -> B221R:U: adjacent_3p downward } 0 6 {B221R:U -> B252R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B252R:A -> B221R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B222R:C -> B223R:C: adjacent_5p upward } 0 9 {B223R:C -> B222R:C: adjacent_3p downward } 0 10 {B222R:C -> B251R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B251R:G -> B222R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B223R:C -> B250R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B250R:G -> B223R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B250R:G -> B251R:G: adjacent_5p upward } 0 15 {B251R:G -> B250R:G: adjacent_3p downward } 0 16 {B251R:G -> B252R:A: adjacent_5p upward } 0 17 {B252R:A -> B251R:G: adjacent_3p downward } 0 18 {B252R:A -> B253R:U: adjacent_5p upward } 0 19 {B253R:U -> B252R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B227R:G 0 1 B228R:U 0 2 B229R:C 0 3 B230R:A 0 4 B244R:U 0 5 B245R:G 0 6 B246R:A 0 7 B247R:U 0 [Edges] 0 {B227R:G -> B228R:U: adjacent_5p upward } 0 1 {B228R:U -> B227R:G: adjacent_3p downward } 0 2 {B227R:G -> B247R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B247R:U -> B227R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B228R:U -> B229R:C: adjacent_5p } 0 5 {B229R:C -> B228R:U: adjacent_3p } 0 6 {B228R:U -> B246R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B246R:A -> B228R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B229R:C -> B230R:A: adjacent_5p upward } 0 9 {B230R:A -> B229R:C: adjacent_3p downward } 0 10 {B229R:C -> B245R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B245R:G -> B229R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B230R:A -> B244R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B244R:U -> B230R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B230R:A -> B245R:G: outward } 0 15 {B245R:G -> B230R:A: outward } 0 16 {B244R:U -> B245R:G: adjacent_5p upward } 0 17 {B245R:G -> B244R:U: adjacent_3p downward } 0 18 {B245R:G -> B246R:A: adjacent_5p upward } 0 19 {B246R:A -> B245R:G: adjacent_3p downward } 0 20 {B246R:A -> B247R:U: adjacent_5p upward } 0 21 {B247R:U -> B246R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B228R:U 0 1 B229R:C 0 2 B230R:A 0 3 B231R:A 0 4 B243R:U 0 5 B244R:U 0 6 B245R:G 0 7 B246R:A 0 [Edges] 0 {B228R:U -> B229R:C: adjacent_5p } 0 1 {B229R:C -> B228R:U: adjacent_3p } 0 2 {B228R:U -> B246R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B246R:A -> B228R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B229R:C -> B230R:A: adjacent_5p upward } 0 5 {B230R:A -> B229R:C: adjacent_3p downward } 0 6 {B229R:C -> B245R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B245R:G -> B229R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B230R:A -> B231R:A: adjacent_5p upward } 0 9 {B231R:A -> B230R:A: adjacent_3p downward } 0 10 {B230R:A -> B244R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B244R:U -> B230R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B230R:A -> B245R:G: outward } 0 13 {B245R:G -> B230R:A: outward } 0 14 {B231R:A -> B243R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B243R:U -> B231R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B243R:U -> B244R:U: adjacent_5p } 0 17 {B244R:U -> B243R:U: adjacent_3p } 0 18 {B244R:U -> B245R:G: adjacent_5p upward } 0 19 {B245R:G -> B244R:U: adjacent_3p downward } 0 20 {B245R:G -> B246R:A: adjacent_5p upward } 0 21 {B246R:A -> B245R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B229R:C 0 1 B230R:A 0 2 B231R:A 0 3 B232R:C 0 4 B242R:G 0 5 B243R:U 0 6 B244R:U 0 7 B245R:G 0 [Edges] 0 {B229R:C -> B230R:A: adjacent_5p upward } 0 1 {B230R:A -> B229R:C: adjacent_3p downward } 0 2 {B229R:C -> B245R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B245R:G -> B229R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B230R:A -> B231R:A: adjacent_5p upward } 0 5 {B231R:A -> B230R:A: adjacent_3p downward } 0 6 {B230R:A -> B244R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B244R:U -> B230R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B230R:A -> B245R:G: outward } 0 9 {B245R:G -> B230R:A: outward } 0 10 {B231R:A -> B232R:C: adjacent_5p upward } 0 11 {B232R:C -> B231R:A: adjacent_3p downward } 0 12 {B231R:A -> B243R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B243R:U -> B231R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B232R:C -> B242R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 15 {B242R:G -> B232R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 16 {B242R:G -> B243R:U: adjacent_5p upward } 0 17 {B243R:U -> B242R:G: adjacent_3p downward } 0 18 {B243R:U -> B244R:U: adjacent_5p } 0 19 {B244R:U -> B243R:U: adjacent_3p } 0 20 {B244R:U -> B245R:G: adjacent_5p upward } 0 21 {B245R:G -> B244R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B230R:A 0 1 B231R:A 0 2 B232R:C 0 3 B233R:A 0 4 B241R:U 0 5 B242R:G 0 6 B243R:U 0 7 B244R:U 0 [Edges] 0 {B230R:A -> B231R:A: adjacent_5p upward } 0 1 {B231R:A -> B230R:A: adjacent_3p downward } 0 2 {B230R:A -> B244R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B244R:U -> B230R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B231R:A -> B232R:C: adjacent_5p upward } 0 5 {B232R:C -> B231R:A: adjacent_3p downward } 0 6 {B231R:A -> B243R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B243R:U -> B231R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B232R:C -> B233R:A: adjacent_5p } 0 9 {B233R:A -> B232R:C: adjacent_3p } 0 10 {B232R:C -> B242R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {B242R:G -> B232R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {B233R:A -> B241R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B241R:U -> B233R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B233R:A -> B242R:G: outward } 0 15 {B242R:G -> B233R:A: outward } 0 16 {B241R:U -> B242R:G: adjacent_5p upward } 0 17 {B242R:G -> B241R:U: adjacent_3p downward } 0 18 {B242R:G -> B243R:U: adjacent_5p upward } 0 19 {B243R:U -> B242R:G: adjacent_3p downward } 0 20 {B243R:U -> B244R:U: adjacent_5p } 0 21 {B244R:U -> B243R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B231R:A 0 1 B232R:C 0 2 B233R:A 0 3 B234R:G 0 4 B240R:C 0 5 B241R:U 0 6 B242R:G 0 7 B243R:U 0 [Edges] 0 {B231R:A -> B232R:C: adjacent_5p upward } 0 1 {B232R:C -> B231R:A: adjacent_3p downward } 0 2 {B231R:A -> B243R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B243R:U -> B231R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B232R:C -> B233R:A: adjacent_5p } 0 5 {B233R:A -> B232R:C: adjacent_3p } 0 6 {B232R:C -> B242R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {B242R:G -> B232R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {B233R:A -> B234R:G: adjacent_5p upward } 0 9 {B234R:G -> B233R:A: adjacent_3p downward } 0 10 {B233R:A -> B241R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B241R:U -> B233R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B233R:A -> B242R:G: outward } 0 13 {B242R:G -> B233R:A: outward } 0 14 {B234R:G -> B240R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B240R:C -> B234R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B240R:C -> B241R:U: adjacent_5p upward } 0 17 {B241R:U -> B240R:C: adjacent_3p downward } 0 18 {B241R:U -> B242R:G: adjacent_5p upward } 0 19 {B242R:G -> B241R:U: adjacent_3p downward } 0 20 {B242R:G -> B243R:U: adjacent_5p upward } 0 21 {B243R:U -> B242R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 B113R:A 0 1 B114R:C 0 2 B115R:A 0 3 B116R:C 0 4 B235R:G 0 5 B236R:U 0 6 B237R:G 0 7 B238R:U 0 [Edges] 0 {B113R:A -> B114R:C: adjacent_5p upward } 0 1 {B114R:C -> B113R:A: adjacent_3p downward } 0 2 {B113R:A -> B238R:U: pairing antiparallel cis XX Ww/Ws } 0 3 {B238R:U -> B113R:A: pairing antiparallel cis XX Ws/Ww } 0 4 {B114R:C -> B115R:A: adjacent_5p } 0 5 {B115R:A -> B114R:C: adjacent_3p } 0 6 {B114R:C -> B237R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B237R:G -> B114R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B115R:A -> B116R:C: adjacent_5p upward } 0 9 {B116R:C -> B115R:A: adjacent_3p downward } 0 10 {B115R:A -> B236R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B236R:U -> B115R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B115R:A -> B237R:G: outward } 0 13 {B237R:G -> B115R:A: outward } 0 14 {B116R:C -> B235R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B235R:G -> B116R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B235R:G -> B236R:U: adjacent_5p upward } 0 17 {B236R:U -> B235R:G: adjacent_3p downward } 0 18 {B236R:U -> B237R:G: adjacent_5p upward } 0 19 {B237R:G -> B236R:U: adjacent_3p downward } 0 20 {B237R:G -> B238R:U: adjacent_5p upward } 0 21 {B238R:U -> B237R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B114R:C 0 1 B115R:A 0 2 B116R:C 0 3 B117R:U 0 4 B234R:A 0 5 B235R:G 0 6 B236R:U 0 7 B237R:G 0 [Edges] 0 {B114R:C -> B115R:A: adjacent_5p } 0 1 {B115R:A -> B114R:C: adjacent_3p } 0 2 {B114R:C -> B237R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B237R:G -> B114R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B115R:A -> B116R:C: adjacent_5p upward } 0 5 {B116R:C -> B115R:A: adjacent_3p downward } 0 6 {B115R:A -> B236R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B236R:U -> B115R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B115R:A -> B237R:G: outward } 0 9 {B237R:G -> B115R:A: outward } 0 10 {B116R:C -> B117R:U: adjacent_5p upward } 0 11 {B117R:U -> B116R:C: adjacent_3p downward } 0 12 {B116R:C -> B235R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B235R:G -> B116R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B117R:U -> B234R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B234R:A -> B117R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B234R:A -> B235R:G: adjacent_5p upward } 0 17 {B235R:G -> B234R:A: adjacent_3p downward } 0 18 {B235R:G -> B236R:U: adjacent_5p upward } 0 19 {B236R:U -> B235R:G: adjacent_3p downward } 0 20 {B236R:U -> B237R:G: adjacent_5p upward } 0 21 {B237R:G -> B236R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B115R:A 0 1 B116R:C 0 2 B117R:U 0 3 B118R:A 0 4 B233R:U 0 5 B234R:A 0 6 B235R:G 0 7 B236R:U 0 [Edges] 0 {B115R:A -> B116R:C: adjacent_5p upward } 0 1 {B116R:C -> B115R:A: adjacent_3p downward } 0 2 {B115R:A -> B236R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B236R:U -> B115R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B116R:C -> B117R:U: adjacent_5p upward } 0 5 {B117R:U -> B116R:C: adjacent_3p downward } 0 6 {B116R:C -> B235R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B235R:G -> B116R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B117R:U -> B118R:A: adjacent_5p } 0 9 {B118R:A -> B117R:U: adjacent_3p } 0 10 {B117R:U -> B234R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B234R:A -> B117R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B118R:A -> B233R:U: pairing antiparallel cis one_hbond 48 Wh/Hw } 0 13 {B233R:U -> B118R:A: pairing antiparallel cis one_hbond 48 Hw/Wh } 0 14 {B118R:A -> B234R:A: outward } 0 15 {B234R:A -> B118R:A: outward } 0 16 {B233R:U -> B234R:A: adjacent_5p } 0 17 {B234R:A -> B233R:U: adjacent_3p } 0 18 {B234R:A -> B235R:G: adjacent_5p upward } 0 19 {B235R:G -> B234R:A: adjacent_3p downward } 0 20 {B235R:G -> B236R:U: adjacent_5p upward } 0 21 {B236R:U -> B235R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B120R:G 0 1 B121R:U 0 2 B122R:U 0 3 B123R:C 0 4 B227R:G 0 5 B228R:A 0 6 B229R:U 0 7 B230R:C 0 [Edges] 0 {B120R:G -> B121R:U: adjacent_5p upward } 0 1 {B121R:U -> B120R:G: adjacent_3p downward } 0 2 {B120R:G -> B230R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B230R:C -> B120R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B121R:U -> B122R:U: adjacent_5p upward } 0 5 {B122R:U -> B121R:U: adjacent_3p downward } 0 6 {B121R:U -> B229R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {B229R:U -> B121R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {B121R:U -> B230R:C: outward } 0 9 {B230R:C -> B121R:U: outward } 0 10 {B122R:U -> B123R:C: adjacent_5p } 0 11 {B123R:C -> B122R:U: adjacent_3p } 0 12 {B123R:C -> B227R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B227R:G -> B123R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B227R:G -> B228R:A: adjacent_5p upward } 0 15 {B228R:A -> B227R:G: adjacent_3p downward } 0 16 {B228R:A -> B229R:U: adjacent_5p upward } 0 17 {B229R:U -> B228R:A: adjacent_3p downward } 0 18 {B229R:U -> B230R:C: adjacent_5p } 0 19 {B230R:C -> B229R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 9 . . . . 19 . [GraphModel] [Vertices] 0 B121R:U 0 1 B122R:U 0 2 B123R:C 0 3 B124R:G 0 4 B226R:U 0 5 B227R:G 0 6 B228R:A 0 7 B229R:U 0 [Edges] 0 {B121R:U -> B122R:U: adjacent_5p upward } 0 1 {B122R:U -> B121R:U: adjacent_3p downward } 0 2 {B121R:U -> B229R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {B229R:U -> B121R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {B122R:U -> B123R:C: adjacent_5p } 0 5 {B123R:C -> B122R:U: adjacent_3p } 0 6 {B123R:C -> B124R:G: adjacent_5p } 0 7 {B124R:G -> B123R:C: adjacent_3p } 0 8 {B123R:C -> B227R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B227R:G -> B123R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B124R:G -> B226R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B226R:U -> B124R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {B124R:G -> B227R:G: outward } 0 13 {B227R:G -> B124R:G: outward } 0 14 {B226R:U -> B227R:G: adjacent_5p } 0 15 {B227R:G -> B226R:U: adjacent_3p } 0 16 {B227R:G -> B228R:A: adjacent_5p upward } 0 17 {B228R:A -> B227R:G: adjacent_3p downward } 0 18 {B228R:A -> B229R:U: adjacent_5p upward } 0 19 {B229R:U -> B228R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 12 . . 4 . . . 11 . 14 . . 5 . . 9 13 15 . 16 . 6 . . . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B123R:C 0 1 B124R:G 0 2 B125R:G 0 3 B126R:C 0 4 B224R:G 0 5 B225R:C 0 6 B226R:U 0 7 B227R:G 0 [Edges] 0 {B123R:C -> B124R:G: adjacent_5p } 0 1 {B124R:G -> B123R:C: adjacent_3p } 0 2 {B123R:C -> B227R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B227R:G -> B123R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B124R:G -> B125R:G: adjacent_5p upward } 0 5 {B125R:G -> B124R:G: adjacent_3p downward } 0 6 {B124R:G -> B226R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B226R:U -> B124R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B124R:G -> B227R:G: outward } 0 9 {B227R:G -> B124R:G: outward } 0 10 {B125R:G -> B126R:C: adjacent_5p upward } 0 11 {B126R:C -> B125R:G: adjacent_3p downward } 0 12 {B125R:G -> B225R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B225R:C -> B125R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B126R:C -> B224R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B224R:G -> B126R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B224R:G -> B225R:C: adjacent_5p upward } 0 17 {B225R:C -> B224R:G: adjacent_3p downward } 0 18 {B225R:C -> B226R:U: adjacent_5p upward } 0 19 {B226R:U -> B225R:C: adjacent_3p downward } 0 20 {B226R:U -> B227R:G: adjacent_5p } 0 21 {B227R:G -> B226R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B124R:G 0 1 B125R:G 0 2 B126R:C 0 3 B127R:A 0 4 B223R:U 0 5 B224R:G 0 6 B225R:C 0 7 B226R:U 0 [Edges] 0 {B124R:G -> B125R:G: adjacent_5p upward } 0 1 {B125R:G -> B124R:G: adjacent_3p downward } 0 2 {B124R:G -> B226R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B226R:U -> B124R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B125R:G -> B126R:C: adjacent_5p upward } 0 5 {B126R:C -> B125R:G: adjacent_3p downward } 0 6 {B125R:G -> B225R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B225R:C -> B125R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B126R:C -> B127R:A: adjacent_5p } 0 9 {B127R:A -> B126R:C: adjacent_3p } 0 10 {B126R:C -> B224R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B224R:G -> B126R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B127R:A -> B223R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 13 {B223R:U -> B127R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 14 {B127R:A -> B224R:G: outward } 0 15 {B224R:G -> B127R:A: outward } 0 16 {B223R:U -> B224R:G: adjacent_5p upward } 0 17 {B224R:G -> B223R:U: adjacent_3p downward } 0 18 {B224R:G -> B225R:C: adjacent_5p upward } 0 19 {B225R:C -> B224R:G: adjacent_3p downward } 0 20 {B225R:C -> B226R:U: adjacent_5p upward } 0 21 {B226R:U -> B225R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B125R:G 0 1 B126R:C 0 2 B127R:A 0 3 B128R:U 0 4 B222R:G 0 5 B223R:U 0 6 B224R:G 0 7 B225R:C 0 [Edges] 0 {B125R:G -> B126R:C: adjacent_5p upward } 0 1 {B126R:C -> B125R:G: adjacent_3p downward } 0 2 {B125R:G -> B225R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B225R:C -> B125R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B126R:C -> B127R:A: adjacent_5p } 0 5 {B127R:A -> B126R:C: adjacent_3p } 0 6 {B126R:C -> B224R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B224R:G -> B126R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B127R:A -> B128R:U: adjacent_5p upward } 0 9 {B128R:U -> B127R:A: adjacent_3p downward } 0 10 {B127R:A -> B223R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {B223R:U -> B127R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {B127R:A -> B224R:G: outward } 0 13 {B224R:G -> B127R:A: outward } 0 14 {B128R:U -> B222R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {B222R:G -> B128R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {B222R:G -> B223R:U: adjacent_5p upward } 0 17 {B223R:U -> B222R:G: adjacent_3p downward } 0 18 {B223R:U -> B224R:G: adjacent_5p upward } 0 19 {B224R:G -> B223R:U: adjacent_3p downward } 0 20 {B224R:G -> B225R:C: adjacent_5p upward } 0 21 {B225R:C -> B224R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B129R:C 0 1 B130R:A 0 2 B131R:A 0 3 B132R:U 0 4 B165R:G 0 5 B166R:U 0 6 B167R:U 0 7 B168R:G 0 [Edges] 0 {B129R:C -> B130R:A: adjacent_5p } 0 1 {B130R:A -> B129R:C: adjacent_3p } 0 2 {B129R:C -> B168R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B168R:G -> B129R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B130R:A -> B131R:A: adjacent_5p upward } 0 5 {B131R:A -> B130R:A: adjacent_3p downward } 0 6 {B130R:A -> B167R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B167R:U -> B130R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B130R:A -> B168R:G: outward } 0 9 {B168R:G -> B130R:A: outward } 0 10 {B131R:A -> B132R:U: adjacent_5p upward } 0 11 {B132R:U -> B131R:A: adjacent_3p downward } 0 12 {B131R:A -> B166R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B166R:U -> B131R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B132R:U -> B165R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {B165R:G -> B132R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {B165R:G -> B166R:U: adjacent_5p upward } 0 17 {B166R:U -> B165R:G: adjacent_3p downward } 0 18 {B166R:U -> B167R:U: adjacent_5p } 0 19 {B167R:U -> B166R:U: adjacent_3p } 0 20 {B167R:U -> B168R:G: adjacent_5p } 0 21 {B168R:G -> B167R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B130R:A 0 1 B131R:A 0 2 B132R:U 0 3 B133R:A 0 4 B164R:G 0 5 B165R:G 0 6 B166R:U 0 7 B167R:U 0 [Edges] 0 {B130R:A -> B131R:A: adjacent_5p upward } 0 1 {B131R:A -> B130R:A: adjacent_3p downward } 0 2 {B130R:A -> B167R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B167R:U -> B130R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B131R:A -> B132R:U: adjacent_5p upward } 0 5 {B132R:U -> B131R:A: adjacent_3p downward } 0 6 {B131R:A -> B166R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B166R:U -> B131R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B132R:U -> B133R:A: adjacent_5p } 0 9 {B133R:A -> B132R:U: adjacent_3p } 0 10 {B132R:U -> B165R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B165R:G -> B132R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {B133R:A -> B164R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {B164R:G -> B133R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {B133R:A -> B165R:G: outward } 0 15 {B165R:G -> B133R:A: outward } 0 16 {B164R:G -> B165R:G: adjacent_5p } 0 17 {B165R:G -> B164R:G: adjacent_3p } 0 18 {B165R:G -> B166R:U: adjacent_5p upward } 0 19 {B166R:U -> B165R:G: adjacent_3p downward } 0 20 {B166R:U -> B167R:U: adjacent_5p } 0 21 {B167R:U -> B166R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B132R:U 0 1 B133R:A 0 2 B134R:U 0 3 B135R:G 0 4 B162R:C 0 5 B163R:A 0 6 B164R:G 0 7 B165R:G 0 [Edges] 0 {B132R:U -> B133R:A: adjacent_5p } 0 1 {B133R:A -> B132R:U: adjacent_3p } 0 2 {B132R:U -> B165R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B165R:G -> B132R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {B133R:A -> B134R:U: adjacent_5p upward } 0 5 {B134R:U -> B133R:A: adjacent_3p downward } 0 6 {B133R:A -> B164R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {B164R:G -> B133R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {B133R:A -> B165R:G: outward } 0 9 {B165R:G -> B133R:A: outward } 0 10 {B134R:U -> B135R:G: adjacent_5p } 0 11 {B135R:G -> B134R:U: adjacent_3p } 0 12 {B135R:G -> B162R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B162R:C -> B135R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B135R:G -> B163R:A: outward } 0 15 {B163R:A -> B135R:G: outward } 0 16 {B162R:C -> B163R:A: adjacent_5p upward } 0 17 {B163R:A -> B162R:C: adjacent_3p downward } 0 18 {B163R:A -> B164R:G: adjacent_5p upward } 0 19 {B164R:G -> B163R:A: adjacent_3p downward } 0 20 {B164R:G -> B165R:G: adjacent_5p } 0 21 {B165R:G -> B164R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 14 . . 4 . . . 13 . 16 . . 5 . . . 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B133R:A 0 1 B134R:U 0 2 B135R:G 0 3 B136R:G 0 4 B161R:C 0 5 B162R:C 0 6 B163R:A 0 7 B164R:G 0 [Edges] 0 {B133R:A -> B134R:U: adjacent_5p upward } 0 1 {B134R:U -> B133R:A: adjacent_3p downward } 0 2 {B133R:A -> B164R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {B164R:G -> B133R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {B134R:U -> B135R:G: adjacent_5p } 0 5 {B135R:G -> B134R:U: adjacent_3p } 0 6 {B135R:G -> B136R:G: adjacent_5p upward } 0 7 {B136R:G -> B135R:G: adjacent_3p downward } 0 8 {B135R:G -> B162R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B162R:C -> B135R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B135R:G -> B163R:A: outward } 0 11 {B163R:A -> B135R:G: outward } 0 12 {B136R:G -> B161R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B161R:C -> B136R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B161R:C -> B162R:C: adjacent_5p } 0 15 {B162R:C -> B161R:C: adjacent_3p } 0 16 {B162R:C -> B163R:A: adjacent_5p upward } 0 17 {B163R:A -> B162R:C: adjacent_3p downward } 0 18 {B163R:A -> B164R:G: adjacent_5p upward } 0 19 {B164R:G -> B163R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 10 . 3 . . 7 . 12 . . . 4 . . . 13 . 14 . . 5 . . 9 . 15 . 16 . 6 . . 11 . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B135R:G 0 1 B136R:G 0 2 B137R:U 0 3 B138R:G 0 4 B159R:C 0 5 B160R:A 0 6 B161R:C 0 7 B162R:C 0 [Edges] 0 {B135R:G -> B136R:G: adjacent_5p upward } 0 1 {B136R:G -> B135R:G: adjacent_3p downward } 0 2 {B135R:G -> B162R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B162R:C -> B135R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B136R:G -> B137R:U: adjacent_5p upward } 0 5 {B137R:U -> B136R:G: adjacent_3p downward } 0 6 {B136R:G -> B161R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B161R:C -> B136R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B137R:U -> B138R:G: adjacent_5p } 0 9 {B138R:G -> B137R:U: adjacent_3p } 0 10 {B137R:U -> B160R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B160R:A -> B137R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B138R:G -> B159R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B159R:C -> B138R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B138R:G -> B160R:A: outward } 0 15 {B160R:A -> B138R:G: outward } 0 16 {B159R:C -> B160R:A: adjacent_5p } 0 17 {B160R:A -> B159R:C: adjacent_3p } 0 18 {B160R:A -> B161R:C: adjacent_5p upward } 0 19 {B161R:C -> B160R:A: adjacent_3p downward } 0 20 {B161R:C -> B162R:C: adjacent_5p } 0 21 {B162R:C -> B161R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B136R:G 0 1 B137R:U 0 2 B138R:G 0 3 B139R:A 0 4 B158R:C 0 5 B159R:C 0 6 B160R:A 0 7 B161R:C 0 [Edges] 0 {B136R:G -> B137R:U: adjacent_5p upward } 0 1 {B137R:U -> B136R:G: adjacent_3p downward } 0 2 {B136R:G -> B161R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B161R:C -> B136R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B137R:U -> B138R:G: adjacent_5p } 0 5 {B138R:G -> B137R:U: adjacent_3p } 0 6 {B137R:U -> B160R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B160R:A -> B137R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B138R:G -> B139R:A: adjacent_5p upward } 0 9 {B139R:A -> B138R:G: adjacent_3p downward } 0 10 {B138R:G -> B159R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B159R:C -> B138R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B138R:G -> B160R:A: outward } 0 13 {B160R:A -> B138R:G: outward } 0 14 {B139R:A -> B158R:C: pairing antiparallel cis one_hbond 78 Wh/Ww } 0 15 {B158R:C -> B139R:A: pairing antiparallel cis one_hbond 78 Ww/Wh } 0 16 {B158R:C -> B159R:C: adjacent_5p } 0 17 {B159R:C -> B158R:C: adjacent_3p } 0 18 {B159R:C -> B160R:A: adjacent_5p } 0 19 {B160R:A -> B159R:C: adjacent_3p } 0 20 {B160R:A -> B161R:C: adjacent_5p upward } 0 21 {B161R:C -> B160R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B137R:U 0 1 B138R:G 0 2 B139R:A 0 3 B140R:C 0 4 B157R:A 0 5 B158R:C 0 6 B159R:C 0 7 B160R:A 0 [Edges] 0 {B137R:U -> B138R:G: adjacent_5p } 0 1 {B138R:G -> B137R:U: adjacent_3p } 0 2 {B137R:U -> B160R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B160R:A -> B137R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B138R:G -> B139R:A: adjacent_5p upward } 0 5 {B139R:A -> B138R:G: adjacent_3p downward } 0 6 {B138R:G -> B159R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B159R:C -> B138R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B138R:G -> B160R:A: outward } 0 9 {B160R:A -> B138R:G: outward } 0 10 {B139R:A -> B140R:C: adjacent_5p upward } 0 11 {B140R:C -> B139R:A: adjacent_3p downward } 0 12 {B139R:A -> B158R:C: pairing antiparallel cis one_hbond 78 Wh/Ww } 0 13 {B158R:C -> B139R:A: pairing antiparallel cis one_hbond 78 Ww/Wh } 0 14 {B140R:C -> B157R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 15 {B157R:A -> B140R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 16 {B157R:A -> B158R:C: adjacent_5p upward } 0 17 {B158R:C -> B157R:A: adjacent_3p downward } 0 18 {B158R:C -> B159R:C: adjacent_5p } 0 19 {B159R:C -> B158R:C: adjacent_3p } 0 20 {B159R:C -> B160R:A: adjacent_5p } 0 21 {B160R:A -> B159R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B138R:G 0 1 B139R:A 0 2 B140R:C 0 3 B141R:C 0 4 B156R:G 0 5 B157R:A 0 6 B158R:C 0 7 B159R:C 0 [Edges] 0 {B138R:G -> B139R:A: adjacent_5p upward } 0 1 {B139R:A -> B138R:G: adjacent_3p downward } 0 2 {B138R:G -> B159R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B159R:C -> B138R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B139R:A -> B140R:C: adjacent_5p upward } 0 5 {B140R:C -> B139R:A: adjacent_3p downward } 0 6 {B139R:A -> B158R:C: pairing antiparallel cis one_hbond 78 Wh/Ww } 0 7 {B158R:C -> B139R:A: pairing antiparallel cis one_hbond 78 Ww/Wh } 0 8 {B140R:C -> B141R:C: adjacent_5p upward } 0 9 {B141R:C -> B140R:C: adjacent_3p downward } 0 10 {B140R:C -> B157R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 11 {B157R:A -> B140R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 12 {B141R:C -> B156R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B156R:G -> B141R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B156R:G -> B157R:A: adjacent_5p upward } 0 15 {B157R:A -> B156R:G: adjacent_3p downward } 0 16 {B157R:A -> B158R:C: adjacent_5p upward } 0 17 {B158R:C -> B157R:A: adjacent_3p downward } 0 18 {B158R:C -> B159R:C: adjacent_5p } 0 19 {B159R:C -> B158R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B139R:A 0 1 B140R:C 0 2 B141R:C 0 3 B142R:U 0 4 B155R:G 0 5 B156R:G 0 6 B157R:A 0 7 B158R:C 0 [Edges] 0 {B139R:A -> B140R:C: adjacent_5p upward } 0 1 {B140R:C -> B139R:A: adjacent_3p downward } 0 2 {B139R:A -> B158R:C: pairing antiparallel cis one_hbond 78 Wh/Ww } 0 3 {B158R:C -> B139R:A: pairing antiparallel cis one_hbond 78 Ww/Wh } 0 4 {B140R:C -> B141R:C: adjacent_5p upward } 0 5 {B141R:C -> B140R:C: adjacent_3p downward } 0 6 {B140R:C -> B157R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 7 {B157R:A -> B140R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 8 {B141R:C -> B142R:U: adjacent_5p upward } 0 9 {B142R:U -> B141R:C: adjacent_3p downward } 0 10 {B141R:C -> B156R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B156R:G -> B141R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B142R:U -> B155R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {B155R:G -> B142R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {B155R:G -> B156R:G: adjacent_5p upward } 0 15 {B156R:G -> B155R:G: adjacent_3p downward } 0 16 {B156R:G -> B157R:A: adjacent_5p upward } 0 17 {B157R:A -> B156R:G: adjacent_3p downward } 0 18 {B157R:A -> B158R:C: adjacent_5p upward } 0 19 {B158R:C -> B157R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B140R:C 0 1 B141R:C 0 2 B142R:U 0 3 B143R:C 0 4 B154R:G 0 5 B155R:G 0 6 B156R:G 0 7 B157R:A 0 [Edges] 0 {B140R:C -> B141R:C: adjacent_5p upward } 0 1 {B141R:C -> B140R:C: adjacent_3p downward } 0 2 {B140R:C -> B157R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 3 {B157R:A -> B140R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 4 {B141R:C -> B142R:U: adjacent_5p upward } 0 5 {B142R:U -> B141R:C: adjacent_3p downward } 0 6 {B141R:C -> B156R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B156R:G -> B141R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B142R:U -> B143R:C: adjacent_5p } 0 9 {B143R:C -> B142R:U: adjacent_3p } 0 10 {B142R:U -> B155R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B155R:G -> B142R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {B143R:C -> B154R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B154R:G -> B143R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B154R:G -> B155R:G: adjacent_5p upward } 0 15 {B155R:G -> B154R:G: adjacent_3p downward } 0 16 {B155R:G -> B156R:G: adjacent_5p upward } 0 17 {B156R:G -> B155R:G: adjacent_3p downward } 0 18 {B156R:G -> B157R:A: adjacent_5p upward } 0 19 {B157R:A -> B156R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B141R:C 0 1 B142R:U 0 2 B143R:C 0 3 B144R:C 0 4 B153R:G 0 5 B154R:G 0 6 B155R:G 0 7 B156R:G 0 [Edges] 0 {B141R:C -> B142R:U: adjacent_5p upward } 0 1 {B142R:U -> B141R:C: adjacent_3p downward } 0 2 {B141R:C -> B156R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B156R:G -> B141R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B142R:U -> B143R:C: adjacent_5p } 0 5 {B143R:C -> B142R:U: adjacent_3p } 0 6 {B142R:U -> B155R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B155R:G -> B142R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {B143R:C -> B144R:C: adjacent_5p } 0 9 {B144R:C -> B143R:C: adjacent_3p } 0 10 {B143R:C -> B154R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B154R:G -> B143R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B144R:C -> B153R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B153R:G -> B144R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B153R:G -> B154R:G: adjacent_5p upward } 0 15 {B154R:G -> B153R:G: adjacent_3p downward } 0 16 {B154R:G -> B155R:G: adjacent_5p upward } 0 17 {B155R:G -> B154R:G: adjacent_3p downward } 0 18 {B155R:G -> B156R:G: adjacent_5p upward } 0 19 {B156R:G -> B155R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B142R:U 0 1 B143R:C 0 2 B144R:C 0 3 B145R:C 0 4 B152R:G 0 5 B153R:G 0 6 B154R:G 0 7 B155R:G 0 [Edges] 0 {B142R:U -> B143R:C: adjacent_5p } 0 1 {B143R:C -> B142R:U: adjacent_3p } 0 2 {B142R:U -> B155R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B155R:G -> B142R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {B143R:C -> B144R:C: adjacent_5p } 0 5 {B144R:C -> B143R:C: adjacent_3p } 0 6 {B143R:C -> B154R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B154R:G -> B143R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B144R:C -> B145R:C: adjacent_5p } 0 9 {B145R:C -> B144R:C: adjacent_3p } 0 10 {B144R:C -> B153R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B153R:G -> B144R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B145R:C -> B152R:G: pairing antiparallel cis 128 Ww/Ww } 0 13 {B152R:G -> B145R:C: pairing antiparallel cis 128 Ww/Ww } 0 14 {B152R:G -> B153R:G: adjacent_5p upward } 0 15 {B153R:G -> B152R:G: adjacent_3p downward } 0 16 {B153R:G -> B154R:G: adjacent_5p upward } 0 17 {B154R:G -> B153R:G: adjacent_3p downward } 0 18 {B154R:G -> B155R:G: adjacent_5p upward } 0 19 {B155R:G -> B154R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B143R:C 0 1 B144R:C 0 2 B145R:C 0 3 B146R:G 0 4 B151R:C 0 5 B152R:G 0 6 B153R:G 0 7 B154R:G 0 [Edges] 0 {B143R:C -> B144R:C: adjacent_5p } 0 1 {B144R:C -> B143R:C: adjacent_3p } 0 2 {B143R:C -> B154R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B154R:G -> B143R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B144R:C -> B145R:C: adjacent_5p } 0 5 {B145R:C -> B144R:C: adjacent_3p } 0 6 {B144R:C -> B153R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B153R:G -> B144R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B145R:C -> B146R:G: adjacent_5p upward } 0 9 {B146R:G -> B145R:C: adjacent_3p downward } 0 10 {B145R:C -> B152R:G: pairing antiparallel cis 128 Ww/Ww } 0 11 {B152R:G -> B145R:C: pairing antiparallel cis 128 Ww/Ww } 0 12 {B146R:G -> B151R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B151R:C -> B146R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B146R:G -> B152R:G: outward } 0 15 {B152R:G -> B146R:G: outward } 0 16 {B151R:C -> B152R:G: adjacent_5p } 0 17 {B152R:G -> B151R:C: adjacent_3p } 0 18 {B152R:G -> B153R:G: adjacent_5p upward } 0 19 {B153R:G -> B152R:G: adjacent_3p downward } 0 20 {B153R:G -> B154R:G: adjacent_5p upward } 0 21 {B154R:G -> B153R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B177R:G 0 1 B178R:G 0 2 B179R:G 0 3 B180R:G 0 4 B217R:C 0 5 B218R:U 0 6 B219R:C 0 7 B220R:C 0 [Edges] 0 {B177R:G -> B178R:G: adjacent_5p upward } 0 1 {B178R:G -> B177R:G: adjacent_3p downward } 0 2 {B177R:G -> B220R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B220R:C -> B177R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B178R:G -> B179R:G: adjacent_5p upward } 0 5 {B179R:G -> B178R:G: adjacent_3p downward } 0 6 {B178R:G -> B219R:C: pairing antiparallel cis 128 Ww/Ww } 0 7 {B219R:C -> B178R:G: pairing antiparallel cis 128 Ww/Ww } 0 8 {B179R:G -> B180R:G: adjacent_5p upward } 0 9 {B180R:G -> B179R:G: adjacent_3p downward } 0 10 {B179R:G -> B218R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B218R:U -> B179R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {B180R:G -> B217R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B217R:C -> B180R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B217R:C -> B218R:U: adjacent_5p upward } 0 15 {B218R:U -> B217R:C: adjacent_3p downward } 0 16 {B218R:U -> B219R:C: adjacent_5p } 0 17 {B219R:C -> B218R:U: adjacent_3p } 0 18 {B219R:C -> B220R:C: adjacent_5p upward } 0 19 {B220R:C -> B219R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B178R:G 0 1 B179R:G 0 2 B180R:G 0 3 B181R:U 0 4 B216R:A 0 5 B217R:C 0 6 B218R:U 0 7 B219R:C 0 [Edges] 0 {B178R:G -> B179R:G: adjacent_5p upward } 0 1 {B179R:G -> B178R:G: adjacent_3p downward } 0 2 {B178R:G -> B219R:C: pairing antiparallel cis 128 Ww/Ww } 0 3 {B219R:C -> B178R:G: pairing antiparallel cis 128 Ww/Ww } 0 4 {B179R:G -> B180R:G: adjacent_5p upward } 0 5 {B180R:G -> B179R:G: adjacent_3p downward } 0 6 {B179R:G -> B218R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B218R:U -> B179R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B180R:G -> B181R:U: adjacent_5p upward } 0 9 {B181R:U -> B180R:G: adjacent_3p downward } 0 10 {B180R:G -> B217R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B217R:C -> B180R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B181R:U -> B216R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B216R:A -> B181R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B216R:A -> B217R:C: adjacent_5p upward } 0 15 {B217R:C -> B216R:A: adjacent_3p downward } 0 16 {B217R:C -> B218R:U: adjacent_5p upward } 0 17 {B218R:U -> B217R:C: adjacent_3p downward } 0 18 {B218R:U -> B219R:C: adjacent_5p } 0 19 {B219R:C -> B218R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B184R:A 0 1 B185R:C 0 2 B186R:C 0 3 B187R:G 0 4 B212R:C 0 5 B213R:A 0 6 B214R:A 0 7 B215R:A 0 [Edges] 0 {B184R:A -> B185R:C: adjacent_5p outward } 0 1 {B185R:C -> B184R:A: adjacent_3p outward } 0 2 {B184R:A -> B215R:A: pairing antiparallel trans one_hbond Ww/C8 } 0 3 {B215R:A -> B184R:A: pairing antiparallel trans one_hbond C8/Ww } 0 4 {B185R:C -> B186R:C: adjacent_5p upward } 0 5 {B186R:C -> B185R:C: adjacent_3p downward } 0 6 {B186R:C -> B187R:G: adjacent_5p } 0 7 {B187R:G -> B186R:C: adjacent_3p } 0 8 {B187R:G -> B212R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B212R:C -> B187R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B187R:G -> B213R:A: outward } 0 11 {B213R:A -> B187R:G: outward } 0 12 {B212R:C -> B213R:A: adjacent_5p upward } 0 13 {B213R:A -> B212R:C: adjacent_3p downward } 0 14 {B213R:A -> B214R:A: adjacent_5p upward } 0 15 {B214R:A -> B213R:A: adjacent_3p downward } 0 16 {B214R:A -> B215R:A: adjacent_5p inward } 0 17 {B215R:A -> B214R:A: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 10 . . 4 . . . 9 . 12 . . 5 . . . 11 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 B187R:G 0 1 B188R:G 0 2 B189R:C 0 3 B190R:C 0 4 B209R:G 0 5 B210R:G 0 6 B211R:U 0 7 B212R:C 0 [Edges] 0 {B187R:G -> B188R:G: adjacent_5p inward } 0 1 {B188R:G -> B187R:G: adjacent_3p inward } 0 2 {B187R:G -> B212R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B212R:C -> B187R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B188R:G -> B189R:C: adjacent_5p outward } 0 5 {B189R:C -> B188R:G: adjacent_3p outward } 0 6 {B188R:G -> B211R:U: pairing parallel cis one_hbond Bh/Ww } 0 7 {B211R:U -> B188R:G: pairing parallel cis one_hbond Ww/Bh } 0 8 {B189R:C -> B190R:C: adjacent_5p upward } 0 9 {B190R:C -> B189R:C: adjacent_3p downward } 0 10 {B189R:C -> B210R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B210R:G -> B189R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B190R:C -> B209R:G: pairing antiparallel cis 128 Ww/Ww } 0 13 {B209R:G -> B190R:C: pairing antiparallel cis 128 Ww/Ww } 0 14 {B209R:G -> B210R:G: adjacent_5p upward } 0 15 {B210R:G -> B209R:G: adjacent_3p downward } 0 16 {B210R:G -> B211R:U: adjacent_5p upward } 0 17 {B211R:U -> B210R:G: adjacent_3p downward } 0 18 {B211R:U -> B212R:C: adjacent_5p } 0 19 {B212R:C -> B211R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B188R:G 0 1 B189R:C 0 2 B190R:C 0 3 B191R:C 0 4 B208R:A 0 5 B209R:G 0 6 B210R:G 0 7 B211R:U 0 [Edges] 0 {B188R:G -> B189R:C: adjacent_5p outward } 0 1 {B189R:C -> B188R:G: adjacent_3p outward } 0 2 {B188R:G -> B211R:U: pairing parallel cis one_hbond Bh/Ww } 0 3 {B211R:U -> B188R:G: pairing parallel cis one_hbond Ww/Bh } 0 4 {B189R:C -> B190R:C: adjacent_5p upward } 0 5 {B190R:C -> B189R:C: adjacent_3p downward } 0 6 {B189R:C -> B210R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B210R:G -> B189R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B190R:C -> B191R:C: adjacent_5p upward } 0 9 {B191R:C -> B190R:C: adjacent_3p downward } 0 10 {B190R:C -> B209R:G: pairing antiparallel cis 128 Ww/Ww } 0 11 {B209R:G -> B190R:C: pairing antiparallel cis 128 Ww/Ww } 0 12 {B191R:C -> B208R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 13 {B208R:A -> B191R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 14 {B208R:A -> B209R:G: adjacent_5p upward } 0 15 {B209R:G -> B208R:A: adjacent_3p downward } 0 16 {B209R:G -> B210R:G: adjacent_5p upward } 0 17 {B210R:G -> B209R:G: adjacent_3p downward } 0 18 {B210R:G -> B211R:U: adjacent_5p upward } 0 19 {B211R:U -> B210R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B189R:C 0 1 B190R:C 0 2 B191R:C 0 3 B192R:A 0 4 B207R:C 0 5 B208R:A 0 6 B209R:G 0 7 B210R:G 0 [Edges] 0 {B189R:C -> B190R:C: adjacent_5p upward } 0 1 {B190R:C -> B189R:C: adjacent_3p downward } 0 2 {B189R:C -> B210R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B210R:G -> B189R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B190R:C -> B191R:C: adjacent_5p upward } 0 5 {B191R:C -> B190R:C: adjacent_3p downward } 0 6 {B190R:C -> B209R:G: pairing antiparallel cis 128 Ww/Ww } 0 7 {B209R:G -> B190R:C: pairing antiparallel cis 128 Ww/Ww } 0 8 {B191R:C -> B192R:A: adjacent_5p } 0 9 {B192R:A -> B191R:C: adjacent_3p } 0 10 {B191R:C -> B208R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 11 {B208R:A -> B191R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 12 {B192R:A -> B207R:C: pairing antiparallel trans 78 Hh/Ww } 0 13 {B207R:C -> B192R:A: pairing antiparallel trans 78 Ww/Hh } 0 14 {B192R:A -> B208R:A: outward } 0 15 {B208R:A -> B192R:A: outward } 0 16 {B207R:C -> B208R:A: adjacent_5p upward } 0 17 {B208R:A -> B207R:C: adjacent_3p downward } 0 18 {B208R:A -> B209R:G: adjacent_5p upward } 0 19 {B209R:G -> B208R:A: adjacent_3p downward } 0 20 {B209R:G -> B210R:G: adjacent_5p upward } 0 21 {B210R:G -> B209R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B190R:C 0 1 B191R:C 0 2 B192R:A 0 3 B193R:G 0 4 B206R:G 0 5 B207R:C 0 6 B208R:A 0 7 B209R:G 0 [Edges] 0 {B190R:C -> B191R:C: adjacent_5p upward } 0 1 {B191R:C -> B190R:C: adjacent_3p downward } 0 2 {B190R:C -> B209R:G: pairing antiparallel cis 128 Ww/Ww } 0 3 {B209R:G -> B190R:C: pairing antiparallel cis 128 Ww/Ww } 0 4 {B191R:C -> B192R:A: adjacent_5p } 0 5 {B192R:A -> B191R:C: adjacent_3p } 0 6 {B191R:C -> B208R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 7 {B208R:A -> B191R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 8 {B192R:A -> B193R:G: adjacent_5p upward } 0 9 {B193R:G -> B192R:A: adjacent_3p downward } 0 10 {B192R:A -> B207R:C: pairing antiparallel trans 78 Hh/Ww } 0 11 {B207R:C -> B192R:A: pairing antiparallel trans 78 Ww/Hh } 0 12 {B192R:A -> B208R:A: outward } 0 13 {B208R:A -> B192R:A: outward } 0 14 {B193R:G -> B206R:G: pairing antiparallel trans 115 Bh/Ww } 0 15 {B206R:G -> B193R:G: pairing antiparallel trans 115 Ww/Bh } 0 16 {B206R:G -> B207R:C: adjacent_5p upward } 0 17 {B207R:C -> B206R:G: adjacent_3p downward } 0 18 {B207R:C -> B208R:A: adjacent_5p upward } 0 19 {B208R:A -> B207R:C: adjacent_3p downward } 0 20 {B208R:A -> B209R:G: adjacent_5p upward } 0 21 {B209R:G -> B208R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B191R:C 0 1 B192R:A 0 2 B193R:G 0 3 B194R:G 0 4 B205R:A 0 5 B206R:G 0 6 B207R:C 0 7 B208R:A 0 [Edges] 0 {B191R:C -> B192R:A: adjacent_5p } 0 1 {B192R:A -> B191R:C: adjacent_3p } 0 2 {B191R:C -> B208R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 3 {B208R:A -> B191R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 4 {B192R:A -> B193R:G: adjacent_5p upward } 0 5 {B193R:G -> B192R:A: adjacent_3p downward } 0 6 {B192R:A -> B207R:C: pairing antiparallel trans 78 Hh/Ww } 0 7 {B207R:C -> B192R:A: pairing antiparallel trans 78 Ww/Hh } 0 8 {B192R:A -> B208R:A: outward } 0 9 {B208R:A -> B192R:A: outward } 0 10 {B193R:G -> B194R:G: adjacent_5p upward } 0 11 {B194R:G -> B193R:G: adjacent_3p downward } 0 12 {B193R:G -> B206R:G: pairing antiparallel trans 115 Bh/Ww } 0 13 {B206R:G -> B193R:G: pairing antiparallel trans 115 Ww/Bh } 0 14 {B194R:G -> B205R:A: pairing antiparallel cis VIII Ww/Ww } 0 15 {B205R:A -> B194R:G: pairing antiparallel cis VIII Ww/Ww } 0 16 {B205R:A -> B206R:G: adjacent_5p upward } 0 17 {B206R:G -> B205R:A: adjacent_3p downward } 0 18 {B206R:G -> B207R:C: adjacent_5p upward } 0 19 {B207R:C -> B206R:G: adjacent_3p downward } 0 20 {B207R:C -> B208R:A: adjacent_5p upward } 0 21 {B208R:A -> B207R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B192R:A 0 1 B193R:G 0 2 B194R:G 0 3 B195R:U 0 4 B204R:G 0 5 B205R:A 0 6 B206R:G 0 7 B207R:C 0 [Edges] 0 {B192R:A -> B193R:G: adjacent_5p upward } 0 1 {B193R:G -> B192R:A: adjacent_3p downward } 0 2 {B192R:A -> B207R:C: pairing antiparallel trans 78 Hh/Ww } 0 3 {B207R:C -> B192R:A: pairing antiparallel trans 78 Ww/Hh } 0 4 {B193R:G -> B194R:G: adjacent_5p upward } 0 5 {B194R:G -> B193R:G: adjacent_3p downward } 0 6 {B193R:G -> B206R:G: pairing antiparallel trans 115 Bh/Ww } 0 7 {B206R:G -> B193R:G: pairing antiparallel trans 115 Ww/Bh } 0 8 {B194R:G -> B195R:U: adjacent_5p upward } 0 9 {B195R:U -> B194R:G: adjacent_3p downward } 0 10 {B194R:G -> B205R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {B205R:A -> B194R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {B195R:U -> B204R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {B204R:G -> B195R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {B204R:G -> B205R:A: adjacent_5p upward } 0 15 {B205R:A -> B204R:G: adjacent_3p downward } 0 16 {B205R:A -> B206R:G: adjacent_5p upward } 0 17 {B206R:G -> B205R:A: adjacent_3p downward } 0 18 {B206R:G -> B207R:C: adjacent_5p upward } 0 19 {B207R:C -> B206R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B193R:G 0 1 B194R:G 0 2 B195R:U 0 3 B196R:C 0 4 B203R:G 0 5 B204R:G 0 6 B205R:A 0 7 B206R:G 0 [Edges] 0 {B193R:G -> B194R:G: adjacent_5p upward } 0 1 {B194R:G -> B193R:G: adjacent_3p downward } 0 2 {B193R:G -> B206R:G: pairing antiparallel trans 115 Bh/Ww } 0 3 {B206R:G -> B193R:G: pairing antiparallel trans 115 Ww/Bh } 0 4 {B194R:G -> B195R:U: adjacent_5p upward } 0 5 {B195R:U -> B194R:G: adjacent_3p downward } 0 6 {B194R:G -> B205R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {B205R:A -> B194R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {B195R:U -> B196R:C: adjacent_5p } 0 9 {B196R:C -> B195R:U: adjacent_3p } 0 10 {B195R:U -> B204R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B204R:G -> B195R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {B196R:C -> B203R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B203R:G -> B196R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B196R:C -> B204R:G: outward } 0 15 {B204R:G -> B196R:C: outward } 0 16 {B203R:G -> B204R:G: adjacent_5p upward } 0 17 {B204R:G -> B203R:G: adjacent_3p downward } 0 18 {B204R:G -> B205R:A: adjacent_5p upward } 0 19 {B205R:A -> B204R:G: adjacent_3p downward } 0 20 {B205R:A -> B206R:G: adjacent_5p upward } 0 21 {B206R:G -> B205R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B194R:G 0 1 B195R:U 0 2 B196R:C 0 3 B197R:G 0 4 B202R:C 0 5 B203R:G 0 6 B204R:G 0 7 B205R:A 0 [Edges] 0 {B194R:G -> B195R:U: adjacent_5p upward } 0 1 {B195R:U -> B194R:G: adjacent_3p downward } 0 2 {B194R:G -> B205R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {B205R:A -> B194R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {B195R:U -> B196R:C: adjacent_5p } 0 5 {B196R:C -> B195R:U: adjacent_3p } 0 6 {B195R:U -> B204R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B204R:G -> B195R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {B196R:C -> B197R:G: adjacent_5p } 0 9 {B197R:G -> B196R:C: adjacent_3p } 0 10 {B196R:C -> B203R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B203R:G -> B196R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B196R:C -> B204R:G: outward } 0 13 {B204R:G -> B196R:C: outward } 0 14 {B197R:G -> B202R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B202R:C -> B197R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B197R:G -> B203R:G: outward } 0 17 {B203R:G -> B197R:G: outward } 0 18 {B202R:C -> B203R:G: adjacent_5p upward } 0 19 {B203R:G -> B202R:C: adjacent_3p downward } 0 20 {B203R:G -> B204R:G: adjacent_5p upward } 0 21 {B204R:G -> B203R:G: adjacent_3p downward } 0 22 {B204R:G -> B205R:A: adjacent_5p upward } 0 23 {B205R:A -> B204R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 2R:C 0 1 3R:G 0 2 4R:A 0 3 5R:C 0 4 26R:G 0 5 27R:U 0 6 28R:C 0 7 29R:G 0 [Edges] 0 {2R:C -> 3R:G: adjacent_5p upward } 0 1 {3R:G -> 2R:C: adjacent_3p downward } 0 2 {2R:C -> 29R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {29R:G -> 2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:G -> 4R:A: adjacent_5p upward } 0 5 {4R:A -> 3R:G: adjacent_3p downward } 0 6 {3R:G -> 28R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {28R:C -> 3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {3R:G -> 29R:G: outward } 0 9 {29R:G -> 3R:G: outward } 0 10 {4R:A -> 5R:C: adjacent_5p upward } 0 11 {5R:C -> 4R:A: adjacent_3p downward } 0 12 {4R:A -> 27R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {27R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {5R:C -> 26R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {26R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {26R:G -> 27R:U: adjacent_5p upward } 0 17 {27R:U -> 26R:G: adjacent_3p downward } 0 18 {27R:U -> 28R:C: adjacent_5p } 0 19 {28R:C -> 27R:U: adjacent_3p } 0 20 {28R:C -> 29R:G: adjacent_5p upward } 0 21 {29R:G -> 28R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 3R:G 0 1 4R:A 0 2 5R:C 0 3 6R:C 0 4 25R:A 0 5 26R:G 0 6 27R:U 0 7 28R:C 0 [Edges] 0 {3R:G -> 4R:A: adjacent_5p upward } 0 1 {4R:A -> 3R:G: adjacent_3p downward } 0 2 {3R:G -> 28R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {28R:C -> 3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:A -> 5R:C: adjacent_5p upward } 0 5 {5R:C -> 4R:A: adjacent_3p downward } 0 6 {4R:A -> 27R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {27R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {5R:C -> 6R:C: adjacent_5p upward } 0 9 {6R:C -> 5R:C: adjacent_3p downward } 0 10 {5R:C -> 26R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {26R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {6R:C -> 25R:A: pairing antiparallel cis 75 Ww/Ww } 0 13 {25R:A -> 6R:C: pairing antiparallel cis 75 Ww/Ww } 0 14 {25R:A -> 26R:G: adjacent_5p upward } 0 15 {26R:G -> 25R:A: adjacent_3p downward } 0 16 {26R:G -> 27R:U: adjacent_5p upward } 0 17 {27R:U -> 26R:G: adjacent_3p downward } 0 18 {27R:U -> 28R:C: adjacent_5p } 0 19 {28R:C -> 27R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 10R:C 0 1 11R:C 0 2 12R:A 0 3 13R:G 0 4 20R:U 0 5 21R:U 0 6 22R:G 0 7 23R:G 0 [Edges] 0 {10R:C -> 11R:C: adjacent_5p } 0 1 {11R:C -> 10R:C: adjacent_3p } 0 2 {10R:C -> 23R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {23R:G -> 10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {11R:C -> 12R:A: adjacent_5p } 0 5 {12R:A -> 11R:C: adjacent_3p } 0 6 {11R:C -> 22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {22R:G -> 11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {11R:C -> 23R:G: outward } 0 9 {23R:G -> 11R:C: outward } 0 10 {12R:A -> 13R:G: adjacent_5p upward } 0 11 {13R:G -> 12R:A: adjacent_3p downward } 0 12 {12R:A -> 21R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {21R:U -> 12R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {12R:A -> 22R:G: outward } 0 15 {22R:G -> 12R:A: outward } 0 16 {13R:G -> 20R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 17 {20R:U -> 13R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 18 {13R:G -> 21R:U: outward } 0 19 {21R:U -> 13R:G: outward } 0 20 {20R:U -> 21R:U: adjacent_5p } 0 21 {21R:U -> 20R:U: adjacent_3p } 0 22 {21R:U -> 22R:G: adjacent_5p } 0 23 {22R:G -> 21R:U: adjacent_3p } 0 24 {22R:G -> 23R:G: adjacent_5p upward } 0 25 {23R:G -> 22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 18 . . 4 . . . 17 . 20 . . 5 . . 13 19 21 . 22 . 6 . 7 15 . . 23 . 24 7 3 9 . . . . 25 . [GraphModel] [Vertices] 0 11R:C 0 1 12R:A 0 2 13R:G 0 3 14R:C 0 4 19R:G 0 5 20R:U 0 6 21R:U 0 7 22R:G 0 [Edges] 0 {11R:C -> 12R:A: adjacent_5p } 0 1 {12R:A -> 11R:C: adjacent_3p } 0 2 {11R:C -> 22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {22R:G -> 11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {12R:A -> 13R:G: adjacent_5p upward } 0 5 {13R:G -> 12R:A: adjacent_3p downward } 0 6 {12R:A -> 21R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {21R:U -> 12R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {12R:A -> 22R:G: outward } 0 9 {22R:G -> 12R:A: outward } 0 10 {13R:G -> 14R:C: adjacent_5p upward } 0 11 {14R:C -> 13R:G: adjacent_3p downward } 0 12 {13R:G -> 20R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {20R:U -> 13R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {13R:G -> 21R:U: outward } 0 15 {21R:U -> 13R:G: outward } 0 16 {14R:C -> 19R:G: pairing antiparallel cis XIX Ww/Ww } 0 17 {19R:G -> 14R:C: pairing antiparallel cis XIX Ww/Ww } 0 18 {19R:G -> 20R:U: adjacent_5p upward } 0 19 {20R:U -> 19R:G: adjacent_3p downward } 0 20 {20R:U -> 21R:U: adjacent_5p } 0 21 {21R:U -> 20R:U: adjacent_3p } 0 22 {21R:U -> 22R:G: adjacent_5p } 0 23 {22R:G -> 21R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:G 0 3 A5R:U 0 4 B6R:A 0 5 B7R:C 0 6 B8R:A 0 7 B9R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B9R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B9R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> B8R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B8R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B7R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> B8R:A: outward } 0 13 {B8R:A -> A4R:G: outward } 0 14 {A5R:U -> B6R:A: pairing antiparallel cis Ws/Ww } 0 15 {B6R:A -> A5R:U: pairing antiparallel cis Ww/Ws } 0 16 {B6R:A -> B7R:C: adjacent_5p upward } 0 17 {B7R:C -> B6R:A: adjacent_3p downward } 0 18 {B7R:C -> B8R:A: adjacent_5p upward } 0 19 {B8R:A -> B7R:C: adjacent_3p downward } 0 20 {B8R:A -> B9R:C: adjacent_5p upward } 0 21 {B9R:C -> B8R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:A 0 2 A7R:G 0 3 A8R:U 0 4 B2R:A 0 5 B3R:C 0 6 B4R:U 0 7 B5R:A 0 [Edges] 0 {A5R:U -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:U: adjacent_3p downward } 0 2 {A5R:U -> B5R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B5R:A -> A5R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A6R:A -> A7R:G: adjacent_5p upward } 0 5 {A7R:G -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B4R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:A -> B5R:A: outward } 0 9 {B5R:A -> A6R:A: outward } 0 10 {A7R:G -> A8R:U: adjacent_5p upward } 0 11 {A8R:U -> A7R:G: adjacent_3p downward } 0 12 {A7R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B3R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A8R:U -> B2R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B2R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B2R:A -> B3R:C: adjacent_5p upward } 0 17 {B3R:C -> B2R:A: adjacent_3p downward } 0 18 {B3R:C -> B4R:U: adjacent_5p upward } 0 19 {B4R:U -> B3R:C: adjacent_3p downward } 0 20 {B4R:U -> B5R:A: adjacent_5p } 0 21 {B5R:A -> B4R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:C 0 2 A6R:A 0 3 A7R:G 0 4 B18R:G 0 5 B19R:C 0 6 B20R:A 0 7 B21R:G 0 [Edges] 0 {A4R:U -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:U: adjacent_3p downward } 0 2 {A4R:U -> B21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B21R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A5R:C -> A6R:A: adjacent_5p } 0 5 {A6R:A -> A5R:C: adjacent_3p } 0 6 {A5R:C -> B18R:G: inward } 0 7 {B18R:G -> A5R:C: inward } 0 8 {A6R:A -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:A: adjacent_3p downward } 0 10 {A6R:A -> B19R:C: pairing antiparallel trans XXV Hh/Ww } 0 11 {B19R:C -> A6R:A: pairing antiparallel trans XXV Ww/Hh } 0 12 {A6R:A -> B20R:A: outward } 0 13 {B20R:A -> A6R:A: outward } 0 14 {A7R:G -> B18R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 15 {B18R:G -> A7R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 16 {B18R:G -> B19R:C: adjacent_5p } 0 17 {B19R:C -> B18R:G: adjacent_3p } 0 18 {B19R:C -> B20R:A: adjacent_5p upward } 0 19 {B20R:A -> B19R:C: adjacent_3p downward } 0 20 {B20R:A -> B21R:G: adjacent_5p upward } 0 21 {B21R:G -> B20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . 7 . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . . 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:G 0 2 A8R:G 0 3 A9R:U 0 4 B16R:A 0 5 B17R:A 0 6 B18R:G 0 7 B19R:C 0 [Edges] 0 {A6R:A -> A7R:G: adjacent_5p upward } 0 1 {A7R:G -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> B19R:C: pairing antiparallel trans XXV Hh/Ww } 0 3 {B19R:C -> A6R:A: pairing antiparallel trans XXV Ww/Hh } 0 4 {A7R:G -> A8R:G: adjacent_5p upward } 0 5 {A8R:G -> A7R:G: adjacent_3p downward } 0 6 {A7R:G -> B18R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 7 {B18R:G -> A7R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 8 {A8R:G -> A9R:U: adjacent_5p upward } 0 9 {A9R:U -> A8R:G: adjacent_3p downward } 0 10 {A8R:G -> B17R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {B17R:A -> A8R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {A9R:U -> B16R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B16R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B16R:A -> B17R:A: adjacent_5p upward } 0 15 {B17R:A -> B16R:A: adjacent_3p downward } 0 16 {B17R:A -> B18R:G: adjacent_5p upward } 0 17 {B18R:G -> B17R:A: adjacent_3p downward } 0 18 {B18R:G -> B19R:C: adjacent_5p } 0 19 {B19R:C -> B18R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:G 0 2 A9R:U 0 3 A10R:C 0 4 B15R:G 0 5 B16R:A 0 6 B17R:A 0 7 B18R:G 0 [Edges] 0 {A7R:G -> A8R:G: adjacent_5p upward } 0 1 {A8R:G -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> B18R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 3 {B18R:G -> A7R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 4 {A8R:G -> A9R:U: adjacent_5p upward } 0 5 {A9R:U -> A8R:G: adjacent_3p downward } 0 6 {A8R:G -> B17R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {B17R:A -> A8R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A9R:U -> A10R:C: adjacent_5p } 0 9 {A10R:C -> A9R:U: adjacent_3p } 0 10 {A9R:U -> B16R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B16R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A10R:C -> B15R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B15R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B15R:G -> B16R:A: adjacent_5p upward } 0 15 {B16R:A -> B15R:G: adjacent_3p downward } 0 16 {B16R:A -> B17R:A: adjacent_5p upward } 0 17 {B17R:A -> B16R:A: adjacent_3p downward } 0 18 {B17R:A -> B18R:G: adjacent_5p upward } 0 19 {B18R:G -> B17R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A16R:G 0 1 A17R:G 0 2 A18R:C 0 3 A19R:C 0 4 A43R:G 0 5 A44R:G 0 6 A45R:C 0 7 A46R:C 0 [Edges] 0 {A16R:G -> A17R:G: adjacent_5p upward } 0 1 {A17R:G -> A16R:G: adjacent_3p downward } 0 2 {A16R:G -> A46R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A46R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A17R:G -> A18R:C: adjacent_5p upward } 0 5 {A18R:C -> A17R:G: adjacent_3p downward } 0 6 {A17R:G -> A45R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A45R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A18R:C -> A19R:C: adjacent_5p upward } 0 9 {A19R:C -> A18R:C: adjacent_3p downward } 0 10 {A18R:C -> A44R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A44R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A19R:C -> A43R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A43R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A43R:G -> A44R:G: adjacent_5p upward } 0 15 {A44R:G -> A43R:G: adjacent_3p downward } 0 16 {A44R:G -> A45R:C: adjacent_5p upward } 0 17 {A45R:C -> A44R:G: adjacent_3p downward } 0 18 {A45R:C -> A46R:C: adjacent_5p } 0 19 {A46R:C -> A45R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A17R:G 0 1 A18R:C 0 2 A19R:C 0 3 A20R:A 0 4 A42R:U 0 5 A43R:G 0 6 A44R:G 0 7 A45R:C 0 [Edges] 0 {A17R:G -> A18R:C: adjacent_5p upward } 0 1 {A18R:C -> A17R:G: adjacent_3p downward } 0 2 {A17R:G -> A45R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A45R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A18R:C -> A19R:C: adjacent_5p upward } 0 5 {A19R:C -> A18R:C: adjacent_3p downward } 0 6 {A18R:C -> A44R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A44R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A19R:C -> A20R:A: adjacent_5p } 0 9 {A20R:A -> A19R:C: adjacent_3p } 0 10 {A19R:C -> A43R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A43R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A20R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A42R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A42R:U -> A43R:G: adjacent_5p } 0 15 {A43R:G -> A42R:U: adjacent_3p } 0 16 {A43R:G -> A44R:G: adjacent_5p upward } 0 17 {A44R:G -> A43R:G: adjacent_3p downward } 0 18 {A44R:G -> A45R:C: adjacent_5p upward } 0 19 {A45R:C -> A44R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A18R:C 0 1 A19R:C 0 2 A20R:A 0 3 A21R:G 0 4 A41R:C 0 5 A42R:U 0 6 A43R:G 0 7 A44R:G 0 [Edges] 0 {A18R:C -> A19R:C: adjacent_5p upward } 0 1 {A19R:C -> A18R:C: adjacent_3p downward } 0 2 {A18R:C -> A44R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A44R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A19R:C -> A20R:A: adjacent_5p } 0 5 {A20R:A -> A19R:C: adjacent_3p } 0 6 {A19R:C -> A43R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A43R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A20R:A -> A21R:G: adjacent_5p upward } 0 9 {A21R:G -> A20R:A: adjacent_3p downward } 0 10 {A20R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A42R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A21R:G -> A41R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A41R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A41R:C -> A42R:U: adjacent_5p } 0 15 {A42R:U -> A41R:C: adjacent_3p } 0 16 {A42R:U -> A43R:G: adjacent_5p } 0 17 {A43R:G -> A42R:U: adjacent_3p } 0 18 {A43R:G -> A44R:G: adjacent_5p upward } 0 19 {A44R:G -> A43R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A19R:C 0 1 A20R:A 0 2 A21R:G 0 3 A22R:A 0 4 A40R:U 0 5 A41R:C 0 6 A42R:U 0 7 A43R:G 0 [Edges] 0 {A19R:C -> A20R:A: adjacent_5p } 0 1 {A20R:A -> A19R:C: adjacent_3p } 0 2 {A19R:C -> A43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A43R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A20R:A -> A21R:G: adjacent_5p upward } 0 5 {A21R:G -> A20R:A: adjacent_3p downward } 0 6 {A20R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A42R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A21R:G -> A22R:A: adjacent_5p upward } 0 9 {A22R:A -> A21R:G: adjacent_3p downward } 0 10 {A21R:G -> A41R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A41R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A22R:A -> A40R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A40R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A40R:U -> A41R:C: adjacent_5p } 0 15 {A41R:C -> A40R:U: adjacent_3p } 0 16 {A41R:C -> A42R:U: adjacent_5p } 0 17 {A42R:U -> A41R:C: adjacent_3p } 0 18 {A42R:U -> A43R:G: adjacent_5p } 0 19 {A43R:G -> A42R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A26R:G 0 1 A27R:A 0 2 A28R:G 0 3 A29R:C 0 4 A36R:G 0 5 A37R:C 0 6 A38R:U 0 7 A39R:C 0 [Edges] 0 {A26R:G -> A27R:A: adjacent_5p upward } 0 1 {A27R:A -> A26R:G: adjacent_3p downward } 0 2 {A26R:G -> A39R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A39R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A27R:A -> A28R:G: adjacent_5p upward } 0 5 {A28R:G -> A27R:A: adjacent_3p downward } 0 6 {A27R:A -> A38R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A38R:U -> A27R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A28R:G -> A29R:C: adjacent_5p upward } 0 9 {A29R:C -> A28R:G: adjacent_3p downward } 0 10 {A28R:G -> A37R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A37R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A29R:C -> A36R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A36R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A36R:G -> A37R:C: adjacent_5p upward } 0 15 {A37R:C -> A36R:G: adjacent_3p downward } 0 16 {A37R:C -> A38R:U: adjacent_5p } 0 17 {A38R:U -> A37R:C: adjacent_3p } 0 18 {A38R:U -> A39R:C: adjacent_5p upward } 0 19 {A39R:C -> A38R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:C 0 3 A5R:A 0 4 B87R:U 0 5 B88R:G 0 6 B89R:G 0 7 B90R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B90R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B90R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> B89R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B89R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> B88R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B88R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:A -> B87R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B87R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A5R:A -> B88R:G: outward } 0 15 {B88R:G -> A5R:A: outward } 0 16 {B87R:U -> B88R:G: adjacent_5p } 0 17 {B88R:G -> B87R:U: adjacent_3p } 0 18 {B88R:G -> B89R:G: adjacent_5p upward } 0 19 {B89R:G -> B88R:G: adjacent_3p downward } 0 20 {B89R:G -> B90R:C: adjacent_5p upward } 0 21 {B90R:C -> B89R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:C 0 2 A5R:A 0 3 A6R:C 0 4 B86R:G 0 5 B87R:U 0 6 B88R:G 0 7 B89R:G 0 [Edges] 0 {A3R:C -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B89R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B89R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> B88R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B88R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:A -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> B87R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B87R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:A -> B88R:G: outward } 0 13 {B88R:G -> A5R:A: outward } 0 14 {A6R:C -> B86R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B86R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B86R:G -> B87R:U: adjacent_5p upward } 0 17 {B87R:U -> B86R:G: adjacent_3p downward } 0 18 {B87R:U -> B88R:G: adjacent_5p } 0 19 {B88R:G -> B87R:U: adjacent_3p } 0 20 {B88R:G -> B89R:G: adjacent_5p upward } 0 21 {B89R:G -> B88R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:A 0 2 A6R:C 0 3 A7R:C 0 4 B85R:G 0 5 B86R:G 0 6 B87R:U 0 7 B88R:G 0 [Edges] 0 {A4R:C -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> B88R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B88R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> B87R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B87R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:A -> B88R:G: outward } 0 9 {B88R:G -> A5R:A: outward } 0 10 {A6R:C -> A7R:C: adjacent_5p upward } 0 11 {A7R:C -> A6R:C: adjacent_3p downward } 0 12 {A6R:C -> B86R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B86R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:C -> B85R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B85R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B85R:G -> B86R:G: adjacent_5p upward } 0 17 {B86R:G -> B85R:G: adjacent_3p downward } 0 18 {B86R:G -> B87R:U: adjacent_5p upward } 0 19 {B87R:U -> B86R:G: adjacent_3p downward } 0 20 {B87R:U -> B88R:G: adjacent_5p } 0 21 {B88R:G -> B87R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:G 0 2 A10R:A 0 3 A11R:C 0 4 B11R:G 0 5 B12R:U 0 6 B13R:C 0 7 B14R:A 0 [Edges] 0 {A8R:U -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:U: adjacent_3p downward } 0 2 {A8R:U -> B14R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B14R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:G -> A10R:A: adjacent_5p upward } 0 5 {A10R:A -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B13R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> B14R:A: outward } 0 9 {B14R:A -> A9R:G: outward } 0 10 {A10R:A -> A11R:C: adjacent_5p upward } 0 11 {A11R:C -> A10R:A: adjacent_3p downward } 0 12 {A10R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B12R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A11R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B11R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B11R:G -> B12R:U: adjacent_5p upward } 0 17 {B12R:U -> B11R:G: adjacent_3p downward } 0 18 {B12R:U -> B13R:C: adjacent_5p upward } 0 19 {B13R:C -> B12R:U: adjacent_3p downward } 0 20 {B13R:C -> B14R:A: adjacent_5p } 0 21 {B14R:A -> B13R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:A 0 2 A13R:G 0 3 A14R:U 0 4 B8R:G 0 5 B9R:A 0 6 B10R:A 0 7 B11R:G 0 [Edges] 0 {A11R:C -> A12R:A: adjacent_5p } 0 1 {A12R:A -> A11R:C: adjacent_3p } 0 2 {A11R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B11R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:A -> A13R:G: adjacent_5p } 0 5 {A13R:G -> A12R:A: adjacent_3p } 0 6 {A12R:A -> B8R:G: inward } 0 7 {B8R:G -> A12R:A: inward } 0 8 {A13R:G -> A14R:U: adjacent_5p } 0 9 {A14R:U -> A13R:G: adjacent_3p } 0 10 {A14R:U -> B8R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 11 {B8R:G -> A14R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 12 {A14R:U -> B9R:A: outward } 0 13 {B9R:A -> A14R:U: outward } 0 14 {B8R:G -> B9R:A: adjacent_5p } 0 15 {B9R:A -> B8R:G: adjacent_3p } 0 16 {B9R:A -> B10R:A: adjacent_5p upward } 0 17 {B10R:A -> B9R:A: adjacent_3p downward } 0 18 {B10R:A -> B11R:G: adjacent_5p upward } 0 19 {B11R:G -> B10R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . . . . 3 . . 9 . 10 12 . . 4 . 7 . 11 . 14 . . 5 . . . 13 15 . 16 . 6 . . . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A14R:U 0 1 A15R:C 0 2 A16R:C 0 3 A17R:U 0 4 B5R:A 0 5 B6R:G 0 6 B7R:A 0 7 B8R:G 0 [Edges] 0 {A14R:U -> A15R:C: adjacent_5p upward } 0 1 {A15R:C -> A14R:U: adjacent_3p downward } 0 2 {A14R:U -> B8R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 3 {B8R:G -> A14R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 4 {A15R:C -> A16R:C: adjacent_5p upward } 0 5 {A16R:C -> A15R:C: adjacent_3p downward } 0 6 {A15R:C -> B7R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 7 {B7R:A -> A15R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 8 {A16R:C -> A17R:U: adjacent_5p } 0 9 {A17R:U -> A16R:C: adjacent_3p } 0 10 {A16R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B6R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A17R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B5R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B5R:A -> B6R:G: adjacent_5p upward } 0 15 {B6R:G -> B5R:A: adjacent_3p downward } 0 16 {B6R:G -> B7R:A: adjacent_5p upward } 0 17 {B7R:A -> B6R:G: adjacent_3p downward } 0 18 {B7R:A -> B8R:G: adjacent_5p upward } 0 19 {B8R:G -> B7R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A15R:C 0 1 A16R:C 0 2 A17R:U 0 3 A18R:C 0 4 B4R:G 0 5 B5R:A 0 6 B6R:G 0 7 B7R:A 0 [Edges] 0 {A15R:C -> A16R:C: adjacent_5p upward } 0 1 {A16R:C -> A15R:C: adjacent_3p downward } 0 2 {A15R:C -> B7R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 3 {B7R:A -> A15R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 4 {A16R:C -> A17R:U: adjacent_5p } 0 5 {A17R:U -> A16R:C: adjacent_3p } 0 6 {A16R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B6R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A17R:U -> A18R:C: adjacent_5p upward } 0 9 {A18R:C -> A17R:U: adjacent_3p downward } 0 10 {A17R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B5R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A18R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B4R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B4R:G -> B5R:A: adjacent_5p upward } 0 15 {B5R:A -> B4R:G: adjacent_3p downward } 0 16 {B5R:A -> B6R:G: adjacent_5p upward } 0 17 {B6R:G -> B5R:A: adjacent_3p downward } 0 18 {B6R:G -> B7R:A: adjacent_5p upward } 0 19 {B7R:A -> B6R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A16R:C 0 1 A17R:U 0 2 A18R:C 0 3 A19R:U 0 4 B3R:A 0 5 B4R:G 0 6 B5R:A 0 7 B6R:G 0 [Edges] 0 {A16R:C -> A17R:U: adjacent_5p } 0 1 {A17R:U -> A16R:C: adjacent_3p } 0 2 {A16R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B6R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A17R:U -> A18R:C: adjacent_5p upward } 0 5 {A18R:C -> A17R:U: adjacent_3p downward } 0 6 {A17R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B5R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A18R:C -> A19R:U: adjacent_5p } 0 9 {A19R:U -> A18R:C: adjacent_3p } 0 10 {A18R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B4R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A19R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B3R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B3R:A -> B4R:G: adjacent_5p upward } 0 15 {B4R:G -> B3R:A: adjacent_3p downward } 0 16 {B4R:G -> B5R:A: adjacent_5p upward } 0 17 {B5R:A -> B4R:G: adjacent_3p downward } 0 18 {B5R:A -> B6R:G: adjacent_5p upward } 0 19 {B6R:G -> B5R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A17R:U 0 1 A18R:C 0 2 A19R:U 0 3 A20R:C 0 4 B2R:G 0 5 B3R:A 0 6 B4R:G 0 7 B5R:A 0 [Edges] 0 {A17R:U -> A18R:C: adjacent_5p upward } 0 1 {A18R:C -> A17R:U: adjacent_3p downward } 0 2 {A17R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B5R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A18R:C -> A19R:U: adjacent_5p } 0 5 {A19R:U -> A18R:C: adjacent_3p } 0 6 {A18R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B4R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A19R:U -> A20R:C: adjacent_5p } 0 9 {A20R:C -> A19R:U: adjacent_3p } 0 10 {A19R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B3R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A20R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B2R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B2R:G -> B3R:A: adjacent_5p upward } 0 15 {B3R:A -> B2R:G: adjacent_3p downward } 0 16 {B3R:A -> B4R:G: adjacent_5p upward } 0 17 {B4R:G -> B3R:A: adjacent_3p downward } 0 18 {B4R:G -> B5R:A: adjacent_5p upward } 0 19 {B5R:A -> B4R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B15R:A 0 1 B16R:C 0 2 B17R:C 0 3 B18R:A 0 4 B65R:U 0 5 B66R:G 0 6 B67R:G 0 7 B68R:U 0 [Edges] 0 {B15R:A -> B16R:C: adjacent_5p upward } 0 1 {B16R:C -> B15R:A: adjacent_3p downward } 0 2 {B15R:A -> B68R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B68R:U -> B15R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B16R:C -> B17R:C: adjacent_5p } 0 5 {B17R:C -> B16R:C: adjacent_3p } 0 6 {B16R:C -> B67R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B67R:G -> B16R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B17R:C -> B18R:A: adjacent_5p upward } 0 9 {B18R:A -> B17R:C: adjacent_3p downward } 0 10 {B17R:C -> B66R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B66R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B18R:A -> B65R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B65R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B18R:A -> B66R:G: outward } 0 15 {B66R:G -> B18R:A: outward } 0 16 {B65R:U -> B66R:G: adjacent_5p } 0 17 {B66R:G -> B65R:U: adjacent_3p } 0 18 {B66R:G -> B67R:G: adjacent_5p upward } 0 19 {B67R:G -> B66R:G: adjacent_3p downward } 0 20 {B67R:G -> B68R:U: adjacent_5p upward } 0 21 {B68R:U -> B67R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B16R:C 0 1 B17R:C 0 2 B18R:A 0 3 B19R:G 0 4 B64R:C 0 5 B65R:U 0 6 B66R:G 0 7 B67R:G 0 [Edges] 0 {B16R:C -> B17R:C: adjacent_5p } 0 1 {B17R:C -> B16R:C: adjacent_3p } 0 2 {B16R:C -> B67R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B67R:G -> B16R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B17R:C -> B18R:A: adjacent_5p upward } 0 5 {B18R:A -> B17R:C: adjacent_3p downward } 0 6 {B17R:C -> B66R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B66R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B18R:A -> B19R:G: adjacent_5p upward } 0 9 {B19R:G -> B18R:A: adjacent_3p downward } 0 10 {B18R:A -> B65R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B65R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B18R:A -> B66R:G: outward } 0 13 {B66R:G -> B18R:A: outward } 0 14 {B19R:G -> B64R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B64R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B64R:C -> B65R:U: adjacent_5p upward } 0 17 {B65R:U -> B64R:C: adjacent_3p downward } 0 18 {B65R:U -> B66R:G: adjacent_5p } 0 19 {B66R:G -> B65R:U: adjacent_3p } 0 20 {B66R:G -> B67R:G: adjacent_5p upward } 0 21 {B67R:G -> B66R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B17R:C 0 1 B18R:A 0 2 B19R:G 0 3 B20R:A 0 4 B63R:C 0 5 B64R:C 0 6 B65R:U 0 7 B66R:G 0 [Edges] 0 {B17R:C -> B18R:A: adjacent_5p upward } 0 1 {B18R:A -> B17R:C: adjacent_3p downward } 0 2 {B17R:C -> B66R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B66R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B18R:A -> B19R:G: adjacent_5p upward } 0 5 {B19R:G -> B18R:A: adjacent_3p downward } 0 6 {B18R:A -> B65R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B65R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B18R:A -> B66R:G: outward } 0 9 {B66R:G -> B18R:A: outward } 0 10 {B19R:G -> B20R:A: adjacent_5p upward } 0 11 {B20R:A -> B19R:G: adjacent_3p downward } 0 12 {B19R:G -> B64R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B64R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B20R:A -> B63R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 15 {B63R:C -> B20R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 16 {B63R:C -> B64R:C: adjacent_5p } 0 17 {B64R:C -> B63R:C: adjacent_3p } 0 18 {B64R:C -> B65R:U: adjacent_5p upward } 0 19 {B65R:U -> B64R:C: adjacent_3p downward } 0 20 {B65R:U -> B66R:G: adjacent_5p } 0 21 {B66R:G -> B65R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B18R:A 0 1 B19R:G 0 2 B20R:A 0 3 B21R:G 0 4 B62R:A 0 5 B63R:C 0 6 B64R:C 0 7 B65R:U 0 [Edges] 0 {B18R:A -> B19R:G: adjacent_5p upward } 0 1 {B19R:G -> B18R:A: adjacent_3p downward } 0 2 {B18R:A -> B65R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B65R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B19R:G -> B20R:A: adjacent_5p upward } 0 5 {B20R:A -> B19R:G: adjacent_3p downward } 0 6 {B19R:G -> B64R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B64R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B20R:A -> B21R:G: adjacent_5p upward } 0 9 {B21R:G -> B20R:A: adjacent_3p downward } 0 10 {B20R:A -> B63R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 11 {B63R:C -> B20R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 12 {B21R:G -> B62R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {B62R:A -> B21R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {B62R:A -> B63R:C: adjacent_5p upward } 0 15 {B63R:C -> B62R:A: adjacent_3p downward } 0 16 {B63R:C -> B64R:C: adjacent_5p } 0 17 {B64R:C -> B63R:C: adjacent_3p } 0 18 {B64R:C -> B65R:U: adjacent_5p upward } 0 19 {B65R:U -> B64R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B19R:G 0 1 B20R:A 0 2 B21R:G 0 3 B22R:A 0 4 B61R:U 0 5 B62R:A 0 6 B63R:C 0 7 B64R:C 0 [Edges] 0 {B19R:G -> B20R:A: adjacent_5p upward } 0 1 {B20R:A -> B19R:G: adjacent_3p downward } 0 2 {B19R:G -> B64R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B64R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B20R:A -> B21R:G: adjacent_5p upward } 0 5 {B21R:G -> B20R:A: adjacent_3p downward } 0 6 {B20R:A -> B63R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 7 {B63R:C -> B20R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 8 {B21R:G -> B22R:A: adjacent_5p } 0 9 {B22R:A -> B21R:G: adjacent_3p } 0 10 {B21R:G -> B62R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {B62R:A -> B21R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {B22R:A -> B61R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 13 {B61R:U -> B22R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 14 {B22R:A -> B62R:A: outward } 0 15 {B62R:A -> B22R:A: outward } 0 16 {B61R:U -> B62R:A: adjacent_5p } 0 17 {B62R:A -> B61R:U: adjacent_3p } 0 18 {B62R:A -> B63R:C: adjacent_5p upward } 0 19 {B63R:C -> B62R:A: adjacent_3p downward } 0 20 {B63R:C -> B64R:C: adjacent_5p } 0 21 {B64R:C -> B63R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B24R:A 0 1 B25R:C 0 2 B26R:A 0 3 B27R:C 0 4 B54R:G 0 5 B55R:G 0 6 B56R:U 0 7 B57R:A 0 [Edges] 0 {B24R:A -> B25R:C: adjacent_5p upward } 0 1 {B25R:C -> B24R:A: adjacent_3p downward } 0 2 {B24R:A -> B57R:A: pairing antiparallel trans one_hbond Wh/Hh } 0 3 {B57R:A -> B24R:A: pairing antiparallel trans one_hbond Hh/Wh } 0 4 {B25R:C -> B26R:A: adjacent_5p upward } 0 5 {B26R:A -> B25R:C: adjacent_3p downward } 0 6 {B26R:A -> B27R:C: adjacent_5p upward } 0 7 {B27R:C -> B26R:A: adjacent_3p downward } 0 8 {B26R:A -> B55R:G: pairing antiparallel cis VIII Ww/Ww } 0 9 {B55R:G -> B26R:A: pairing antiparallel cis VIII Ww/Ww } 0 10 {B27R:C -> B54R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B54R:G -> B27R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B54R:G -> B55R:G: adjacent_5p upward } 0 13 {B55R:G -> B54R:G: adjacent_3p downward } 0 14 {B55R:G -> B56R:U: adjacent_5p } 0 15 {B56R:U -> B55R:G: adjacent_3p } 0 16 {B56R:U -> B57R:A: adjacent_5p } 0 17 {B57R:A -> B56R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 B26R:A 0 1 B27R:C 0 2 B28R:A 0 3 B29R:C 0 4 B52R:G 0 5 B53R:U 0 6 B54R:G 0 7 B55R:G 0 [Edges] 0 {B26R:A -> B27R:C: adjacent_5p upward } 0 1 {B27R:C -> B26R:A: adjacent_3p downward } 0 2 {B26R:A -> B55R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {B55R:G -> B26R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {B27R:C -> B28R:A: adjacent_5p upward } 0 5 {B28R:A -> B27R:C: adjacent_3p downward } 0 6 {B27R:C -> B54R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B54R:G -> B27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B28R:A -> B29R:C: adjacent_5p upward } 0 9 {B29R:C -> B28R:A: adjacent_3p downward } 0 10 {B28R:A -> B53R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B53R:U -> B28R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B28R:A -> B54R:G: outward } 0 13 {B54R:G -> B28R:A: outward } 0 14 {B29R:C -> B52R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B52R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B52R:G -> B53R:U: adjacent_5p upward } 0 17 {B53R:U -> B52R:G: adjacent_3p downward } 0 18 {B53R:U -> B54R:G: adjacent_5p upward } 0 19 {B54R:G -> B53R:U: adjacent_3p downward } 0 20 {B54R:G -> B55R:G: adjacent_5p upward } 0 21 {B55R:G -> B54R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B27R:C 0 1 B28R:A 0 2 B29R:C 0 3 B30R:C 0 4 B51R:G 0 5 B52R:G 0 6 B53R:U 0 7 B54R:G 0 [Edges] 0 {B27R:C -> B28R:A: adjacent_5p upward } 0 1 {B28R:A -> B27R:C: adjacent_3p downward } 0 2 {B27R:C -> B54R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B54R:G -> B27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B28R:A -> B29R:C: adjacent_5p upward } 0 5 {B29R:C -> B28R:A: adjacent_3p downward } 0 6 {B28R:A -> B53R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B53R:U -> B28R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B28R:A -> B54R:G: outward } 0 9 {B54R:G -> B28R:A: outward } 0 10 {B29R:C -> B30R:C: adjacent_5p upward } 0 11 {B30R:C -> B29R:C: adjacent_3p downward } 0 12 {B29R:C -> B52R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B52R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B30R:C -> B51R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B51R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B51R:G -> B52R:G: adjacent_5p upward } 0 17 {B52R:G -> B51R:G: adjacent_3p downward } 0 18 {B52R:G -> B53R:U: adjacent_5p upward } 0 19 {B53R:U -> B52R:G: adjacent_3p downward } 0 20 {B53R:U -> B54R:G: adjacent_5p upward } 0 21 {B54R:G -> B53R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B28R:A 0 1 B29R:C 0 2 B30R:C 0 3 B31R:A 0 4 B50R:U 0 5 B51R:G 0 6 B52R:G 0 7 B53R:U 0 [Edges] 0 {B28R:A -> B29R:C: adjacent_5p upward } 0 1 {B29R:C -> B28R:A: adjacent_3p downward } 0 2 {B28R:A -> B53R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B53R:U -> B28R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B29R:C -> B30R:C: adjacent_5p upward } 0 5 {B30R:C -> B29R:C: adjacent_3p downward } 0 6 {B29R:C -> B52R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B52R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B30R:C -> B31R:A: adjacent_5p } 0 9 {B31R:A -> B30R:C: adjacent_3p } 0 10 {B30R:C -> B51R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B51R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B31R:A -> B50R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B50R:U -> B31R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B31R:A -> B51R:G: outward } 0 15 {B51R:G -> B31R:A: outward } 0 16 {B50R:U -> B51R:G: adjacent_5p upward } 0 17 {B51R:G -> B50R:U: adjacent_3p downward } 0 18 {B51R:G -> B52R:G: adjacent_5p upward } 0 19 {B52R:G -> B51R:G: adjacent_3p downward } 0 20 {B52R:G -> B53R:U: adjacent_5p upward } 0 21 {B53R:U -> B52R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B29R:C 0 1 B30R:C 0 2 B31R:A 0 3 B32R:A 0 4 B49R:U 0 5 B50R:U 0 6 B51R:G 0 7 B52R:G 0 [Edges] 0 {B29R:C -> B30R:C: adjacent_5p upward } 0 1 {B30R:C -> B29R:C: adjacent_3p downward } 0 2 {B29R:C -> B52R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B52R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B30R:C -> B31R:A: adjacent_5p } 0 5 {B31R:A -> B30R:C: adjacent_3p } 0 6 {B30R:C -> B51R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B51R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B31R:A -> B32R:A: adjacent_5p upward } 0 9 {B32R:A -> B31R:A: adjacent_3p downward } 0 10 {B31R:A -> B50R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B50R:U -> B31R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B31R:A -> B51R:G: outward } 0 13 {B51R:G -> B31R:A: outward } 0 14 {B32R:A -> B49R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B49R:U -> B32R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B49R:U -> B50R:U: adjacent_5p upward } 0 17 {B50R:U -> B49R:U: adjacent_3p downward } 0 18 {B50R:U -> B51R:G: adjacent_5p upward } 0 19 {B51R:G -> B50R:U: adjacent_3p downward } 0 20 {B51R:G -> B52R:G: adjacent_5p upward } 0 21 {B52R:G -> B51R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B30R:C 0 1 B31R:A 0 2 B32R:A 0 3 B33R:C 0 4 B48R:G 0 5 B49R:U 0 6 B50R:U 0 7 B51R:G 0 [Edges] 0 {B30R:C -> B31R:A: adjacent_5p } 0 1 {B31R:A -> B30R:C: adjacent_3p } 0 2 {B30R:C -> B51R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B51R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B31R:A -> B32R:A: adjacent_5p upward } 0 5 {B32R:A -> B31R:A: adjacent_3p downward } 0 6 {B31R:A -> B50R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B50R:U -> B31R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B31R:A -> B51R:G: outward } 0 9 {B51R:G -> B31R:A: outward } 0 10 {B32R:A -> B33R:C: adjacent_5p upward } 0 11 {B33R:C -> B32R:A: adjacent_3p downward } 0 12 {B32R:A -> B49R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B49R:U -> B32R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B33R:C -> B48R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B48R:G -> B33R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B48R:G -> B49R:U: adjacent_5p upward } 0 17 {B49R:U -> B48R:G: adjacent_3p downward } 0 18 {B49R:U -> B50R:U: adjacent_5p upward } 0 19 {B50R:U -> B49R:U: adjacent_3p downward } 0 20 {B50R:U -> B51R:G: adjacent_5p upward } 0 21 {B51R:G -> B50R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B31R:A 0 1 B32R:A 0 2 B33R:C 0 3 B34R:C 0 4 B47R:G 0 5 B48R:G 0 6 B49R:U 0 7 B50R:U 0 [Edges] 0 {B31R:A -> B32R:A: adjacent_5p upward } 0 1 {B32R:A -> B31R:A: adjacent_3p downward } 0 2 {B31R:A -> B50R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B50R:U -> B31R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B32R:A -> B33R:C: adjacent_5p upward } 0 5 {B33R:C -> B32R:A: adjacent_3p downward } 0 6 {B32R:A -> B49R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B49R:U -> B32R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B33R:C -> B34R:C: adjacent_5p upward } 0 9 {B34R:C -> B33R:C: adjacent_3p downward } 0 10 {B33R:C -> B48R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B48R:G -> B33R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B34R:C -> B47R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B47R:G -> B34R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B47R:G -> B48R:G: adjacent_5p upward } 0 15 {B48R:G -> B47R:G: adjacent_3p downward } 0 16 {B48R:G -> B49R:U: adjacent_5p upward } 0 17 {B49R:U -> B48R:G: adjacent_3p downward } 0 18 {B49R:U -> B50R:U: adjacent_5p upward } 0 19 {B50R:U -> B49R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B32R:A 0 1 B33R:C 0 2 B34R:C 0 3 B35R:C 0 4 B46R:G 0 5 B47R:G 0 6 B48R:G 0 7 B49R:U 0 [Edges] 0 {B32R:A -> B33R:C: adjacent_5p upward } 0 1 {B33R:C -> B32R:A: adjacent_3p downward } 0 2 {B32R:A -> B49R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B49R:U -> B32R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B33R:C -> B34R:C: adjacent_5p upward } 0 5 {B34R:C -> B33R:C: adjacent_3p downward } 0 6 {B33R:C -> B48R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B48R:G -> B33R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B34R:C -> B35R:C: adjacent_5p upward } 0 9 {B35R:C -> B34R:C: adjacent_3p downward } 0 10 {B34R:C -> B47R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B47R:G -> B34R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B35R:C -> B46R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B46R:G -> B35R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B35R:C -> B47R:G: outward } 0 15 {B47R:G -> B35R:C: outward } 0 16 {B46R:G -> B47R:G: adjacent_5p upward } 0 17 {B47R:G -> B46R:G: adjacent_3p downward } 0 18 {B47R:G -> B48R:G: adjacent_5p upward } 0 19 {B48R:G -> B47R:G: adjacent_3p downward } 0 20 {B48R:G -> B49R:U: adjacent_5p upward } 0 21 {B49R:U -> B48R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B69R:A 0 1 B70R:C 0 2 B71R:G 0 3 B72R:G 0 4 B81R:U 0 5 B82R:C 0 6 B83R:G 0 7 B84R:U 0 [Edges] 0 {B69R:A -> B70R:C: adjacent_5p upward } 0 1 {B70R:C -> B69R:A: adjacent_3p downward } 0 2 {B69R:A -> B84R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B84R:U -> B69R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B70R:C -> B71R:G: adjacent_5p upward } 0 5 {B71R:G -> B70R:C: adjacent_3p downward } 0 6 {B70R:C -> B83R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B83R:G -> B70R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B71R:G -> B72R:G: adjacent_5p upward } 0 9 {B72R:G -> B71R:G: adjacent_3p downward } 0 10 {B71R:G -> B82R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B82R:C -> B71R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B71R:G -> B83R:G: outward } 0 13 {B83R:G -> B71R:G: outward } 0 14 {B72R:G -> B81R:U: pairing antiparallel cis Ww/Ws } 0 15 {B81R:U -> B72R:G: pairing antiparallel cis Ws/Ww } 0 16 {B72R:G -> B82R:C: outward } 0 17 {B82R:C -> B72R:G: outward } 0 18 {B81R:U -> B82R:C: adjacent_5p } 0 19 {B82R:C -> B81R:U: adjacent_3p } 0 20 {B82R:C -> B83R:G: adjacent_5p } 0 21 {B83R:G -> B82R:C: adjacent_3p } 0 22 {B83R:G -> B84R:U: adjacent_5p upward } 0 23 {B84R:U -> B83R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 B71R:G 0 1 B72R:G 0 2 B73R:G 0 3 B74R:G 0 4 B79R:C 0 5 B80R:U 0 6 B81R:U 0 7 B82R:C 0 [Edges] 0 {B71R:G -> B72R:G: adjacent_5p upward } 0 1 {B72R:G -> B71R:G: adjacent_3p downward } 0 2 {B71R:G -> B82R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B82R:C -> B71R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B72R:G -> B73R:G: adjacent_5p inward } 0 5 {B73R:G -> B72R:G: adjacent_3p inward } 0 6 {B72R:G -> B81R:U: pairing antiparallel cis Ww/Ws } 0 7 {B81R:U -> B72R:G: pairing antiparallel cis Ws/Ww } 0 8 {B72R:G -> B82R:C: outward } 0 9 {B82R:C -> B72R:G: outward } 0 10 {B73R:G -> B74R:G: adjacent_5p } 0 11 {B74R:G -> B73R:G: adjacent_3p } 0 12 {B74R:G -> B79R:C: pairing antiparallel cis 130 Ww/Ws } 0 13 {B79R:C -> B74R:G: pairing antiparallel cis 130 Ws/Ww } 0 14 {B79R:C -> B80R:U: adjacent_5p } 0 15 {B80R:U -> B79R:C: adjacent_3p } 0 16 {B80R:U -> B81R:U: adjacent_5p upward } 0 17 {B81R:U -> B80R:U: adjacent_3p downward } 0 18 {B81R:U -> B82R:C: adjacent_5p } 0 19 {B82R:C -> B81R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 9 . . . . 19 . [GraphModel] [Vertices] 0 B72R:G 0 1 B73R:G 0 2 B74R:G 0 3 B75R:G 0 4 B78R:A 0 5 B79R:C 0 6 B80R:U 0 7 B81R:U 0 [Edges] 0 {B72R:G -> B73R:G: adjacent_5p inward } 0 1 {B73R:G -> B72R:G: adjacent_3p inward } 0 2 {B72R:G -> B81R:U: pairing antiparallel cis Ww/Ws } 0 3 {B81R:U -> B72R:G: pairing antiparallel cis Ws/Ww } 0 4 {B73R:G -> B74R:G: adjacent_5p } 0 5 {B74R:G -> B73R:G: adjacent_3p } 0 6 {B74R:G -> B75R:G: adjacent_5p upward } 0 7 {B75R:G -> B74R:G: adjacent_3p downward } 0 8 {B74R:G -> B79R:C: pairing antiparallel cis 130 Ww/Ws } 0 9 {B79R:C -> B74R:G: pairing antiparallel cis 130 Ws/Ww } 0 10 {B75R:G -> B78R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 11 {B78R:A -> B75R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 12 {B78R:A -> B79R:C: adjacent_5p } 0 13 {B79R:C -> B78R:A: adjacent_3p } 0 14 {B79R:C -> B80R:U: adjacent_5p } 0 15 {B80R:U -> B79R:C: adjacent_3p } 0 16 {B80R:U -> B81R:U: adjacent_5p upward } 0 17 {B81R:U -> B80R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 D2R:G 0 1 D3R:C 0 2 D4R:C 0 3 D5R:A 0 4 E87R:U 0 5 E88R:G 0 6 E89R:G 0 7 E90R:C 0 [Edges] 0 {D2R:G -> D3R:C: adjacent_5p upward } 0 1 {D3R:C -> D2R:G: adjacent_3p downward } 0 2 {D2R:G -> E90R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E90R:C -> D2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D3R:C -> D4R:C: adjacent_5p upward } 0 5 {D4R:C -> D3R:C: adjacent_3p downward } 0 6 {D3R:C -> E89R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E89R:G -> D3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D4R:C -> D5R:A: adjacent_5p upward } 0 9 {D5R:A -> D4R:C: adjacent_3p downward } 0 10 {D4R:C -> E88R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {E88R:G -> D4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D5R:A -> E87R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {E87R:U -> D5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {D5R:A -> E88R:G: outward } 0 15 {E88R:G -> D5R:A: outward } 0 16 {E87R:U -> E88R:G: adjacent_5p upward } 0 17 {E88R:G -> E87R:U: adjacent_3p downward } 0 18 {E88R:G -> E89R:G: adjacent_5p upward } 0 19 {E89R:G -> E88R:G: adjacent_3p downward } 0 20 {E89R:G -> E90R:C: adjacent_5p upward } 0 21 {E90R:C -> E89R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D3R:C 0 1 D4R:C 0 2 D5R:A 0 3 D6R:C 0 4 E86R:G 0 5 E87R:U 0 6 E88R:G 0 7 E89R:G 0 [Edges] 0 {D3R:C -> D4R:C: adjacent_5p upward } 0 1 {D4R:C -> D3R:C: adjacent_3p downward } 0 2 {D3R:C -> E89R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E89R:G -> D3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D4R:C -> D5R:A: adjacent_5p upward } 0 5 {D5R:A -> D4R:C: adjacent_3p downward } 0 6 {D4R:C -> E88R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E88R:G -> D4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D5R:A -> D6R:C: adjacent_5p upward } 0 9 {D6R:C -> D5R:A: adjacent_3p downward } 0 10 {D5R:A -> E87R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {E87R:U -> D5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {D5R:A -> E88R:G: outward } 0 13 {E88R:G -> D5R:A: outward } 0 14 {D6R:C -> E86R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {E86R:G -> D6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {E86R:G -> E87R:U: adjacent_5p upward } 0 17 {E87R:U -> E86R:G: adjacent_3p downward } 0 18 {E87R:U -> E88R:G: adjacent_5p upward } 0 19 {E88R:G -> E87R:U: adjacent_3p downward } 0 20 {E88R:G -> E89R:G: adjacent_5p upward } 0 21 {E89R:G -> E88R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D4R:C 0 1 D5R:A 0 2 D6R:C 0 3 D7R:C 0 4 E85R:G 0 5 E86R:G 0 6 E87R:U 0 7 E88R:G 0 [Edges] 0 {D4R:C -> D5R:A: adjacent_5p upward } 0 1 {D5R:A -> D4R:C: adjacent_3p downward } 0 2 {D4R:C -> E88R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E88R:G -> D4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D5R:A -> D6R:C: adjacent_5p upward } 0 5 {D6R:C -> D5R:A: adjacent_3p downward } 0 6 {D5R:A -> E87R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {E87R:U -> D5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D5R:A -> E88R:G: outward } 0 9 {E88R:G -> D5R:A: outward } 0 10 {D6R:C -> D7R:C: adjacent_5p } 0 11 {D7R:C -> D6R:C: adjacent_3p } 0 12 {D6R:C -> E86R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {E86R:G -> D6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D7R:C -> E85R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {E85R:G -> D7R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D7R:C -> E86R:G: outward } 0 17 {E86R:G -> D7R:C: outward } 0 18 {E85R:G -> E86R:G: adjacent_5p upward } 0 19 {E86R:G -> E85R:G: adjacent_3p downward } 0 20 {E86R:G -> E87R:U: adjacent_5p upward } 0 21 {E87R:U -> E86R:G: adjacent_3p downward } 0 22 {E87R:U -> E88R:G: adjacent_5p upward } 0 23 {E88R:G -> E87R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 D11R:C 0 1 D12R:A 0 2 D13R:G 0 3 D14R:U 0 4 E8R:G 0 5 E9R:A 0 6 E10R:A 0 7 E11R:G 0 [Edges] 0 {D11R:C -> D12R:A: adjacent_5p } 0 1 {D12R:A -> D11R:C: adjacent_3p } 0 2 {D11R:C -> E11R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E11R:G -> D11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D12R:A -> D13R:G: adjacent_5p } 0 5 {D13R:G -> D12R:A: adjacent_3p } 0 6 {D12R:A -> E8R:G: inward } 0 7 {E8R:G -> D12R:A: inward } 0 8 {D12R:A -> E9R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 9 {E9R:A -> D12R:A: pairing antiparallel trans one_hbond Hh/Ss } 0 10 {D13R:G -> D14R:U: adjacent_5p } 0 11 {D14R:U -> D13R:G: adjacent_3p } 0 12 {D14R:U -> E8R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 13 {E8R:G -> D14R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 14 {D14R:U -> E9R:A: outward } 0 15 {E9R:A -> D14R:U: outward } 0 16 {E8R:G -> E9R:A: adjacent_5p } 0 17 {E9R:A -> E8R:G: adjacent_3p } 0 18 {E9R:A -> E10R:A: adjacent_5p upward } 0 19 {E10R:A -> E9R:A: adjacent_3p downward } 0 20 {E10R:A -> E11R:G: adjacent_5p upward } 0 21 {E11R:G -> E10R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 8 . . 2 . 5 . 10 . . . . 3 . . 11 . 12 14 . . 4 . 7 . 13 . 16 . . 5 . 9 . 15 17 . 18 . 6 . . . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D14R:U 0 1 D15R:C 0 2 D16R:C 0 3 D17R:U 0 4 E5R:A 0 5 E6R:G 0 6 E7R:A 0 7 E8R:G 0 [Edges] 0 {D14R:U -> D15R:C: adjacent_5p upward } 0 1 {D15R:C -> D14R:U: adjacent_3p downward } 0 2 {D14R:U -> E8R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 3 {E8R:G -> D14R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 4 {D15R:C -> D16R:C: adjacent_5p upward } 0 5 {D16R:C -> D15R:C: adjacent_3p downward } 0 6 {D15R:C -> E7R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 7 {E7R:A -> D15R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 8 {D16R:C -> D17R:U: adjacent_5p upward } 0 9 {D17R:U -> D16R:C: adjacent_3p downward } 0 10 {D16R:C -> E6R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {E6R:G -> D16R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D17R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {E5R:A -> D17R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {E5R:A -> E6R:G: adjacent_5p upward } 0 15 {E6R:G -> E5R:A: adjacent_3p downward } 0 16 {E6R:G -> E7R:A: adjacent_5p upward } 0 17 {E7R:A -> E6R:G: adjacent_3p downward } 0 18 {E7R:A -> E8R:G: adjacent_5p upward } 0 19 {E8R:G -> E7R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D15R:C 0 1 D16R:C 0 2 D17R:U 0 3 D18R:C 0 4 E4R:G 0 5 E5R:A 0 6 E6R:G 0 7 E7R:A 0 [Edges] 0 {D15R:C -> D16R:C: adjacent_5p upward } 0 1 {D16R:C -> D15R:C: adjacent_3p downward } 0 2 {D15R:C -> E7R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 3 {E7R:A -> D15R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 4 {D16R:C -> D17R:U: adjacent_5p upward } 0 5 {D17R:U -> D16R:C: adjacent_3p downward } 0 6 {D16R:C -> E6R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E6R:G -> D16R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D17R:U -> D18R:C: adjacent_5p upward } 0 9 {D18R:C -> D17R:U: adjacent_3p downward } 0 10 {D17R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {E5R:A -> D17R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D18R:C -> E4R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {E4R:G -> D18R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {E4R:G -> E5R:A: adjacent_5p upward } 0 15 {E5R:A -> E4R:G: adjacent_3p downward } 0 16 {E5R:A -> E6R:G: adjacent_5p upward } 0 17 {E6R:G -> E5R:A: adjacent_3p downward } 0 18 {E6R:G -> E7R:A: adjacent_5p upward } 0 19 {E7R:A -> E6R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D16R:C 0 1 D17R:U 0 2 D18R:C 0 3 D19R:U 0 4 E3R:A 0 5 E4R:G 0 6 E5R:A 0 7 E6R:G 0 [Edges] 0 {D16R:C -> D17R:U: adjacent_5p upward } 0 1 {D17R:U -> D16R:C: adjacent_3p downward } 0 2 {D16R:C -> E6R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E6R:G -> D16R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D17R:U -> D18R:C: adjacent_5p upward } 0 5 {D18R:C -> D17R:U: adjacent_3p downward } 0 6 {D17R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {E5R:A -> D17R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D18R:C -> D19R:U: adjacent_5p } 0 9 {D19R:U -> D18R:C: adjacent_3p } 0 10 {D18R:C -> E4R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {E4R:G -> D18R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D19R:U -> E3R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {E3R:A -> D19R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {E3R:A -> E4R:G: adjacent_5p upward } 0 15 {E4R:G -> E3R:A: adjacent_3p downward } 0 16 {E4R:G -> E5R:A: adjacent_5p upward } 0 17 {E5R:A -> E4R:G: adjacent_3p downward } 0 18 {E5R:A -> E6R:G: adjacent_5p upward } 0 19 {E6R:G -> E5R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D17R:U 0 1 D18R:C 0 2 D19R:U 0 3 D20R:C 0 4 E2R:G 0 5 E3R:A 0 6 E4R:G 0 7 E5R:A 0 [Edges] 0 {D17R:U -> D18R:C: adjacent_5p upward } 0 1 {D18R:C -> D17R:U: adjacent_3p downward } 0 2 {D17R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {E5R:A -> D17R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D18R:C -> D19R:U: adjacent_5p } 0 5 {D19R:U -> D18R:C: adjacent_3p } 0 6 {D18R:C -> E4R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E4R:G -> D18R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D19R:U -> D20R:C: adjacent_5p upward } 0 9 {D20R:C -> D19R:U: adjacent_3p downward } 0 10 {D19R:U -> E3R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {E3R:A -> D19R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D20R:C -> E2R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {E2R:G -> D20R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {E2R:G -> E3R:A: adjacent_5p upward } 0 15 {E3R:A -> E2R:G: adjacent_3p downward } 0 16 {E3R:A -> E4R:G: adjacent_5p upward } 0 17 {E4R:G -> E3R:A: adjacent_3p downward } 0 18 {E4R:G -> E5R:A: adjacent_5p upward } 0 19 {E5R:A -> E4R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E15R:A 0 1 E16R:C 0 2 E17R:C 0 3 E18R:A 0 4 E65R:U 0 5 E66R:G 0 6 E67R:G 0 7 E68R:U 0 [Edges] 0 {E15R:A -> E16R:C: adjacent_5p upward } 0 1 {E16R:C -> E15R:A: adjacent_3p downward } 0 2 {E15R:A -> E68R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {E68R:U -> E15R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {E16R:C -> E17R:C: adjacent_5p upward } 0 5 {E17R:C -> E16R:C: adjacent_3p downward } 0 6 {E16R:C -> E67R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E67R:G -> E16R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E17R:C -> E18R:A: adjacent_5p upward } 0 9 {E18R:A -> E17R:C: adjacent_3p downward } 0 10 {E17R:C -> E66R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {E66R:G -> E17R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {E18R:A -> E65R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 13 {E65R:U -> E18R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 14 {E18R:A -> E66R:G: outward } 0 15 {E66R:G -> E18R:A: outward } 0 16 {E65R:U -> E66R:G: adjacent_5p } 0 17 {E66R:G -> E65R:U: adjacent_3p } 0 18 {E66R:G -> E67R:G: adjacent_5p upward } 0 19 {E67R:G -> E66R:G: adjacent_3p downward } 0 20 {E67R:G -> E68R:U: adjacent_5p upward } 0 21 {E68R:U -> E67R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E16R:C 0 1 E17R:C 0 2 E18R:A 0 3 E19R:G 0 4 E64R:C 0 5 E65R:U 0 6 E66R:G 0 7 E67R:G 0 [Edges] 0 {E16R:C -> E17R:C: adjacent_5p upward } 0 1 {E17R:C -> E16R:C: adjacent_3p downward } 0 2 {E16R:C -> E67R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E67R:G -> E16R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E17R:C -> E18R:A: adjacent_5p upward } 0 5 {E18R:A -> E17R:C: adjacent_3p downward } 0 6 {E17R:C -> E66R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E66R:G -> E17R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E18R:A -> E19R:G: adjacent_5p upward } 0 9 {E19R:G -> E18R:A: adjacent_3p downward } 0 10 {E18R:A -> E65R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {E65R:U -> E18R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {E18R:A -> E66R:G: outward } 0 13 {E66R:G -> E18R:A: outward } 0 14 {E19R:G -> E64R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {E64R:C -> E19R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {E64R:C -> E65R:U: adjacent_5p upward } 0 17 {E65R:U -> E64R:C: adjacent_3p downward } 0 18 {E65R:U -> E66R:G: adjacent_5p } 0 19 {E66R:G -> E65R:U: adjacent_3p } 0 20 {E66R:G -> E67R:G: adjacent_5p upward } 0 21 {E67R:G -> E66R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E17R:C 0 1 E18R:A 0 2 E19R:G 0 3 E20R:A 0 4 E63R:C 0 5 E64R:C 0 6 E65R:U 0 7 E66R:G 0 [Edges] 0 {E17R:C -> E18R:A: adjacent_5p upward } 0 1 {E18R:A -> E17R:C: adjacent_3p downward } 0 2 {E17R:C -> E66R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E66R:G -> E17R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E18R:A -> E19R:G: adjacent_5p upward } 0 5 {E19R:G -> E18R:A: adjacent_3p downward } 0 6 {E18R:A -> E65R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {E65R:U -> E18R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {E18R:A -> E66R:G: outward } 0 9 {E66R:G -> E18R:A: outward } 0 10 {E19R:G -> E20R:A: adjacent_5p upward } 0 11 {E20R:A -> E19R:G: adjacent_3p downward } 0 12 {E19R:G -> E64R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {E64R:C -> E19R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {E20R:A -> E63R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 15 {E63R:C -> E20R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 16 {E63R:C -> E64R:C: adjacent_5p upward } 0 17 {E64R:C -> E63R:C: adjacent_3p downward } 0 18 {E64R:C -> E65R:U: adjacent_5p upward } 0 19 {E65R:U -> E64R:C: adjacent_3p downward } 0 20 {E65R:U -> E66R:G: adjacent_5p } 0 21 {E66R:G -> E65R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 E18R:A 0 1 E19R:G 0 2 E20R:A 0 3 E21R:G 0 4 E62R:A 0 5 E63R:C 0 6 E64R:C 0 7 E65R:U 0 [Edges] 0 {E18R:A -> E19R:G: adjacent_5p upward } 0 1 {E19R:G -> E18R:A: adjacent_3p downward } 0 2 {E18R:A -> E65R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {E65R:U -> E18R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {E19R:G -> E20R:A: adjacent_5p upward } 0 5 {E20R:A -> E19R:G: adjacent_3p downward } 0 6 {E19R:G -> E64R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E64R:C -> E19R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E20R:A -> E21R:G: adjacent_5p upward } 0 9 {E21R:G -> E20R:A: adjacent_3p downward } 0 10 {E20R:A -> E63R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 11 {E63R:C -> E20R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 12 {E21R:G -> E62R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 13 {E62R:A -> E21R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 14 {E62R:A -> E63R:C: adjacent_5p upward } 0 15 {E63R:C -> E62R:A: adjacent_3p downward } 0 16 {E63R:C -> E64R:C: adjacent_5p upward } 0 17 {E64R:C -> E63R:C: adjacent_3p downward } 0 18 {E64R:C -> E65R:U: adjacent_5p upward } 0 19 {E65R:U -> E64R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E19R:G 0 1 E20R:A 0 2 E21R:G 0 3 E22R:A 0 4 E61R:U 0 5 E62R:A 0 6 E63R:C 0 7 E64R:C 0 [Edges] 0 {E19R:G -> E20R:A: adjacent_5p upward } 0 1 {E20R:A -> E19R:G: adjacent_3p downward } 0 2 {E19R:G -> E64R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E64R:C -> E19R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E20R:A -> E21R:G: adjacent_5p upward } 0 5 {E21R:G -> E20R:A: adjacent_3p downward } 0 6 {E20R:A -> E63R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 7 {E63R:C -> E20R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 8 {E21R:G -> E22R:A: adjacent_5p } 0 9 {E22R:A -> E21R:G: adjacent_3p } 0 10 {E21R:G -> E62R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 11 {E62R:A -> E21R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 12 {E22R:A -> E61R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 13 {E61R:U -> E22R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 14 {E22R:A -> E62R:A: outward } 0 15 {E62R:A -> E22R:A: outward } 0 16 {E61R:U -> E62R:A: adjacent_5p } 0 17 {E62R:A -> E61R:U: adjacent_3p } 0 18 {E62R:A -> E63R:C: adjacent_5p upward } 0 19 {E63R:C -> E62R:A: adjacent_3p downward } 0 20 {E63R:C -> E64R:C: adjacent_5p upward } 0 21 {E64R:C -> E63R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E24R:A 0 1 E25R:C 0 2 E26R:A 0 3 E27R:C 0 4 E54R:G 0 5 E55R:G 0 6 E56R:U 0 7 E57R:A 0 [Edges] 0 {E24R:A -> E25R:C: adjacent_5p upward } 0 1 {E25R:C -> E24R:A: adjacent_3p downward } 0 2 {E24R:A -> E57R:A: pairing antiparallel trans one_hbond Wh/Hh } 0 3 {E57R:A -> E24R:A: pairing antiparallel trans one_hbond Hh/Wh } 0 4 {E25R:C -> E26R:A: adjacent_5p upward } 0 5 {E26R:A -> E25R:C: adjacent_3p downward } 0 6 {E26R:A -> E27R:C: adjacent_5p upward } 0 7 {E27R:C -> E26R:A: adjacent_3p downward } 0 8 {E26R:A -> E55R:G: pairing antiparallel cis VIII Ww/Ww } 0 9 {E55R:G -> E26R:A: pairing antiparallel cis VIII Ww/Ww } 0 10 {E27R:C -> E54R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {E54R:G -> E27R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {E54R:G -> E55R:G: adjacent_5p upward } 0 13 {E55R:G -> E54R:G: adjacent_3p downward } 0 14 {E55R:G -> E56R:U: adjacent_5p } 0 15 {E56R:U -> E55R:G: adjacent_3p } 0 16 {E56R:U -> E57R:A: adjacent_5p } 0 17 {E57R:A -> E56R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 E26R:A 0 1 E27R:C 0 2 E28R:A 0 3 E29R:C 0 4 E52R:G 0 5 E53R:U 0 6 E54R:G 0 7 E55R:G 0 [Edges] 0 {E26R:A -> E27R:C: adjacent_5p upward } 0 1 {E27R:C -> E26R:A: adjacent_3p downward } 0 2 {E26R:A -> E55R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {E55R:G -> E26R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {E27R:C -> E28R:A: adjacent_5p upward } 0 5 {E28R:A -> E27R:C: adjacent_3p downward } 0 6 {E27R:C -> E54R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E54R:G -> E27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E28R:A -> E29R:C: adjacent_5p upward } 0 9 {E29R:C -> E28R:A: adjacent_3p downward } 0 10 {E28R:A -> E53R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {E53R:U -> E28R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {E28R:A -> E54R:G: outward } 0 13 {E54R:G -> E28R:A: outward } 0 14 {E29R:C -> E52R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {E52R:G -> E29R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {E52R:G -> E53R:U: adjacent_5p upward } 0 17 {E53R:U -> E52R:G: adjacent_3p downward } 0 18 {E53R:U -> E54R:G: adjacent_5p upward } 0 19 {E54R:G -> E53R:U: adjacent_3p downward } 0 20 {E54R:G -> E55R:G: adjacent_5p upward } 0 21 {E55R:G -> E54R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E27R:C 0 1 E28R:A 0 2 E29R:C 0 3 E30R:C 0 4 E51R:G 0 5 E52R:G 0 6 E53R:U 0 7 E54R:G 0 [Edges] 0 {E27R:C -> E28R:A: adjacent_5p upward } 0 1 {E28R:A -> E27R:C: adjacent_3p downward } 0 2 {E27R:C -> E54R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E54R:G -> E27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E28R:A -> E29R:C: adjacent_5p upward } 0 5 {E29R:C -> E28R:A: adjacent_3p downward } 0 6 {E28R:A -> E53R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {E53R:U -> E28R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {E28R:A -> E54R:G: outward } 0 9 {E54R:G -> E28R:A: outward } 0 10 {E29R:C -> E30R:C: adjacent_5p upward } 0 11 {E30R:C -> E29R:C: adjacent_3p downward } 0 12 {E29R:C -> E52R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {E52R:G -> E29R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {E30R:C -> E51R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {E51R:G -> E30R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {E51R:G -> E52R:G: adjacent_5p upward } 0 17 {E52R:G -> E51R:G: adjacent_3p downward } 0 18 {E52R:G -> E53R:U: adjacent_5p upward } 0 19 {E53R:U -> E52R:G: adjacent_3p downward } 0 20 {E53R:U -> E54R:G: adjacent_5p upward } 0 21 {E54R:G -> E53R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 E28R:A 0 1 E29R:C 0 2 E30R:C 0 3 E31R:A 0 4 E50R:U 0 5 E51R:G 0 6 E52R:G 0 7 E53R:U 0 [Edges] 0 {E28R:A -> E29R:C: adjacent_5p upward } 0 1 {E29R:C -> E28R:A: adjacent_3p downward } 0 2 {E28R:A -> E53R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {E53R:U -> E28R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {E29R:C -> E30R:C: adjacent_5p upward } 0 5 {E30R:C -> E29R:C: adjacent_3p downward } 0 6 {E29R:C -> E52R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E52R:G -> E29R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E30R:C -> E31R:A: adjacent_5p upward } 0 9 {E31R:A -> E30R:C: adjacent_3p downward } 0 10 {E30R:C -> E51R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {E51R:G -> E30R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {E31R:A -> E50R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {E50R:U -> E31R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {E31R:A -> E51R:G: outward } 0 15 {E51R:G -> E31R:A: outward } 0 16 {E50R:U -> E51R:G: adjacent_5p upward } 0 17 {E51R:G -> E50R:U: adjacent_3p downward } 0 18 {E51R:G -> E52R:G: adjacent_5p upward } 0 19 {E52R:G -> E51R:G: adjacent_3p downward } 0 20 {E52R:G -> E53R:U: adjacent_5p upward } 0 21 {E53R:U -> E52R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E29R:C 0 1 E30R:C 0 2 E31R:A 0 3 E32R:A 0 4 E49R:U 0 5 E50R:U 0 6 E51R:G 0 7 E52R:G 0 [Edges] 0 {E29R:C -> E30R:C: adjacent_5p upward } 0 1 {E30R:C -> E29R:C: adjacent_3p downward } 0 2 {E29R:C -> E52R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E52R:G -> E29R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E30R:C -> E31R:A: adjacent_5p upward } 0 5 {E31R:A -> E30R:C: adjacent_3p downward } 0 6 {E30R:C -> E51R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E51R:G -> E30R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E31R:A -> E32R:A: adjacent_5p upward } 0 9 {E32R:A -> E31R:A: adjacent_3p downward } 0 10 {E31R:A -> E50R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {E50R:U -> E31R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {E31R:A -> E51R:G: outward } 0 13 {E51R:G -> E31R:A: outward } 0 14 {E32R:A -> E49R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {E49R:U -> E32R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {E49R:U -> E50R:U: adjacent_5p upward } 0 17 {E50R:U -> E49R:U: adjacent_3p downward } 0 18 {E50R:U -> E51R:G: adjacent_5p upward } 0 19 {E51R:G -> E50R:U: adjacent_3p downward } 0 20 {E51R:G -> E52R:G: adjacent_5p upward } 0 21 {E52R:G -> E51R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E30R:C 0 1 E31R:A 0 2 E32R:A 0 3 E33R:C 0 4 E48R:G 0 5 E49R:U 0 6 E50R:U 0 7 E51R:G 0 [Edges] 0 {E30R:C -> E31R:A: adjacent_5p upward } 0 1 {E31R:A -> E30R:C: adjacent_3p downward } 0 2 {E30R:C -> E51R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E51R:G -> E30R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E31R:A -> E32R:A: adjacent_5p upward } 0 5 {E32R:A -> E31R:A: adjacent_3p downward } 0 6 {E31R:A -> E50R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {E50R:U -> E31R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {E31R:A -> E51R:G: outward } 0 9 {E51R:G -> E31R:A: outward } 0 10 {E32R:A -> E33R:C: adjacent_5p upward } 0 11 {E33R:C -> E32R:A: adjacent_3p downward } 0 12 {E32R:A -> E49R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {E49R:U -> E32R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {E33R:C -> E48R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {E48R:G -> E33R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {E48R:G -> E49R:U: adjacent_5p upward } 0 17 {E49R:U -> E48R:G: adjacent_3p downward } 0 18 {E49R:U -> E50R:U: adjacent_5p upward } 0 19 {E50R:U -> E49R:U: adjacent_3p downward } 0 20 {E50R:U -> E51R:G: adjacent_5p upward } 0 21 {E51R:G -> E50R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 E31R:A 0 1 E32R:A 0 2 E33R:C 0 3 E34R:C 0 4 E47R:G 0 5 E48R:G 0 6 E49R:U 0 7 E50R:U 0 [Edges] 0 {E31R:A -> E32R:A: adjacent_5p upward } 0 1 {E32R:A -> E31R:A: adjacent_3p downward } 0 2 {E31R:A -> E50R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {E50R:U -> E31R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {E32R:A -> E33R:C: adjacent_5p upward } 0 5 {E33R:C -> E32R:A: adjacent_3p downward } 0 6 {E32R:A -> E49R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {E49R:U -> E32R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {E33R:C -> E34R:C: adjacent_5p upward } 0 9 {E34R:C -> E33R:C: adjacent_3p downward } 0 10 {E33R:C -> E48R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {E48R:G -> E33R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {E34R:C -> E47R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {E47R:G -> E34R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {E47R:G -> E48R:G: adjacent_5p upward } 0 15 {E48R:G -> E47R:G: adjacent_3p downward } 0 16 {E48R:G -> E49R:U: adjacent_5p upward } 0 17 {E49R:U -> E48R:G: adjacent_3p downward } 0 18 {E49R:U -> E50R:U: adjacent_5p upward } 0 19 {E50R:U -> E49R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E32R:A 0 1 E33R:C 0 2 E34R:C 0 3 E35R:C 0 4 E46R:G 0 5 E47R:G 0 6 E48R:G 0 7 E49R:U 0 [Edges] 0 {E32R:A -> E33R:C: adjacent_5p upward } 0 1 {E33R:C -> E32R:A: adjacent_3p downward } 0 2 {E32R:A -> E49R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {E49R:U -> E32R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {E33R:C -> E34R:C: adjacent_5p upward } 0 5 {E34R:C -> E33R:C: adjacent_3p downward } 0 6 {E33R:C -> E48R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E48R:G -> E33R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E34R:C -> E35R:C: adjacent_5p upward } 0 9 {E35R:C -> E34R:C: adjacent_3p downward } 0 10 {E34R:C -> E47R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {E47R:G -> E34R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {E35R:C -> E46R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {E46R:G -> E35R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {E46R:G -> E47R:G: adjacent_5p upward } 0 15 {E47R:G -> E46R:G: adjacent_3p downward } 0 16 {E47R:G -> E48R:G: adjacent_5p upward } 0 17 {E48R:G -> E47R:G: adjacent_3p downward } 0 18 {E48R:G -> E49R:U: adjacent_5p upward } 0 19 {E49R:U -> E48R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E69R:A 0 1 E70R:C 0 2 E71R:G 0 3 E72R:G 0 4 E81R:U 0 5 E82R:C 0 6 E83R:G 0 7 E84R:U 0 [Edges] 0 {E69R:A -> E70R:C: adjacent_5p upward } 0 1 {E70R:C -> E69R:A: adjacent_3p downward } 0 2 {E69R:A -> E84R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {E84R:U -> E69R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {E70R:C -> E71R:G: adjacent_5p upward } 0 5 {E71R:G -> E70R:C: adjacent_3p downward } 0 6 {E70R:C -> E83R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E83R:G -> E70R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E71R:G -> E72R:G: adjacent_5p upward } 0 9 {E72R:G -> E71R:G: adjacent_3p downward } 0 10 {E71R:G -> E82R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E82R:C -> E71R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E71R:G -> E83R:G: outward } 0 13 {E83R:G -> E71R:G: outward } 0 14 {E72R:G -> E81R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {E81R:U -> E72R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {E81R:U -> E82R:C: adjacent_5p upward } 0 17 {E82R:C -> E81R:U: adjacent_3p downward } 0 18 {E82R:C -> E83R:G: adjacent_5p } 0 19 {E83R:G -> E82R:C: adjacent_3p } 0 20 {E83R:G -> E84R:U: adjacent_5p upward } 0 21 {E84R:U -> E83R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E70R:C 0 1 E71R:G 0 2 E72R:G 0 3 E73R:G 0 4 E80R:U 0 5 E81R:U 0 6 E82R:C 0 7 E83R:G 0 [Edges] 0 {E70R:C -> E71R:G: adjacent_5p upward } 0 1 {E71R:G -> E70R:C: adjacent_3p downward } 0 2 {E70R:C -> E83R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E83R:G -> E70R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E71R:G -> E72R:G: adjacent_5p upward } 0 5 {E72R:G -> E71R:G: adjacent_3p downward } 0 6 {E71R:G -> E82R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E82R:C -> E71R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E71R:G -> E83R:G: outward } 0 9 {E83R:G -> E71R:G: outward } 0 10 {E72R:G -> E73R:G: adjacent_5p upward } 0 11 {E73R:G -> E72R:G: adjacent_3p downward } 0 12 {E72R:G -> E81R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {E81R:U -> E72R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {E73R:G -> E80R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 15 {E80R:U -> E73R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 16 {E80R:U -> E81R:U: adjacent_5p } 0 17 {E81R:U -> E80R:U: adjacent_3p } 0 18 {E81R:U -> E82R:C: adjacent_5p upward } 0 19 {E82R:C -> E81R:U: adjacent_3p downward } 0 20 {E82R:C -> E83R:G: adjacent_5p } 0 21 {E83R:G -> E82R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 E71R:G 0 1 E72R:G 0 2 E73R:G 0 3 E74R:G 0 4 E79R:C 0 5 E80R:U 0 6 E81R:U 0 7 E82R:C 0 [Edges] 0 {E71R:G -> E72R:G: adjacent_5p upward } 0 1 {E72R:G -> E71R:G: adjacent_3p downward } 0 2 {E71R:G -> E82R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E82R:C -> E71R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E72R:G -> E73R:G: adjacent_5p upward } 0 5 {E73R:G -> E72R:G: adjacent_3p downward } 0 6 {E72R:G -> E81R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {E81R:U -> E72R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {E73R:G -> E74R:G: adjacent_5p upward } 0 9 {E74R:G -> E73R:G: adjacent_3p downward } 0 10 {E73R:G -> E80R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 11 {E80R:U -> E73R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 12 {E74R:G -> E79R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 13 {E79R:C -> E74R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 14 {E79R:C -> E80R:U: adjacent_5p } 0 15 {E80R:U -> E79R:C: adjacent_3p } 0 16 {E80R:U -> E81R:U: adjacent_5p } 0 17 {E81R:U -> E80R:U: adjacent_3p } 0 18 {E81R:U -> E82R:C: adjacent_5p upward } 0 19 {E82R:C -> E81R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E72R:G 0 1 E73R:G 0 2 E74R:G 0 3 E75R:G 0 4 E78R:A 0 5 E79R:C 0 6 E80R:U 0 7 E81R:U 0 [Edges] 0 {E72R:G -> E73R:G: adjacent_5p upward } 0 1 {E73R:G -> E72R:G: adjacent_3p downward } 0 2 {E72R:G -> E81R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {E81R:U -> E72R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {E73R:G -> E74R:G: adjacent_5p upward } 0 5 {E74R:G -> E73R:G: adjacent_3p downward } 0 6 {E73R:G -> E80R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 7 {E80R:U -> E73R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 8 {E74R:G -> E75R:G: adjacent_5p upward } 0 9 {E75R:G -> E74R:G: adjacent_3p downward } 0 10 {E74R:G -> E79R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {E79R:C -> E74R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {E75R:G -> E78R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {E78R:A -> E75R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {E75R:G -> E79R:C: outward } 0 15 {E79R:C -> E75R:G: outward } 0 16 {E78R:A -> E79R:C: adjacent_5p } 0 17 {E79R:C -> E78R:A: adjacent_3p } 0 18 {E79R:C -> E80R:U: adjacent_5p } 0 19 {E80R:U -> E79R:C: adjacent_3p } 0 20 {E80R:U -> E81R:U: adjacent_5p } 0 21 {E81R:U -> E80R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A8R:A 0 1 A9R:C 0 2 A10R:U 0 3 A11R:C 0 4 A30R:G 0 5 A31R:A 0 6 A32R:G 0 7 A33R:G 0 [Edges] 0 {A8R:A -> A9R:C: adjacent_5p upward } 0 1 {A9R:C -> A8R:A: adjacent_3p downward } 0 2 {A8R:A -> A33R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {A33R:G -> A8R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A9R:C -> A10R:U: adjacent_5p upward } 0 5 {A10R:U -> A9R:C: adjacent_3p downward } 0 6 {A9R:C -> A32R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A32R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:U -> A11R:C: adjacent_5p upward } 0 9 {A11R:C -> A10R:U: adjacent_3p downward } 0 10 {A10R:U -> A31R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A31R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A11R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A30R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A30R:G -> A31R:A: adjacent_5p upward } 0 15 {A31R:A -> A30R:G: adjacent_3p downward } 0 16 {A31R:A -> A32R:G: adjacent_5p upward } 0 17 {A32R:G -> A31R:A: adjacent_3p downward } 0 18 {A32R:G -> A33R:G: adjacent_5p upward } 0 19 {A33R:G -> A32R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A9R:C 0 1 A10R:U 0 2 A11R:C 0 3 A12R:G 0 4 A29R:C 0 5 A30R:G 0 6 A31R:A 0 7 A32R:G 0 [Edges] 0 {A9R:C -> A10R:U: adjacent_5p upward } 0 1 {A10R:U -> A9R:C: adjacent_3p downward } 0 2 {A9R:C -> A32R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A32R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:U -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:U: adjacent_3p downward } 0 6 {A10R:U -> A31R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A31R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:C -> A12R:G: adjacent_5p upward } 0 9 {A12R:G -> A11R:C: adjacent_3p downward } 0 10 {A11R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A30R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A29R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A12R:G -> A30R:G: outward } 0 15 {A30R:G -> A12R:G: outward } 0 16 {A29R:C -> A30R:G: adjacent_5p } 0 17 {A30R:G -> A29R:C: adjacent_3p } 0 18 {A30R:G -> A31R:A: adjacent_5p upward } 0 19 {A31R:A -> A30R:G: adjacent_3p downward } 0 20 {A31R:A -> A32R:G: adjacent_5p upward } 0 21 {A32R:G -> A31R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:U 0 1 A11R:C 0 2 A12R:G 0 3 A13R:G 0 4 A28R:A 0 5 A29R:C 0 6 A30R:G 0 7 A31R:A 0 [Edges] 0 {A10R:U -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:U: adjacent_3p downward } 0 2 {A10R:U -> A31R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A31R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A11R:C -> A12R:G: adjacent_5p upward } 0 5 {A12R:G -> A11R:C: adjacent_3p downward } 0 6 {A11R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A30R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> A13R:G: adjacent_5p } 0 9 {A13R:G -> A12R:G: adjacent_3p } 0 10 {A12R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A29R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:G -> A30R:G: outward } 0 13 {A30R:G -> A12R:G: outward } 0 14 {A13R:G -> A28R:A: pairing antiparallel cis VIII Ww/Ww } 0 15 {A28R:A -> A13R:G: pairing antiparallel cis VIII Ww/Ww } 0 16 {A28R:A -> A29R:C: adjacent_5p } 0 17 {A29R:C -> A28R:A: adjacent_3p } 0 18 {A29R:C -> A30R:G: adjacent_5p } 0 19 {A30R:G -> A29R:C: adjacent_3p } 0 20 {A30R:G -> A31R:A: adjacent_5p upward } 0 21 {A31R:A -> A30R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A13R:G 0 1 A14R:C 0 2 A15R:U 0 3 A16R:U 0 4 A23R:A 0 5 A24R:A 0 6 A25R:G 0 7 A26R:G 0 [Edges] 0 {A13R:G -> A14R:C: adjacent_5p upward } 0 1 {A14R:C -> A13R:G: adjacent_3p downward } 0 2 {A13R:G -> A26R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 3 {A26R:G -> A13R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 4 {A14R:C -> A15R:U: adjacent_5p } 0 5 {A15R:U -> A14R:C: adjacent_3p } 0 6 {A14R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A25R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:C -> A26R:G: pairing antiparallel cis one_hbond 128 Ww/Bs } 0 9 {A26R:G -> A14R:C: pairing antiparallel cis one_hbond 128 Bs/Ww } 0 10 {A15R:U -> A16R:U: adjacent_5p } 0 11 {A16R:U -> A15R:U: adjacent_3p } 0 12 {A15R:U -> A24R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A24R:A -> A15R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A15R:U -> A25R:G: outward } 0 15 {A25R:G -> A15R:U: outward } 0 16 {A16R:U -> A23R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 17 {A23R:A -> A16R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 18 {A23R:A -> A24R:A: adjacent_5p upward } 0 19 {A24R:A -> A23R:A: adjacent_3p downward } 0 20 {A24R:A -> A25R:G: adjacent_5p upward } 0 21 {A25R:G -> A24R:A: adjacent_3p downward } 0 22 {A25R:G -> A26R:G: adjacent_5p upward } 0 23 {A26R:G -> A25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A14R:C 0 1 A15R:U 0 2 A16R:U 0 3 A17R:C 0 4 A22R:G 0 5 A23R:A 0 6 A24R:A 0 7 A25R:G 0 [Edges] 0 {A14R:C -> A15R:U: adjacent_5p } 0 1 {A15R:U -> A14R:C: adjacent_3p } 0 2 {A14R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A15R:U -> A16R:U: adjacent_5p } 0 5 {A16R:U -> A15R:U: adjacent_3p } 0 6 {A15R:U -> A24R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A24R:A -> A15R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A15R:U -> A25R:G: outward } 0 9 {A25R:G -> A15R:U: outward } 0 10 {A16R:U -> A17R:C: adjacent_5p upward } 0 11 {A17R:C -> A16R:U: adjacent_3p downward } 0 12 {A16R:U -> A23R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {A23R:A -> A16R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {A17R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A22R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A22R:G -> A23R:A: adjacent_5p upward } 0 17 {A23R:A -> A22R:G: adjacent_3p downward } 0 18 {A23R:A -> A24R:A: adjacent_5p upward } 0 19 {A24R:A -> A23R:A: adjacent_3p downward } 0 20 {A24R:A -> A25R:G: adjacent_5p upward } 0 21 {A25R:G -> A24R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A15R:U 0 1 A16R:U 0 2 A17R:C 0 3 A18R:U 0 4 A21R:G 0 5 A22R:G 0 6 A23R:A 0 7 A24R:A 0 [Edges] 0 {A15R:U -> A16R:U: adjacent_5p } 0 1 {A16R:U -> A15R:U: adjacent_3p } 0 2 {A15R:U -> A24R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A24R:A -> A15R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A16R:U -> A17R:C: adjacent_5p upward } 0 5 {A17R:C -> A16R:U: adjacent_3p downward } 0 6 {A16R:U -> A23R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {A23R:A -> A16R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A17R:C -> A18R:U: adjacent_5p upward } 0 9 {A18R:U -> A17R:C: adjacent_3p downward } 0 10 {A17R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A22R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A18R:U -> A21R:G: pairing parallel trans one_hbond 87 Bs/Ww } 0 13 {A21R:G -> A18R:U: pairing parallel trans one_hbond 87 Ww/Bs } 0 14 {A21R:G -> A22R:G: adjacent_5p outward } 0 15 {A22R:G -> A21R:G: adjacent_3p outward } 0 16 {A22R:G -> A23R:A: adjacent_5p upward } 0 17 {A23R:A -> A22R:G: adjacent_3p downward } 0 18 {A23R:A -> A24R:A: adjacent_5p upward } 0 19 {A24R:A -> A23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:A 0 3 A5R:G 0 4 A21R:U 0 5 A22R:U 0 6 A23R:U 0 7 A24R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A23R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {A23R:U -> A3R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {A4R:A -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A22R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A22R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:G -> A21R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A21R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A21R:U -> A22R:U: adjacent_5p } 0 15 {A22R:U -> A21R:U: adjacent_3p } 0 16 {A22R:U -> A23R:U: adjacent_5p upward } 0 17 {A23R:U -> A22R:U: adjacent_3p downward } 0 18 {A23R:U -> A24R:C: adjacent_5p } 0 19 {A24R:C -> A23R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:A 0 2 A5R:G 0 3 A6R:C 0 4 A20R:G 0 5 A21R:U 0 6 A22R:U 0 7 A23R:U 0 [Edges] 0 {A3R:A -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A23R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {A23R:U -> A3R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {A4R:A -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A22R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A22R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:G -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> A21R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A21R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A6R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A20R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A20R:G -> A21R:U: adjacent_5p upward } 0 15 {A21R:U -> A20R:G: adjacent_3p downward } 0 16 {A21R:U -> A22R:U: adjacent_5p } 0 17 {A22R:U -> A21R:U: adjacent_3p } 0 18 {A22R:U -> A23R:U: adjacent_5p upward } 0 19 {A23R:U -> A22R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:G 0 2 A6R:C 0 3 A7R:A 0 4 A19R:U 0 5 A20R:G 0 6 A21R:U 0 7 A22R:U 0 [Edges] 0 {A4R:A -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> A22R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A22R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:G -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> A21R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A21R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A6R:C -> A7R:A: adjacent_5p upward } 0 9 {A7R:A -> A6R:C: adjacent_3p downward } 0 10 {A6R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:A -> A19R:U: pairing antiparallel cis one_hbond Bs/Wh } 0 13 {A19R:U -> A7R:A: pairing antiparallel cis one_hbond Wh/Bs } 0 14 {A7R:A -> A20R:G: outward } 0 15 {A20R:G -> A7R:A: outward } 0 16 {A19R:U -> A20R:G: adjacent_5p upward } 0 17 {A20R:G -> A19R:U: adjacent_3p downward } 0 18 {A20R:G -> A21R:U: adjacent_5p upward } 0 19 {A21R:U -> A20R:G: adjacent_3p downward } 0 20 {A21R:U -> A22R:U: adjacent_5p } 0 21 {A22R:U -> A21R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:G 0 2 A10R:C 0 3 A11R:U 0 4 A14R:G 0 5 A15R:G 0 6 A16R:C 0 7 A17R:C 0 [Edges] 0 {A8R:G -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:G -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A16R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:C -> A11R:U: adjacent_5p upward } 0 9 {A11R:U -> A10R:C: adjacent_3p downward } 0 10 {A10R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A15R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A11R:U -> A14R:G: pairing parallel trans one_hbond Ws/Ww } 0 13 {A14R:G -> A11R:U: pairing parallel trans one_hbond Ww/Ws } 0 14 {A14R:G -> A15R:G: adjacent_5p outward } 0 15 {A15R:G -> A14R:G: adjacent_3p outward } 0 16 {A15R:G -> A16R:C: adjacent_5p upward } 0 17 {A16R:C -> A15R:G: adjacent_3p downward } 0 18 {A16R:C -> A17R:C: adjacent_5p } 0 19 {A17R:C -> A16R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:A 0 2 A5R:G 0 3 A6R:U 0 4 A17R:A 0 5 A18R:C 0 6 A19R:U 0 7 A20R:G 0 [Edges] 0 {A3R:C -> A4R:A: adjacent_5p } 0 1 {A4R:A -> A3R:C: adjacent_3p } 0 2 {A3R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A19R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A20R:G: outward } 0 9 {A20R:G -> A4R:A: outward } 0 10 {A5R:G -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:G: adjacent_3p downward } 0 12 {A5R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A18R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A17R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A17R:A -> A18R:C: adjacent_5p upward } 0 17 {A18R:C -> A17R:A: adjacent_3p downward } 0 18 {A18R:C -> A19R:U: adjacent_5p upward } 0 19 {A19R:U -> A18R:C: adjacent_3p downward } 0 20 {A19R:U -> A20R:G: adjacent_5p upward } 0 21 {A20R:G -> A19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:G 0 2 A6R:U 0 3 A7R:C 0 4 A16R:G 0 5 A17R:A 0 6 A18R:C 0 7 A19R:U 0 [Edges] 0 {A4R:A -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A19R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:G -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A18R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:U -> A7R:C: adjacent_5p upward } 0 9 {A7R:C -> A6R:U: adjacent_3p downward } 0 10 {A6R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A17R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A16R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A16R:G -> A17R:A: adjacent_5p upward } 0 15 {A17R:A -> A16R:G: adjacent_3p downward } 0 16 {A17R:A -> A18R:C: adjacent_5p upward } 0 17 {A18R:C -> A17R:A: adjacent_3p downward } 0 18 {A18R:C -> A19R:U: adjacent_5p upward } 0 19 {A19R:U -> A18R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:U 0 2 A7R:C 0 3 A8R:U 0 4 A15R:A 0 5 A16R:G 0 6 A17R:A 0 7 A18R:C 0 [Edges] 0 {A5R:G -> A6R:U: adjacent_5p upward } 0 1 {A6R:U -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A18R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:U -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:U: adjacent_3p downward } 0 6 {A6R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A17R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:C -> A8R:U: adjacent_5p upward } 0 9 {A8R:U -> A7R:C: adjacent_3p downward } 0 10 {A7R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A16R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A15R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A15R:A -> A16R:G: adjacent_5p upward } 0 15 {A16R:G -> A15R:A: adjacent_3p downward } 0 16 {A16R:G -> A17R:A: adjacent_5p upward } 0 17 {A17R:A -> A16R:G: adjacent_3p downward } 0 18 {A17R:A -> A18R:C: adjacent_5p upward } 0 19 {A18R:C -> A17R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:U 0 1 A7R:C 0 2 A8R:U 0 3 A9R:C 0 4 A14R:G 0 5 A15R:A 0 6 A16R:G 0 7 A17R:A 0 [Edges] 0 {A6R:U -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:U: adjacent_3p downward } 0 2 {A6R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A17R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:C -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:C: adjacent_3p downward } 0 6 {A7R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A16R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:U -> A9R:C: adjacent_5p } 0 9 {A9R:C -> A8R:U: adjacent_3p } 0 10 {A8R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A15R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A14R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:G -> A15R:A: adjacent_5p upward } 0 15 {A15R:A -> A14R:G: adjacent_3p downward } 0 16 {A15R:A -> A16R:G: adjacent_5p upward } 0 17 {A16R:G -> A15R:A: adjacent_3p downward } 0 18 {A16R:G -> A17R:A: adjacent_5p upward } 0 19 {A17R:A -> A16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:U 0 2 A9R:C 0 3 A10R:U 0 4 A13R:G 0 5 A14R:G 0 6 A15R:A 0 7 A16R:G 0 [Edges] 0 {A7R:C -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A16R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:U -> A9R:C: adjacent_5p } 0 5 {A9R:C -> A8R:U: adjacent_3p } 0 6 {A8R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A15R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:C -> A10R:U: adjacent_5p upward } 0 9 {A10R:U -> A9R:C: adjacent_3p downward } 0 10 {A9R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A14R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:U -> A13R:G: pairing parallel trans one_hbond Bs/Ww } 0 13 {A13R:G -> A10R:U: pairing parallel trans one_hbond Ww/Bs } 0 14 {A10R:U -> A14R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 15 {A14R:G -> A10R:U: pairing antiparallel cis one_hbond Wh/Ww } 0 16 {A13R:G -> A14R:G: adjacent_5p } 0 17 {A14R:G -> A13R:G: adjacent_3p } 0 18 {A14R:G -> A15R:A: adjacent_5p upward } 0 19 {A15R:A -> A14R:G: adjacent_3p downward } 0 20 {A15R:A -> A16R:G: adjacent_5p upward } 0 21 {A16R:G -> A15R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:G 0 2 A3R:C 0 3 A4R:G 0 4 A20R:C 0 5 A21R:G 0 6 A22R:C 0 7 A23R:C 0 [Edges] 0 {A1R:G -> A2R:G: adjacent_5p upward } 0 1 {A2R:G -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:G -> A3R:C: adjacent_5p upward } 0 5 {A3R:C -> A2R:G: adjacent_3p downward } 0 6 {A2R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:C -> A4R:G: adjacent_5p upward } 0 9 {A4R:G -> A3R:C: adjacent_3p downward } 0 10 {A3R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A21R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A4R:G -> A21R:G: outward } 0 15 {A21R:G -> A4R:G: outward } 0 16 {A20R:C -> A21R:G: adjacent_5p upward } 0 17 {A21R:G -> A20R:C: adjacent_3p downward } 0 18 {A21R:G -> A22R:C: adjacent_5p upward } 0 19 {A22R:C -> A21R:G: adjacent_3p downward } 0 20 {A22R:C -> A23R:C: adjacent_5p upward } 0 21 {A23R:C -> A22R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:G 0 4 A19R:C 0 5 A20R:C 0 6 A21R:G 0 7 A22R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A21R:G: outward } 0 13 {A21R:G -> A4R:G: outward } 0 14 {A5R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A19R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A19R:C -> A20R:C: adjacent_5p upward } 0 17 {A20R:C -> A19R:C: adjacent_3p downward } 0 18 {A20R:C -> A21R:G: adjacent_5p upward } 0 19 {A21R:G -> A20R:C: adjacent_3p downward } 0 20 {A21R:G -> A22R:C: adjacent_5p upward } 0 21 {A22R:C -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:G 0 3 A6R:U 0 4 A18R:A 0 5 A19R:C 0 6 A20R:C 0 7 A21R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A21R:G: outward } 0 9 {A21R:G -> A4R:G: outward } 0 10 {A5R:G -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:G: adjacent_3p downward } 0 12 {A5R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A18R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A18R:A -> A19R:C: adjacent_5p upward } 0 17 {A19R:C -> A18R:A: adjacent_3p downward } 0 18 {A19R:C -> A20R:C: adjacent_5p upward } 0 19 {A20R:C -> A19R:C: adjacent_3p downward } 0 20 {A20R:C -> A21R:G: adjacent_5p upward } 0 21 {A21R:G -> A20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A11R:A 0 1 A12R:G 0 2 A13R:G 0 3 A14R:C 0 4 A19R:G 0 5 A20R:C 0 6 A21R:C 0 7 A22R:U 0 [Edges] 0 {A11R:A -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:A: adjacent_3p downward } 0 2 {A11R:A -> A22R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {A22R:U -> A11R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {A12R:G -> A13R:G: adjacent_5p upward } 0 5 {A13R:G -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:G -> A14R:C: adjacent_5p upward } 0 9 {A14R:C -> A13R:G: adjacent_3p downward } 0 10 {A13R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A19R:G -> A20R:C: adjacent_5p upward } 0 15 {A20R:C -> A19R:G: adjacent_3p downward } 0 16 {A20R:C -> A21R:C: adjacent_5p upward } 0 17 {A21R:C -> A20R:C: adjacent_3p downward } 0 18 {A21R:C -> A22R:U: adjacent_5p upward } 0 19 {A22R:U -> A21R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 S2R:C 0 1 S3R:A 0 2 S4R:U 0 3 S5R:G 0 4 L10R:U 0 5 L11R:G 0 6 L12R:U 0 7 L13R:G 0 [Edges] 0 {L10R:U -> L11R:G: adjacent_5p } 0 1 {L11R:G -> L10R:U: adjacent_3p } 0 2 {L10R:U -> S5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {S5R:G -> L10R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {L11R:G -> L12R:U: adjacent_5p upward } 0 5 {L12R:U -> L11R:G: adjacent_3p downward } 0 6 {L11R:G -> S4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {S4R:U -> L11R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {L11R:G -> S5R:G: outward } 0 9 {S5R:G -> L11R:G: outward } 0 10 {L12R:U -> L13R:G: adjacent_5p upward } 0 11 {L13R:G -> L12R:U: adjacent_3p downward } 0 12 {L12R:U -> S3R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {S3R:A -> L12R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {L13R:G -> S2R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {S2R:C -> L13R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {L13R:G -> S3R:A: outward } 0 17 {S3R:A -> L13R:G: outward } 0 18 {S2R:C -> S3R:A: adjacent_5p upward } 0 19 {S3R:A -> S2R:C: adjacent_3p downward } 0 20 {S3R:A -> S4R:U: adjacent_5p upward } 0 21 {S4R:U -> S3R:A: adjacent_3p downward } 0 22 {S4R:U -> S5R:G: adjacent_5p } 0 23 {S5R:G -> S4R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 18 . . . . . 15 1 19 . 20 . . . 13 17 2 . 21 . 22 . 7 . . 3 . . 23 . 3 9 . . 4 . . . 2 . 0 . . 5 . . 6 8 1 . 4 . 6 . 12 . . . 5 . 10 7 14 16 . . . . 11 . [GraphModel] [Vertices] 0 S3R:A 0 1 S4R:U 0 2 S5R:G 0 3 S6R:C 0 4 L9R:G 0 5 L10R:U 0 6 L11R:G 0 7 L12R:U 0 [Edges] 0 {L9R:G -> L10R:U: adjacent_5p upward } 0 1 {L10R:U -> L9R:G: adjacent_3p downward } 0 2 {L9R:G -> S6R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {S6R:C -> L9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {L10R:U -> L11R:G: adjacent_5p } 0 5 {L11R:G -> L10R:U: adjacent_3p } 0 6 {L10R:U -> S5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {S5R:G -> L10R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {L11R:G -> L12R:U: adjacent_5p upward } 0 9 {L12R:U -> L11R:G: adjacent_3p downward } 0 10 {L11R:G -> S4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {S4R:U -> L11R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {L11R:G -> S5R:G: outward } 0 13 {S5R:G -> L11R:G: outward } 0 14 {L12R:U -> S3R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {S3R:A -> L12R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {S3R:A -> S4R:U: adjacent_5p upward } 0 17 {S4R:U -> S3R:A: adjacent_3p downward } 0 18 {S4R:U -> S5R:G: adjacent_5p } 0 19 {S5R:G -> S4R:U: adjacent_3p } 0 20 {S5R:G -> S6R:C: adjacent_5p upward } 0 21 {S6R:C -> S5R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . . 11 . 2 . 19 . 20 . 7 13 . 3 . . 21 . 3 . . . 4 . . . 2 . 0 . . 5 . . 6 . 1 . 4 . 6 . 10 12 . . 5 . 8 7 14 . . . . . 9 . [GraphModel] [Vertices] 0 S4R:U 0 1 S5R:G 0 2 S6R:C 0 3 S7R:G 0 4 L8R:A 0 5 L9R:G 0 6 L10R:U 0 7 L11R:G 0 [Edges] 0 {L8R:A -> L9R:G: adjacent_5p upward } 0 1 {L9R:G -> L8R:A: adjacent_3p downward } 0 2 {L8R:A -> S7R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {S7R:G -> L8R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {L9R:G -> L10R:U: adjacent_5p upward } 0 5 {L10R:U -> L9R:G: adjacent_3p downward } 0 6 {L9R:G -> S6R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {S6R:C -> L9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {L10R:U -> L11R:G: adjacent_5p } 0 9 {L11R:G -> L10R:U: adjacent_3p } 0 10 {L10R:U -> S5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {S5R:G -> L10R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {L11R:G -> S4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {S4R:U -> L11R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {L11R:G -> S5R:G: outward } 0 15 {S5R:G -> L11R:G: outward } 0 16 {S4R:U -> S5R:G: adjacent_5p } 0 17 {S5R:G -> S4R:U: adjacent_3p } 0 18 {S5R:G -> S6R:C: adjacent_5p upward } 0 19 {S6R:C -> S5R:G: adjacent_3p downward } 0 20 {S6R:C -> S7R:G: adjacent_5p upward } 0 21 {S7R:G -> S6R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 13 1 17 . 18 . . . 11 15 2 . 19 . 20 . 7 . . 3 . . 21 . 3 . . . 4 . . . 2 . 0 . . 5 . . 6 . 1 . 4 . 6 . 10 . . . 5 . 8 7 12 14 . . . . 9 . [GraphModel] [Vertices] 0 S5R:G 0 1 S6R:C 0 2 S7R:G 0 3 S8R:A 0 4 L7R:U 0 5 L8R:A 0 6 L9R:G 0 7 L10R:U 0 [Edges] 0 {L7R:U -> L8R:A: adjacent_5p upward } 0 1 {L8R:A -> L7R:U: adjacent_3p downward } 0 2 {L7R:U -> S8R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {S8R:A -> L7R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {L8R:A -> L9R:G: adjacent_5p upward } 0 5 {L9R:G -> L8R:A: adjacent_3p downward } 0 6 {L8R:A -> S7R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {S7R:G -> L8R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {L8R:A -> S8R:A: outward } 0 9 {S8R:A -> L8R:A: outward } 0 10 {L9R:G -> L10R:U: adjacent_5p upward } 0 11 {L10R:U -> L9R:G: adjacent_3p downward } 0 12 {L9R:G -> S6R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {S6R:C -> L9R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {L10R:U -> S5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {S5R:G -> L10R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {S5R:G -> S6R:C: adjacent_5p upward } 0 17 {S6R:C -> S5R:G: adjacent_3p downward } 0 18 {S6R:C -> S7R:G: adjacent_5p upward } 0 19 {S7R:G -> S6R:C: adjacent_3p downward } 0 20 {S7R:G -> S8R:A: adjacent_5p } 0 21 {S8R:A -> S7R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 16 . . . . . 15 1 17 . 18 . . . 13 . 2 . 19 . 20 . 7 . . 3 . . 21 . 3 9 . . 4 . . . 2 . 0 . . 5 . . 6 8 1 . 4 . 6 . 12 . . . 5 . 10 7 14 . . . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A2R:C 0 1 A3R:G 0 2 A4R:G 0 3 A5R:A 0 4 B12R:G 0 5 B13R:A 0 6 B14R:C 0 7 B15R:G 0 [Edges] 0 {A2R:C -> A3R:G: adjacent_5p } 0 1 {A3R:G -> A2R:C: adjacent_3p } 0 2 {A2R:C -> B15R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> B14R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B14R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:G -> B15R:G: outward } 0 9 {B15R:G -> A3R:G: outward } 0 10 {A4R:G -> A5R:A: adjacent_5p upward } 0 11 {A5R:A -> A4R:G: adjacent_3p downward } 0 12 {A4R:G -> B13R:A: pairing antiparallel cis VIII Ww/Ww } 0 13 {B13R:A -> A4R:G: pairing antiparallel cis VIII Ww/Ww } 0 14 {A5R:A -> B12R:G: pairing antiparallel cis VIII Ww/Ww } 0 15 {B12R:G -> A5R:A: pairing antiparallel cis VIII Ww/Ww } 0 16 {B12R:G -> B13R:A: adjacent_5p upward } 0 17 {B13R:A -> B12R:G: adjacent_3p downward } 0 18 {B13R:A -> B14R:C: adjacent_5p upward } 0 19 {B14R:C -> B13R:A: adjacent_3p downward } 0 20 {B14R:C -> B15R:G: adjacent_5p } 0 21 {B15R:G -> B14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:G 0 2 A5R:A 0 3 A6R:C 0 4 B11R:G 0 5 B12R:G 0 6 B13R:A 0 7 B14R:C 0 [Edges] 0 {A3R:G -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> B14R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B14R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B13R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {B13R:A -> A4R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A5R:A -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> B12R:G: pairing antiparallel cis VIII Ww/Ww } 0 11 {B12R:G -> A5R:A: pairing antiparallel cis VIII Ww/Ww } 0 12 {A6R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B11R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B11R:G -> B12R:G: adjacent_5p upward } 0 15 {B12R:G -> B11R:G: adjacent_3p downward } 0 16 {B12R:G -> B13R:A: adjacent_5p upward } 0 17 {B13R:A -> B12R:G: adjacent_3p downward } 0 18 {B13R:A -> B14R:C: adjacent_5p upward } 0 19 {B14R:C -> B13R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:C 0 3 A7R:G 0 4 B10R:C 0 5 B11R:G 0 6 B12R:G 0 7 B13R:A 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B13R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {B13R:A -> A4R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A5R:A -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> B12R:G: pairing antiparallel cis VIII Ww/Ww } 0 7 {B12R:G -> A5R:A: pairing antiparallel cis VIII Ww/Ww } 0 8 {A6R:C -> A7R:G: adjacent_5p } 0 9 {A7R:G -> A6R:C: adjacent_3p } 0 10 {A6R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B11R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B10R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:G -> B11R:G: outward } 0 15 {B11R:G -> A7R:G: outward } 0 16 {B10R:C -> B11R:G: adjacent_5p } 0 17 {B11R:G -> B10R:C: adjacent_3p } 0 18 {B11R:G -> B12R:G: adjacent_5p upward } 0 19 {B12R:G -> B11R:G: adjacent_3p downward } 0 20 {B12R:G -> B13R:A: adjacent_5p upward } 0 21 {B13R:A -> B12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C27R:G 0 1 C28R:C 0 2 C29R:A 0 3 C30R:C 0 4 C54R:G 0 5 C55R:U 0 6 C56R:G 0 7 C57R:C 0 [Edges] 0 {C27R:G -> C28R:C: adjacent_5p upward } 0 1 {C28R:C -> C27R:G: adjacent_3p downward } 0 2 {C27R:G -> C57R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C57R:C -> C27R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C28R:C -> C29R:A: adjacent_5p upward } 0 5 {C29R:A -> C28R:C: adjacent_3p downward } 0 6 {C28R:C -> C56R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C56R:G -> C28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C29R:A -> C30R:C: adjacent_5p upward } 0 9 {C30R:C -> C29R:A: adjacent_3p downward } 0 10 {C29R:A -> C55R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C55R:U -> C29R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C29R:A -> C56R:G: outward } 0 13 {C56R:G -> C29R:A: outward } 0 14 {C30R:C -> C54R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {C54R:G -> C30R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {C54R:G -> C55R:U: adjacent_5p upward } 0 17 {C55R:U -> C54R:G: adjacent_3p downward } 0 18 {C55R:U -> C56R:G: adjacent_5p } 0 19 {C56R:G -> C55R:U: adjacent_3p } 0 20 {C56R:G -> C57R:C: adjacent_5p upward } 0 21 {C57R:C -> C56R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C31R:C 0 1 C32R:U 0 2 C33R:G 0 3 C34R:A 0 4 C48R:U 0 5 C49R:C 0 6 C50R:A 0 7 C51R:G 0 [Edges] 0 {C31R:C -> C32R:U: adjacent_5p upward } 0 1 {C32R:U -> C31R:C: adjacent_3p downward } 0 2 {C31R:C -> C51R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C51R:G -> C31R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C32R:U -> C33R:G: adjacent_5p upward } 0 5 {C33R:G -> C32R:U: adjacent_3p downward } 0 6 {C32R:U -> C50R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C50R:A -> C32R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C33R:G -> C34R:A: adjacent_5p upward } 0 9 {C34R:A -> C33R:G: adjacent_3p downward } 0 10 {C33R:G -> C49R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C49R:C -> C33R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C33R:G -> C50R:A: outward } 0 13 {C50R:A -> C33R:G: outward } 0 14 {C34R:A -> C48R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {C48R:U -> C34R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {C48R:U -> C49R:C: adjacent_5p upward } 0 17 {C49R:C -> C48R:U: adjacent_3p downward } 0 18 {C49R:C -> C50R:A: adjacent_5p upward } 0 19 {C50R:A -> C49R:C: adjacent_3p downward } 0 20 {C50R:A -> C51R:G: adjacent_5p upward } 0 21 {C51R:G -> C50R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C36R:C 0 1 C37R:C 0 2 C38R:C 0 3 C39R:A 0 4 C46R:A 0 5 C47R:C 0 6 C48R:U 0 7 C49R:C 0 [Edges] 0 {C36R:C -> C37R:C: adjacent_5p } 0 1 {C37R:C -> C36R:C: adjacent_3p } 0 2 {C36R:C -> C49R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 3 {C49R:C -> C36R:C: pairing antiparallel cis one_hbond Ss/Wh } 0 4 {C37R:C -> C38R:C: adjacent_5p upward } 0 5 {C38R:C -> C37R:C: adjacent_3p downward } 0 6 {C38R:C -> C39R:A: adjacent_5p upward } 0 7 {C39R:A -> C38R:C: adjacent_3p downward } 0 8 {C39R:A -> C46R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 9 {C46R:A -> C39R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 10 {C46R:A -> C47R:C: adjacent_5p upward } 0 11 {C47R:C -> C46R:A: adjacent_3p downward } 0 12 {C47R:C -> C48R:U: adjacent_5p upward } 0 13 {C48R:U -> C47R:C: adjacent_3p downward } 0 14 {C48R:U -> C49R:C: adjacent_5p upward } 0 15 {C49R:C -> C48R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 . 6 . . . . . 13 . 14 7 3 . . . . . 15 . [GraphModel] [Vertices] 0 D27R:G 0 1 D28R:C 0 2 D29R:A 0 3 D30R:C 0 4 D54R:G 0 5 D55R:U 0 6 D56R:G 0 7 D57R:C 0 [Edges] 0 {D27R:G -> D28R:C: adjacent_5p upward } 0 1 {D28R:C -> D27R:G: adjacent_3p downward } 0 2 {D27R:G -> D57R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D57R:C -> D27R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D28R:C -> D29R:A: adjacent_5p } 0 5 {D29R:A -> D28R:C: adjacent_3p } 0 6 {D28R:C -> D56R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D56R:G -> D28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D29R:A -> D30R:C: adjacent_5p upward } 0 9 {D30R:C -> D29R:A: adjacent_3p downward } 0 10 {D29R:A -> D55R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D55R:U -> D29R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {D29R:A -> D56R:G: outward } 0 13 {D56R:G -> D29R:A: outward } 0 14 {D30R:C -> D54R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D54R:G -> D30R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D54R:G -> D55R:U: adjacent_5p upward } 0 17 {D55R:U -> D54R:G: adjacent_3p downward } 0 18 {D55R:U -> D56R:G: adjacent_5p } 0 19 {D56R:G -> D55R:U: adjacent_3p } 0 20 {D56R:G -> D57R:C: adjacent_5p upward } 0 21 {D57R:C -> D56R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D31R:C 0 1 D32R:U 0 2 D33R:G 0 3 D34R:A 0 4 D48R:U 0 5 D49R:C 0 6 D50R:A 0 7 D51R:G 0 [Edges] 0 {D31R:C -> D32R:U: adjacent_5p upward } 0 1 {D32R:U -> D31R:C: adjacent_3p downward } 0 2 {D31R:C -> D51R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D51R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D32R:U -> D33R:G: adjacent_5p upward } 0 5 {D33R:G -> D32R:U: adjacent_3p downward } 0 6 {D32R:U -> D50R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D50R:A -> D32R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D33R:G -> D34R:A: adjacent_5p upward } 0 9 {D34R:A -> D33R:G: adjacent_3p downward } 0 10 {D33R:G -> D49R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D49R:C -> D33R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D33R:G -> D50R:A: outward } 0 13 {D50R:A -> D33R:G: outward } 0 14 {D34R:A -> D48R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {D48R:U -> D34R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {D48R:U -> D49R:C: adjacent_5p upward } 0 17 {D49R:C -> D48R:U: adjacent_3p downward } 0 18 {D49R:C -> D50R:A: adjacent_5p } 0 19 {D50R:A -> D49R:C: adjacent_3p } 0 20 {D50R:A -> D51R:G: adjacent_5p upward } 0 21 {D51R:G -> D50R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C1052R:C 0 1 C1053R:U 0 2 C1054R:G 0 3 C1055R:G 0 4 C1104R:C 0 5 C1105R:C 0 6 C1106R:A 0 7 C1107R:G 0 [Edges] 0 {C1052R:C -> C1053R:U: adjacent_5p upward } 0 1 {C1053R:U -> C1052R:C: adjacent_3p downward } 0 2 {C1052R:C -> C1107R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C1107R:G -> C1052R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C1053R:U -> C1054R:G: adjacent_5p upward } 0 5 {C1054R:G -> C1053R:U: adjacent_3p downward } 0 6 {C1053R:U -> C1106R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C1106R:A -> C1053R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C1054R:G -> C1055R:G: adjacent_5p upward } 0 9 {C1055R:G -> C1054R:G: adjacent_3p downward } 0 10 {C1054R:G -> C1105R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C1105R:C -> C1054R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C1054R:G -> C1106R:A: outward } 0 13 {C1106R:A -> C1054R:G: outward } 0 14 {C1055R:G -> C1104R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C1104R:C -> C1055R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C1104R:C -> C1105R:C: adjacent_5p upward } 0 17 {C1105R:C -> C1104R:C: adjacent_3p downward } 0 18 {C1105R:C -> C1106R:A: adjacent_5p upward } 0 19 {C1106R:A -> C1105R:C: adjacent_3p downward } 0 20 {C1106R:A -> C1107R:G: adjacent_5p upward } 0 21 {C1107R:G -> C1106R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C1053R:U 0 1 C1054R:G 0 2 C1055R:G 0 3 C1056R:G 0 4 C1103R:A 0 5 C1104R:C 0 6 C1105R:C 0 7 C1106R:A 0 [Edges] 0 {C1053R:U -> C1054R:G: adjacent_5p upward } 0 1 {C1054R:G -> C1053R:U: adjacent_3p downward } 0 2 {C1053R:U -> C1106R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C1106R:A -> C1053R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C1054R:G -> C1055R:G: adjacent_5p upward } 0 5 {C1055R:G -> C1054R:G: adjacent_3p downward } 0 6 {C1054R:G -> C1105R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C1105R:C -> C1054R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C1054R:G -> C1106R:A: outward } 0 9 {C1106R:A -> C1054R:G: outward } 0 10 {C1055R:G -> C1056R:G: adjacent_5p upward } 0 11 {C1056R:G -> C1055R:G: adjacent_3p downward } 0 12 {C1055R:G -> C1104R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C1104R:C -> C1055R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C1056R:G -> C1103R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {C1103R:A -> C1056R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {C1103R:A -> C1104R:C: adjacent_5p upward } 0 17 {C1104R:C -> C1103R:A: adjacent_3p downward } 0 18 {C1104R:C -> C1105R:C: adjacent_5p upward } 0 19 {C1105R:C -> C1104R:C: adjacent_3p downward } 0 20 {C1105R:C -> C1106R:A: adjacent_5p upward } 0 21 {C1106R:A -> C1105R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C1059R:G 0 1 C1060R:U 0 2 C1061R:U 0 3 C1062R:G 0 4 C1076R:C 0 5 C1077R:A 0 6 C1078R:U 0 7 C1079R:C 0 [Edges] 0 {C1059R:G -> C1060R:U: adjacent_5p inward } 0 1 {C1060R:U -> C1059R:G: adjacent_3p inward } 0 2 {C1059R:G -> C1079R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C1079R:C -> C1059R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C1060R:U -> C1061R:U: adjacent_5p } 0 5 {C1061R:U -> C1060R:U: adjacent_3p } 0 6 {C1061R:U -> C1062R:G: adjacent_5p } 0 7 {C1062R:G -> C1061R:U: adjacent_3p } 0 8 {C1062R:G -> C1076R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {C1076R:C -> C1062R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {C1062R:G -> C1077R:A: outward } 0 11 {C1077R:A -> C1062R:G: outward } 0 12 {C1076R:C -> C1077R:A: adjacent_5p upward } 0 13 {C1077R:A -> C1076R:C: adjacent_3p downward } 0 14 {C1077R:A -> C1078R:U: adjacent_5p upward } 0 15 {C1078R:U -> C1077R:A: adjacent_3p downward } 0 16 {C1078R:U -> C1079R:C: adjacent_5p } 0 17 {C1079R:C -> C1078R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 10 . . 4 . . . 9 . 12 . . 5 . . . 11 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 C1062R:G 0 1 C1063R:G 0 2 C1064R:C 0 3 C1065R:U 0 4 C1073R:A 0 5 C1074R:G 0 6 C1075R:C 0 7 C1076R:C 0 [Edges] 0 {C1062R:G -> C1063R:G: adjacent_5p upward } 0 1 {C1063R:G -> C1062R:G: adjacent_3p downward } 0 2 {C1062R:G -> C1076R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C1076R:C -> C1062R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C1063R:G -> C1064R:C: adjacent_5p upward } 0 5 {C1064R:C -> C1063R:G: adjacent_3p downward } 0 6 {C1063R:G -> C1075R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C1075R:C -> C1063R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C1064R:C -> C1065R:U: adjacent_5p upward } 0 9 {C1065R:U -> C1064R:C: adjacent_3p downward } 0 10 {C1064R:C -> C1074R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C1074R:G -> C1064R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C1065R:U -> C1073R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 13 {C1073R:A -> C1065R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 14 {C1073R:A -> C1074R:G: adjacent_5p upward } 0 15 {C1074R:G -> C1073R:A: adjacent_3p downward } 0 16 {C1074R:G -> C1075R:C: adjacent_5p upward } 0 17 {C1075R:C -> C1074R:G: adjacent_3p downward } 0 18 {C1075R:C -> C1076R:C: adjacent_5p upward } 0 19 {C1076R:C -> C1075R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C1090R:U 0 1 C1091R:G 0 2 C1092R:C 0 3 C1093R:G 0 4 C1098R:A 0 5 C1099R:G 0 6 C1100R:C 0 7 C1101R:U 0 [Edges] 0 {C1090R:U -> C1091R:G: adjacent_5p upward } 0 1 {C1091R:G -> C1090R:U: adjacent_3p downward } 0 2 {C1090R:U -> C1101R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {C1101R:U -> C1090R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {C1091R:G -> C1092R:C: adjacent_5p upward } 0 5 {C1092R:C -> C1091R:G: adjacent_3p downward } 0 6 {C1091R:G -> C1100R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C1100R:C -> C1091R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C1092R:C -> C1093R:G: adjacent_5p upward } 0 9 {C1093R:G -> C1092R:C: adjacent_3p downward } 0 10 {C1092R:C -> C1099R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C1099R:G -> C1092R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C1093R:G -> C1098R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {C1098R:A -> C1093R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {C1098R:A -> C1099R:G: adjacent_5p upward } 0 15 {C1099R:G -> C1098R:A: adjacent_3p downward } 0 16 {C1099R:G -> C1100R:C: adjacent_5p upward } 0 17 {C1100R:C -> C1099R:G: adjacent_3p downward } 0 18 {C1100R:C -> C1101R:U: adjacent_5p upward } 0 19 {C1101R:U -> C1100R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D1052R:C 0 1 D1053R:U 0 2 D1054R:G 0 3 D1055R:G 0 4 D1104R:C 0 5 D1105R:C 0 6 D1106R:A 0 7 D1107R:G 0 [Edges] 0 {D1052R:C -> D1053R:U: adjacent_5p upward } 0 1 {D1053R:U -> D1052R:C: adjacent_3p downward } 0 2 {D1052R:C -> D1107R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D1107R:G -> D1052R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D1053R:U -> D1054R:G: adjacent_5p } 0 5 {D1054R:G -> D1053R:U: adjacent_3p } 0 6 {D1053R:U -> D1106R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D1106R:A -> D1053R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D1054R:G -> D1055R:G: adjacent_5p upward } 0 9 {D1055R:G -> D1054R:G: adjacent_3p downward } 0 10 {D1054R:G -> D1105R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D1105R:C -> D1054R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D1054R:G -> D1106R:A: outward } 0 13 {D1106R:A -> D1054R:G: outward } 0 14 {D1055R:G -> D1104R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D1104R:C -> D1055R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D1104R:C -> D1105R:C: adjacent_5p upward } 0 17 {D1105R:C -> D1104R:C: adjacent_3p downward } 0 18 {D1105R:C -> D1106R:A: adjacent_5p upward } 0 19 {D1106R:A -> D1105R:C: adjacent_3p downward } 0 20 {D1106R:A -> D1107R:G: adjacent_5p upward } 0 21 {D1107R:G -> D1106R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D1053R:U 0 1 D1054R:G 0 2 D1055R:G 0 3 D1056R:G 0 4 D1103R:A 0 5 D1104R:C 0 6 D1105R:C 0 7 D1106R:A 0 [Edges] 0 {D1053R:U -> D1054R:G: adjacent_5p } 0 1 {D1054R:G -> D1053R:U: adjacent_3p } 0 2 {D1053R:U -> D1106R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D1106R:A -> D1053R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D1054R:G -> D1055R:G: adjacent_5p upward } 0 5 {D1055R:G -> D1054R:G: adjacent_3p downward } 0 6 {D1054R:G -> D1105R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D1105R:C -> D1054R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D1054R:G -> D1106R:A: outward } 0 9 {D1106R:A -> D1054R:G: outward } 0 10 {D1055R:G -> D1056R:G: adjacent_5p upward } 0 11 {D1056R:G -> D1055R:G: adjacent_3p downward } 0 12 {D1055R:G -> D1104R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D1104R:C -> D1055R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D1056R:G -> D1103R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {D1103R:A -> D1056R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {D1103R:A -> D1104R:C: adjacent_5p upward } 0 17 {D1104R:C -> D1103R:A: adjacent_3p downward } 0 18 {D1104R:C -> D1105R:C: adjacent_5p upward } 0 19 {D1105R:C -> D1104R:C: adjacent_3p downward } 0 20 {D1105R:C -> D1106R:A: adjacent_5p upward } 0 21 {D1106R:A -> D1105R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D1059R:G 0 1 D1060R:U 0 2 D1061R:U 0 3 D1062R:G 0 4 D1076R:C 0 5 D1077R:A 0 6 D1078R:U 0 7 D1079R:C 0 [Edges] 0 {D1059R:G -> D1060R:U: adjacent_5p inward } 0 1 {D1060R:U -> D1059R:G: adjacent_3p inward } 0 2 {D1059R:G -> D1079R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D1079R:C -> D1059R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D1060R:U -> D1061R:U: adjacent_5p } 0 5 {D1061R:U -> D1060R:U: adjacent_3p } 0 6 {D1061R:U -> D1062R:G: adjacent_5p } 0 7 {D1062R:G -> D1061R:U: adjacent_3p } 0 8 {D1062R:G -> D1076R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {D1076R:C -> D1062R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {D1062R:G -> D1077R:A: outward } 0 11 {D1077R:A -> D1062R:G: outward } 0 12 {D1076R:C -> D1077R:A: adjacent_5p upward } 0 13 {D1077R:A -> D1076R:C: adjacent_3p downward } 0 14 {D1077R:A -> D1078R:U: adjacent_5p upward } 0 15 {D1078R:U -> D1077R:A: adjacent_3p downward } 0 16 {D1078R:U -> D1079R:C: adjacent_5p } 0 17 {D1079R:C -> D1078R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 10 . . 4 . . . 9 . 12 . . 5 . . . 11 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 D1062R:G 0 1 D1063R:G 0 2 D1064R:C 0 3 D1065R:U 0 4 D1073R:A 0 5 D1074R:G 0 6 D1075R:C 0 7 D1076R:C 0 [Edges] 0 {D1062R:G -> D1063R:G: adjacent_5p upward } 0 1 {D1063R:G -> D1062R:G: adjacent_3p downward } 0 2 {D1062R:G -> D1076R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D1076R:C -> D1062R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D1063R:G -> D1064R:C: adjacent_5p upward } 0 5 {D1064R:C -> D1063R:G: adjacent_3p downward } 0 6 {D1063R:G -> D1075R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D1075R:C -> D1063R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D1064R:C -> D1065R:U: adjacent_5p upward } 0 9 {D1065R:U -> D1064R:C: adjacent_3p downward } 0 10 {D1064R:C -> D1074R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D1074R:G -> D1064R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D1065R:U -> D1073R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 13 {D1073R:A -> D1065R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 14 {D1073R:A -> D1074R:G: adjacent_5p upward } 0 15 {D1074R:G -> D1073R:A: adjacent_3p downward } 0 16 {D1074R:G -> D1075R:C: adjacent_5p upward } 0 17 {D1075R:C -> D1074R:G: adjacent_3p downward } 0 18 {D1075R:C -> D1076R:C: adjacent_5p upward } 0 19 {D1076R:C -> D1075R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D1090R:U 0 1 D1091R:G 0 2 D1092R:C 0 3 D1093R:G 0 4 D1098R:A 0 5 D1099R:G 0 6 D1100R:C 0 7 D1101R:U 0 [Edges] 0 {D1090R:U -> D1091R:G: adjacent_5p upward } 0 1 {D1091R:G -> D1090R:U: adjacent_3p downward } 0 2 {D1090R:U -> D1101R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {D1101R:U -> D1090R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {D1091R:G -> D1092R:C: adjacent_5p upward } 0 5 {D1092R:C -> D1091R:G: adjacent_3p downward } 0 6 {D1091R:G -> D1100R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D1100R:C -> D1091R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D1092R:C -> D1093R:G: adjacent_5p upward } 0 9 {D1093R:G -> D1092R:C: adjacent_3p downward } 0 10 {D1092R:C -> D1099R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D1099R:G -> D1092R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D1093R:G -> D1098R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {D1098R:A -> D1093R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {D1098R:A -> D1099R:G: adjacent_5p upward } 0 15 {D1099R:G -> D1098R:A: adjacent_3p downward } 0 16 {D1099R:G -> D1100R:C: adjacent_5p upward } 0 17 {D1100R:C -> D1099R:G: adjacent_3p downward } 0 18 {D1100R:C -> D1101R:U: adjacent_5p upward } 0 19 {D1101R:U -> D1100R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A69R:G 0 1 A70R:G 0 2 A71R:U 0 3 A72R:G 0 4 A104R:A 0 5 A105R:G 0 6 A106R:C 0 7 A107R:C 0 [Edges] 0 {A69R:G -> A70R:G: adjacent_5p upward } 0 1 {A70R:G -> A69R:G: adjacent_3p downward } 0 2 {A69R:G -> A107R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A107R:C -> A69R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A70R:G -> A71R:U: adjacent_5p upward } 0 5 {A71R:U -> A70R:G: adjacent_3p downward } 0 6 {A70R:G -> A106R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A106R:C -> A70R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A71R:U -> A72R:G: adjacent_5p upward } 0 9 {A72R:G -> A71R:U: adjacent_3p downward } 0 10 {A71R:U -> A105R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A105R:G -> A71R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A72R:G -> A104R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A104R:A -> A72R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A104R:A -> A105R:G: adjacent_5p upward } 0 15 {A105R:G -> A104R:A: adjacent_3p downward } 0 16 {A105R:G -> A106R:C: adjacent_5p upward } 0 17 {A106R:C -> A105R:G: adjacent_3p downward } 0 18 {A106R:C -> A107R:C: adjacent_5p } 0 19 {A107R:C -> A106R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A70R:G 0 1 A71R:U 0 2 A72R:G 0 3 A73R:A 0 4 A103R:U 0 5 A104R:A 0 6 A105R:G 0 7 A106R:C 0 [Edges] 0 {A70R:G -> A71R:U: adjacent_5p upward } 0 1 {A71R:U -> A70R:G: adjacent_3p downward } 0 2 {A70R:G -> A106R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A106R:C -> A70R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A71R:U -> A72R:G: adjacent_5p upward } 0 5 {A72R:G -> A71R:U: adjacent_3p downward } 0 6 {A71R:U -> A105R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A105R:G -> A71R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A72R:G -> A73R:A: adjacent_5p } 0 9 {A73R:A -> A72R:G: adjacent_3p } 0 10 {A72R:G -> A104R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {A104R:A -> A72R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {A73R:A -> A103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 13 {A103R:U -> A73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 14 {A73R:A -> A104R:A: outward } 0 15 {A104R:A -> A73R:A: outward } 0 16 {A103R:U -> A104R:A: adjacent_5p upward } 0 17 {A104R:A -> A103R:U: adjacent_3p downward } 0 18 {A104R:A -> A105R:G: adjacent_5p upward } 0 19 {A105R:G -> A104R:A: adjacent_3p downward } 0 20 {A105R:G -> A106R:C: adjacent_5p upward } 0 21 {A106R:C -> A105R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A71R:U 0 1 A72R:G 0 2 A73R:A 0 3 A74R:C 0 4 A102R:A 0 5 A103R:U 0 6 A104R:A 0 7 A105R:G 0 [Edges] 0 {A71R:U -> A72R:G: adjacent_5p upward } 0 1 {A72R:G -> A71R:U: adjacent_3p downward } 0 2 {A71R:U -> A105R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A105R:G -> A71R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A72R:G -> A73R:A: adjacent_5p } 0 5 {A73R:A -> A72R:G: adjacent_3p } 0 6 {A72R:G -> A104R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {A104R:A -> A72R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {A73R:A -> A74R:C: adjacent_5p upward } 0 9 {A74R:C -> A73R:A: adjacent_3p downward } 0 10 {A73R:A -> A103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 11 {A103R:U -> A73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 12 {A73R:A -> A104R:A: outward } 0 13 {A104R:A -> A73R:A: outward } 0 14 {A74R:C -> A102R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 15 {A102R:A -> A74R:C: pairing antiparallel trans one_hbond Ww/Hw } 0 16 {A102R:A -> A103R:U: adjacent_5p upward } 0 17 {A103R:U -> A102R:A: adjacent_3p downward } 0 18 {A103R:U -> A104R:A: adjacent_5p upward } 0 19 {A104R:A -> A103R:U: adjacent_3p downward } 0 20 {A104R:A -> A105R:G: adjacent_5p upward } 0 21 {A105R:G -> A104R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A72R:G 0 1 A73R:A 0 2 A74R:C 0 3 A75R:G 0 4 A101R:A 0 5 A102R:A 0 6 A103R:U 0 7 A104R:A 0 [Edges] 0 {A72R:G -> A73R:A: adjacent_5p } 0 1 {A73R:A -> A72R:G: adjacent_3p } 0 2 {A72R:G -> A104R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {A104R:A -> A72R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {A73R:A -> A74R:C: adjacent_5p upward } 0 5 {A74R:C -> A73R:A: adjacent_3p downward } 0 6 {A73R:A -> A103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 7 {A103R:U -> A73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 8 {A73R:A -> A104R:A: outward } 0 9 {A104R:A -> A73R:A: outward } 0 10 {A74R:C -> A75R:G: adjacent_5p upward } 0 11 {A75R:G -> A74R:C: adjacent_3p downward } 0 12 {A74R:C -> A102R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 13 {A102R:A -> A74R:C: pairing antiparallel trans one_hbond Ww/Hw } 0 14 {A75R:G -> A101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 15 {A101R:A -> A75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 16 {A101R:A -> A102R:A: adjacent_5p upward } 0 17 {A102R:A -> A101R:A: adjacent_3p downward } 0 18 {A102R:A -> A103R:U: adjacent_5p upward } 0 19 {A103R:U -> A102R:A: adjacent_3p downward } 0 20 {A103R:U -> A104R:A: adjacent_5p upward } 0 21 {A104R:A -> A103R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A73R:A 0 1 A74R:C 0 2 A75R:G 0 3 A76R:A 0 4 A100R:A 0 5 A101R:A 0 6 A102R:A 0 7 A103R:U 0 [Edges] 0 {A73R:A -> A74R:C: adjacent_5p upward } 0 1 {A74R:C -> A73R:A: adjacent_3p downward } 0 2 {A73R:A -> A103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {A103R:U -> A73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {A74R:C -> A75R:G: adjacent_5p upward } 0 5 {A75R:G -> A74R:C: adjacent_3p downward } 0 6 {A74R:C -> A102R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 7 {A102R:A -> A74R:C: pairing antiparallel trans one_hbond Ww/Hw } 0 8 {A75R:G -> A76R:A: adjacent_5p upward } 0 9 {A76R:A -> A75R:G: adjacent_3p downward } 0 10 {A75R:G -> A101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {A101R:A -> A75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {A76R:A -> A100R:A: pairing antiparallel trans one_hbond Ww/Hw } 0 13 {A100R:A -> A76R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 14 {A100R:A -> A101R:A: adjacent_5p upward } 0 15 {A101R:A -> A100R:A: adjacent_3p downward } 0 16 {A101R:A -> A102R:A: adjacent_5p upward } 0 17 {A102R:A -> A101R:A: adjacent_3p downward } 0 18 {A102R:A -> A103R:U: adjacent_5p upward } 0 19 {A103R:U -> A102R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A74R:C 0 1 A75R:G 0 2 A76R:A 0 3 A77R:U 0 4 A99R:A 0 5 A100R:A 0 6 A101R:A 0 7 A102R:A 0 [Edges] 0 {A74R:C -> A75R:G: adjacent_5p upward } 0 1 {A75R:G -> A74R:C: adjacent_3p downward } 0 2 {A74R:C -> A102R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 3 {A102R:A -> A74R:C: pairing antiparallel trans one_hbond Ww/Hw } 0 4 {A75R:G -> A76R:A: adjacent_5p upward } 0 5 {A76R:A -> A75R:G: adjacent_3p downward } 0 6 {A75R:G -> A101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {A101R:A -> A75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A76R:A -> A77R:U: adjacent_5p upward } 0 9 {A77R:U -> A76R:A: adjacent_3p downward } 0 10 {A76R:A -> A100R:A: pairing antiparallel trans one_hbond Ww/Hw } 0 11 {A100R:A -> A76R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 12 {A77R:U -> A99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 13 {A99R:A -> A77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 14 {A99R:A -> A100R:A: adjacent_5p upward } 0 15 {A100R:A -> A99R:A: adjacent_3p downward } 0 16 {A100R:A -> A101R:A: adjacent_5p upward } 0 17 {A101R:A -> A100R:A: adjacent_3p downward } 0 18 {A101R:A -> A102R:A: adjacent_5p upward } 0 19 {A102R:A -> A101R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A76R:A 0 1 A77R:U 0 2 A78R:A 0 3 A79R:C 0 4 A97R:G 0 5 A98R:A 0 6 A99R:A 0 7 A100R:A 0 [Edges] 0 {A76R:A -> A77R:U: adjacent_5p upward } 0 1 {A77R:U -> A76R:A: adjacent_3p downward } 0 2 {A76R:A -> A100R:A: pairing antiparallel trans one_hbond Ww/Hw } 0 3 {A100R:A -> A76R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 4 {A77R:U -> A78R:A: adjacent_5p } 0 5 {A78R:A -> A77R:U: adjacent_3p } 0 6 {A77R:U -> A99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 7 {A99R:A -> A77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 8 {A78R:A -> A79R:C: adjacent_5p } 0 9 {A79R:C -> A78R:A: adjacent_3p } 0 10 {A78R:A -> A99R:A: outward } 0 11 {A99R:A -> A78R:A: outward } 0 12 {A79R:C -> A97R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A97R:G -> A79R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A97R:G -> A98R:A: adjacent_5p upward } 0 15 {A98R:A -> A97R:G: adjacent_3p downward } 0 16 {A98R:A -> A99R:A: adjacent_5p } 0 17 {A99R:A -> A98R:A: adjacent_3p } 0 18 {A99R:A -> A100R:A: adjacent_5p upward } 0 19 {A100R:A -> A99R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . 10 . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 11 . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A77R:U 0 1 A78R:A 0 2 A79R:C 0 3 A80R:U 0 4 A96R:G 0 5 A97R:G 0 6 A98R:A 0 7 A99R:A 0 [Edges] 0 {A77R:U -> A78R:A: adjacent_5p } 0 1 {A78R:A -> A77R:U: adjacent_3p } 0 2 {A77R:U -> A99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {A99R:A -> A77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {A78R:A -> A79R:C: adjacent_5p } 0 5 {A79R:C -> A78R:A: adjacent_3p } 0 6 {A78R:A -> A99R:A: outward } 0 7 {A99R:A -> A78R:A: outward } 0 8 {A79R:C -> A80R:U: adjacent_5p } 0 9 {A80R:U -> A79R:C: adjacent_3p } 0 10 {A79R:C -> A97R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A97R:G -> A79R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A80R:U -> A96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A96R:G -> A80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A96R:G -> A97R:G: adjacent_5p upward } 0 15 {A97R:G -> A96R:G: adjacent_3p downward } 0 16 {A97R:G -> A98R:A: adjacent_5p upward } 0 17 {A98R:A -> A97R:G: adjacent_3p downward } 0 18 {A98R:A -> A99R:A: adjacent_5p } 0 19 {A99R:A -> A98R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . 6 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . . . . . 17 . 18 7 3 7 . . . . 19 . [GraphModel] [Vertices] 0 A79R:C 0 1 A80R:U 0 2 A81R:G 0 3 A82R:U 0 4 A94R:G 0 5 A95R:C 0 6 A96R:G 0 7 A97R:G 0 [Edges] 0 {A79R:C -> A80R:U: adjacent_5p } 0 1 {A80R:U -> A79R:C: adjacent_3p } 0 2 {A79R:C -> A97R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A97R:G -> A79R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A80R:U -> A81R:G: adjacent_5p } 0 5 {A81R:G -> A80R:U: adjacent_3p } 0 6 {A80R:U -> A96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A96R:G -> A80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A81R:G -> A82R:U: adjacent_5p upward } 0 9 {A82R:U -> A81R:G: adjacent_3p downward } 0 10 {A81R:G -> A95R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A95R:C -> A81R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A81R:G -> A96R:G: outward } 0 13 {A96R:G -> A81R:G: outward } 0 14 {A82R:U -> A94R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A94R:G -> A82R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A94R:G -> A95R:C: adjacent_5p upward } 0 17 {A95R:C -> A94R:G: adjacent_3p downward } 0 18 {A95R:C -> A96R:G: adjacent_5p upward } 0 19 {A96R:G -> A95R:C: adjacent_3p downward } 0 20 {A96R:G -> A97R:G: adjacent_5p upward } 0 21 {A97R:G -> A96R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A80R:U 0 1 A81R:G 0 2 A82R:U 0 3 A83R:A 0 4 A93R:U 0 5 A94R:G 0 6 A95R:C 0 7 A96R:G 0 [Edges] 0 {A80R:U -> A81R:G: adjacent_5p } 0 1 {A81R:G -> A80R:U: adjacent_3p } 0 2 {A80R:U -> A96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A96R:G -> A80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A81R:G -> A82R:U: adjacent_5p upward } 0 5 {A82R:U -> A81R:G: adjacent_3p downward } 0 6 {A81R:G -> A95R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A95R:C -> A81R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A81R:G -> A96R:G: outward } 0 9 {A96R:G -> A81R:G: outward } 0 10 {A82R:U -> A83R:A: adjacent_5p } 0 11 {A83R:A -> A82R:U: adjacent_3p } 0 12 {A82R:U -> A94R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A94R:G -> A82R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A83R:A -> A93R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A93R:U -> A83R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A83R:A -> A94R:G: outward } 0 17 {A94R:G -> A83R:A: outward } 0 18 {A93R:U -> A94R:G: adjacent_5p } 0 19 {A94R:G -> A93R:U: adjacent_3p } 0 20 {A94R:G -> A95R:C: adjacent_5p upward } 0 21 {A95R:C -> A94R:G: adjacent_3p downward } 0 22 {A95R:C -> A96R:G: adjacent_5p upward } 0 23 {A96R:G -> A95R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A81R:G 0 1 A82R:U 0 2 A83R:A 0 3 A84R:G 0 4 A92R:C 0 5 A93R:U 0 6 A94R:G 0 7 A95R:C 0 [Edges] 0 {A81R:G -> A82R:U: adjacent_5p upward } 0 1 {A82R:U -> A81R:G: adjacent_3p downward } 0 2 {A81R:G -> A95R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A95R:C -> A81R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A82R:U -> A83R:A: adjacent_5p } 0 5 {A83R:A -> A82R:U: adjacent_3p } 0 6 {A82R:U -> A94R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A94R:G -> A82R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A83R:A -> A84R:G: adjacent_5p upward } 0 9 {A84R:G -> A83R:A: adjacent_3p downward } 0 10 {A83R:A -> A93R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A93R:U -> A83R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A83R:A -> A94R:G: outward } 0 13 {A94R:G -> A83R:A: outward } 0 14 {A84R:G -> A92R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A92R:C -> A84R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A92R:C -> A93R:U: adjacent_5p } 0 17 {A93R:U -> A92R:C: adjacent_3p } 0 18 {A93R:U -> A94R:G: adjacent_5p } 0 19 {A94R:G -> A93R:U: adjacent_3p } 0 20 {A94R:G -> A95R:C: adjacent_5p upward } 0 21 {A95R:C -> A94R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A82R:U 0 1 A83R:A 0 2 A84R:G 0 3 A85R:G 0 4 A91R:C 0 5 A92R:C 0 6 A93R:U 0 7 A94R:G 0 [Edges] 0 {A82R:U -> A83R:A: adjacent_5p } 0 1 {A83R:A -> A82R:U: adjacent_3p } 0 2 {A82R:U -> A94R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A94R:G -> A82R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A83R:A -> A84R:G: adjacent_5p upward } 0 5 {A84R:G -> A83R:A: adjacent_3p downward } 0 6 {A83R:A -> A93R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A93R:U -> A83R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A83R:A -> A94R:G: outward } 0 9 {A94R:G -> A83R:A: outward } 0 10 {A84R:G -> A85R:G: adjacent_5p upward } 0 11 {A85R:G -> A84R:G: adjacent_3p downward } 0 12 {A84R:G -> A92R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A92R:C -> A84R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A85R:G -> A91R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A91R:C -> A85R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A91R:C -> A92R:C: adjacent_5p } 0 17 {A92R:C -> A91R:C: adjacent_3p } 0 18 {A92R:C -> A93R:U: adjacent_5p } 0 19 {A93R:U -> A92R:C: adjacent_3p } 0 20 {A93R:U -> A94R:G: adjacent_5p } 0 21 {A94R:G -> A93R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A83R:A 0 1 A84R:G 0 2 A85R:G 0 3 A86R:C 0 4 A90R:G 0 5 A91R:C 0 6 A92R:C 0 7 A93R:U 0 [Edges] 0 {A83R:A -> A84R:G: adjacent_5p upward } 0 1 {A84R:G -> A83R:A: adjacent_3p downward } 0 2 {A83R:A -> A93R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A93R:U -> A83R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A84R:G -> A85R:G: adjacent_5p upward } 0 5 {A85R:G -> A84R:G: adjacent_3p downward } 0 6 {A84R:G -> A92R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A92R:C -> A84R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A85R:G -> A86R:C: adjacent_5p upward } 0 9 {A86R:C -> A85R:G: adjacent_3p downward } 0 10 {A85R:G -> A91R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A91R:C -> A85R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A86R:C -> A90R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A90R:G -> A86R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A90R:G -> A91R:C: adjacent_5p upward } 0 15 {A91R:C -> A90R:G: adjacent_3p downward } 0 16 {A91R:C -> A92R:C: adjacent_5p } 0 17 {A92R:C -> A91R:C: adjacent_3p } 0 18 {A92R:C -> A93R:U: adjacent_5p } 0 19 {A93R:U -> A92R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A84R:G 0 1 A85R:G 0 2 A86R:C 0 3 A87R:G 0 4 A89R:A 0 5 A90R:G 0 6 A91R:C 0 7 A92R:C 0 [Edges] 0 {A84R:G -> A85R:G: adjacent_5p upward } 0 1 {A85R:G -> A84R:G: adjacent_3p downward } 0 2 {A84R:G -> A92R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A92R:C -> A84R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A85R:G -> A86R:C: adjacent_5p upward } 0 5 {A86R:C -> A85R:G: adjacent_3p downward } 0 6 {A85R:G -> A91R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A91R:C -> A85R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A86R:C -> A87R:G: adjacent_5p upward } 0 9 {A87R:G -> A86R:C: adjacent_3p downward } 0 10 {A86R:C -> A90R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A90R:G -> A86R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A87R:G -> A89R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A89R:A -> A87R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A89R:A -> A90R:G: adjacent_5p upward } 0 15 {A90R:G -> A89R:A: adjacent_3p downward } 0 16 {A90R:G -> A91R:C: adjacent_5p upward } 0 17 {A91R:C -> A90R:G: adjacent_3p downward } 0 18 {A91R:C -> A92R:C: adjacent_5p } 0 19 {A92R:C -> A91R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2648R:G 0 1 A2649R:C 0 2 A2650R:U 0 3 A2651R:C 0 4 A2669R:G 0 5 A2670R:A 0 6 A2671R:G 0 7 A2672R:U 0 [Edges] 0 {A2648R:G -> A2649R:C: adjacent_5p upward } 0 1 {A2649R:C -> A2648R:G: adjacent_3p downward } 0 2 {A2648R:G -> A2672R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A2672R:U -> A2648R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A2649R:C -> A2650R:U: adjacent_5p upward } 0 5 {A2650R:U -> A2649R:C: adjacent_3p downward } 0 6 {A2649R:C -> A2671R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2671R:G -> A2649R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2650R:U -> A2651R:C: adjacent_5p } 0 9 {A2651R:C -> A2650R:U: adjacent_3p } 0 10 {A2650R:U -> A2670R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A2670R:A -> A2650R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A2651R:C -> A2669R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2669R:G -> A2651R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2669R:G -> A2670R:A: adjacent_5p upward } 0 15 {A2670R:A -> A2669R:G: adjacent_3p downward } 0 16 {A2670R:A -> A2671R:G: adjacent_5p upward } 0 17 {A2671R:G -> A2670R:A: adjacent_3p downward } 0 18 {A2671R:G -> A2672R:U: adjacent_5p upward } 0 19 {A2672R:U -> A2671R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2649R:C 0 1 A2650R:U 0 2 A2651R:C 0 3 A2652R:C 0 4 A2668R:G 0 5 A2669R:G 0 6 A2670R:A 0 7 A2671R:G 0 [Edges] 0 {A2649R:C -> A2650R:U: adjacent_5p upward } 0 1 {A2650R:U -> A2649R:C: adjacent_3p downward } 0 2 {A2649R:C -> A2671R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2671R:G -> A2649R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2650R:U -> A2651R:C: adjacent_5p } 0 5 {A2651R:C -> A2650R:U: adjacent_3p } 0 6 {A2650R:U -> A2670R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A2670R:A -> A2650R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A2651R:C -> A2652R:C: adjacent_5p upward } 0 9 {A2652R:C -> A2651R:C: adjacent_3p downward } 0 10 {A2651R:C -> A2669R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2669R:G -> A2651R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2652R:C -> A2668R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2668R:G -> A2652R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2668R:G -> A2669R:G: adjacent_5p upward } 0 15 {A2669R:G -> A2668R:G: adjacent_3p downward } 0 16 {A2669R:G -> A2670R:A: adjacent_5p upward } 0 17 {A2670R:A -> A2669R:G: adjacent_3p downward } 0 18 {A2670R:A -> A2671R:G: adjacent_5p upward } 0 19 {A2671R:G -> A2670R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2650R:U 0 1 A2651R:C 0 2 A2652R:C 0 3 A2653R:U 0 4 A2667R:C 0 5 A2668R:G 0 6 A2669R:G 0 7 A2670R:A 0 [Edges] 0 {A2650R:U -> A2651R:C: adjacent_5p } 0 1 {A2651R:C -> A2650R:U: adjacent_3p } 0 2 {A2650R:U -> A2670R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A2670R:A -> A2650R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A2651R:C -> A2652R:C: adjacent_5p upward } 0 5 {A2652R:C -> A2651R:C: adjacent_3p downward } 0 6 {A2651R:C -> A2669R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2669R:G -> A2651R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2652R:C -> A2653R:U: adjacent_5p upward } 0 9 {A2653R:U -> A2652R:C: adjacent_3p downward } 0 10 {A2652R:C -> A2668R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2668R:G -> A2652R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2653R:U -> A2667R:C: pairing antiparallel trans one_hbond 100 Ws/Bh } 0 13 {A2667R:C -> A2653R:U: pairing antiparallel trans one_hbond 100 Bh/Ws } 0 14 {A2667R:C -> A2668R:G: adjacent_5p upward } 0 15 {A2668R:G -> A2667R:C: adjacent_3p downward } 0 16 {A2668R:G -> A2669R:G: adjacent_5p upward } 0 17 {A2669R:G -> A2668R:G: adjacent_3p downward } 0 18 {A2669R:G -> A2670R:A: adjacent_5p upward } 0 19 {A2670R:A -> A2669R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2656R:U 0 1 A2657R:A 0 2 A2658R:C 0 3 A2659R:G 0 4 A2662R:A 0 5 A2663R:G 0 6 A2664R:G 0 7 A2665R:A 0 [Edges] 0 {A2656R:U -> A2657R:A: adjacent_5p upward } 0 1 {A2657R:A -> A2656R:U: adjacent_3p downward } 0 2 {A2656R:U -> A2665R:A: pairing antiparallel trans XXIV Ww/Hh } 0 3 {A2665R:A -> A2656R:U: pairing antiparallel trans XXIV Hh/Ww } 0 4 {A2657R:A -> A2658R:C: adjacent_5p upward } 0 5 {A2658R:C -> A2657R:A: adjacent_3p downward } 0 6 {A2657R:A -> A2664R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {A2664R:G -> A2657R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {A2657R:A -> A2665R:A: outward } 0 9 {A2665R:A -> A2657R:A: outward } 0 10 {A2658R:C -> A2659R:G: adjacent_5p upward } 0 11 {A2659R:G -> A2658R:C: adjacent_3p downward } 0 12 {A2658R:C -> A2663R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2663R:G -> A2658R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2659R:G -> A2662R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 15 {A2662R:A -> A2659R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 16 {A2659R:G -> A2663R:G: outward } 0 17 {A2663R:G -> A2659R:G: outward } 0 18 {A2662R:A -> A2663R:G: adjacent_5p } 0 19 {A2663R:G -> A2662R:A: adjacent_3p } 0 20 {A2663R:G -> A2664R:G: adjacent_5p upward } 0 21 {A2664R:G -> A2663R:G: adjacent_3p downward } 0 22 {A2664R:G -> A2665R:A: adjacent_5p } 0 23 {A2665R:A -> A2664R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:G 0 2 A3R:C 0 3 A4R:G 0 4 A21R:C 0 5 A22R:G 0 6 A23R:C 0 7 A24R:C 0 [Edges] 0 {A1R:G -> A2R:G: adjacent_5p upward } 0 1 {A2R:G -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:G -> A3R:C: adjacent_5p upward } 0 5 {A3R:C -> A2R:G: adjacent_3p downward } 0 6 {A2R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A23R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:C -> A4R:G: adjacent_5p upward } 0 9 {A4R:G -> A3R:C: adjacent_3p downward } 0 10 {A3R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A22R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A21R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A4R:G -> A22R:G: outward } 0 15 {A22R:G -> A4R:G: outward } 0 16 {A21R:C -> A22R:G: adjacent_5p upward } 0 17 {A22R:G -> A21R:C: adjacent_3p downward } 0 18 {A22R:G -> A23R:C: adjacent_5p upward } 0 19 {A23R:C -> A22R:G: adjacent_3p downward } 0 20 {A23R:C -> A24R:C: adjacent_5p upward } 0 21 {A24R:C -> A23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:U 0 4 A20R:A 0 5 A21R:C 0 6 A22R:G 0 7 A23R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A21R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A22R:G: outward } 0 13 {A22R:G -> A4R:G: outward } 0 14 {A5R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A20R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A20R:A -> A21R:C: adjacent_5p upward } 0 17 {A21R:C -> A20R:A: adjacent_3p downward } 0 18 {A21R:C -> A22R:G: adjacent_5p upward } 0 19 {A22R:G -> A21R:C: adjacent_3p downward } 0 20 {A22R:G -> A23R:C: adjacent_5p upward } 0 21 {A23R:C -> A22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:U 0 3 A6R:A 0 4 A19R:U 0 5 A20R:A 0 6 A21R:C 0 7 A22R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A22R:G: outward } 0 9 {A22R:G -> A4R:G: outward } 0 10 {A5R:U -> A6R:A: adjacent_5p upward } 0 11 {A6R:A -> A5R:U: adjacent_3p downward } 0 12 {A5R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A20R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A6R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A6R:A -> A20R:A: outward } 0 17 {A20R:A -> A6R:A: outward } 0 18 {A19R:U -> A20R:A: adjacent_5p } 0 19 {A20R:A -> A19R:U: adjacent_3p } 0 20 {A20R:A -> A21R:C: adjacent_5p upward } 0 21 {A21R:C -> A20R:A: adjacent_3p downward } 0 22 {A21R:C -> A22R:G: adjacent_5p upward } 0 23 {A22R:G -> A21R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:U 0 2 A6R:A 0 3 A7R:A 0 4 A18R:U 0 5 A19R:U 0 6 A20R:A 0 7 A21R:C 0 [Edges] 0 {A4R:G -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:A: adjacent_5p upward } 0 5 {A6R:A -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A20R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:A -> A7R:A: adjacent_5p upward } 0 9 {A7R:A -> A6R:A: adjacent_3p downward } 0 10 {A6R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:A -> A20R:A: outward } 0 13 {A20R:A -> A6R:A: outward } 0 14 {A7R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A18R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A18R:U -> A19R:U: adjacent_5p upward } 0 17 {A19R:U -> A18R:U: adjacent_3p downward } 0 18 {A19R:U -> A20R:A: adjacent_5p } 0 19 {A20R:A -> A19R:U: adjacent_3p } 0 20 {A20R:A -> A21R:C: adjacent_5p upward } 0 21 {A21R:C -> A20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:A 0 2 A7R:A 0 3 A8R:C 0 4 A17R:G 0 5 A18R:U 0 6 A19R:U 0 7 A20R:A 0 [Edges] 0 {A5R:U -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:U: adjacent_3p downward } 0 2 {A5R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A20R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:A -> A7R:A: adjacent_5p upward } 0 5 {A7R:A -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:A -> A20R:A: outward } 0 9 {A20R:A -> A6R:A: outward } 0 10 {A7R:A -> A8R:C: adjacent_5p upward } 0 11 {A8R:C -> A7R:A: adjacent_3p downward } 0 12 {A7R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A18R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A8R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A17R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A17R:G -> A18R:U: adjacent_5p upward } 0 17 {A18R:U -> A17R:G: adjacent_3p downward } 0 18 {A18R:U -> A19R:U: adjacent_5p upward } 0 19 {A19R:U -> A18R:U: adjacent_3p downward } 0 20 {A19R:U -> A20R:A: adjacent_5p } 0 21 {A20R:A -> A19R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:A 0 2 A8R:C 0 3 A9R:G 0 4 A16R:A 0 5 A17R:G 0 6 A18R:U 0 7 A19R:U 0 [Edges] 0 {A6R:A -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:A -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:A: adjacent_3p downward } 0 6 {A7R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A18R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A8R:C -> A9R:G: adjacent_5p upward } 0 9 {A9R:G -> A8R:C: adjacent_3p downward } 0 10 {A8R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:G -> A16R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A16R:A -> A9R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A16R:A -> A17R:G: adjacent_5p upward } 0 15 {A17R:G -> A16R:A: adjacent_3p downward } 0 16 {A17R:G -> A18R:U: adjacent_5p upward } 0 17 {A18R:U -> A17R:G: adjacent_3p downward } 0 18 {A18R:U -> A19R:U: adjacent_5p upward } 0 19 {A19R:U -> A18R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:A 0 3 A5R:A 0 4 B4R:A 0 5 B5R:A 0 6 B6R:G 0 7 B7R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B7R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B6R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A5R:A: adjacent_5p } 0 9 {A5R:A -> A4R:A: adjacent_3p } 0 10 {A4R:A -> B4R:A: inward } 0 11 {B4R:A -> A4R:A: inward } 0 12 {A4R:A -> B5R:A: pairing antiparallel trans 41 Ss/Hh } 0 13 {B5R:A -> A4R:A: pairing antiparallel trans 41 Hh/Ss } 0 14 {A5R:A -> B4R:A: pairing antiparallel trans 41 Hh/Ss } 0 15 {B4R:A -> A5R:A: pairing antiparallel trans 41 Ss/Hh } 0 16 {A5R:A -> B5R:A: outward } 0 17 {B5R:A -> A5R:A: outward } 0 18 {B4R:A -> B5R:A: adjacent_5p } 0 19 {B5R:A -> B4R:A: adjacent_3p } 0 20 {B5R:A -> B6R:G: adjacent_5p upward } 0 21 {B6R:G -> B5R:A: adjacent_3p downward } 0 22 {B6R:G -> B7R:C: adjacent_5p upward } 0 23 {B7R:C -> B6R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 12 . . 3 . . 9 . 14 16 . . 4 . . 11 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:A 0 2 A5R:A 0 3 A6R:G 0 4 B3R:C 0 5 B4R:A 0 6 B5R:A 0 7 B6R:G 0 [Edges] 0 {A3R:C -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B6R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:A: adjacent_5p } 0 5 {A5R:A -> A4R:A: adjacent_3p } 0 6 {A4R:A -> B4R:A: inward } 0 7 {B4R:A -> A4R:A: inward } 0 8 {A4R:A -> B5R:A: pairing antiparallel trans 41 Ss/Hh } 0 9 {B5R:A -> A4R:A: pairing antiparallel trans 41 Hh/Ss } 0 10 {A5R:A -> A6R:G: adjacent_5p upward } 0 11 {A6R:G -> A5R:A: adjacent_3p downward } 0 12 {A5R:A -> B4R:A: pairing antiparallel trans 41 Hh/Ss } 0 13 {B4R:A -> A5R:A: pairing antiparallel trans 41 Ss/Hh } 0 14 {A5R:A -> B5R:A: outward } 0 15 {B5R:A -> A5R:A: outward } 0 16 {A6R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {B3R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {B3R:C -> B4R:A: adjacent_5p upward } 0 19 {B4R:A -> B3R:C: adjacent_3p downward } 0 20 {B4R:A -> B5R:A: adjacent_5p } 0 21 {B5R:A -> B4R:A: adjacent_3p } 0 22 {B5R:A -> B6R:G: adjacent_5p upward } 0 23 {B6R:G -> B5R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . 7 13 . 19 . 20 . 6 . 9 15 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:A 0 2 A6R:G 0 3 A7R:C 0 4 B2R:G 0 5 B3R:C 0 6 B4R:A 0 7 B5R:A 0 [Edges] 0 {A4R:A -> A5R:A: adjacent_5p } 0 1 {A5R:A -> A4R:A: adjacent_3p } 0 2 {A4R:A -> B4R:A: inward } 0 3 {B4R:A -> A4R:A: inward } 0 4 {A4R:A -> B5R:A: pairing antiparallel trans 41 Ss/Hh } 0 5 {B5R:A -> A4R:A: pairing antiparallel trans 41 Hh/Ss } 0 6 {A5R:A -> A6R:G: adjacent_5p upward } 0 7 {A6R:G -> A5R:A: adjacent_3p downward } 0 8 {A5R:A -> B4R:A: pairing antiparallel trans 41 Hh/Ss } 0 9 {B4R:A -> A5R:A: pairing antiparallel trans 41 Ss/Hh } 0 10 {A5R:A -> B5R:A: outward } 0 11 {B5R:A -> A5R:A: outward } 0 12 {A6R:G -> A7R:C: adjacent_5p upward } 0 13 {A7R:C -> A6R:G: adjacent_3p downward } 0 14 {A6R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B3R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A7R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 17 {B2R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 18 {B2R:G -> B3R:C: adjacent_5p upward } 0 19 {B3R:C -> B2R:G: adjacent_3p downward } 0 20 {B3R:C -> B4R:A: adjacent_5p upward } 0 21 {B4R:A -> B3R:C: adjacent_3p downward } 0 22 {B4R:A -> B5R:A: adjacent_5p } 0 23 {B5R:A -> B4R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 18 . . 5 . . 15 . 19 . 20 . 6 3 9 . . . 21 . 22 7 5 11 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:A 0 3 A5R:G 0 4 B12R:A 0 5 B13R:G 0 6 B14R:G 0 7 B15R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B14R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> B13R:G: pairing antiparallel cis VIII Ww/Ww } 0 11 {B13R:G -> A4R:A: pairing antiparallel cis VIII Ww/Ww } 0 12 {A5R:G -> B12R:A: pairing antiparallel cis VIII Ww/Ww } 0 13 {B12R:A -> A5R:G: pairing antiparallel cis VIII Ww/Ww } 0 14 {B12R:A -> B13R:G: adjacent_5p upward } 0 15 {B13R:G -> B12R:A: adjacent_3p downward } 0 16 {B13R:G -> B14R:G: adjacent_5p upward } 0 17 {B14R:G -> B13R:G: adjacent_3p downward } 0 18 {B14R:G -> B15R:C: adjacent_5p upward } 0 19 {B15R:C -> B14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:A 0 2 A5R:G 0 3 A6R:G 0 4 B11R:C 0 5 B12R:A 0 6 B13R:G 0 7 B14R:G 0 [Edges] 0 {A3R:C -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B14R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> B13R:G: pairing antiparallel cis VIII Ww/Ww } 0 7 {B13R:G -> A4R:A: pairing antiparallel cis VIII Ww/Ww } 0 8 {A5R:G -> A6R:G: adjacent_5p upward } 0 9 {A6R:G -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> B12R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {B12R:A -> A5R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {A6R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B11R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B11R:C -> B12R:A: adjacent_5p upward } 0 15 {B12R:A -> B11R:C: adjacent_3p downward } 0 16 {B12R:A -> B13R:G: adjacent_5p upward } 0 17 {B13R:G -> B12R:A: adjacent_3p downward } 0 18 {B13R:G -> B14R:G: adjacent_5p upward } 0 19 {B14R:G -> B13R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:G 0 2 A6R:G 0 3 A7R:C 0 4 B10R:G 0 5 B11R:C 0 6 B12R:A 0 7 B13R:G 0 [Edges] 0 {A4R:A -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> B13R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {B13R:G -> A4R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A5R:G -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> B12R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {B12R:A -> A5R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A6R:G -> A7R:C: adjacent_5p upward } 0 9 {A7R:C -> A6R:G: adjacent_3p downward } 0 10 {A6R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B11R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B10R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B10R:G -> B11R:C: adjacent_5p upward } 0 15 {B11R:C -> B10R:G: adjacent_3p downward } 0 16 {B11R:C -> B12R:A: adjacent_5p upward } 0 17 {B12R:A -> B11R:C: adjacent_3p downward } 0 18 {B12R:A -> B13R:G: adjacent_5p upward } 0 19 {B13R:G -> B12R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:G 0 3 A5R:G 0 4 A11R:G 0 5 A12R:A 0 6 A13R:G 0 7 A14R:G 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p } 0 1 {A3R:A -> A2R:G: adjacent_3p } 0 2 {A2R:G -> A14R:G: pairing parallel cis one_hbond Hh/Ws } 0 3 {A14R:G -> A2R:G: pairing parallel cis one_hbond Ws/Hh } 0 4 {A3R:A -> A4R:G: adjacent_5p } 0 5 {A4R:G -> A3R:A: adjacent_3p } 0 6 {A4R:G -> A5R:G: adjacent_5p } 0 7 {A5R:G -> A4R:G: adjacent_3p } 0 8 {A5R:G -> A11R:G: pairing parallel cis VI Ww/Hh } 0 9 {A11R:G -> A5R:G: pairing parallel cis VI Hh/Ww } 0 10 {A11R:G -> A12R:A: adjacent_5p } 0 11 {A12R:A -> A11R:G: adjacent_3p } 0 12 {A11R:G -> A14R:G: pairing parallel cis one_hbond Ws/Hh } 0 13 {A14R:G -> A11R:G: pairing parallel cis one_hbond Hh/Ws } 0 14 {A12R:A -> A13R:G: adjacent_5p } 0 15 {A13R:G -> A12R:A: adjacent_3p } 0 16 {A13R:G -> A14R:G: adjacent_5p } 0 17 {A14R:G -> A13R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . 12 5 . . . . 11 . 14 . 6 . . . . . 15 . 16 7 3 . . . 13 . 17 . [GraphModel] [Vertices] 0 B16R:G 0 1 B17R:A 0 2 B18R:G 0 3 B19R:G 0 4 B25R:G 0 5 B26R:A 0 6 B27R:G 0 7 B28R:G 0 [Edges] 0 {B16R:G -> B17R:A: adjacent_5p } 0 1 {B17R:A -> B16R:G: adjacent_3p } 0 2 {B16R:G -> B19R:G: pairing parallel cis VI Ww/Hh } 0 3 {B19R:G -> B16R:G: pairing parallel cis VI Hh/Ww } 0 4 {B16R:G -> B28R:G: pairing parallel cis one_hbond Hh/Ws } 0 5 {B28R:G -> B16R:G: pairing parallel cis one_hbond Ws/Hh } 0 6 {B17R:A -> B18R:G: adjacent_5p } 0 7 {B18R:G -> B17R:A: adjacent_3p } 0 8 {B18R:G -> B19R:G: adjacent_5p } 0 9 {B19R:G -> B18R:G: adjacent_3p } 0 10 {B19R:G -> B25R:G: pairing parallel cis one_hbond Ww/Hh } 0 11 {B25R:G -> B19R:G: pairing parallel cis one_hbond Hh/Ww } 0 12 {B25R:G -> B26R:A: adjacent_5p } 0 13 {B26R:A -> B25R:G: adjacent_3p } 0 14 {B25R:G -> B28R:G: pairing parallel cis one_hbond Ws/Hh } 0 15 {B28R:G -> B25R:G: pairing parallel cis one_hbond Hh/Ws } 0 16 {B26R:A -> B27R:G: adjacent_5p } 0 17 {B27R:G -> B26R:A: adjacent_3p } 0 18 {B27R:G -> B28R:G: adjacent_5p } 0 19 {B28R:G -> B27R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . 2 . . . 4 1 1 . 6 . . . . . 2 . 7 . 8 . . . . 3 3 . 9 . 10 . . . 4 . . . 11 . 12 . 14 5 . . . . 13 . 16 . 6 . . . . . 17 . 18 7 5 . . . 15 . 19 . MOLECULE: [GraphModel] [Vertices] 0 B1R:G 0 1 B2R:G 0 2 B3R:G 0 3 B4R:A 0 4 B52R:U 0 5 B53R:C 0 6 B54R:C 0 7 B55R:C 0 [Edges] 0 {B1R:G -> B2R:G: adjacent_5p upward } 0 1 {B2R:G -> B1R:G: adjacent_3p downward } 0 2 {B1R:G -> B55R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B55R:C -> B1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B2R:G -> B3R:G: adjacent_5p upward } 0 5 {B3R:G -> B2R:G: adjacent_3p downward } 0 6 {B2R:G -> B54R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B54R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B3R:G -> B4R:A: adjacent_5p upward } 0 9 {B4R:A -> B3R:G: adjacent_3p downward } 0 10 {B3R:G -> B53R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B53R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B4R:A -> B52R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B52R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B52R:U -> B53R:C: adjacent_5p } 0 15 {B53R:C -> B52R:U: adjacent_3p } 0 16 {B53R:C -> B54R:C: adjacent_5p } 0 17 {B54R:C -> B53R:C: adjacent_3p } 0 18 {B54R:C -> B55R:C: adjacent_5p upward } 0 19 {B55R:C -> B54R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B2R:G 0 1 B3R:G 0 2 B4R:A 0 3 B5R:U 0 4 B51R:U 0 5 B52R:U 0 6 B53R:C 0 7 B54R:C 0 [Edges] 0 {B2R:G -> B3R:G: adjacent_5p upward } 0 1 {B3R:G -> B2R:G: adjacent_3p downward } 0 2 {B2R:G -> B54R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B54R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B3R:G -> B4R:A: adjacent_5p upward } 0 5 {B4R:A -> B3R:G: adjacent_3p downward } 0 6 {B3R:G -> B53R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B53R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B4R:A -> B5R:U: adjacent_5p upward } 0 9 {B5R:U -> B4R:A: adjacent_3p downward } 0 10 {B4R:A -> B52R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B52R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B5R:U -> B51R:U: pairing antiparallel cis XVI Ws/Ww } 0 13 {B51R:U -> B5R:U: pairing antiparallel cis XVI Ww/Ws } 0 14 {B51R:U -> B52R:U: adjacent_5p upward } 0 15 {B52R:U -> B51R:U: adjacent_3p downward } 0 16 {B52R:U -> B53R:C: adjacent_5p } 0 17 {B53R:C -> B52R:U: adjacent_3p } 0 18 {B53R:C -> B54R:C: adjacent_5p } 0 19 {B54R:C -> B53R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B3R:G 0 1 B4R:A 0 2 B5R:U 0 3 B6R:G 0 4 B50R:C 0 5 B51R:U 0 6 B52R:U 0 7 B53R:C 0 [Edges] 0 {B3R:G -> B4R:A: adjacent_5p upward } 0 1 {B4R:A -> B3R:G: adjacent_3p downward } 0 2 {B3R:G -> B53R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B53R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B4R:A -> B5R:U: adjacent_5p upward } 0 5 {B5R:U -> B4R:A: adjacent_3p downward } 0 6 {B4R:A -> B52R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B52R:U -> B4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B5R:U -> B6R:G: adjacent_5p } 0 9 {B6R:G -> B5R:U: adjacent_3p } 0 10 {B5R:U -> B51R:U: pairing antiparallel cis XVI Ws/Ww } 0 11 {B51R:U -> B5R:U: pairing antiparallel cis XVI Ww/Ws } 0 12 {B6R:G -> B50R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B50R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B6R:G -> B51R:U: outward } 0 15 {B51R:U -> B6R:G: outward } 0 16 {B50R:C -> B51R:U: adjacent_5p } 0 17 {B51R:U -> B50R:C: adjacent_3p } 0 18 {B51R:U -> B52R:U: adjacent_5p upward } 0 19 {B52R:U -> B51R:U: adjacent_3p downward } 0 20 {B52R:U -> B53R:C: adjacent_5p } 0 21 {B53R:C -> B52R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B16R:G 0 1 B17R:G 0 2 B18R:U 0 3 B19R:G 0 4 B46R:C 0 5 B47R:A 0 6 B48R:C 0 7 B49R:C 0 [Edges] 0 {B16R:G -> B17R:G: adjacent_5p upward } 0 1 {B17R:G -> B16R:G: adjacent_3p downward } 0 2 {B16R:G -> B49R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B49R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B17R:G -> B18R:U: adjacent_5p upward } 0 5 {B18R:U -> B17R:G: adjacent_3p downward } 0 6 {B17R:G -> B48R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B48R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B18R:U -> B19R:G: adjacent_5p } 0 9 {B19R:G -> B18R:U: adjacent_3p } 0 10 {B18R:U -> B47R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B47R:A -> B18R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B19R:G -> B46R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B46R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B19R:G -> B47R:A: outward } 0 15 {B47R:A -> B19R:G: outward } 0 16 {B46R:C -> B47R:A: adjacent_5p upward } 0 17 {B47R:A -> B46R:C: adjacent_3p downward } 0 18 {B47R:A -> B48R:C: adjacent_5p upward } 0 19 {B48R:C -> B47R:A: adjacent_3p downward } 0 20 {B48R:C -> B49R:C: adjacent_5p upward } 0 21 {B49R:C -> B48R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B17R:G 0 1 B18R:U 0 2 B19R:G 0 3 B20R:G 0 4 B45R:C 0 5 B46R:C 0 6 B47R:A 0 7 B48R:C 0 [Edges] 0 {B17R:G -> B18R:U: adjacent_5p upward } 0 1 {B18R:U -> B17R:G: adjacent_3p downward } 0 2 {B17R:G -> B48R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B48R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B18R:U -> B19R:G: adjacent_5p } 0 5 {B19R:G -> B18R:U: adjacent_3p } 0 6 {B18R:U -> B47R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B47R:A -> B18R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B19R:G -> B20R:G: adjacent_5p upward } 0 9 {B20R:G -> B19R:G: adjacent_3p downward } 0 10 {B19R:G -> B46R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B46R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B19R:G -> B47R:A: outward } 0 13 {B47R:A -> B19R:G: outward } 0 14 {B20R:G -> B45R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B45R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B45R:C -> B46R:C: adjacent_5p upward } 0 17 {B46R:C -> B45R:C: adjacent_3p downward } 0 18 {B46R:C -> B47R:A: adjacent_5p upward } 0 19 {B47R:A -> B46R:C: adjacent_3p downward } 0 20 {B47R:A -> B48R:C: adjacent_5p upward } 0 21 {B48R:C -> B47R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B18R:U 0 1 B19R:G 0 2 B20R:G 0 3 B21R:G 0 4 B44R:A 0 5 B45R:C 0 6 B46R:C 0 7 B47R:A 0 [Edges] 0 {B18R:U -> B19R:G: adjacent_5p } 0 1 {B19R:G -> B18R:U: adjacent_3p } 0 2 {B18R:U -> B47R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B47R:A -> B18R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B19R:G -> B20R:G: adjacent_5p upward } 0 5 {B20R:G -> B19R:G: adjacent_3p downward } 0 6 {B19R:G -> B46R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B46R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B19R:G -> B47R:A: outward } 0 9 {B47R:A -> B19R:G: outward } 0 10 {B20R:G -> B21R:G: adjacent_5p upward } 0 11 {B21R:G -> B20R:G: adjacent_3p downward } 0 12 {B20R:G -> B45R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B45R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B21R:G -> B44R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {B44R:A -> B21R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {B44R:A -> B45R:C: adjacent_5p upward } 0 17 {B45R:C -> B44R:A: adjacent_3p downward } 0 18 {B45R:C -> B46R:C: adjacent_5p upward } 0 19 {B46R:C -> B45R:C: adjacent_3p downward } 0 20 {B46R:C -> B47R:A: adjacent_5p upward } 0 21 {B47R:A -> B46R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B23R:G 0 1 B24R:C 0 2 B25R:C 0 3 B26R:G 0 4 B29R:A 0 5 B30R:G 0 6 B31R:G 0 7 B32R:C 0 [Edges] 0 {B23R:G -> B24R:C: adjacent_5p upward } 0 1 {B24R:C -> B23R:G: adjacent_3p downward } 0 2 {B23R:G -> B32R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B32R:C -> B23R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B24R:C -> B25R:C: adjacent_5p } 0 5 {B25R:C -> B24R:C: adjacent_3p } 0 6 {B24R:C -> B31R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B31R:G -> B24R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B25R:C -> B26R:G: adjacent_5p upward } 0 9 {B26R:G -> B25R:C: adjacent_3p downward } 0 10 {B25R:C -> B30R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B30R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B26R:G -> B29R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {B29R:A -> B26R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {B29R:A -> B30R:G: adjacent_5p upward } 0 15 {B30R:G -> B29R:A: adjacent_3p downward } 0 16 {B30R:G -> B31R:G: adjacent_5p upward } 0 17 {B31R:G -> B30R:G: adjacent_3p downward } 0 18 {B31R:G -> B32R:C: adjacent_5p upward } 0 19 {B32R:C -> B31R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B1272R:G 0 1 B1273R:G 0 2 B1274R:G 0 3 B1275R:G 0 4 C1287R:C 0 5 C1288R:C 0 6 C1289R:C 0 7 C1290R:C 0 [Edges] 0 {B1272R:G -> B1273R:G: adjacent_5p upward } 0 1 {B1273R:G -> B1272R:G: adjacent_3p downward } 0 2 {B1272R:G -> C1290R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C1290R:C -> B1272R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B1273R:G -> B1274R:G: adjacent_5p upward } 0 5 {B1274R:G -> B1273R:G: adjacent_3p downward } 0 6 {B1273R:G -> C1289R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {C1289R:C -> B1273R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {B1274R:G -> B1275R:G: adjacent_5p upward } 0 9 {B1275R:G -> B1274R:G: adjacent_3p downward } 0 10 {B1274R:G -> C1288R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C1288R:C -> B1274R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B1275R:G -> C1287R:C: pairing antiparallel cis Ww/Ww } 0 13 {C1287R:C -> B1275R:G: pairing antiparallel cis Ww/Ww } 0 14 {C1287R:C -> C1288R:C: adjacent_5p } 0 15 {C1288R:C -> C1287R:C: adjacent_3p } 0 16 {C1288R:C -> C1289R:C: adjacent_5p } 0 17 {C1289R:C -> C1288R:C: adjacent_3p } 0 18 {C1289R:C -> C1290R:C: adjacent_5p } 0 19 {C1290R:C -> C1289R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:A 0 1 A3R:G 0 2 A4R:G 0 3 A5R:G 0 4 B21R:C 0 5 B22R:C 0 6 B23R:C 0 7 B24R:U 0 [Edges] 0 {A2R:A -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:A: adjacent_3p downward } 0 2 {A2R:A -> B24R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B24R:U -> A2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B23R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B22R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> B21R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 13 {B21R:C -> A5R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 14 {B21R:C -> B22R:C: adjacent_5p } 0 15 {B22R:C -> B21R:C: adjacent_3p } 0 16 {B22R:C -> B23R:C: adjacent_5p } 0 17 {B23R:C -> B22R:C: adjacent_3p } 0 18 {B23R:C -> B24R:U: adjacent_5p } 0 19 {B24R:U -> B23R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:C 0 3 A5R:C 0 4 A18R:U 0 5 A19R:G 0 6 A20R:U 0 7 A21R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A20R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:C -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A19R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:C -> A18R:U: pairing antiparallel cis one_hbond 106 Ws/Ww } 0 13 {A18R:U -> A5R:C: pairing antiparallel cis one_hbond 106 Ww/Ws } 0 14 {A18R:U -> A19R:G: adjacent_5p } 0 15 {A19R:G -> A18R:U: adjacent_3p } 0 16 {A19R:G -> A20R:U: adjacent_5p upward } 0 17 {A20R:U -> A19R:G: adjacent_3p downward } 0 18 {A20R:U -> A21R:C: adjacent_5p upward } 0 19 {A21R:C -> A20R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:C 0 2 A5R:C 0 3 A6R:U 0 4 A17R:U 0 5 A18R:U 0 6 A19R:G 0 7 A20R:U 0 [Edges] 0 {A3R:A -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A20R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:C -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:C -> A6R:U: adjacent_5p } 0 9 {A6R:U -> A5R:C: adjacent_3p } 0 10 {A5R:C -> A18R:U: pairing antiparallel cis one_hbond 106 Ws/Ww } 0 11 {A18R:U -> A5R:C: pairing antiparallel cis one_hbond 106 Ww/Ws } 0 12 {A6R:U -> A17R:U: pairing antiparallel cis XVI Ww/Ws } 0 13 {A17R:U -> A6R:U: pairing antiparallel cis XVI Ws/Ww } 0 14 {A6R:U -> A18R:U: outward } 0 15 {A18R:U -> A6R:U: outward } 0 16 {A17R:U -> A18R:U: adjacent_5p } 0 17 {A18R:U -> A17R:U: adjacent_3p } 0 18 {A18R:U -> A19R:G: adjacent_5p } 0 19 {A19R:G -> A18R:U: adjacent_3p } 0 20 {A19R:G -> A20R:U: adjacent_5p upward } 0 21 {A20R:U -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:C 0 2 A6R:U 0 3 A7R:C 0 4 A16R:G 0 5 A17R:U 0 6 A18R:U 0 7 A19R:G 0 [Edges] 0 {A4R:C -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:U: adjacent_5p } 0 5 {A6R:U -> A5R:C: adjacent_3p } 0 6 {A5R:C -> A18R:U: pairing antiparallel cis one_hbond 106 Ws/Ww } 0 7 {A18R:U -> A5R:C: pairing antiparallel cis one_hbond 106 Ww/Ws } 0 8 {A6R:U -> A7R:C: adjacent_5p upward } 0 9 {A7R:C -> A6R:U: adjacent_3p downward } 0 10 {A6R:U -> A17R:U: pairing antiparallel cis XVI Ww/Ws } 0 11 {A17R:U -> A6R:U: pairing antiparallel cis XVI Ws/Ww } 0 12 {A6R:U -> A18R:U: outward } 0 13 {A18R:U -> A6R:U: outward } 0 14 {A7R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A16R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A16R:G -> A17R:U: adjacent_5p upward } 0 17 {A17R:U -> A16R:G: adjacent_3p downward } 0 18 {A17R:U -> A18R:U: adjacent_5p } 0 19 {A18R:U -> A17R:U: adjacent_3p } 0 20 {A18R:U -> A19R:G: adjacent_5p } 0 21 {A19R:G -> A18R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:U 0 2 A7R:C 0 3 A8R:U 0 4 A15R:A 0 5 A16R:G 0 6 A17R:U 0 7 A18R:U 0 [Edges] 0 {A5R:C -> A6R:U: adjacent_5p } 0 1 {A6R:U -> A5R:C: adjacent_3p } 0 2 {A5R:C -> A18R:U: pairing antiparallel cis one_hbond 106 Ws/Ww } 0 3 {A18R:U -> A5R:C: pairing antiparallel cis one_hbond 106 Ww/Ws } 0 4 {A6R:U -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:U: adjacent_3p downward } 0 6 {A6R:U -> A17R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {A17R:U -> A6R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {A6R:U -> A18R:U: outward } 0 9 {A18R:U -> A6R:U: outward } 0 10 {A7R:C -> A8R:U: adjacent_5p } 0 11 {A8R:U -> A7R:C: adjacent_3p } 0 12 {A7R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A16R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A8R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A15R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A15R:A -> A16R:G: adjacent_5p upward } 0 17 {A16R:G -> A15R:A: adjacent_3p downward } 0 18 {A16R:G -> A17R:U: adjacent_5p upward } 0 19 {A17R:U -> A16R:G: adjacent_3p downward } 0 20 {A17R:U -> A18R:U: adjacent_5p } 0 21 {A18R:U -> A17R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A6R:U 0 1 A7R:C 0 2 A8R:U 0 3 A9R:C 0 4 A14R:G 0 5 A15R:A 0 6 A16R:G 0 7 A17R:U 0 [Edges] 0 {A6R:U -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:U: adjacent_3p downward } 0 2 {A6R:U -> A17R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {A17R:U -> A6R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {A7R:C -> A8R:U: adjacent_5p } 0 5 {A8R:U -> A7R:C: adjacent_3p } 0 6 {A7R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A16R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:U -> A9R:C: adjacent_5p upward } 0 9 {A9R:C -> A8R:U: adjacent_3p downward } 0 10 {A8R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A15R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:C -> A14R:G: pairing antiparallel cis Ww/Ww } 0 13 {A14R:G -> A9R:C: pairing antiparallel cis Ww/Ww } 0 14 {A14R:G -> A15R:A: adjacent_5p upward } 0 15 {A15R:A -> A14R:G: adjacent_3p downward } 0 16 {A15R:A -> A16R:G: adjacent_5p upward } 0 17 {A16R:G -> A15R:A: adjacent_3p downward } 0 18 {A16R:G -> A17R:U: adjacent_5p upward } 0 19 {A17R:U -> A16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:U 0 2 A9R:C 0 3 A10R:G 0 4 A13R:A 0 5 A14R:G 0 6 A15R:A 0 7 A16R:G 0 [Edges] 0 {A7R:C -> A8R:U: adjacent_5p } 0 1 {A8R:U -> A7R:C: adjacent_3p } 0 2 {A7R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A16R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:U -> A9R:C: adjacent_5p upward } 0 5 {A9R:C -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A15R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:C -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:C: adjacent_3p downward } 0 10 {A9R:C -> A14R:G: pairing antiparallel cis Ww/Ww } 0 11 {A14R:G -> A9R:C: pairing antiparallel cis Ww/Ww } 0 12 {A10R:G -> A13R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A13R:A -> A10R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A10R:G -> A14R:G: outward } 0 15 {A14R:G -> A10R:G: outward } 0 16 {A13R:A -> A14R:G: adjacent_5p upward } 0 17 {A14R:G -> A13R:A: adjacent_3p downward } 0 18 {A14R:G -> A15R:A: adjacent_5p upward } 0 19 {A15R:A -> A14R:G: adjacent_3p downward } 0 20 {A15R:A -> A16R:G: adjacent_5p upward } 0 21 {A16R:G -> A15R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C501R:G 0 1 C502R:G 0 2 C503R:C 0 3 C504R:C 0 4 C569R:G 0 5 C570R:G 0 6 C571R:U 0 7 C572R:C 0 [Edges] 0 {C501R:G -> C502R:G: adjacent_5p upward } 0 1 {C502R:G -> C501R:G: adjacent_3p downward } 0 2 {C501R:G -> C572R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C572R:C -> C501R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C502R:G -> C503R:C: adjacent_5p upward } 0 5 {C503R:C -> C502R:G: adjacent_3p downward } 0 6 {C502R:G -> C571R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {C571R:U -> C502R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {C503R:C -> C504R:C: adjacent_5p upward } 0 9 {C504R:C -> C503R:C: adjacent_3p downward } 0 10 {C503R:C -> C570R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C570R:G -> C503R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C504R:C -> C569R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C569R:G -> C504R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C569R:G -> C570R:G: adjacent_5p upward } 0 15 {C570R:G -> C569R:G: adjacent_3p downward } 0 16 {C570R:G -> C571R:U: adjacent_5p upward } 0 17 {C571R:U -> C570R:G: adjacent_3p downward } 0 18 {C571R:U -> C572R:C: adjacent_5p upward } 0 19 {C572R:C -> C571R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C502R:G 0 1 C503R:C 0 2 C504R:C 0 3 C505R:C 0 4 C568R:G 0 5 C569R:G 0 6 C570R:G 0 7 C571R:U 0 [Edges] 0 {C502R:G -> C503R:C: adjacent_5p upward } 0 1 {C503R:C -> C502R:G: adjacent_3p downward } 0 2 {C502R:G -> C571R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {C571R:U -> C502R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {C503R:C -> C504R:C: adjacent_5p upward } 0 5 {C504R:C -> C503R:C: adjacent_3p downward } 0 6 {C503R:C -> C570R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C570R:G -> C503R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C504R:C -> C505R:C: adjacent_5p upward } 0 9 {C505R:C -> C504R:C: adjacent_3p downward } 0 10 {C504R:C -> C569R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C569R:G -> C504R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C505R:C -> C568R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C568R:G -> C505R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C568R:G -> C569R:G: adjacent_5p upward } 0 15 {C569R:G -> C568R:G: adjacent_3p downward } 0 16 {C569R:G -> C570R:G: adjacent_5p upward } 0 17 {C570R:G -> C569R:G: adjacent_3p downward } 0 18 {C570R:G -> C571R:U: adjacent_5p upward } 0 19 {C571R:U -> C570R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C503R:C 0 1 C504R:C 0 2 C505R:C 0 3 C506R:C 0 4 C567R:G 0 5 C568R:G 0 6 C569R:G 0 7 C570R:G 0 [Edges] 0 {C503R:C -> C504R:C: adjacent_5p upward } 0 1 {C504R:C -> C503R:C: adjacent_3p downward } 0 2 {C503R:C -> C570R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C570R:G -> C503R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C504R:C -> C505R:C: adjacent_5p upward } 0 5 {C505R:C -> C504R:C: adjacent_3p downward } 0 6 {C504R:C -> C569R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C569R:G -> C504R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C505R:C -> C506R:C: adjacent_5p upward } 0 9 {C506R:C -> C505R:C: adjacent_3p downward } 0 10 {C505R:C -> C568R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C568R:G -> C505R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C506R:C -> C567R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C567R:G -> C506R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C567R:G -> C568R:G: adjacent_5p upward } 0 15 {C568R:G -> C567R:G: adjacent_3p downward } 0 16 {C568R:G -> C569R:G: adjacent_5p upward } 0 17 {C569R:G -> C568R:G: adjacent_3p downward } 0 18 {C569R:G -> C570R:G: adjacent_5p upward } 0 19 {C570R:G -> C569R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C504R:C 0 1 C505R:C 0 2 C506R:C 0 3 C507R:A 0 4 C566R:U 0 5 C567R:G 0 6 C568R:G 0 7 C569R:G 0 [Edges] 0 {C504R:C -> C505R:C: adjacent_5p upward } 0 1 {C505R:C -> C504R:C: adjacent_3p downward } 0 2 {C504R:C -> C569R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C569R:G -> C504R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C505R:C -> C506R:C: adjacent_5p upward } 0 5 {C506R:C -> C505R:C: adjacent_3p downward } 0 6 {C505R:C -> C568R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C568R:G -> C505R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C506R:C -> C507R:A: adjacent_5p upward } 0 9 {C507R:A -> C506R:C: adjacent_3p downward } 0 10 {C506R:C -> C567R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C567R:G -> C506R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C507R:A -> C566R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {C566R:U -> C507R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {C507R:A -> C567R:G: outward } 0 15 {C567R:G -> C507R:A: outward } 0 16 {C566R:U -> C567R:G: adjacent_5p upward } 0 17 {C567R:G -> C566R:U: adjacent_3p downward } 0 18 {C567R:G -> C568R:G: adjacent_5p upward } 0 19 {C568R:G -> C567R:G: adjacent_3p downward } 0 20 {C568R:G -> C569R:G: adjacent_5p upward } 0 21 {C569R:G -> C568R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C510R:G 0 1 C511R:U 0 2 C512R:C 0 3 C513R:U 0 4 C522R:G 0 5 C523R:G 0 6 C524R:A 0 7 C525R:C 0 [Edges] 0 {C510R:G -> C511R:U: adjacent_5p upward } 0 1 {C511R:U -> C510R:G: adjacent_3p downward } 0 2 {C510R:G -> C525R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C525R:C -> C510R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C511R:U -> C512R:C: adjacent_5p } 0 5 {C512R:C -> C511R:U: adjacent_3p } 0 6 {C511R:U -> C524R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C524R:A -> C511R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C512R:C -> C513R:U: adjacent_5p upward } 0 9 {C513R:U -> C512R:C: adjacent_3p downward } 0 10 {C512R:C -> C523R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C523R:G -> C512R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C513R:U -> C522R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {C522R:G -> C513R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {C522R:G -> C523R:G: adjacent_5p upward } 0 15 {C523R:G -> C522R:G: adjacent_3p downward } 0 16 {C523R:G -> C524R:A: adjacent_5p upward } 0 17 {C524R:A -> C523R:G: adjacent_3p downward } 0 18 {C524R:A -> C525R:C: adjacent_5p upward } 0 19 {C525R:C -> C524R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C511R:U 0 1 C512R:C 0 2 C513R:U 0 3 C514R:A 0 4 C521R:A 0 5 C522R:G 0 6 C523R:G 0 7 C524R:A 0 [Edges] 0 {C511R:U -> C512R:C: adjacent_5p } 0 1 {C512R:C -> C511R:U: adjacent_3p } 0 2 {C511R:U -> C524R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C524R:A -> C511R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C512R:C -> C513R:U: adjacent_5p upward } 0 5 {C513R:U -> C512R:C: adjacent_3p downward } 0 6 {C512R:C -> C523R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C523R:G -> C512R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C513R:U -> C514R:A: adjacent_5p } 0 9 {C514R:A -> C513R:U: adjacent_3p } 0 10 {C513R:U -> C522R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {C522R:G -> C513R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {C514R:A -> C521R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 13 {C521R:A -> C514R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 14 {C514R:A -> C522R:G: outward } 0 15 {C522R:G -> C514R:A: outward } 0 16 {C521R:A -> C522R:G: adjacent_5p } 0 17 {C522R:G -> C521R:A: adjacent_3p } 0 18 {C522R:G -> C523R:G: adjacent_5p upward } 0 19 {C523R:G -> C522R:G: adjacent_3p downward } 0 20 {C523R:G -> C524R:A: adjacent_5p upward } 0 21 {C524R:A -> C523R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C526R:G 0 1 C527R:C 0 2 C528R:G 0 3 C529R:G 0 4 C541R:C 0 5 C542R:C 0 6 C543R:G 0 7 C544R:A 0 [Edges] 0 {C526R:G -> C527R:C: adjacent_5p upward } 0 1 {C527R:C -> C526R:G: adjacent_3p downward } 0 2 {C526R:G -> C544R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {C544R:A -> C526R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {C527R:C -> C528R:G: adjacent_5p upward } 0 5 {C528R:G -> C527R:C: adjacent_3p downward } 0 6 {C527R:C -> C543R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C543R:G -> C527R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C528R:G -> C529R:G: adjacent_5p upward } 0 9 {C529R:G -> C528R:G: adjacent_3p downward } 0 10 {C528R:G -> C542R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C542R:C -> C528R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C528R:G -> C543R:G: outward } 0 13 {C543R:G -> C528R:G: outward } 0 14 {C529R:G -> C541R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C541R:C -> C529R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C541R:C -> C542R:C: adjacent_5p upward } 0 17 {C542R:C -> C541R:C: adjacent_3p downward } 0 18 {C542R:C -> C543R:G: adjacent_5p upward } 0 19 {C543R:G -> C542R:C: adjacent_3p downward } 0 20 {C543R:G -> C544R:A: adjacent_5p upward } 0 21 {C544R:A -> C543R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C527R:C 0 1 C528R:G 0 2 C529R:G 0 3 C530R:C 0 4 C540R:G 0 5 C541R:C 0 6 C542R:C 0 7 C543R:G 0 [Edges] 0 {C527R:C -> C528R:G: adjacent_5p upward } 0 1 {C528R:G -> C527R:C: adjacent_3p downward } 0 2 {C527R:C -> C543R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C543R:G -> C527R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C528R:G -> C529R:G: adjacent_5p upward } 0 5 {C529R:G -> C528R:G: adjacent_3p downward } 0 6 {C528R:G -> C542R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C542R:C -> C528R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C528R:G -> C543R:G: outward } 0 9 {C543R:G -> C528R:G: outward } 0 10 {C529R:G -> C530R:C: adjacent_5p upward } 0 11 {C530R:C -> C529R:G: adjacent_3p downward } 0 12 {C529R:G -> C541R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C541R:C -> C529R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C530R:C -> C540R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {C540R:G -> C530R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {C540R:G -> C541R:C: adjacent_5p upward } 0 17 {C541R:C -> C540R:G: adjacent_3p downward } 0 18 {C541R:C -> C542R:C: adjacent_5p upward } 0 19 {C542R:C -> C541R:C: adjacent_3p downward } 0 20 {C542R:C -> C543R:G: adjacent_5p upward } 0 21 {C543R:G -> C542R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C528R:G 0 1 C529R:G 0 2 C530R:C 0 3 C531R:C 0 4 C539R:G 0 5 C540R:G 0 6 C541R:C 0 7 C542R:C 0 [Edges] 0 {C528R:G -> C529R:G: adjacent_5p upward } 0 1 {C529R:G -> C528R:G: adjacent_3p downward } 0 2 {C528R:G -> C542R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C542R:C -> C528R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C529R:G -> C530R:C: adjacent_5p upward } 0 5 {C530R:C -> C529R:G: adjacent_3p downward } 0 6 {C529R:G -> C541R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C541R:C -> C529R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C530R:C -> C531R:C: adjacent_5p } 0 9 {C531R:C -> C530R:C: adjacent_3p } 0 10 {C530R:C -> C540R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C540R:G -> C530R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C531R:C -> C539R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C539R:G -> C531R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C539R:G -> C540R:G: adjacent_5p upward } 0 15 {C540R:G -> C539R:G: adjacent_3p downward } 0 16 {C540R:G -> C541R:C: adjacent_5p upward } 0 17 {C541R:C -> C540R:G: adjacent_3p downward } 0 18 {C541R:C -> C542R:C: adjacent_5p upward } 0 19 {C542R:C -> C541R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C529R:G 0 1 C530R:C 0 2 C531R:C 0 3 C532R:C 0 4 C538R:A 0 5 C539R:G 0 6 C540R:G 0 7 C541R:C 0 [Edges] 0 {C529R:G -> C530R:C: adjacent_5p upward } 0 1 {C530R:C -> C529R:G: adjacent_3p downward } 0 2 {C529R:G -> C541R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C541R:C -> C529R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C530R:C -> C531R:C: adjacent_5p } 0 5 {C531R:C -> C530R:C: adjacent_3p } 0 6 {C530R:C -> C540R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C540R:G -> C530R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C531R:C -> C532R:C: adjacent_5p upward } 0 9 {C532R:C -> C531R:C: adjacent_3p downward } 0 10 {C531R:C -> C539R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C539R:G -> C531R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C532R:C -> C538R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 13 {C538R:A -> C532R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 14 {C538R:A -> C539R:G: adjacent_5p upward } 0 15 {C539R:G -> C538R:A: adjacent_3p downward } 0 16 {C539R:G -> C540R:G: adjacent_5p upward } 0 17 {C540R:G -> C539R:G: adjacent_3p downward } 0 18 {C540R:G -> C541R:C: adjacent_5p upward } 0 19 {C541R:C -> C540R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C549R:G 0 1 C550R:G 0 2 C551R:G 0 3 C552R:G 0 4 C562R:C 0 5 C563R:C 0 6 C564R:C 0 7 C565R:C 0 [Edges] 0 {C549R:G -> C550R:G: adjacent_5p upward } 0 1 {C550R:G -> C549R:G: adjacent_3p downward } 0 2 {C549R:G -> C565R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C565R:C -> C549R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C550R:G -> C551R:G: adjacent_5p upward } 0 5 {C551R:G -> C550R:G: adjacent_3p downward } 0 6 {C550R:G -> C564R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C564R:C -> C550R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C551R:G -> C552R:G: adjacent_5p upward } 0 9 {C552R:G -> C551R:G: adjacent_3p downward } 0 10 {C551R:G -> C563R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C563R:C -> C551R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C552R:G -> C562R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C562R:C -> C552R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C562R:C -> C563R:C: adjacent_5p } 0 15 {C563R:C -> C562R:C: adjacent_3p } 0 16 {C563R:C -> C564R:C: adjacent_5p } 0 17 {C564R:C -> C563R:C: adjacent_3p } 0 18 {C564R:C -> C565R:C: adjacent_5p upward } 0 19 {C565R:C -> C564R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C550R:G 0 1 C551R:G 0 2 C552R:G 0 3 C553R:G 0 4 C561R:C 0 5 C562R:C 0 6 C563R:C 0 7 C564R:C 0 [Edges] 0 {C550R:G -> C551R:G: adjacent_5p upward } 0 1 {C551R:G -> C550R:G: adjacent_3p downward } 0 2 {C550R:G -> C564R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C564R:C -> C550R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C551R:G -> C552R:G: adjacent_5p upward } 0 5 {C552R:G -> C551R:G: adjacent_3p downward } 0 6 {C551R:G -> C563R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C563R:C -> C551R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C552R:G -> C553R:G: adjacent_5p upward } 0 9 {C553R:G -> C552R:G: adjacent_3p downward } 0 10 {C552R:G -> C562R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C562R:C -> C552R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C553R:G -> C561R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C561R:C -> C553R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C561R:C -> C562R:C: adjacent_5p } 0 15 {C562R:C -> C561R:C: adjacent_3p } 0 16 {C562R:C -> C563R:C: adjacent_5p } 0 17 {C563R:C -> C562R:C: adjacent_3p } 0 18 {C563R:C -> C564R:C: adjacent_5p } 0 19 {C564R:C -> C563R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D501R:G 0 1 D502R:G 0 2 D503R:C 0 3 D504R:C 0 4 D569R:G 0 5 D570R:G 0 6 D571R:U 0 7 D572R:C 0 [Edges] 0 {D501R:G -> D502R:G: adjacent_5p upward } 0 1 {D502R:G -> D501R:G: adjacent_3p downward } 0 2 {D501R:G -> D572R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D572R:C -> D501R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D502R:G -> D503R:C: adjacent_5p upward } 0 5 {D503R:C -> D502R:G: adjacent_3p downward } 0 6 {D502R:G -> D571R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {D571R:U -> D502R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {D503R:C -> D504R:C: adjacent_5p upward } 0 9 {D504R:C -> D503R:C: adjacent_3p downward } 0 10 {D503R:C -> D570R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D570R:G -> D503R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D504R:C -> D569R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D569R:G -> D504R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D569R:G -> D570R:G: adjacent_5p upward } 0 15 {D570R:G -> D569R:G: adjacent_3p downward } 0 16 {D570R:G -> D571R:U: adjacent_5p upward } 0 17 {D571R:U -> D570R:G: adjacent_3p downward } 0 18 {D571R:U -> D572R:C: adjacent_5p upward } 0 19 {D572R:C -> D571R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D502R:G 0 1 D503R:C 0 2 D504R:C 0 3 D505R:C 0 4 D568R:G 0 5 D569R:G 0 6 D570R:G 0 7 D571R:U 0 [Edges] 0 {D502R:G -> D503R:C: adjacent_5p upward } 0 1 {D503R:C -> D502R:G: adjacent_3p downward } 0 2 {D502R:G -> D571R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {D571R:U -> D502R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {D503R:C -> D504R:C: adjacent_5p upward } 0 5 {D504R:C -> D503R:C: adjacent_3p downward } 0 6 {D503R:C -> D570R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D570R:G -> D503R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D504R:C -> D505R:C: adjacent_5p } 0 9 {D505R:C -> D504R:C: adjacent_3p } 0 10 {D504R:C -> D569R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D569R:G -> D504R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D505R:C -> D568R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D568R:G -> D505R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D568R:G -> D569R:G: adjacent_5p upward } 0 15 {D569R:G -> D568R:G: adjacent_3p downward } 0 16 {D569R:G -> D570R:G: adjacent_5p upward } 0 17 {D570R:G -> D569R:G: adjacent_3p downward } 0 18 {D570R:G -> D571R:U: adjacent_5p upward } 0 19 {D571R:U -> D570R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D503R:C 0 1 D504R:C 0 2 D505R:C 0 3 D506R:C 0 4 D567R:G 0 5 D568R:G 0 6 D569R:G 0 7 D570R:G 0 [Edges] 0 {D503R:C -> D504R:C: adjacent_5p upward } 0 1 {D504R:C -> D503R:C: adjacent_3p downward } 0 2 {D503R:C -> D570R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D570R:G -> D503R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D504R:C -> D505R:C: adjacent_5p } 0 5 {D505R:C -> D504R:C: adjacent_3p } 0 6 {D504R:C -> D569R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D569R:G -> D504R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D505R:C -> D506R:C: adjacent_5p upward } 0 9 {D506R:C -> D505R:C: adjacent_3p downward } 0 10 {D505R:C -> D568R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D568R:G -> D505R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D506R:C -> D567R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D567R:G -> D506R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D567R:G -> D568R:G: adjacent_5p upward } 0 15 {D568R:G -> D567R:G: adjacent_3p downward } 0 16 {D568R:G -> D569R:G: adjacent_5p upward } 0 17 {D569R:G -> D568R:G: adjacent_3p downward } 0 18 {D569R:G -> D570R:G: adjacent_5p upward } 0 19 {D570R:G -> D569R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D504R:C 0 1 D505R:C 0 2 D506R:C 0 3 D507R:A 0 4 D566R:U 0 5 D567R:G 0 6 D568R:G 0 7 D569R:G 0 [Edges] 0 {D504R:C -> D505R:C: adjacent_5p } 0 1 {D505R:C -> D504R:C: adjacent_3p } 0 2 {D504R:C -> D569R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D569R:G -> D504R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D505R:C -> D506R:C: adjacent_5p upward } 0 5 {D506R:C -> D505R:C: adjacent_3p downward } 0 6 {D505R:C -> D568R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D568R:G -> D505R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D506R:C -> D507R:A: adjacent_5p upward } 0 9 {D507R:A -> D506R:C: adjacent_3p downward } 0 10 {D506R:C -> D567R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D567R:G -> D506R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D507R:A -> D566R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {D566R:U -> D507R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {D507R:A -> D567R:G: outward } 0 15 {D567R:G -> D507R:A: outward } 0 16 {D566R:U -> D567R:G: adjacent_5p upward } 0 17 {D567R:G -> D566R:U: adjacent_3p downward } 0 18 {D567R:G -> D568R:G: adjacent_5p upward } 0 19 {D568R:G -> D567R:G: adjacent_3p downward } 0 20 {D568R:G -> D569R:G: adjacent_5p upward } 0 21 {D569R:G -> D568R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D510R:G 0 1 D511R:U 0 2 D512R:C 0 3 D513R:U 0 4 D522R:G 0 5 D523R:G 0 6 D524R:A 0 7 D525R:C 0 [Edges] 0 {D510R:G -> D511R:U: adjacent_5p upward } 0 1 {D511R:U -> D510R:G: adjacent_3p downward } 0 2 {D510R:G -> D525R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D525R:C -> D510R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D511R:U -> D512R:C: adjacent_5p } 0 5 {D512R:C -> D511R:U: adjacent_3p } 0 6 {D511R:U -> D524R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D524R:A -> D511R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D512R:C -> D513R:U: adjacent_5p upward } 0 9 {D513R:U -> D512R:C: adjacent_3p downward } 0 10 {D512R:C -> D523R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D523R:G -> D512R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D513R:U -> D522R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {D522R:G -> D513R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {D522R:G -> D523R:G: adjacent_5p upward } 0 15 {D523R:G -> D522R:G: adjacent_3p downward } 0 16 {D523R:G -> D524R:A: adjacent_5p upward } 0 17 {D524R:A -> D523R:G: adjacent_3p downward } 0 18 {D524R:A -> D525R:C: adjacent_5p upward } 0 19 {D525R:C -> D524R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D511R:U 0 1 D512R:C 0 2 D513R:U 0 3 D514R:A 0 4 D521R:A 0 5 D522R:G 0 6 D523R:G 0 7 D524R:A 0 [Edges] 0 {D511R:U -> D512R:C: adjacent_5p } 0 1 {D512R:C -> D511R:U: adjacent_3p } 0 2 {D511R:U -> D524R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D524R:A -> D511R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D512R:C -> D513R:U: adjacent_5p upward } 0 5 {D513R:U -> D512R:C: adjacent_3p downward } 0 6 {D512R:C -> D523R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D523R:G -> D512R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D513R:U -> D514R:A: adjacent_5p } 0 9 {D514R:A -> D513R:U: adjacent_3p } 0 10 {D513R:U -> D522R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {D522R:G -> D513R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {D514R:A -> D521R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 13 {D521R:A -> D514R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 14 {D514R:A -> D522R:G: outward } 0 15 {D522R:G -> D514R:A: outward } 0 16 {D521R:A -> D522R:G: adjacent_5p } 0 17 {D522R:G -> D521R:A: adjacent_3p } 0 18 {D522R:G -> D523R:G: adjacent_5p upward } 0 19 {D523R:G -> D522R:G: adjacent_3p downward } 0 20 {D523R:G -> D524R:A: adjacent_5p upward } 0 21 {D524R:A -> D523R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D526R:G 0 1 D527R:C 0 2 D528R:G 0 3 D529R:G 0 4 D541R:C 0 5 D542R:C 0 6 D543R:G 0 7 D544R:A 0 [Edges] 0 {D526R:G -> D527R:C: adjacent_5p upward } 0 1 {D527R:C -> D526R:G: adjacent_3p downward } 0 2 {D526R:G -> D544R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {D544R:A -> D526R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {D527R:C -> D528R:G: adjacent_5p upward } 0 5 {D528R:G -> D527R:C: adjacent_3p downward } 0 6 {D527R:C -> D543R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D543R:G -> D527R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D528R:G -> D529R:G: adjacent_5p upward } 0 9 {D529R:G -> D528R:G: adjacent_3p downward } 0 10 {D528R:G -> D542R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D542R:C -> D528R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D528R:G -> D543R:G: outward } 0 13 {D543R:G -> D528R:G: outward } 0 14 {D529R:G -> D541R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D541R:C -> D529R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D541R:C -> D542R:C: adjacent_5p upward } 0 17 {D542R:C -> D541R:C: adjacent_3p downward } 0 18 {D542R:C -> D543R:G: adjacent_5p upward } 0 19 {D543R:G -> D542R:C: adjacent_3p downward } 0 20 {D543R:G -> D544R:A: adjacent_5p upward } 0 21 {D544R:A -> D543R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D527R:C 0 1 D528R:G 0 2 D529R:G 0 3 D530R:C 0 4 D540R:G 0 5 D541R:C 0 6 D542R:C 0 7 D543R:G 0 [Edges] 0 {D527R:C -> D528R:G: adjacent_5p upward } 0 1 {D528R:G -> D527R:C: adjacent_3p downward } 0 2 {D527R:C -> D543R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D543R:G -> D527R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D528R:G -> D529R:G: adjacent_5p upward } 0 5 {D529R:G -> D528R:G: adjacent_3p downward } 0 6 {D528R:G -> D542R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D542R:C -> D528R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D528R:G -> D543R:G: outward } 0 9 {D543R:G -> D528R:G: outward } 0 10 {D529R:G -> D530R:C: adjacent_5p upward } 0 11 {D530R:C -> D529R:G: adjacent_3p downward } 0 12 {D529R:G -> D541R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D541R:C -> D529R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D530R:C -> D540R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D540R:G -> D530R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D540R:G -> D541R:C: adjacent_5p upward } 0 17 {D541R:C -> D540R:G: adjacent_3p downward } 0 18 {D541R:C -> D542R:C: adjacent_5p upward } 0 19 {D542R:C -> D541R:C: adjacent_3p downward } 0 20 {D542R:C -> D543R:G: adjacent_5p upward } 0 21 {D543R:G -> D542R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D528R:G 0 1 D529R:G 0 2 D530R:C 0 3 D531R:C 0 4 D539R:G 0 5 D540R:G 0 6 D541R:C 0 7 D542R:C 0 [Edges] 0 {D528R:G -> D529R:G: adjacent_5p upward } 0 1 {D529R:G -> D528R:G: adjacent_3p downward } 0 2 {D528R:G -> D542R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D542R:C -> D528R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D529R:G -> D530R:C: adjacent_5p upward } 0 5 {D530R:C -> D529R:G: adjacent_3p downward } 0 6 {D529R:G -> D541R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D541R:C -> D529R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D530R:C -> D531R:C: adjacent_5p } 0 9 {D531R:C -> D530R:C: adjacent_3p } 0 10 {D530R:C -> D540R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D540R:G -> D530R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D531R:C -> D539R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D539R:G -> D531R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D539R:G -> D540R:G: adjacent_5p upward } 0 15 {D540R:G -> D539R:G: adjacent_3p downward } 0 16 {D540R:G -> D541R:C: adjacent_5p upward } 0 17 {D541R:C -> D540R:G: adjacent_3p downward } 0 18 {D541R:C -> D542R:C: adjacent_5p upward } 0 19 {D542R:C -> D541R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D529R:G 0 1 D530R:C 0 2 D531R:C 0 3 D532R:C 0 4 D538R:A 0 5 D539R:G 0 6 D540R:G 0 7 D541R:C 0 [Edges] 0 {D529R:G -> D530R:C: adjacent_5p upward } 0 1 {D530R:C -> D529R:G: adjacent_3p downward } 0 2 {D529R:G -> D541R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D541R:C -> D529R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D530R:C -> D531R:C: adjacent_5p } 0 5 {D531R:C -> D530R:C: adjacent_3p } 0 6 {D530R:C -> D540R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D540R:G -> D530R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D531R:C -> D532R:C: adjacent_5p upward } 0 9 {D532R:C -> D531R:C: adjacent_3p downward } 0 10 {D531R:C -> D539R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D539R:G -> D531R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D532R:C -> D538R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 13 {D538R:A -> D532R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 14 {D538R:A -> D539R:G: adjacent_5p upward } 0 15 {D539R:G -> D538R:A: adjacent_3p downward } 0 16 {D539R:G -> D540R:G: adjacent_5p upward } 0 17 {D540R:G -> D539R:G: adjacent_3p downward } 0 18 {D540R:G -> D541R:C: adjacent_5p upward } 0 19 {D541R:C -> D540R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D549R:G 0 1 D550R:G 0 2 D551R:G 0 3 D552R:G 0 4 D562R:C 0 5 D563R:C 0 6 D564R:C 0 7 D565R:C 0 [Edges] 0 {D549R:G -> D550R:G: adjacent_5p upward } 0 1 {D550R:G -> D549R:G: adjacent_3p downward } 0 2 {D549R:G -> D565R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D565R:C -> D549R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D550R:G -> D551R:G: adjacent_5p upward } 0 5 {D551R:G -> D550R:G: adjacent_3p downward } 0 6 {D550R:G -> D564R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D564R:C -> D550R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D551R:G -> D552R:G: adjacent_5p upward } 0 9 {D552R:G -> D551R:G: adjacent_3p downward } 0 10 {D551R:G -> D563R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D563R:C -> D551R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D552R:G -> D562R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D562R:C -> D552R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D562R:C -> D563R:C: adjacent_5p } 0 15 {D563R:C -> D562R:C: adjacent_3p } 0 16 {D563R:C -> D564R:C: adjacent_5p } 0 17 {D564R:C -> D563R:C: adjacent_3p } 0 18 {D564R:C -> D565R:C: adjacent_5p upward } 0 19 {D565R:C -> D564R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D550R:G 0 1 D551R:G 0 2 D552R:G 0 3 D553R:G 0 4 D561R:C 0 5 D562R:C 0 6 D563R:C 0 7 D564R:C 0 [Edges] 0 {D550R:G -> D551R:G: adjacent_5p upward } 0 1 {D551R:G -> D550R:G: adjacent_3p downward } 0 2 {D550R:G -> D564R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D564R:C -> D550R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D551R:G -> D552R:G: adjacent_5p upward } 0 5 {D552R:G -> D551R:G: adjacent_3p downward } 0 6 {D551R:G -> D563R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D563R:C -> D551R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D552R:G -> D553R:G: adjacent_5p upward } 0 9 {D553R:G -> D552R:G: adjacent_3p downward } 0 10 {D552R:G -> D562R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D562R:C -> D552R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D553R:G -> D561R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D561R:C -> D553R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D561R:C -> D562R:C: adjacent_5p } 0 15 {D562R:C -> D561R:C: adjacent_3p } 0 16 {D562R:C -> D563R:C: adjacent_5p } 0 17 {D563R:C -> D562R:C: adjacent_3p } 0 18 {D563R:C -> D564R:C: adjacent_5p } 0 19 {D564R:C -> D563R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:G 0 2 A3R:A 0 3 A4R:C 0 4 A33R:G 0 5 A34R:U 0 6 A35R:C 0 7 A36R:C 0 [Edges] 0 {A1R:G -> A2R:G: adjacent_5p upward } 0 1 {A2R:G -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A36R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A36R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:G -> A3R:A: adjacent_5p upward } 0 5 {A3R:A -> A2R:G: adjacent_3p downward } 0 6 {A2R:G -> A35R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A35R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:A -> A4R:C: adjacent_5p upward } 0 9 {A4R:C -> A3R:A: adjacent_3p downward } 0 10 {A3R:A -> A34R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A34R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A4R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A33R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A33R:G -> A34R:U: adjacent_5p upward } 0 15 {A34R:U -> A33R:G: adjacent_3p downward } 0 16 {A34R:U -> A35R:C: adjacent_5p upward } 0 17 {A35R:C -> A34R:U: adjacent_3p downward } 0 18 {A35R:C -> A36R:C: adjacent_5p upward } 0 19 {A36R:C -> A35R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:C 0 3 A5R:U 0 4 A32R:A 0 5 A33R:G 0 6 A34R:U 0 7 A35R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A35R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A35R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A34R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A34R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:C -> A5R:U: adjacent_5p } 0 9 {A5R:U -> A4R:C: adjacent_3p } 0 10 {A4R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A33R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A32R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A32R:A -> A33R:G: adjacent_5p upward } 0 15 {A33R:G -> A32R:A: adjacent_3p downward } 0 16 {A33R:G -> A34R:U: adjacent_5p upward } 0 17 {A34R:U -> A33R:G: adjacent_3p downward } 0 18 {A34R:U -> A35R:C: adjacent_5p upward } 0 19 {A35R:C -> A34R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:C 0 2 A5R:U 0 3 A6R:C 0 4 A31R:G 0 5 A32R:A 0 6 A33R:G 0 7 A34R:U 0 [Edges] 0 {A3R:A -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A34R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A34R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:C -> A5R:U: adjacent_5p } 0 5 {A5R:U -> A4R:C: adjacent_3p } 0 6 {A4R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A33R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> A6R:C: adjacent_5p } 0 9 {A6R:C -> A5R:U: adjacent_3p } 0 10 {A5R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A32R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A31R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A31R:G -> A32R:A: adjacent_5p upward } 0 15 {A32R:A -> A31R:G: adjacent_3p downward } 0 16 {A32R:A -> A33R:G: adjacent_5p upward } 0 17 {A33R:G -> A32R:A: adjacent_3p downward } 0 18 {A33R:G -> A34R:U: adjacent_5p upward } 0 19 {A34R:U -> A33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:U 0 2 A6R:C 0 3 A7R:G 0 4 A30R:C 0 5 A31R:G 0 6 A32R:A 0 7 A33R:G 0 [Edges] 0 {A4R:C -> A5R:U: adjacent_5p } 0 1 {A5R:U -> A4R:C: adjacent_3p } 0 2 {A4R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A33R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:C: adjacent_5p } 0 5 {A6R:C -> A5R:U: adjacent_3p } 0 6 {A5R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A32R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:C -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:C: adjacent_3p downward } 0 10 {A6R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A31R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A30R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A30R:C -> A31R:G: adjacent_5p upward } 0 15 {A31R:G -> A30R:C: adjacent_3p downward } 0 16 {A31R:G -> A32R:A: adjacent_5p upward } 0 17 {A32R:A -> A31R:G: adjacent_3p downward } 0 18 {A32R:A -> A33R:G: adjacent_5p upward } 0 19 {A33R:G -> A32R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:C 0 2 A10R:U 0 3 A11R:U 0 4 A24R:A 0 5 A25R:A 0 6 A26R:G 0 7 A27R:A 0 [Edges] 0 {A8R:G -> A9R:C: adjacent_5p upward } 0 1 {A9R:C -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> A27R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A27R:A -> A8R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A9R:C -> A10R:U: adjacent_5p upward } 0 5 {A10R:U -> A9R:C: adjacent_3p downward } 0 6 {A9R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A26R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:U -> A11R:U: adjacent_5p upward } 0 9 {A11R:U -> A10R:U: adjacent_3p downward } 0 10 {A10R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A25R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A11R:U -> A24R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A24R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A24R:A -> A25R:A: adjacent_5p upward } 0 15 {A25R:A -> A24R:A: adjacent_3p downward } 0 16 {A25R:A -> A26R:G: adjacent_5p upward } 0 17 {A26R:G -> A25R:A: adjacent_3p downward } 0 18 {A26R:G -> A27R:A: adjacent_5p upward } 0 19 {A27R:A -> A26R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A9R:C 0 1 A10R:U 0 2 A11R:U 0 3 A12R:G 0 4 A23R:C 0 5 A24R:A 0 6 A25R:A 0 7 A26R:G 0 [Edges] 0 {A9R:C -> A10R:U: adjacent_5p upward } 0 1 {A10R:U -> A9R:C: adjacent_3p downward } 0 2 {A9R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A26R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:U -> A11R:U: adjacent_5p upward } 0 5 {A11R:U -> A10R:U: adjacent_3p downward } 0 6 {A10R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A25R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:U -> A12R:G: adjacent_5p upward } 0 9 {A12R:G -> A11R:U: adjacent_3p downward } 0 10 {A11R:U -> A24R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A24R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A12R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A23R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A23R:C -> A24R:A: adjacent_5p upward } 0 15 {A24R:A -> A23R:C: adjacent_3p downward } 0 16 {A24R:A -> A25R:A: adjacent_5p upward } 0 17 {A25R:A -> A24R:A: adjacent_3p downward } 0 18 {A25R:A -> A26R:G: adjacent_5p upward } 0 19 {A26R:G -> A25R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:U 0 1 A11R:U 0 2 A12R:G 0 3 A13R:C 0 4 A22R:G 0 5 A23R:C 0 6 A24R:A 0 7 A25R:A 0 [Edges] 0 {A10R:U -> A11R:U: adjacent_5p upward } 0 1 {A11R:U -> A10R:U: adjacent_3p downward } 0 2 {A10R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A25R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A11R:U -> A12R:G: adjacent_5p upward } 0 5 {A12R:G -> A11R:U: adjacent_3p downward } 0 6 {A11R:U -> A24R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A24R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A12R:G -> A13R:C: adjacent_5p upward } 0 9 {A13R:C -> A12R:G: adjacent_3p downward } 0 10 {A12R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A23R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A22R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A22R:G -> A23R:C: adjacent_5p upward } 0 15 {A23R:C -> A22R:G: adjacent_3p downward } 0 16 {A23R:C -> A24R:A: adjacent_5p upward } 0 17 {A24R:A -> A23R:C: adjacent_3p downward } 0 18 {A24R:A -> A25R:A: adjacent_5p upward } 0 19 {A25R:A -> A24R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:G 0 2 A13R:C 0 3 A14R:U 0 4 A21R:G 0 5 A22R:G 0 6 A23R:C 0 7 A24R:A 0 [Edges] 0 {A11R:U -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:U: adjacent_3p downward } 0 2 {A11R:U -> A24R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A24R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A12R:G -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A23R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:C -> A14R:U: adjacent_5p upward } 0 9 {A14R:U -> A13R:C: adjacent_3p downward } 0 10 {A13R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A22R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:U -> A21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A21R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A21R:G -> A22R:G: adjacent_5p upward } 0 15 {A22R:G -> A21R:G: adjacent_3p downward } 0 16 {A22R:G -> A23R:C: adjacent_5p upward } 0 17 {A23R:C -> A22R:G: adjacent_3p downward } 0 18 {A23R:C -> A24R:A: adjacent_5p upward } 0 19 {A24R:A -> A23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:C 0 2 A14R:U 0 3 A15R:G 0 4 A20R:C 0 5 A21R:G 0 6 A22R:G 0 7 A23R:C 0 [Edges] 0 {A12R:G -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:C -> A14R:U: adjacent_5p upward } 0 5 {A14R:U -> A13R:C: adjacent_3p downward } 0 6 {A13R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:U -> A15R:G: adjacent_5p upward } 0 9 {A15R:G -> A14R:U: adjacent_3p downward } 0 10 {A14R:U -> A21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A21R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A15R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A20R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A15R:G -> A21R:G: outward } 0 15 {A21R:G -> A15R:G: outward } 0 16 {A20R:C -> A21R:G: adjacent_5p } 0 17 {A21R:G -> A20R:C: adjacent_3p } 0 18 {A21R:G -> A22R:G: adjacent_5p upward } 0 19 {A22R:G -> A21R:G: adjacent_3p downward } 0 20 {A22R:G -> A23R:C: adjacent_5p upward } 0 21 {A23R:C -> A22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A13R:C 0 1 A14R:U 0 2 A15R:G 0 3 A16R:G 0 4 A19R:A 0 5 A20R:C 0 6 A21R:G 0 7 A22R:G 0 [Edges] 0 {A13R:C -> A14R:U: adjacent_5p upward } 0 1 {A14R:U -> A13R:C: adjacent_3p downward } 0 2 {A13R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A14R:U -> A15R:G: adjacent_5p upward } 0 5 {A15R:G -> A14R:U: adjacent_3p downward } 0 6 {A14R:U -> A21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A21R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A15R:G -> A16R:G: adjacent_5p upward } 0 9 {A16R:G -> A15R:G: adjacent_3p downward } 0 10 {A15R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A15R:G -> A21R:G: outward } 0 13 {A21R:G -> A15R:G: outward } 0 14 {A16R:G -> A19R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {A19R:A -> A16R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {A19R:A -> A20R:C: adjacent_5p } 0 17 {A20R:C -> A19R:A: adjacent_3p } 0 18 {A20R:C -> A21R:G: adjacent_5p } 0 19 {A21R:G -> A20R:C: adjacent_3p } 0 20 {A21R:G -> A22R:G: adjacent_5p upward } 0 21 {A22R:G -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:C 0 3 A5R:U 0 4 A25R:A 0 5 A26R:G 0 6 A27R:C 0 7 A28R:C 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A28R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A27R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A26R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A25R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A25R:A -> A26R:G: adjacent_5p } 0 15 {A26R:G -> A25R:A: adjacent_3p } 0 16 {A26R:G -> A27R:C: adjacent_5p upward } 0 17 {A27R:C -> A26R:G: adjacent_3p downward } 0 18 {A27R:C -> A28R:C: adjacent_5p upward } 0 19 {A28R:C -> A27R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:C 0 2 A5R:U 0 3 A6R:G 0 4 A24R:C 0 5 A25R:A 0 6 A26R:G 0 7 A27R:C 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A26R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> A6R:G: adjacent_5p upward } 0 9 {A6R:G -> A5R:U: adjacent_3p downward } 0 10 {A5R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A25R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A24R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A24R:C -> A25R:A: adjacent_5p } 0 15 {A25R:A -> A24R:C: adjacent_3p } 0 16 {A25R:A -> A26R:G: adjacent_5p } 0 17 {A26R:G -> A25R:A: adjacent_3p } 0 18 {A26R:G -> A27R:C: adjacent_5p upward } 0 19 {A27R:C -> A26R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:U 0 2 A6R:G 0 3 A7R:U 0 4 A23R:U 0 5 A24R:C 0 6 A25R:A 0 7 A26R:G 0 [Edges] 0 {A4R:C -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A26R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A25R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:G -> A7R:U: adjacent_5p upward } 0 9 {A7R:U -> A6R:G: adjacent_3p downward } 0 10 {A6R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A24R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:U -> A23R:U: pairing antiparallel cis XVI Ws/Ww } 0 13 {A23R:U -> A7R:U: pairing antiparallel cis XVI Ww/Ws } 0 14 {A23R:U -> A24R:C: adjacent_5p upward } 0 15 {A24R:C -> A23R:U: adjacent_3p downward } 0 16 {A24R:C -> A25R:A: adjacent_5p } 0 17 {A25R:A -> A24R:C: adjacent_3p } 0 18 {A25R:A -> A26R:G: adjacent_5p } 0 19 {A26R:G -> A25R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:G 0 2 A7R:U 0 3 A8R:U 0 4 A22R:U 0 5 A23R:U 0 6 A24R:C 0 7 A25R:A 0 [Edges] 0 {A5R:U -> A6R:G: adjacent_5p upward } 0 1 {A6R:G -> A5R:U: adjacent_3p downward } 0 2 {A5R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A25R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:G -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A24R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:U -> A8R:U: adjacent_5p upward } 0 9 {A8R:U -> A7R:U: adjacent_3p downward } 0 10 {A7R:U -> A23R:U: pairing antiparallel cis XVI Ws/Ww } 0 11 {A23R:U -> A7R:U: pairing antiparallel cis XVI Ww/Ws } 0 12 {A8R:U -> A22R:U: pairing antiparallel cis XVI Ww/Ws } 0 13 {A22R:U -> A8R:U: pairing antiparallel cis XVI Ws/Ww } 0 14 {A22R:U -> A23R:U: adjacent_5p } 0 15 {A23R:U -> A22R:U: adjacent_3p } 0 16 {A23R:U -> A24R:C: adjacent_5p upward } 0 17 {A24R:C -> A23R:U: adjacent_3p downward } 0 18 {A24R:C -> A25R:A: adjacent_5p } 0 19 {A25R:A -> A24R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:U 0 2 A8R:U 0 3 A9R:U 0 4 A21R:U 0 5 A22R:U 0 6 A23R:U 0 7 A24R:C 0 [Edges] 0 {A6R:G -> A7R:U: adjacent_5p upward } 0 1 {A7R:U -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:U -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:U: adjacent_3p downward } 0 6 {A7R:U -> A23R:U: pairing antiparallel cis XVI Ws/Ww } 0 7 {A23R:U -> A7R:U: pairing antiparallel cis XVI Ww/Ws } 0 8 {A8R:U -> A9R:U: adjacent_5p } 0 9 {A9R:U -> A8R:U: adjacent_3p } 0 10 {A8R:U -> A22R:U: pairing antiparallel cis XVI Ww/Ws } 0 11 {A22R:U -> A8R:U: pairing antiparallel cis XVI Ws/Ww } 0 12 {A9R:U -> A21R:U: pairing antiparallel cis XVI Ww/Ws } 0 13 {A21R:U -> A9R:U: pairing antiparallel cis XVI Ws/Ww } 0 14 {A21R:U -> A22R:U: adjacent_5p } 0 15 {A22R:U -> A21R:U: adjacent_3p } 0 16 {A22R:U -> A23R:U: adjacent_5p } 0 17 {A23R:U -> A22R:U: adjacent_3p } 0 18 {A23R:U -> A24R:C: adjacent_5p upward } 0 19 {A24R:C -> A23R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:U 0 2 A10R:U 0 3 A11R:U 0 4 A19R:A 0 5 A20R:C 0 6 A21R:U 0 7 A22R:U 0 [Edges] 0 {A8R:U -> A9R:U: adjacent_5p } 0 1 {A9R:U -> A8R:U: adjacent_3p } 0 2 {A8R:U -> A22R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {A22R:U -> A8R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {A9R:U -> A10R:U: adjacent_5p upward } 0 5 {A10R:U -> A9R:U: adjacent_3p downward } 0 6 {A9R:U -> A21R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {A21R:U -> A9R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {A10R:U -> A11R:U: adjacent_5p upward } 0 9 {A11R:U -> A10R:U: adjacent_3p downward } 0 10 {A11R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A19R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A19R:A -> A20R:C: adjacent_5p upward } 0 13 {A20R:C -> A19R:A: adjacent_3p downward } 0 14 {A20R:C -> A21R:U: adjacent_5p upward } 0 15 {A21R:U -> A20R:C: adjacent_3p downward } 0 16 {A21R:U -> A22R:U: adjacent_5p } 0 17 {A22R:U -> A21R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A9R:U 0 1 A10R:U 0 2 A11R:U 0 3 A12R:C 0 4 A18R:G 0 5 A19R:A 0 6 A20R:C 0 7 A21R:U 0 [Edges] 0 {A9R:U -> A10R:U: adjacent_5p upward } 0 1 {A10R:U -> A9R:U: adjacent_3p downward } 0 2 {A9R:U -> A21R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {A21R:U -> A9R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {A10R:U -> A11R:U: adjacent_5p upward } 0 5 {A11R:U -> A10R:U: adjacent_3p downward } 0 6 {A11R:U -> A12R:C: adjacent_5p upward } 0 7 {A12R:C -> A11R:U: adjacent_3p downward } 0 8 {A11R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A19R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A12R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A18R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A18R:G -> A19R:A: adjacent_5p upward } 0 13 {A19R:A -> A18R:G: adjacent_3p downward } 0 14 {A19R:A -> A20R:C: adjacent_5p upward } 0 15 {A20R:C -> A19R:A: adjacent_3p downward } 0 16 {A20R:C -> A21R:U: adjacent_5p upward } 0 17 {A21R:U -> A20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:C 0 2 A13R:U 0 3 A14R:C 0 4 A16R:C 0 5 A17R:U 0 6 A18R:G 0 7 A19R:A 0 [Edges] 0 {A11R:U -> A12R:C: adjacent_5p upward } 0 1 {A12R:C -> A11R:U: adjacent_3p downward } 0 2 {A11R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A19R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A12R:C -> A13R:U: adjacent_5p } 0 5 {A13R:U -> A12R:C: adjacent_3p } 0 6 {A12R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A18R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:U -> A14R:C: adjacent_5p } 0 9 {A14R:C -> A13R:U: adjacent_3p } 0 10 {A13R:U -> A18R:G: outward } 0 11 {A18R:G -> A13R:U: outward } 0 12 {A14R:C -> A16R:C: pairing antiparallel cis one_hbond 137 Wh/Ws } 0 13 {A16R:C -> A14R:C: pairing antiparallel cis one_hbond 137 Ws/Wh } 0 14 {A16R:C -> A17R:U: adjacent_5p } 0 15 {A17R:U -> A16R:C: adjacent_3p } 0 16 {A17R:U -> A18R:G: adjacent_5p } 0 17 {A18R:G -> A17R:U: adjacent_3p } 0 18 {A18R:G -> A19R:A: adjacent_5p upward } 0 19 {A19R:A -> A18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . 10 . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 11 . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:A 0 3 A5R:G 0 4 A30R:C 0 5 A31R:U 0 6 A32R:C 0 7 A33R:C 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A33R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A33R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A32R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A32R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:G -> A33R:C: outward } 0 9 {A33R:C -> A3R:G: outward } 0 10 {A4R:A -> A5R:G: adjacent_5p upward } 0 11 {A5R:G -> A4R:A: adjacent_3p downward } 0 12 {A4R:A -> A31R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A31R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A5R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A30R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A30R:C -> A31R:U: adjacent_5p upward } 0 17 {A31R:U -> A30R:C: adjacent_3p downward } 0 18 {A31R:U -> A32R:C: adjacent_5p } 0 19 {A32R:C -> A31R:U: adjacent_3p } 0 20 {A32R:C -> A33R:C: adjacent_5p } 0 21 {A33R:C -> A32R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:A 0 2 A5R:G 0 3 A6R:C 0 4 A29R:G 0 5 A30R:C 0 6 A31R:U 0 7 A32R:C 0 [Edges] 0 {A3R:G -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A32R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A32R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A31R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A31R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:G -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A30R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A29R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A29R:G -> A30R:C: adjacent_5p upward } 0 15 {A30R:C -> A29R:G: adjacent_3p downward } 0 16 {A30R:C -> A31R:U: adjacent_5p upward } 0 17 {A31R:U -> A30R:C: adjacent_3p downward } 0 18 {A31R:U -> A32R:C: adjacent_5p } 0 19 {A32R:C -> A31R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:A 0 2 A11R:U 0 3 A12R:C 0 4 A25R:G 0 5 A26R:A 0 6 A27R:U 0 7 A28R:C 0 [Edges] 0 {A9R:G -> A10R:A: adjacent_5p upward } 0 1 {A10R:A -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A28R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:A -> A11R:U: adjacent_5p } 0 5 {A11R:U -> A10R:A: adjacent_3p } 0 6 {A10R:A -> A27R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A27R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:U -> A12R:C: adjacent_5p upward } 0 9 {A12R:C -> A11R:U: adjacent_3p downward } 0 10 {A11R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A26R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A12R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A25R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A25R:G -> A26R:A: adjacent_5p upward } 0 15 {A26R:A -> A25R:G: adjacent_3p downward } 0 16 {A26R:A -> A27R:U: adjacent_5p upward } 0 17 {A27R:U -> A26R:A: adjacent_3p downward } 0 18 {A27R:U -> A28R:C: adjacent_5p upward } 0 19 {A28R:C -> A27R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A13R:C 0 1 A14R:C 0 2 A15R:G 0 3 A16R:G 0 4 A19R:A 0 5 A20R:C 0 6 A21R:G 0 7 A22R:G 0 [Edges] 0 {A13R:C -> A14R:C: adjacent_5p } 0 1 {A14R:C -> A13R:C: adjacent_3p } 0 2 {A13R:C -> A22R:G: pairing antiparallel cis Ww/Ww } 0 3 {A22R:G -> A13R:C: pairing antiparallel cis Ww/Ww } 0 4 {A14R:C -> A15R:G: adjacent_5p } 0 5 {A15R:G -> A14R:C: adjacent_3p } 0 6 {A14R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A15R:G -> A16R:G: adjacent_5p } 0 9 {A16R:G -> A15R:G: adjacent_3p } 0 10 {A15R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A16R:G -> A19R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A19R:A -> A16R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A19R:A -> A20R:C: adjacent_5p } 0 15 {A20R:C -> A19R:A: adjacent_3p } 0 16 {A20R:C -> A21R:G: adjacent_5p } 0 17 {A21R:G -> A20R:C: adjacent_3p } 0 18 {A21R:G -> A22R:G: adjacent_5p upward } 0 19 {A22R:G -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:G 0 3 A5R:U 0 4 A25R:G 0 5 A26R:C 0 6 A27R:U 0 7 A28R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A28R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A27R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A27R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A26R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:U -> A25R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A25R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A25R:G -> A26R:C: adjacent_5p upward } 0 15 {A26R:C -> A25R:G: adjacent_3p downward } 0 16 {A26R:C -> A27R:U: adjacent_5p upward } 0 17 {A27R:U -> A26R:C: adjacent_3p downward } 0 18 {A27R:U -> A28R:C: adjacent_5p } 0 19 {A28R:C -> A27R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:G 0 2 A5R:U 0 3 A6R:G 0 4 A24R:C 0 5 A25R:G 0 6 A26R:C 0 7 A27R:U 0 [Edges] 0 {A3R:A -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A27R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A27R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A26R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> A6R:G: adjacent_5p } 0 9 {A6R:G -> A5R:U: adjacent_3p } 0 10 {A5R:U -> A25R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A25R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A6R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A24R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A24R:C -> A25R:G: adjacent_5p } 0 15 {A25R:G -> A24R:C: adjacent_3p } 0 16 {A25R:G -> A26R:C: adjacent_5p upward } 0 17 {A26R:C -> A25R:G: adjacent_3p downward } 0 18 {A26R:C -> A27R:U: adjacent_5p upward } 0 19 {A27R:U -> A26R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:U 0 2 A10R:C 0 3 A11R:A 0 4 A20R:U 0 5 A21R:G 0 6 A22R:G 0 7 A23R:A 0 [Edges] 0 {A8R:U -> A9R:U: adjacent_5p upward } 0 1 {A9R:U -> A8R:U: adjacent_3p downward } 0 2 {A8R:U -> A23R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A23R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:U -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:U: adjacent_3p downward } 0 6 {A9R:U -> A22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A22R:G -> A9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A10R:C -> A11R:A: adjacent_5p upward } 0 9 {A11R:A -> A10R:C: adjacent_3p downward } 0 10 {A10R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A21R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A11R:A -> A20R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 13 {A20R:U -> A11R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 14 {A11R:A -> A21R:G: outward } 0 15 {A21R:G -> A11R:A: outward } 0 16 {A20R:U -> A21R:G: adjacent_5p } 0 17 {A21R:G -> A20R:U: adjacent_3p } 0 18 {A21R:G -> A22R:G: adjacent_5p upward } 0 19 {A22R:G -> A21R:G: adjacent_3p downward } 0 20 {A22R:G -> A23R:A: adjacent_5p upward } 0 21 {A23R:A -> A22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A9R:U 0 1 A10R:C 0 2 A11R:A 0 3 A12R:A 0 4 A19R:U 0 5 A20R:U 0 6 A21R:G 0 7 A22R:G 0 [Edges] 0 {A9R:U -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:U: adjacent_3p downward } 0 2 {A9R:U -> A22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A22R:G -> A9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A10R:C -> A11R:A: adjacent_5p upward } 0 5 {A11R:A -> A10R:C: adjacent_3p downward } 0 6 {A10R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:A -> A12R:A: adjacent_5p upward } 0 9 {A12R:A -> A11R:A: adjacent_3p downward } 0 10 {A11R:A -> A20R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {A20R:U -> A11R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {A11R:A -> A21R:G: outward } 0 13 {A21R:G -> A11R:A: outward } 0 14 {A12R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A19R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A19R:U -> A20R:U: adjacent_5p upward } 0 17 {A20R:U -> A19R:U: adjacent_3p downward } 0 18 {A20R:U -> A21R:G: adjacent_5p } 0 19 {A21R:G -> A20R:U: adjacent_3p } 0 20 {A21R:G -> A22R:G: adjacent_5p upward } 0 21 {A22R:G -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:U 0 3 A5R:C 0 4 A20R:G 0 5 A21R:A 0 6 A22R:A 0 7 A23R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:U: adjacent_5p } 0 5 {A4R:U -> A3R:U: adjacent_3p } 0 6 {A3R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A22R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:U -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:U: adjacent_3p downward } 0 10 {A4R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A21R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A20R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A20R:G -> A21R:A: adjacent_5p upward } 0 15 {A21R:A -> A20R:G: adjacent_3p downward } 0 16 {A21R:A -> A22R:A: adjacent_5p upward } 0 17 {A22R:A -> A21R:A: adjacent_3p downward } 0 18 {A22R:A -> A23R:C: adjacent_5p upward } 0 19 {A23R:C -> A22R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:U 0 2 A5R:C 0 3 A6R:C 0 4 A19R:G 0 5 A20R:G 0 6 A21R:A 0 7 A22R:A 0 [Edges] 0 {A3R:U -> A4R:U: adjacent_5p } 0 1 {A4R:U -> A3R:U: adjacent_3p } 0 2 {A3R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A22R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:U -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:U: adjacent_3p downward } 0 6 {A4R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A21R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:C -> A6R:C: adjacent_5p } 0 9 {A6R:C -> A5R:C: adjacent_3p } 0 10 {A5R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A19R:G -> A20R:G: adjacent_5p upward } 0 15 {A20R:G -> A19R:G: adjacent_3p downward } 0 16 {A20R:G -> A21R:A: adjacent_5p upward } 0 17 {A21R:A -> A20R:G: adjacent_3p downward } 0 18 {A21R:A -> A22R:A: adjacent_5p upward } 0 19 {A22R:A -> A21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:C 0 2 A9R:U 0 3 A10R:G 0 4 A14R:A 0 5 A15R:A 0 6 A16R:G 0 7 A17R:G 0 [Edges] 0 {A7R:C -> A8R:C: adjacent_5p upward } 0 1 {A8R:C -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:C -> A9R:U: adjacent_5p } 0 5 {A9R:U -> A8R:C: adjacent_3p } 0 6 {A8R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A16R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:U -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:U: adjacent_3p downward } 0 10 {A10R:G -> A14R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {A14R:A -> A10R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {A14R:A -> A15R:A: adjacent_5p upward } 0 13 {A15R:A -> A14R:A: adjacent_3p downward } 0 14 {A15R:A -> A16R:G: adjacent_5p upward } 0 15 {A16R:G -> A15R:A: adjacent_3p downward } 0 16 {A16R:G -> A17R:G: adjacent_5p upward } 0 17 {A17R:G -> A16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:A 0 2 A7R:C 0 3 A8R:U 0 4 A22R:A 0 5 A23R:G 0 6 A24R:U 0 7 A25R:C 0 [Edges] 0 {A5R:G -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:A -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A24R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:C -> A8R:U: adjacent_5p } 0 9 {A8R:U -> A7R:C: adjacent_3p } 0 10 {A7R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A23R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A22R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A22R:A -> A23R:G: adjacent_5p upward } 0 15 {A23R:G -> A22R:A: adjacent_3p downward } 0 16 {A23R:G -> A24R:U: adjacent_5p upward } 0 17 {A24R:U -> A23R:G: adjacent_3p downward } 0 18 {A24R:U -> A25R:C: adjacent_5p } 0 19 {A25R:C -> A24R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:C 0 2 A8R:U 0 3 A9R:G 0 4 A21R:U 0 5 A22R:A 0 6 A23R:G 0 7 A24R:U 0 [Edges] 0 {A6R:A -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A24R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:C -> A8R:U: adjacent_5p } 0 5 {A8R:U -> A7R:C: adjacent_3p } 0 6 {A7R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A23R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:U -> A9R:G: adjacent_5p } 0 9 {A9R:G -> A8R:U: adjacent_3p } 0 10 {A8R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A22R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:G -> A21R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A21R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A9R:G -> A22R:A: outward } 0 15 {A22R:A -> A9R:G: outward } 0 16 {A21R:U -> A22R:A: adjacent_5p } 0 17 {A22R:A -> A21R:U: adjacent_3p } 0 18 {A22R:A -> A23R:G: adjacent_5p upward } 0 19 {A23R:G -> A22R:A: adjacent_3p downward } 0 20 {A23R:G -> A24R:U: adjacent_5p upward } 0 21 {A24R:U -> A23R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:U 0 2 A9R:G 0 3 A10R:G 0 4 A20R:U 0 5 A21R:U 0 6 A22R:A 0 7 A23R:G 0 [Edges] 0 {A7R:C -> A8R:U: adjacent_5p } 0 1 {A8R:U -> A7R:C: adjacent_3p } 0 2 {A7R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:U -> A9R:G: adjacent_5p } 0 5 {A9R:G -> A8R:U: adjacent_3p } 0 6 {A8R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A22R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:G -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> A21R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A21R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A9R:G -> A22R:A: outward } 0 13 {A22R:A -> A9R:G: outward } 0 14 {A10R:G -> A20R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A20R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A20R:U -> A21R:U: adjacent_5p upward } 0 17 {A21R:U -> A20R:U: adjacent_3p downward } 0 18 {A21R:U -> A22R:A: adjacent_5p } 0 19 {A22R:A -> A21R:U: adjacent_3p } 0 20 {A22R:A -> A23R:G: adjacent_5p upward } 0 21 {A23R:G -> A22R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:G 0 2 A10R:G 0 3 A11R:G 0 4 A19R:U 0 5 A20R:U 0 6 A21R:U 0 7 A22R:A 0 [Edges] 0 {A8R:U -> A9R:G: adjacent_5p } 0 1 {A9R:G -> A8R:U: adjacent_3p } 0 2 {A8R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A22R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:G -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> A21R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A21R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A9R:G -> A22R:A: outward } 0 9 {A22R:A -> A9R:G: outward } 0 10 {A10R:G -> A11R:G: adjacent_5p upward } 0 11 {A11R:G -> A10R:G: adjacent_3p downward } 0 12 {A10R:G -> A20R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A20R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A11R:G -> A19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A19R:U -> A11R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A19R:U -> A20R:U: adjacent_5p upward } 0 17 {A20R:U -> A19R:U: adjacent_3p downward } 0 18 {A20R:U -> A21R:U: adjacent_5p upward } 0 19 {A21R:U -> A20R:U: adjacent_3p downward } 0 20 {A21R:U -> A22R:A: adjacent_5p } 0 21 {A22R:A -> A21R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:G 0 2 A11R:G 0 3 A12R:C 0 4 A18R:G 0 5 A19R:U 0 6 A20R:U 0 7 A21R:U 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A21R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A21R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A10R:G -> A11R:G: adjacent_5p upward } 0 5 {A11R:G -> A10R:G: adjacent_3p downward } 0 6 {A10R:G -> A20R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A20R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A11R:G -> A12R:C: adjacent_5p upward } 0 9 {A12R:C -> A11R:G: adjacent_3p downward } 0 10 {A11R:G -> A19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A19R:U -> A11R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A12R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A18R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A18R:G -> A19R:U: adjacent_5p upward } 0 15 {A19R:U -> A18R:G: adjacent_3p downward } 0 16 {A19R:U -> A20R:U: adjacent_5p upward } 0 17 {A20R:U -> A19R:U: adjacent_3p downward } 0 18 {A20R:U -> A21R:U: adjacent_5p upward } 0 19 {A21R:U -> A20R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:G 0 2 A12R:C 0 3 A13R:G 0 4 A17R:A 0 5 A18R:G 0 6 A19R:U 0 7 A20R:U 0 [Edges] 0 {A10R:G -> A11R:G: adjacent_5p upward } 0 1 {A11R:G -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> A20R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A20R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A11R:G -> A12R:C: adjacent_5p upward } 0 5 {A12R:C -> A11R:G: adjacent_3p downward } 0 6 {A11R:G -> A19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A19R:U -> A11R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A12R:C -> A13R:G: adjacent_5p upward } 0 9 {A13R:G -> A12R:C: adjacent_3p downward } 0 10 {A12R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A18R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:G -> A17R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {A17R:A -> A13R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {A17R:A -> A18R:G: adjacent_5p upward } 0 15 {A18R:G -> A17R:A: adjacent_3p downward } 0 16 {A18R:G -> A19R:U: adjacent_5p upward } 0 17 {A19R:U -> A18R:G: adjacent_3p downward } 0 18 {A19R:U -> A20R:U: adjacent_5p upward } 0 19 {A20R:U -> A19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:U 0 3 A5R:C 0 4 B115R:G 0 5 B116R:A 0 6 B117R:U 0 7 B118R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B118R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B118R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> B117R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B117R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:U -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:U: adjacent_3p downward } 0 10 {A4R:U -> B116R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B116R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:C -> B115R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B115R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B115R:G -> B116R:A: adjacent_5p upward } 0 15 {B116R:A -> B115R:G: adjacent_3p downward } 0 16 {B116R:A -> B117R:U: adjacent_5p upward } 0 17 {B117R:U -> B116R:A: adjacent_3p downward } 0 18 {B117R:U -> B118R:C: adjacent_5p } 0 19 {B118R:C -> B117R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A19R:U 0 1 A20R:G 0 2 A21R:C 0 3 A22R:C 0 4 B102R:G 0 5 B103R:G 0 6 B104R:C 0 7 B105R:A 0 [Edges] 0 {A19R:U -> A20R:G: adjacent_5p } 0 1 {A20R:G -> A19R:U: adjacent_3p } 0 2 {A19R:U -> B105R:A: pairing antiparallel cis Ww/Ww } 0 3 {B105R:A -> A19R:U: pairing antiparallel cis Ww/Ww } 0 4 {A20R:G -> A21R:C: adjacent_5p upward } 0 5 {A21R:C -> A20R:G: adjacent_3p downward } 0 6 {A20R:G -> B104R:C: pairing antiparallel cis 130 Ww/Ww } 0 7 {B104R:C -> A20R:G: pairing antiparallel cis 130 Ww/Ww } 0 8 {A21R:C -> A22R:C: adjacent_5p } 0 9 {A22R:C -> A21R:C: adjacent_3p } 0 10 {A21R:C -> B103R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B103R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A22R:C -> B102R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B102R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B102R:G -> B103R:G: adjacent_5p upward } 0 15 {B103R:G -> B102R:G: adjacent_3p downward } 0 16 {B103R:G -> B104R:C: adjacent_5p upward } 0 17 {B104R:C -> B103R:G: adjacent_3p downward } 0 18 {B104R:C -> B105R:A: adjacent_5p upward } 0 19 {B105R:A -> B104R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A19R:G 0 1 A20R:G 0 2 A21R:A 0 3 A22R:C 0 4 B46R:G 0 5 B47R:U 0 6 B48R:C 0 7 B49R:C 0 [Edges] 0 {A19R:G -> A20R:G: adjacent_5p upward } 0 1 {A20R:G -> A19R:G: adjacent_3p downward } 0 2 {A19R:G -> B49R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B49R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A20R:G -> A21R:A: adjacent_5p upward } 0 5 {A21R:A -> A20R:G: adjacent_3p downward } 0 6 {A20R:G -> B48R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B48R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A21R:A -> A22R:C: adjacent_5p upward } 0 9 {A22R:C -> A21R:A: adjacent_3p downward } 0 10 {A21R:A -> B47R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B47R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A22R:C -> B46R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B46R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B46R:G -> B47R:U: adjacent_5p upward } 0 15 {B47R:U -> B46R:G: adjacent_3p downward } 0 16 {B47R:U -> B48R:C: adjacent_5p upward } 0 17 {B48R:C -> B47R:U: adjacent_3p downward } 0 18 {B48R:C -> B49R:C: adjacent_5p upward } 0 19 {B49R:C -> B48R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A20R:G 0 1 A21R:A 0 2 A22R:C 0 3 A23R:C 0 4 B45R:A 0 5 B46R:G 0 6 B47R:U 0 7 B48R:C 0 [Edges] 0 {A20R:G -> A21R:A: adjacent_5p upward } 0 1 {A21R:A -> A20R:G: adjacent_3p downward } 0 2 {A20R:G -> B48R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B48R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A21R:A -> A22R:C: adjacent_5p upward } 0 5 {A22R:C -> A21R:A: adjacent_3p downward } 0 6 {A21R:A -> B47R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B47R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A22R:C -> A23R:C: adjacent_5p upward } 0 9 {A23R:C -> A22R:C: adjacent_3p downward } 0 10 {A22R:C -> B46R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B46R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A23R:C -> B45R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 13 {B45R:A -> A23R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 14 {B45R:A -> B46R:G: adjacent_5p upward } 0 15 {B46R:G -> B45R:A: adjacent_3p downward } 0 16 {B46R:G -> B47R:U: adjacent_5p upward } 0 17 {B47R:U -> B46R:G: adjacent_3p downward } 0 18 {B47R:U -> B48R:C: adjacent_5p upward } 0 19 {B48R:C -> B47R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A27R:C 0 1 A28R:C 0 2 A29R:A 0 3 A30R:G 0 4 B40R:C 0 5 B41R:U 0 6 B42R:G 0 7 B43R:G 0 [Edges] 0 {A27R:C -> A28R:C: adjacent_5p } 0 1 {A28R:C -> A27R:C: adjacent_3p } 0 2 {A27R:C -> B43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B43R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A28R:C -> A29R:A: adjacent_5p upward } 0 5 {A29R:A -> A28R:C: adjacent_3p downward } 0 6 {A28R:C -> B42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B42R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A29R:A -> A30R:G: adjacent_5p upward } 0 9 {A30R:G -> A29R:A: adjacent_3p downward } 0 10 {A29R:A -> B41R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B41R:U -> A29R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A29R:A -> B42R:G: outward } 0 13 {B42R:G -> A29R:A: outward } 0 14 {A30R:G -> B40R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B40R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B40R:C -> B41R:U: adjacent_5p upward } 0 17 {B41R:U -> B40R:C: adjacent_3p downward } 0 18 {B41R:U -> B42R:G: adjacent_5p upward } 0 19 {B42R:G -> B41R:U: adjacent_3p downward } 0 20 {B42R:G -> B43R:G: adjacent_5p upward } 0 21 {B43R:G -> B42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C19R:G 0 1 C20R:G 0 2 C21R:A 0 3 C22R:C 0 4 D46R:G 0 5 D47R:U 0 6 D48R:C 0 7 D49R:C 0 [Edges] 0 {C19R:G -> C20R:G: adjacent_5p upward } 0 1 {C20R:G -> C19R:G: adjacent_3p downward } 0 2 {C19R:G -> D49R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D49R:C -> C19R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C20R:G -> C21R:A: adjacent_5p upward } 0 5 {C21R:A -> C20R:G: adjacent_3p downward } 0 6 {C20R:G -> D48R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D48R:C -> C20R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C21R:A -> C22R:C: adjacent_5p upward } 0 9 {C22R:C -> C21R:A: adjacent_3p downward } 0 10 {C21R:A -> D47R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D47R:U -> C21R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C22R:C -> D46R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D46R:G -> C22R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D46R:G -> D47R:U: adjacent_5p upward } 0 15 {D47R:U -> D46R:G: adjacent_3p downward } 0 16 {D47R:U -> D48R:C: adjacent_5p upward } 0 17 {D48R:C -> D47R:U: adjacent_3p downward } 0 18 {D48R:C -> D49R:C: adjacent_5p upward } 0 19 {D49R:C -> D48R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C20R:G 0 1 C21R:A 0 2 C22R:C 0 3 C23R:C 0 4 D45R:A 0 5 D46R:G 0 6 D47R:U 0 7 D48R:C 0 [Edges] 0 {C20R:G -> C21R:A: adjacent_5p upward } 0 1 {C21R:A -> C20R:G: adjacent_3p downward } 0 2 {C20R:G -> D48R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D48R:C -> C20R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C21R:A -> C22R:C: adjacent_5p upward } 0 5 {C22R:C -> C21R:A: adjacent_3p downward } 0 6 {C21R:A -> D47R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D47R:U -> C21R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C22R:C -> C23R:C: adjacent_5p upward } 0 9 {C23R:C -> C22R:C: adjacent_3p downward } 0 10 {C22R:C -> D46R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D46R:G -> C22R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C23R:C -> D45R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 13 {D45R:A -> C23R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 14 {D45R:A -> D46R:G: adjacent_5p upward } 0 15 {D46R:G -> D45R:A: adjacent_3p downward } 0 16 {D46R:G -> D47R:U: adjacent_5p upward } 0 17 {D47R:U -> D46R:G: adjacent_3p downward } 0 18 {D47R:U -> D48R:C: adjacent_5p upward } 0 19 {D48R:C -> D47R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C27R:C 0 1 C28R:C 0 2 C29R:A 0 3 C30R:G 0 4 D40R:C 0 5 D41R:U 0 6 D42R:G 0 7 D43R:G 0 [Edges] 0 {C27R:C -> C28R:C: adjacent_5p } 0 1 {C28R:C -> C27R:C: adjacent_3p } 0 2 {C27R:C -> D43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D43R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C28R:C -> C29R:A: adjacent_5p } 0 5 {C29R:A -> C28R:C: adjacent_3p } 0 6 {C28R:C -> D42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D42R:G -> C28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C29R:A -> C30R:G: adjacent_5p upward } 0 9 {C30R:G -> C29R:A: adjacent_3p downward } 0 10 {C29R:A -> D41R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D41R:U -> C29R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C29R:A -> D42R:G: outward } 0 13 {D42R:G -> C29R:A: outward } 0 14 {C30R:G -> D40R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D40R:C -> C30R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D40R:C -> D41R:U: adjacent_5p upward } 0 17 {D41R:U -> D40R:C: adjacent_3p downward } 0 18 {D41R:U -> D42R:G: adjacent_5p upward } 0 19 {D42R:G -> D41R:U: adjacent_3p downward } 0 20 {D42R:G -> D43R:G: adjacent_5p upward } 0 21 {D43R:G -> D42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E19R:G 0 1 E20R:G 0 2 E21R:A 0 3 E22R:C 0 4 F46R:G 0 5 F47R:U 0 6 F48R:C 0 7 F49R:C 0 [Edges] 0 {E19R:G -> E20R:G: adjacent_5p upward } 0 1 {E20R:G -> E19R:G: adjacent_3p downward } 0 2 {E19R:G -> F49R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {F49R:C -> E19R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E20R:G -> E21R:A: adjacent_5p upward } 0 5 {E21R:A -> E20R:G: adjacent_3p downward } 0 6 {E20R:G -> F48R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {F48R:C -> E20R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E21R:A -> E22R:C: adjacent_5p upward } 0 9 {E22R:C -> E21R:A: adjacent_3p downward } 0 10 {E21R:A -> F47R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {F47R:U -> E21R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {E22R:C -> F46R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {F46R:G -> E22R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {F46R:G -> F47R:U: adjacent_5p upward } 0 15 {F47R:U -> F46R:G: adjacent_3p downward } 0 16 {F47R:U -> F48R:C: adjacent_5p upward } 0 17 {F48R:C -> F47R:U: adjacent_3p downward } 0 18 {F48R:C -> F49R:C: adjacent_5p upward } 0 19 {F49R:C -> F48R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E20R:G 0 1 E21R:A 0 2 E22R:C 0 3 E23R:C 0 4 F45R:A 0 5 F46R:G 0 6 F47R:U 0 7 F48R:C 0 [Edges] 0 {E20R:G -> E21R:A: adjacent_5p upward } 0 1 {E21R:A -> E20R:G: adjacent_3p downward } 0 2 {E20R:G -> F48R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {F48R:C -> E20R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E21R:A -> E22R:C: adjacent_5p upward } 0 5 {E22R:C -> E21R:A: adjacent_3p downward } 0 6 {E21R:A -> F47R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {F47R:U -> E21R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {E22R:C -> E23R:C: adjacent_5p upward } 0 9 {E23R:C -> E22R:C: adjacent_3p downward } 0 10 {E22R:C -> F46R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {F46R:G -> E22R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {E23R:C -> F45R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 13 {F45R:A -> E23R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 14 {F45R:A -> F46R:G: adjacent_5p upward } 0 15 {F46R:G -> F45R:A: adjacent_3p downward } 0 16 {F46R:G -> F47R:U: adjacent_5p upward } 0 17 {F47R:U -> F46R:G: adjacent_3p downward } 0 18 {F47R:U -> F48R:C: adjacent_5p upward } 0 19 {F48R:C -> F47R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E27R:C 0 1 E28R:C 0 2 E29R:A 0 3 E30R:G 0 4 F40R:C 0 5 F41R:U 0 6 F42R:G 0 7 F43R:G 0 [Edges] 0 {E27R:C -> E28R:C: adjacent_5p } 0 1 {E28R:C -> E27R:C: adjacent_3p } 0 2 {E27R:C -> F43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {F43R:G -> E27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E28R:C -> E29R:A: adjacent_5p } 0 5 {E29R:A -> E28R:C: adjacent_3p } 0 6 {E28R:C -> F42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {F42R:G -> E28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E29R:A -> E30R:G: adjacent_5p upward } 0 9 {E30R:G -> E29R:A: adjacent_3p downward } 0 10 {E29R:A -> F41R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {F41R:U -> E29R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {E29R:A -> F42R:G: outward } 0 13 {F42R:G -> E29R:A: outward } 0 14 {E30R:G -> F40R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {F40R:C -> E30R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {F40R:C -> F41R:U: adjacent_5p upward } 0 17 {F41R:U -> F40R:C: adjacent_3p downward } 0 18 {F41R:U -> F42R:G: adjacent_5p upward } 0 19 {F42R:G -> F41R:U: adjacent_3p downward } 0 20 {F42R:G -> F43R:G: adjacent_5p upward } 0 21 {F43R:G -> F42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 G19R:G 0 1 G20R:G 0 2 G21R:A 0 3 G22R:C 0 4 H46R:G 0 5 H47R:U 0 6 H48R:C 0 7 H49R:C 0 [Edges] 0 {G19R:G -> G20R:G: adjacent_5p upward } 0 1 {G20R:G -> G19R:G: adjacent_3p downward } 0 2 {G19R:G -> H49R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {H49R:C -> G19R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {G20R:G -> G21R:A: adjacent_5p upward } 0 5 {G21R:A -> G20R:G: adjacent_3p downward } 0 6 {G20R:G -> H48R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {H48R:C -> G20R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {G21R:A -> G22R:C: adjacent_5p upward } 0 9 {G22R:C -> G21R:A: adjacent_3p downward } 0 10 {G21R:A -> H47R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {H47R:U -> G21R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {G22R:C -> H46R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {H46R:G -> G22R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {H46R:G -> H47R:U: adjacent_5p upward } 0 15 {H47R:U -> H46R:G: adjacent_3p downward } 0 16 {H47R:U -> H48R:C: adjacent_5p upward } 0 17 {H48R:C -> H47R:U: adjacent_3p downward } 0 18 {H48R:C -> H49R:C: adjacent_5p upward } 0 19 {H49R:C -> H48R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 G20R:G 0 1 G21R:A 0 2 G22R:C 0 3 G23R:C 0 4 H45R:A 0 5 H46R:G 0 6 H47R:U 0 7 H48R:C 0 [Edges] 0 {G20R:G -> G21R:A: adjacent_5p upward } 0 1 {G21R:A -> G20R:G: adjacent_3p downward } 0 2 {G20R:G -> H48R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {H48R:C -> G20R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {G21R:A -> G22R:C: adjacent_5p upward } 0 5 {G22R:C -> G21R:A: adjacent_3p downward } 0 6 {G21R:A -> H47R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {H47R:U -> G21R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {G22R:C -> G23R:C: adjacent_5p upward } 0 9 {G23R:C -> G22R:C: adjacent_3p downward } 0 10 {G22R:C -> H46R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {H46R:G -> G22R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {G23R:C -> H45R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 13 {H45R:A -> G23R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 14 {H45R:A -> H46R:G: adjacent_5p upward } 0 15 {H46R:G -> H45R:A: adjacent_3p downward } 0 16 {H46R:G -> H47R:U: adjacent_5p upward } 0 17 {H47R:U -> H46R:G: adjacent_3p downward } 0 18 {H47R:U -> H48R:C: adjacent_5p upward } 0 19 {H48R:C -> H47R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 G27R:C 0 1 G28R:C 0 2 G29R:A 0 3 G30R:G 0 4 H40R:C 0 5 H41R:U 0 6 H42R:G 0 7 H43R:G 0 [Edges] 0 {G27R:C -> G28R:C: adjacent_5p } 0 1 {G28R:C -> G27R:C: adjacent_3p } 0 2 {G27R:C -> H43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {H43R:G -> G27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {G28R:C -> G29R:A: adjacent_5p upward } 0 5 {G29R:A -> G28R:C: adjacent_3p downward } 0 6 {G28R:C -> H42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {H42R:G -> G28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {G29R:A -> G30R:G: adjacent_5p upward } 0 9 {G30R:G -> G29R:A: adjacent_3p downward } 0 10 {G29R:A -> H41R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {H41R:U -> G29R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {G29R:A -> H42R:G: outward } 0 13 {H42R:G -> G29R:A: outward } 0 14 {G30R:G -> H40R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {H40R:C -> G30R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {H40R:C -> H41R:U: adjacent_5p upward } 0 17 {H41R:U -> H40R:C: adjacent_3p downward } 0 18 {H41R:U -> H42R:G: adjacent_5p upward } 0 19 {H42R:G -> H41R:U: adjacent_3p downward } 0 20 {H42R:G -> H43R:G: adjacent_5p upward } 0 21 {H43R:G -> H42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 B1R:G 0 1 B2R:G 0 2 B3R:U 0 3 B4R:U 0 4 B21R:A 0 5 B22R:G 0 6 B23R:C 0 7 B24R:C 0 [Edges] 0 {B1R:G -> B2R:G: adjacent_5p upward } 0 1 {B2R:G -> B1R:G: adjacent_3p downward } 0 2 {B1R:G -> B24R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B24R:C -> B1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B2R:G -> B3R:U: adjacent_5p upward } 0 5 {B3R:U -> B2R:G: adjacent_3p downward } 0 6 {B2R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B23R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B3R:U -> B4R:U: adjacent_5p } 0 9 {B4R:U -> B3R:U: adjacent_3p } 0 10 {B3R:U -> B22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B22R:G -> B3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {B4R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B21R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B21R:A -> B22R:G: adjacent_5p upward } 0 15 {B22R:G -> B21R:A: adjacent_3p downward } 0 16 {B22R:G -> B23R:C: adjacent_5p upward } 0 17 {B23R:C -> B22R:G: adjacent_3p downward } 0 18 {B23R:C -> B24R:C: adjacent_5p upward } 0 19 {B24R:C -> B23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B2R:G 0 1 B3R:U 0 2 B4R:U 0 3 B5R:C 0 4 B20R:G 0 5 B21R:A 0 6 B22R:G 0 7 B23R:C 0 [Edges] 0 {B2R:G -> B3R:U: adjacent_5p upward } 0 1 {B3R:U -> B2R:G: adjacent_3p downward } 0 2 {B2R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B23R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B3R:U -> B4R:U: adjacent_5p } 0 5 {B4R:U -> B3R:U: adjacent_3p } 0 6 {B3R:U -> B22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B22R:G -> B3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {B4R:U -> B5R:C: adjacent_5p upward } 0 9 {B5R:C -> B4R:U: adjacent_3p downward } 0 10 {B4R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B21R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B5R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B20R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B20R:G -> B21R:A: adjacent_5p upward } 0 15 {B21R:A -> B20R:G: adjacent_3p downward } 0 16 {B21R:A -> B22R:G: adjacent_5p upward } 0 17 {B22R:G -> B21R:A: adjacent_3p downward } 0 18 {B22R:G -> B23R:C: adjacent_5p upward } 0 19 {B23R:C -> B22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B3R:U 0 1 B4R:U 0 2 B5R:C 0 3 B6R:A 0 4 B19R:U 0 5 B20R:G 0 6 B21R:A 0 7 B22R:G 0 [Edges] 0 {B3R:U -> B4R:U: adjacent_5p } 0 1 {B4R:U -> B3R:U: adjacent_3p } 0 2 {B3R:U -> B22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B22R:G -> B3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {B4R:U -> B5R:C: adjacent_5p upward } 0 5 {B5R:C -> B4R:U: adjacent_3p downward } 0 6 {B4R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B21R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B5R:C -> B6R:A: adjacent_5p upward } 0 9 {B6R:A -> B5R:C: adjacent_3p downward } 0 10 {B5R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B20R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B6R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B19R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B6R:A -> B20R:G: outward } 0 15 {B20R:G -> B6R:A: outward } 0 16 {B19R:U -> B20R:G: adjacent_5p } 0 17 {B20R:G -> B19R:U: adjacent_3p } 0 18 {B20R:G -> B21R:A: adjacent_5p upward } 0 19 {B21R:A -> B20R:G: adjacent_3p downward } 0 20 {B21R:A -> B22R:G: adjacent_5p upward } 0 21 {B22R:G -> B21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B4R:U 0 1 B5R:C 0 2 B6R:A 0 3 B7R:C 0 4 B18R:G 0 5 B19R:U 0 6 B20R:G 0 7 B21R:A 0 [Edges] 0 {B4R:U -> B5R:C: adjacent_5p upward } 0 1 {B5R:C -> B4R:U: adjacent_3p downward } 0 2 {B4R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B21R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B5R:C -> B6R:A: adjacent_5p upward } 0 5 {B6R:A -> B5R:C: adjacent_3p downward } 0 6 {B5R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B20R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B6R:A -> B7R:C: adjacent_5p upward } 0 9 {B7R:C -> B6R:A: adjacent_3p downward } 0 10 {B6R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B19R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B6R:A -> B20R:G: outward } 0 13 {B20R:G -> B6R:A: outward } 0 14 {B7R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B18R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B18R:G -> B19R:U: adjacent_5p upward } 0 17 {B19R:U -> B18R:G: adjacent_3p downward } 0 18 {B19R:U -> B20R:G: adjacent_5p } 0 19 {B20R:G -> B19R:U: adjacent_3p } 0 20 {B20R:G -> B21R:A: adjacent_5p upward } 0 21 {B21R:A -> B20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B5R:C 0 1 B6R:A 0 2 B7R:C 0 3 B8R:C 0 4 B17R:G 0 5 B18R:G 0 6 B19R:U 0 7 B20R:G 0 [Edges] 0 {B5R:C -> B6R:A: adjacent_5p upward } 0 1 {B6R:A -> B5R:C: adjacent_3p downward } 0 2 {B5R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B20R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B6R:A -> B7R:C: adjacent_5p upward } 0 5 {B7R:C -> B6R:A: adjacent_3p downward } 0 6 {B6R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B19R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B6R:A -> B20R:G: outward } 0 9 {B20R:G -> B6R:A: outward } 0 10 {B7R:C -> B8R:C: adjacent_5p } 0 11 {B8R:C -> B7R:C: adjacent_3p } 0 12 {B7R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B18R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B8R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B17R:G -> B8R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B17R:G -> B18R:G: adjacent_5p upward } 0 17 {B18R:G -> B17R:G: adjacent_3p downward } 0 18 {B18R:G -> B19R:U: adjacent_5p upward } 0 19 {B19R:U -> B18R:G: adjacent_3p downward } 0 20 {B19R:U -> B20R:G: adjacent_5p } 0 21 {B20R:G -> B19R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B6R:A 0 1 B7R:C 0 2 B8R:C 0 3 B9R:U 0 4 B16R:G 0 5 B17R:G 0 6 B18R:G 0 7 B19R:U 0 [Edges] 0 {B6R:A -> B7R:C: adjacent_5p upward } 0 1 {B7R:C -> B6R:A: adjacent_3p downward } 0 2 {B6R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B19R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B7R:C -> B8R:C: adjacent_5p } 0 5 {B8R:C -> B7R:C: adjacent_3p } 0 6 {B7R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B18R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B8R:C -> B9R:U: adjacent_5p upward } 0 9 {B9R:U -> B8R:C: adjacent_3p downward } 0 10 {B8R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B17R:G -> B8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B9R:U -> B16R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {B16R:G -> B9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {B16R:G -> B17R:G: adjacent_5p upward } 0 15 {B17R:G -> B16R:G: adjacent_3p downward } 0 16 {B17R:G -> B18R:G: adjacent_5p upward } 0 17 {B18R:G -> B17R:G: adjacent_3p downward } 0 18 {B18R:G -> B19R:U: adjacent_5p upward } 0 19 {B19R:U -> B18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B7R:C 0 1 B8R:C 0 2 B9R:U 0 3 B10R:C 0 4 B15R:C 0 5 B16R:G 0 6 B17R:G 0 7 B18R:G 0 [Edges] 0 {B7R:C -> B8R:C: adjacent_5p } 0 1 {B8R:C -> B7R:C: adjacent_3p } 0 2 {B7R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B18R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B8R:C -> B9R:U: adjacent_5p upward } 0 5 {B9R:U -> B8R:C: adjacent_3p downward } 0 6 {B8R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B17R:G -> B8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B9R:U -> B10R:C: adjacent_5p } 0 9 {B10R:C -> B9R:U: adjacent_3p } 0 10 {B9R:U -> B16R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B16R:G -> B9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {B10R:C -> B15R:C: pairing antiparallel cis one_hbond 137 Ww/Wh } 0 13 {B15R:C -> B10R:C: pairing antiparallel cis one_hbond 137 Wh/Ww } 0 14 {B10R:C -> B16R:G: outward } 0 15 {B16R:G -> B10R:C: outward } 0 16 {B15R:C -> B16R:G: adjacent_5p } 0 17 {B16R:G -> B15R:C: adjacent_3p } 0 18 {B16R:G -> B17R:G: adjacent_5p upward } 0 19 {B17R:G -> B16R:G: adjacent_3p downward } 0 20 {B17R:G -> B18R:G: adjacent_5p upward } 0 21 {B18R:G -> B17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:U 0 3 A5R:C 0 4 A20R:G 0 5 A21R:A 0 6 A22R:A 0 7 A23R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:U: adjacent_5p } 0 5 {A4R:U -> A3R:U: adjacent_3p } 0 6 {A3R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A22R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:U -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:U: adjacent_3p downward } 0 10 {A4R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A21R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A20R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A20R:G -> A21R:A: adjacent_5p upward } 0 15 {A21R:A -> A20R:G: adjacent_3p downward } 0 16 {A21R:A -> A22R:A: adjacent_5p upward } 0 17 {A22R:A -> A21R:A: adjacent_3p downward } 0 18 {A22R:A -> A23R:C: adjacent_5p upward } 0 19 {A23R:C -> A22R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:C 0 2 A8R:C 0 3 A9R:U 0 4 A15R:A 0 5 A16R:G 0 6 A17R:G 0 7 A18R:A 0 [Edges] 0 {A6R:C -> A7R:C: adjacent_5p } 0 1 {A7R:C -> A6R:C: adjacent_3p } 0 2 {A6R:C -> A18R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 3 {A18R:A -> A6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 4 {A7R:C -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:C: adjacent_3p downward } 0 6 {A7R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:C -> A9R:U: adjacent_5p } 0 9 {A9R:U -> A8R:C: adjacent_3p } 0 10 {A8R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A16R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A15R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A15R:A -> A16R:G: adjacent_5p upward } 0 15 {A16R:G -> A15R:A: adjacent_3p downward } 0 16 {A16R:G -> A17R:G: adjacent_5p } 0 17 {A17R:G -> A16R:G: adjacent_3p } 0 18 {A17R:G -> A18R:A: adjacent_5p upward } 0 19 {A18R:A -> A17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:C 0 2 A9R:U 0 3 A10R:G 0 4 A14R:A 0 5 A15R:A 0 6 A16R:G 0 7 A17R:G 0 [Edges] 0 {A7R:C -> A8R:C: adjacent_5p upward } 0 1 {A8R:C -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:C -> A9R:U: adjacent_5p } 0 5 {A9R:U -> A8R:C: adjacent_3p } 0 6 {A8R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A16R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:U -> A10R:G: adjacent_5p } 0 9 {A10R:G -> A9R:U: adjacent_3p } 0 10 {A9R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A15R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A10R:G -> A14R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A14R:A -> A10R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A14R:A -> A15R:A: adjacent_5p } 0 15 {A15R:A -> A14R:A: adjacent_3p } 0 16 {A15R:A -> A16R:G: adjacent_5p upward } 0 17 {A16R:G -> A15R:A: adjacent_3p downward } 0 18 {A16R:G -> A17R:G: adjacent_5p } 0 19 {A17R:G -> A16R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:A 0 4 A29R:G 0 5 A30R:C 0 6 A31R:G 0 7 A32R:U 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A32R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A32R:U -> A2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A31R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A30R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A31R:G: outward } 0 13 {A31R:G -> A4R:G: outward } 0 14 {A5R:A -> A29R:G: pairing antiparallel cis VIII Ww/Ww } 0 15 {A29R:G -> A5R:A: pairing antiparallel cis VIII Ww/Ww } 0 16 {A29R:G -> A30R:C: adjacent_5p upward } 0 17 {A30R:C -> A29R:G: adjacent_3p downward } 0 18 {A30R:C -> A31R:G: adjacent_5p upward } 0 19 {A31R:G -> A30R:C: adjacent_3p downward } 0 20 {A31R:G -> A32R:U: adjacent_5p upward } 0 21 {A32R:U -> A31R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:A 0 3 A6R:U 0 4 A28R:A 0 5 A29R:G 0 6 A30R:C 0 7 A31R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A31R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A30R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A31R:G: outward } 0 9 {A31R:G -> A4R:G: outward } 0 10 {A5R:A -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:A: adjacent_3p downward } 0 12 {A5R:A -> A29R:G: pairing antiparallel cis VIII Ww/Ww } 0 13 {A29R:G -> A5R:A: pairing antiparallel cis VIII Ww/Ww } 0 14 {A6R:U -> A28R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 15 {A28R:A -> A6R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 16 {A28R:A -> A29R:G: adjacent_5p upward } 0 17 {A29R:G -> A28R:A: adjacent_3p downward } 0 18 {A29R:G -> A30R:C: adjacent_5p upward } 0 19 {A30R:C -> A29R:G: adjacent_3p downward } 0 20 {A30R:C -> A31R:G: adjacent_5p upward } 0 21 {A31R:G -> A30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:U 0 2 A7R:A 0 3 A8R:C 0 4 A26R:G 0 5 A27R:C 0 6 A28R:A 0 7 A29R:G 0 [Edges] 0 {A5R:A -> A6R:U: adjacent_5p upward } 0 1 {A6R:U -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> A29R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {A29R:G -> A5R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A6R:U -> A7R:A: adjacent_5p } 0 5 {A7R:A -> A6R:U: adjacent_3p } 0 6 {A6R:U -> A28R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 7 {A28R:A -> A6R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 8 {A7R:A -> A8R:C: adjacent_5p } 0 9 {A8R:C -> A7R:A: adjacent_3p } 0 10 {A8R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A26R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A26R:G -> A27R:C: adjacent_5p } 0 13 {A27R:C -> A26R:G: adjacent_3p } 0 14 {A27R:C -> A28R:A: adjacent_5p } 0 15 {A28R:A -> A27R:C: adjacent_3p } 0 16 {A28R:A -> A29R:G: adjacent_5p upward } 0 17 {A29R:G -> A28R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A6R:U 0 1 A7R:A 0 2 A8R:C 0 3 A9R:C 0 4 A25R:G 0 5 A26R:G 0 6 A27R:C 0 7 A28R:A 0 [Edges] 0 {A6R:U -> A7R:A: adjacent_5p } 0 1 {A7R:A -> A6R:U: adjacent_3p } 0 2 {A6R:U -> A28R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 3 {A28R:A -> A6R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 4 {A7R:A -> A8R:C: adjacent_5p } 0 5 {A8R:C -> A7R:A: adjacent_3p } 0 6 {A8R:C -> A9R:C: adjacent_5p upward } 0 7 {A9R:C -> A8R:C: adjacent_3p downward } 0 8 {A8R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A26R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A9R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A25R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A25R:G -> A26R:G: adjacent_5p upward } 0 13 {A26R:G -> A25R:G: adjacent_3p downward } 0 14 {A26R:G -> A27R:C: adjacent_5p } 0 15 {A27R:C -> A26R:G: adjacent_3p } 0 16 {A27R:C -> A28R:A: adjacent_5p } 0 17 {A28R:A -> A27R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A11R:G 0 1 A12R:C 0 2 A13R:C 0 3 A14R:G 0 4 A17R:A 0 5 A18R:G 0 6 A19R:G 0 7 A20R:C 0 [Edges] 0 {A11R:G -> A12R:C: adjacent_5p upward } 0 1 {A12R:C -> A11R:G: adjacent_3p downward } 0 2 {A11R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:C -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:C: adjacent_3p downward } 0 6 {A12R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:C -> A14R:G: adjacent_5p upward } 0 9 {A14R:G -> A13R:C: adjacent_3p downward } 0 10 {A13R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A18R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:G -> A17R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {A17R:A -> A14R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {A14R:G -> A18R:G: outward } 0 15 {A18R:G -> A14R:G: outward } 0 16 {A17R:A -> A18R:G: adjacent_5p upward } 0 17 {A18R:G -> A17R:A: adjacent_3p downward } 0 18 {A18R:G -> A19R:G: adjacent_5p upward } 0 19 {A19R:G -> A18R:G: adjacent_3p downward } 0 20 {A19R:G -> A20R:C: adjacent_5p upward } 0 21 {A20R:C -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C1052R:C 0 1 C1053R:U 0 2 C1054R:G 0 3 C1055R:G 0 4 C1104R:C 0 5 C1105R:C 0 6 C1106R:A 0 7 C1107R:G 0 [Edges] 0 {C1052R:C -> C1053R:U: adjacent_5p upward } 0 1 {C1053R:U -> C1052R:C: adjacent_3p downward } 0 2 {C1052R:C -> C1107R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C1107R:G -> C1052R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C1053R:U -> C1054R:G: adjacent_5p upward } 0 5 {C1054R:G -> C1053R:U: adjacent_3p downward } 0 6 {C1053R:U -> C1106R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C1106R:A -> C1053R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C1054R:G -> C1055R:G: adjacent_5p upward } 0 9 {C1055R:G -> C1054R:G: adjacent_3p downward } 0 10 {C1054R:G -> C1105R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C1105R:C -> C1054R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C1054R:G -> C1106R:A: outward } 0 13 {C1106R:A -> C1054R:G: outward } 0 14 {C1055R:G -> C1104R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C1104R:C -> C1055R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C1104R:C -> C1105R:C: adjacent_5p upward } 0 17 {C1105R:C -> C1104R:C: adjacent_3p downward } 0 18 {C1105R:C -> C1106R:A: adjacent_5p upward } 0 19 {C1106R:A -> C1105R:C: adjacent_3p downward } 0 20 {C1106R:A -> C1107R:G: adjacent_5p upward } 0 21 {C1107R:G -> C1106R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C1053R:U 0 1 C1054R:G 0 2 C1055R:G 0 3 C1056R:G 0 4 C1103R:A 0 5 C1104R:C 0 6 C1105R:C 0 7 C1106R:A 0 [Edges] 0 {C1053R:U -> C1054R:G: adjacent_5p upward } 0 1 {C1054R:G -> C1053R:U: adjacent_3p downward } 0 2 {C1053R:U -> C1106R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C1106R:A -> C1053R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C1054R:G -> C1055R:G: adjacent_5p upward } 0 5 {C1055R:G -> C1054R:G: adjacent_3p downward } 0 6 {C1054R:G -> C1105R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C1105R:C -> C1054R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C1054R:G -> C1106R:A: outward } 0 9 {C1106R:A -> C1054R:G: outward } 0 10 {C1055R:G -> C1056R:G: adjacent_5p upward } 0 11 {C1056R:G -> C1055R:G: adjacent_3p downward } 0 12 {C1055R:G -> C1104R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C1104R:C -> C1055R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C1056R:G -> C1103R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {C1103R:A -> C1056R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {C1103R:A -> C1104R:C: adjacent_5p upward } 0 17 {C1104R:C -> C1103R:A: adjacent_3p downward } 0 18 {C1104R:C -> C1105R:C: adjacent_5p upward } 0 19 {C1105R:C -> C1104R:C: adjacent_3p downward } 0 20 {C1105R:C -> C1106R:A: adjacent_5p upward } 0 21 {C1106R:A -> C1105R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C1059R:G 0 1 C1060R:U 0 2 C1061R:U 0 3 C1062R:G 0 4 C1076R:C 0 5 C1077R:A 0 6 C1078R:U 0 7 C1079R:C 0 [Edges] 0 {C1059R:G -> C1060R:U: adjacent_5p inward } 0 1 {C1060R:U -> C1059R:G: adjacent_3p inward } 0 2 {C1059R:G -> C1079R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C1079R:C -> C1059R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C1060R:U -> C1061R:U: adjacent_5p } 0 5 {C1061R:U -> C1060R:U: adjacent_3p } 0 6 {C1061R:U -> C1062R:G: adjacent_5p } 0 7 {C1062R:G -> C1061R:U: adjacent_3p } 0 8 {C1062R:G -> C1076R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {C1076R:C -> C1062R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {C1062R:G -> C1077R:A: outward } 0 11 {C1077R:A -> C1062R:G: outward } 0 12 {C1076R:C -> C1077R:A: adjacent_5p upward } 0 13 {C1077R:A -> C1076R:C: adjacent_3p downward } 0 14 {C1077R:A -> C1078R:U: adjacent_5p upward } 0 15 {C1078R:U -> C1077R:A: adjacent_3p downward } 0 16 {C1078R:U -> C1079R:C: adjacent_5p } 0 17 {C1079R:C -> C1078R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 10 . . 4 . . . 9 . 12 . . 5 . . . 11 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 C1062R:G 0 1 C1063R:G 0 2 C1064R:C 0 3 C1065R:U 0 4 C1073R:A 0 5 C1074R:G 0 6 C1075R:C 0 7 C1076R:C 0 [Edges] 0 {C1062R:G -> C1063R:G: adjacent_5p upward } 0 1 {C1063R:G -> C1062R:G: adjacent_3p downward } 0 2 {C1062R:G -> C1076R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C1076R:C -> C1062R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C1063R:G -> C1064R:C: adjacent_5p upward } 0 5 {C1064R:C -> C1063R:G: adjacent_3p downward } 0 6 {C1063R:G -> C1075R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C1075R:C -> C1063R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C1064R:C -> C1065R:U: adjacent_5p upward } 0 9 {C1065R:U -> C1064R:C: adjacent_3p downward } 0 10 {C1064R:C -> C1074R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C1074R:G -> C1064R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C1065R:U -> C1073R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 13 {C1073R:A -> C1065R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 14 {C1073R:A -> C1074R:G: adjacent_5p upward } 0 15 {C1074R:G -> C1073R:A: adjacent_3p downward } 0 16 {C1074R:G -> C1075R:C: adjacent_5p upward } 0 17 {C1075R:C -> C1074R:G: adjacent_3p downward } 0 18 {C1075R:C -> C1076R:C: adjacent_5p upward } 0 19 {C1076R:C -> C1075R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C1090R:U 0 1 C1091R:G 0 2 C1092R:C 0 3 C1093R:G 0 4 C1098R:A 0 5 C1099R:G 0 6 C1100R:C 0 7 C1101R:U 0 [Edges] 0 {C1090R:U -> C1091R:G: adjacent_5p upward } 0 1 {C1091R:G -> C1090R:U: adjacent_3p downward } 0 2 {C1090R:U -> C1101R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {C1101R:U -> C1090R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {C1091R:G -> C1092R:C: adjacent_5p upward } 0 5 {C1092R:C -> C1091R:G: adjacent_3p downward } 0 6 {C1091R:G -> C1100R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C1100R:C -> C1091R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C1092R:C -> C1093R:G: adjacent_5p upward } 0 9 {C1093R:G -> C1092R:C: adjacent_3p downward } 0 10 {C1092R:C -> C1099R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C1099R:G -> C1092R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C1093R:G -> C1098R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {C1098R:A -> C1093R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {C1098R:A -> C1099R:G: adjacent_5p upward } 0 15 {C1099R:G -> C1098R:A: adjacent_3p downward } 0 16 {C1099R:G -> C1100R:C: adjacent_5p upward } 0 17 {C1100R:C -> C1099R:G: adjacent_3p downward } 0 18 {C1100R:C -> C1101R:U: adjacent_5p upward } 0 19 {C1101R:U -> C1100R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 C9R:A 0 1 C10R:A 0 2 C11R:A 0 3 C12R:C 0 4 C19R:G 0 5 C20R:U 0 6 C21R:U 0 7 C22R:G 0 [Edges] 0 {C9R:A -> C10R:A: adjacent_5p upward } 0 1 {C10R:A -> C9R:A: adjacent_3p downward } 0 2 {C9R:A -> C22R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {C22R:G -> C9R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {C10R:A -> C11R:A: adjacent_5p upward } 0 5 {C11R:A -> C10R:A: adjacent_3p downward } 0 6 {C10R:A -> C21R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C21R:U -> C10R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C11R:A -> C12R:C: adjacent_5p upward } 0 9 {C12R:C -> C11R:A: adjacent_3p downward } 0 10 {C11R:A -> C20R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C20R:U -> C11R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C12R:C -> C19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C19R:G -> C12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C19R:G -> C20R:U: adjacent_5p upward } 0 15 {C20R:U -> C19R:G: adjacent_3p downward } 0 16 {C20R:U -> C21R:U: adjacent_5p upward } 0 17 {C21R:U -> C20R:U: adjacent_3p downward } 0 18 {C21R:U -> C22R:G: adjacent_5p upward } 0 19 {C22R:G -> C21R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C10R:A 0 1 C11R:A 0 2 C12R:C 0 3 C13R:U 0 4 C18R:G 0 5 C19R:G 0 6 C20R:U 0 7 C21R:U 0 [Edges] 0 {C10R:A -> C11R:A: adjacent_5p upward } 0 1 {C11R:A -> C10R:A: adjacent_3p downward } 0 2 {C10R:A -> C21R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C21R:U -> C10R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C11R:A -> C12R:C: adjacent_5p upward } 0 5 {C12R:C -> C11R:A: adjacent_3p downward } 0 6 {C11R:A -> C20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C20R:U -> C11R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C12R:C -> C13R:U: adjacent_5p upward } 0 9 {C13R:U -> C12R:C: adjacent_3p downward } 0 10 {C12R:C -> C19R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C19R:G -> C12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C13R:U -> C18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {C18R:G -> C13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {C18R:G -> C19R:G: adjacent_5p upward } 0 15 {C19R:G -> C18R:G: adjacent_3p downward } 0 16 {C19R:G -> C20R:U: adjacent_5p upward } 0 17 {C20R:U -> C19R:G: adjacent_3p downward } 0 18 {C20R:U -> C21R:U: adjacent_5p upward } 0 19 {C21R:U -> C20R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C11R:A 0 1 C12R:C 0 2 C13R:U 0 3 C14R:G 0 4 C17R:A 0 5 C18R:G 0 6 C19R:G 0 7 C20R:U 0 [Edges] 0 {C11R:A -> C12R:C: adjacent_5p upward } 0 1 {C12R:C -> C11R:A: adjacent_3p downward } 0 2 {C11R:A -> C20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C20R:U -> C11R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C12R:C -> C13R:U: adjacent_5p upward } 0 5 {C13R:U -> C12R:C: adjacent_3p downward } 0 6 {C12R:C -> C19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C19R:G -> C12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C13R:U -> C14R:G: adjacent_5p upward } 0 9 {C14R:G -> C13R:U: adjacent_3p downward } 0 10 {C13R:U -> C18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {C18R:G -> C13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {C14R:G -> C17R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {C17R:A -> C14R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {C17R:A -> C18R:G: adjacent_5p upward } 0 15 {C18R:G -> C17R:A: adjacent_3p downward } 0 16 {C18R:G -> C19R:G: adjacent_5p upward } 0 17 {C19R:G -> C18R:G: adjacent_3p downward } 0 18 {C19R:G -> C20R:U: adjacent_5p upward } 0 19 {C20R:U -> C19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D2R:A 0 1 D3R:U 0 2 D4R:A 0 3 D5R:C 0 4 D25R:G 0 5 D26R:U 0 6 D27R:A 0 7 D28R:U 0 [Edges] 0 {D2R:A -> D3R:U: adjacent_5p upward } 0 1 {D3R:U -> D2R:A: adjacent_3p downward } 0 2 {D2R:A -> D28R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D28R:U -> D2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {D3R:U -> D4R:A: adjacent_5p upward } 0 5 {D4R:A -> D3R:U: adjacent_3p downward } 0 6 {D3R:U -> D27R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D27R:A -> D3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D4R:A -> D5R:C: adjacent_5p upward } 0 9 {D5R:C -> D4R:A: adjacent_3p downward } 0 10 {D4R:A -> D26R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D26R:U -> D4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {D4R:A -> D27R:A: outward } 0 13 {D27R:A -> D4R:A: outward } 0 14 {D5R:C -> D25R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D25R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D25R:G -> D26R:U: adjacent_5p upward } 0 17 {D26R:U -> D25R:G: adjacent_3p downward } 0 18 {D26R:U -> D27R:A: adjacent_5p upward } 0 19 {D27R:A -> D26R:U: adjacent_3p downward } 0 20 {D27R:A -> D28R:U: adjacent_5p upward } 0 21 {D28R:U -> D27R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D3R:U 0 1 D4R:A 0 2 D5R:C 0 3 D6R:U 0 4 D24R:C 0 5 D25R:G 0 6 D26R:U 0 7 D27R:A 0 [Edges] 0 {D3R:U -> D4R:A: adjacent_5p upward } 0 1 {D4R:A -> D3R:U: adjacent_3p downward } 0 2 {D3R:U -> D27R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D27R:A -> D3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D4R:A -> D5R:C: adjacent_5p upward } 0 5 {D5R:C -> D4R:A: adjacent_3p downward } 0 6 {D4R:A -> D26R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D26R:U -> D4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D4R:A -> D27R:A: outward } 0 9 {D27R:A -> D4R:A: outward } 0 10 {D5R:C -> D6R:U: adjacent_5p upward } 0 11 {D6R:U -> D5R:C: adjacent_3p downward } 0 12 {D5R:C -> D25R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D25R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D6R:U -> D24R:C: pairing antiparallel trans one_hbond Ws/Hw } 0 15 {D24R:C -> D6R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 16 {D24R:C -> D25R:G: adjacent_5p upward } 0 17 {D25R:G -> D24R:C: adjacent_3p downward } 0 18 {D25R:G -> D26R:U: adjacent_5p upward } 0 19 {D26R:U -> D25R:G: adjacent_3p downward } 0 20 {D26R:U -> D27R:A: adjacent_5p upward } 0 21 {D27R:A -> D26R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D9R:A 0 1 D10R:A 0 2 D11R:A 0 3 D12R:C 0 4 D19R:G 0 5 D20R:U 0 6 D21R:U 0 7 D22R:G 0 [Edges] 0 {D9R:A -> D10R:A: adjacent_5p upward } 0 1 {D10R:A -> D9R:A: adjacent_3p downward } 0 2 {D9R:A -> D22R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {D22R:G -> D9R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {D10R:A -> D11R:A: adjacent_5p upward } 0 5 {D11R:A -> D10R:A: adjacent_3p downward } 0 6 {D10R:A -> D21R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D21R:U -> D10R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D11R:A -> D12R:C: adjacent_5p upward } 0 9 {D12R:C -> D11R:A: adjacent_3p downward } 0 10 {D11R:A -> D20R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D20R:U -> D11R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {D12R:C -> D19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D19R:G -> D12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D19R:G -> D20R:U: adjacent_5p upward } 0 15 {D20R:U -> D19R:G: adjacent_3p downward } 0 16 {D20R:U -> D21R:U: adjacent_5p } 0 17 {D21R:U -> D20R:U: adjacent_3p } 0 18 {D21R:U -> D22R:G: adjacent_5p upward } 0 19 {D22R:G -> D21R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D10R:A 0 1 D11R:A 0 2 D12R:C 0 3 D13R:U 0 4 D18R:G 0 5 D19R:G 0 6 D20R:U 0 7 D21R:U 0 [Edges] 0 {D10R:A -> D11R:A: adjacent_5p upward } 0 1 {D11R:A -> D10R:A: adjacent_3p downward } 0 2 {D10R:A -> D21R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D21R:U -> D10R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {D11R:A -> D12R:C: adjacent_5p upward } 0 5 {D12R:C -> D11R:A: adjacent_3p downward } 0 6 {D11R:A -> D20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D20R:U -> D11R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D12R:C -> D13R:U: adjacent_5p upward } 0 9 {D13R:U -> D12R:C: adjacent_3p downward } 0 10 {D12R:C -> D19R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D19R:G -> D12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D13R:U -> D18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {D18R:G -> D13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {D18R:G -> D19R:G: adjacent_5p upward } 0 15 {D19R:G -> D18R:G: adjacent_3p downward } 0 16 {D19R:G -> D20R:U: adjacent_5p upward } 0 17 {D20R:U -> D19R:G: adjacent_3p downward } 0 18 {D20R:U -> D21R:U: adjacent_5p } 0 19 {D21R:U -> D20R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:A 0 1 A3R:G 0 2 A4R:A 0 3 A5R:G 0 4 A11R:C 0 5 A12R:U 0 6 A13R:C 0 7 A14R:U 0 [Edges] 0 {A2R:A -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:A: adjacent_3p downward } 0 2 {A2R:A -> A14R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A14R:U -> A2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A13R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A12R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A11R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A11R:C -> A12R:U: adjacent_5p upward } 0 15 {A12R:U -> A11R:C: adjacent_3p downward } 0 16 {A12R:U -> A13R:C: adjacent_5p upward } 0 17 {A13R:C -> A12R:U: adjacent_3p downward } 0 18 {A13R:C -> A14R:U: adjacent_5p upward } 0 19 {A14R:U -> A13R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:A 0 2 A5R:G 0 3 A6R:U 0 4 A10R:G 0 5 A11R:C 0 6 A12R:U 0 7 A13R:C 0 [Edges] 0 {A3R:G -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A13R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A12R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:G -> A6R:U: adjacent_5p } 0 9 {A6R:U -> A5R:G: adjacent_3p } 0 10 {A5R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A11R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A10R:G -> A6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A10R:G -> A11R:C: adjacent_5p upward } 0 15 {A11R:C -> A10R:G: adjacent_3p downward } 0 16 {A11R:C -> A12R:U: adjacent_5p upward } 0 17 {A12R:U -> A11R:C: adjacent_3p downward } 0 18 {A12R:U -> A13R:C: adjacent_5p upward } 0 19 {A13R:C -> A12R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:C 0 2 A7R:G 0 3 A8R:C 0 4 A13R:G 0 5 A14R:C 0 6 A15R:G 0 7 A16R:A 0 [Edges] 0 {A5R:G -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> A16R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A16R:A -> A5R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A6R:C -> A7R:G: adjacent_5p } 0 5 {A7R:G -> A6R:C: adjacent_3p } 0 6 {A6R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A15R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:G -> A8R:C: adjacent_5p upward } 0 9 {A8R:C -> A7R:G: adjacent_3p downward } 0 10 {A7R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A14R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:G -> A15R:G: outward } 0 13 {A15R:G -> A7R:G: outward } 0 14 {A8R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A13R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A13R:G -> A14R:C: adjacent_5p upward } 0 17 {A14R:C -> A13R:G: adjacent_3p downward } 0 18 {A14R:C -> A15R:G: adjacent_5p } 0 19 {A15R:G -> A14R:C: adjacent_3p } 0 20 {A15R:G -> A16R:A: adjacent_5p upward } 0 21 {A16R:A -> A15R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:G 0 2 A8R:C 0 3 A9R:U 0 4 A12R:G 0 5 A13R:G 0 6 A14R:C 0 7 A15R:G 0 [Edges] 0 {A6R:C -> A7R:G: adjacent_5p } 0 1 {A7R:G -> A6R:C: adjacent_3p } 0 2 {A6R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A15R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:G -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:G: adjacent_3p downward } 0 6 {A7R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A14R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:G -> A15R:G: outward } 0 9 {A15R:G -> A7R:G: outward } 0 10 {A8R:C -> A9R:U: adjacent_5p upward } 0 11 {A9R:U -> A8R:C: adjacent_3p downward } 0 12 {A8R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A13R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A9R:U -> A12R:G: pairing parallel trans one_hbond 87 Ws/Ws } 0 15 {A12R:G -> A9R:U: pairing parallel trans one_hbond 87 Ws/Ws } 0 16 {A12R:G -> A13R:G: adjacent_5p } 0 17 {A13R:G -> A12R:G: adjacent_3p } 0 18 {A13R:G -> A14R:C: adjacent_5p upward } 0 19 {A14R:C -> A13R:G: adjacent_3p downward } 0 20 {A14R:C -> A15R:G: adjacent_5p } 0 21 {A15R:G -> A14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:A 0 1 A3R:G 0 2 A4R:C 0 3 A5R:G 0 4 A19R:A 0 5 A20R:G 0 6 A21R:C 0 7 A22R:U 0 [Edges] 0 {A2R:A -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:A: adjacent_3p downward } 0 2 {A2R:A -> A22R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A22R:U -> A2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A19R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A19R:A -> A5R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A19R:A -> A20R:G: adjacent_5p upward } 0 15 {A20R:G -> A19R:A: adjacent_3p downward } 0 16 {A20R:G -> A21R:C: adjacent_5p upward } 0 17 {A21R:C -> A20R:G: adjacent_3p downward } 0 18 {A21R:C -> A22R:U: adjacent_5p } 0 19 {A22R:U -> A21R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:A 0 2 A10R:C 0 3 A11R:G 0 4 A14R:A 0 5 A15R:G 0 6 A16R:U 0 7 A17R:C 0 [Edges] 0 {A8R:G -> A9R:A: adjacent_5p upward } 0 1 {A9R:A -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:A -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:A: adjacent_3p downward } 0 6 {A9R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A16R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A10R:C -> A11R:G: adjacent_5p } 0 9 {A11R:G -> A10R:C: adjacent_3p } 0 10 {A10R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A15R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A11R:G -> A14R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A14R:A -> A11R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A14R:A -> A15R:G: adjacent_5p upward } 0 15 {A15R:G -> A14R:A: adjacent_3p downward } 0 16 {A15R:G -> A16R:U: adjacent_5p upward } 0 17 {A16R:U -> A15R:G: adjacent_3p downward } 0 18 {A16R:U -> A17R:C: adjacent_5p upward } 0 19 {A17R:C -> A16R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:U 0 3 A5R:G 0 4 A51R:C 0 5 A52R:A 0 6 A53R:G 0 7 A54R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A54R:C: pairing antiparallel cis Ww/Ww } 0 3 {A54R:C -> A2R:G: pairing antiparallel cis Ww/Ww } 0 4 {A3R:C -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A53R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A53R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:U -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:U: adjacent_3p downward } 0 10 {A4R:U -> A52R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A52R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:G -> A51R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A51R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A5R:G -> A52R:A: outward } 0 15 {A52R:A -> A5R:G: outward } 0 16 {A51R:C -> A52R:A: adjacent_5p upward } 0 17 {A52R:A -> A51R:C: adjacent_3p downward } 0 18 {A52R:A -> A53R:G: adjacent_5p upward } 0 19 {A53R:G -> A52R:A: adjacent_3p downward } 0 20 {A53R:G -> A54R:C: adjacent_5p upward } 0 21 {A54R:C -> A53R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:A 0 2 A9R:G 0 3 A10R:G 0 4 A47R:C 0 5 A48R:C 0 6 A49R:U 0 7 A50R:C 0 [Edges] 0 {A7R:G -> A8R:A: adjacent_5p upward } 0 1 {A8R:A -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> A50R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A50R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:A -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:A: adjacent_3p downward } 0 6 {A8R:A -> A49R:U: pairing antiparallel cis XX Ww/Ws } 0 7 {A49R:U -> A8R:A: pairing antiparallel cis XX Ws/Ww } 0 8 {A9R:G -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> A48R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A48R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:G -> A47R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A47R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A47R:C -> A48R:C: adjacent_5p upward } 0 15 {A48R:C -> A47R:C: adjacent_3p downward } 0 16 {A48R:C -> A49R:U: adjacent_5p upward } 0 17 {A49R:U -> A48R:C: adjacent_3p downward } 0 18 {A49R:U -> A50R:C: adjacent_5p upward } 0 19 {A50R:C -> A49R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A16R:C 0 1 A17R:U 0 2 A18R:G 0 3 A19R:U 0 4 A43R:G 0 5 A44R:C 0 6 A45R:A 0 7 A46R:G 0 [Edges] 0 {A16R:C -> A17R:U: adjacent_5p upward } 0 1 {A17R:U -> A16R:C: adjacent_3p downward } 0 2 {A16R:C -> A46R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A46R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A17R:U -> A18R:G: adjacent_5p upward } 0 5 {A18R:G -> A17R:U: adjacent_3p downward } 0 6 {A17R:U -> A45R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A45R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A18R:G -> A19R:U: adjacent_5p upward } 0 9 {A19R:U -> A18R:G: adjacent_3p downward } 0 10 {A18R:G -> A44R:C: pairing antiparallel cis Ww/Ww } 0 11 {A44R:C -> A18R:G: pairing antiparallel cis Ww/Ww } 0 12 {A18R:G -> A45R:A: outward } 0 13 {A45R:A -> A18R:G: outward } 0 14 {A19R:U -> A43R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A43R:G -> A19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A43R:G -> A44R:C: adjacent_5p upward } 0 17 {A44R:C -> A43R:G: adjacent_3p downward } 0 18 {A44R:C -> A45R:A: adjacent_5p upward } 0 19 {A45R:A -> A44R:C: adjacent_3p downward } 0 20 {A45R:A -> A46R:G: adjacent_5p upward } 0 21 {A46R:G -> A45R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A20R:C 0 1 A21R:U 0 2 A22R:U 0 3 A23R:C 0 4 A38R:G 0 5 A39R:U 0 6 A40R:C 0 7 A41R:G 0 [Edges] 0 {A20R:C -> A21R:U: adjacent_5p upward } 0 1 {A21R:U -> A20R:C: adjacent_3p downward } 0 2 {A20R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A41R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A21R:U -> A22R:U: adjacent_5p } 0 5 {A22R:U -> A21R:U: adjacent_3p } 0 6 {A21R:U -> A40R:C: pairing antiparallel cis XVIII Ww/Ww } 0 7 {A40R:C -> A21R:U: pairing antiparallel cis XVIII Ww/Ww } 0 8 {A22R:U -> A23R:C: adjacent_5p upward } 0 9 {A23R:C -> A22R:U: adjacent_3p downward } 0 10 {A23R:C -> A38R:G: pairing antiparallel cis Ww/Ww } 0 11 {A38R:G -> A23R:C: pairing antiparallel cis Ww/Ww } 0 12 {A38R:G -> A39R:U: adjacent_5p upward } 0 13 {A39R:U -> A38R:G: adjacent_3p downward } 0 14 {A39R:U -> A40R:C: adjacent_5p upward } 0 15 {A40R:C -> A39R:U: adjacent_3p downward } 0 16 {A40R:C -> A41R:G: adjacent_5p } 0 17 {A41R:G -> A40R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A21R:U 0 1 A22R:U 0 2 A23R:C 0 3 A24R:A 0 4 A37R:U 0 5 A38R:G 0 6 A39R:U 0 7 A40R:C 0 [Edges] 0 {A21R:U -> A22R:U: adjacent_5p } 0 1 {A22R:U -> A21R:U: adjacent_3p } 0 2 {A21R:U -> A40R:C: pairing antiparallel cis XVIII Ww/Ww } 0 3 {A40R:C -> A21R:U: pairing antiparallel cis XVIII Ww/Ww } 0 4 {A22R:U -> A23R:C: adjacent_5p upward } 0 5 {A23R:C -> A22R:U: adjacent_3p downward } 0 6 {A23R:C -> A24R:A: adjacent_5p upward } 0 7 {A24R:A -> A23R:C: adjacent_3p downward } 0 8 {A23R:C -> A38R:G: pairing antiparallel cis Ww/Ww } 0 9 {A38R:G -> A23R:C: pairing antiparallel cis Ww/Ww } 0 10 {A24R:A -> A37R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A37R:U -> A24R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A37R:U -> A38R:G: adjacent_5p upward } 0 13 {A38R:G -> A37R:U: adjacent_3p downward } 0 14 {A38R:G -> A39R:U: adjacent_5p upward } 0 15 {A39R:U -> A38R:G: adjacent_3p downward } 0 16 {A39R:U -> A40R:C: adjacent_5p upward } 0 17 {A40R:C -> A39R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A24R:A 0 1 A25R:C 0 2 A26R:G 0 3 A27R:C 0 4 A34R:G 0 5 A35R:A 0 6 A36R:G 0 7 A37R:U 0 [Edges] 0 {A24R:A -> A25R:C: adjacent_5p upward } 0 1 {A25R:C -> A24R:A: adjacent_3p downward } 0 2 {A24R:A -> A37R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A37R:U -> A24R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A25R:C -> A26R:G: adjacent_5p inward } 0 5 {A26R:G -> A25R:C: adjacent_3p inward } 0 6 {A25R:C -> A36R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A36R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A26R:G -> A27R:C: adjacent_5p } 0 9 {A27R:C -> A26R:G: adjacent_3p } 0 10 {A26R:G -> A36R:G: upward } 0 11 {A36R:G -> A26R:G: downward } 0 12 {A27R:C -> A34R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A34R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A34R:G -> A35R:A: adjacent_5p upward } 0 15 {A35R:A -> A34R:G: adjacent_3p downward } 0 16 {A35R:A -> A36R:G: adjacent_5p upward } 0 17 {A36R:G -> A35R:A: adjacent_3p downward } 0 18 {A36R:G -> A37R:U: adjacent_5p upward } 0 19 {A37R:U -> A36R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . 10 . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 11 . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A25R:C 0 1 A26R:G 0 2 A27R:C 0 3 A28R:C 0 4 A33R:G 0 5 A34R:G 0 6 A35R:A 0 7 A36R:G 0 [Edges] 0 {A25R:C -> A26R:G: adjacent_5p inward } 0 1 {A26R:G -> A25R:C: adjacent_3p inward } 0 2 {A25R:C -> A36R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A36R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A26R:G -> A27R:C: adjacent_5p } 0 5 {A27R:C -> A26R:G: adjacent_3p } 0 6 {A26R:G -> A36R:G: upward } 0 7 {A36R:G -> A26R:G: downward } 0 8 {A27R:C -> A28R:C: adjacent_5p upward } 0 9 {A28R:C -> A27R:C: adjacent_3p downward } 0 10 {A27R:C -> A34R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A34R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A28R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A33R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A33R:G -> A34R:G: adjacent_5p upward } 0 15 {A34R:G -> A33R:G: adjacent_3p downward } 0 16 {A34R:G -> A35R:A: adjacent_5p upward } 0 17 {A35R:A -> A34R:G: adjacent_3p downward } 0 18 {A35R:A -> A36R:G: adjacent_5p upward } 0 19 {A36R:G -> A35R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . 6 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . . . . . 17 . 18 7 3 7 . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:A 0 3 A5R:G 0 4 A30R:A 0 5 A31R:U 0 6 A32R:G 0 7 A33R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A33R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A33R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:A: adjacent_5p } 0 5 {A4R:A -> A3R:C: adjacent_3p } 0 6 {A3R:C -> A32R:G: pairing antiparallel cis Ww/Ww } 0 7 {A32R:G -> A3R:C: pairing antiparallel cis Ww/Ww } 0 8 {A4R:A -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A31R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {A31R:U -> A4R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {A4R:A -> A32R:G: outward } 0 13 {A32R:G -> A4R:A: outward } 0 14 {A5R:G -> A30R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {A30R:A -> A5R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {A30R:A -> A31R:U: adjacent_5p upward } 0 17 {A31R:U -> A30R:A: adjacent_3p downward } 0 18 {A31R:U -> A32R:G: adjacent_5p } 0 19 {A32R:G -> A31R:U: adjacent_3p } 0 20 {A32R:G -> A33R:C: adjacent_5p upward } 0 21 {A33R:C -> A32R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:A 0 2 A5R:G 0 3 A6R:A 0 4 A29R:U 0 5 A30R:A 0 6 A31R:U 0 7 A32R:G 0 [Edges] 0 {A3R:C -> A4R:A: adjacent_5p } 0 1 {A4R:A -> A3R:C: adjacent_3p } 0 2 {A3R:C -> A32R:G: pairing antiparallel cis Ww/Ww } 0 3 {A32R:G -> A3R:C: pairing antiparallel cis Ww/Ww } 0 4 {A4R:A -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A31R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {A31R:U -> A4R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {A4R:A -> A32R:G: outward } 0 9 {A32R:G -> A4R:A: outward } 0 10 {A5R:G -> A6R:A: adjacent_5p } 0 11 {A6R:A -> A5R:G: adjacent_3p } 0 12 {A5R:G -> A30R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A30R:A -> A5R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A6R:A -> A29R:U: pairing antiparallel trans XXIV Hh/Ww } 0 15 {A29R:U -> A6R:A: pairing antiparallel trans XXIV Ww/Hh } 0 16 {A6R:A -> A30R:A: outward } 0 17 {A30R:A -> A6R:A: outward } 0 18 {A29R:U -> A30R:A: adjacent_5p } 0 19 {A30R:A -> A29R:U: adjacent_3p } 0 20 {A30R:A -> A31R:U: adjacent_5p upward } 0 21 {A31R:U -> A30R:A: adjacent_3p downward } 0 22 {A31R:U -> A32R:G: adjacent_5p } 0 23 {A32R:G -> A31R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A7R:A 0 1 A8R:A 0 2 A9R:G 0 3 A10R:C 0 4 A24R:G 0 5 A25R:U 0 6 A26R:U 0 7 A27R:A 0 [Edges] 0 {A7R:A -> A8R:A: adjacent_5p upward } 0 1 {A8R:A -> A7R:A: adjacent_3p downward } 0 2 {A7R:A -> A27R:A: pairing parallel trans II Hh/Hh } 0 3 {A27R:A -> A7R:A: pairing parallel trans II Hh/Hh } 0 4 {A8R:A -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:A: adjacent_3p downward } 0 6 {A8R:A -> A26R:U: pairing antiparallel trans one_hbond 45 Hw/Ss } 0 7 {A26R:U -> A8R:A: pairing antiparallel trans one_hbond 45 Ss/Hw } 0 8 {A9R:G -> A10R:C: adjacent_5p upward } 0 9 {A10R:C -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> A25R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A25R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A10R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A24R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A24R:G -> A25R:U: adjacent_5p upward } 0 15 {A25R:U -> A24R:G: adjacent_3p downward } 0 16 {A25R:U -> A26R:U: adjacent_5p upward } 0 17 {A26R:U -> A25R:U: adjacent_3p downward } 0 18 {A26R:U -> A27R:A: adjacent_5p inward } 0 19 {A27R:A -> A26R:U: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:A 0 1 A9R:G 0 2 A10R:C 0 3 A11R:G 0 4 A23R:C 0 5 A24R:G 0 6 A25R:U 0 7 A26R:U 0 [Edges] 0 {A8R:A -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:A: adjacent_3p downward } 0 2 {A8R:A -> A26R:U: pairing antiparallel trans one_hbond 45 Hw/Ss } 0 3 {A26R:U -> A8R:A: pairing antiparallel trans one_hbond 45 Ss/Hw } 0 4 {A9R:G -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> A25R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A25R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A10R:C -> A11R:G: adjacent_5p upward } 0 9 {A11R:G -> A10R:C: adjacent_3p downward } 0 10 {A10R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A24R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A11R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A23R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A23R:C -> A24R:G: adjacent_5p upward } 0 15 {A24R:G -> A23R:C: adjacent_3p downward } 0 16 {A24R:G -> A25R:U: adjacent_5p upward } 0 17 {A25R:U -> A24R:G: adjacent_3p downward } 0 18 {A25R:U -> A26R:U: adjacent_5p upward } 0 19 {A26R:U -> A25R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:C 0 2 A11R:G 0 3 A12R:U 0 4 A22R:G 0 5 A23R:C 0 6 A24R:G 0 7 A25R:U 0 [Edges] 0 {A9R:G -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A25R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A25R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A10R:C -> A11R:G: adjacent_5p upward } 0 5 {A11R:G -> A10R:C: adjacent_3p downward } 0 6 {A10R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A24R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:G -> A12R:U: adjacent_5p upward } 0 9 {A12R:U -> A11R:G: adjacent_3p downward } 0 10 {A11R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A23R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:U -> A22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A22R:G -> A12R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A22R:G -> A23R:C: adjacent_5p upward } 0 15 {A23R:C -> A22R:G: adjacent_3p downward } 0 16 {A23R:C -> A24R:G: adjacent_5p upward } 0 17 {A24R:G -> A23R:C: adjacent_3p downward } 0 18 {A24R:G -> A25R:U: adjacent_5p upward } 0 19 {A25R:U -> A24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:C 0 1 A11R:G 0 2 A12R:U 0 3 A13R:C 0 4 A21R:G 0 5 A22R:G 0 6 A23R:C 0 7 A24R:G 0 [Edges] 0 {A10R:C -> A11R:G: adjacent_5p upward } 0 1 {A11R:G -> A10R:C: adjacent_3p downward } 0 2 {A10R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:G -> A12R:U: adjacent_5p upward } 0 5 {A12R:U -> A11R:G: adjacent_3p downward } 0 6 {A11R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A23R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:U -> A13R:C: adjacent_5p upward } 0 9 {A13R:C -> A12R:U: adjacent_3p downward } 0 10 {A12R:U -> A22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A22R:G -> A12R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A13R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A21R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A21R:G -> A22R:G: adjacent_5p upward } 0 15 {A22R:G -> A21R:G: adjacent_3p downward } 0 16 {A22R:G -> A23R:C: adjacent_5p upward } 0 17 {A23R:C -> A22R:G: adjacent_3p downward } 0 18 {A23R:C -> A24R:G: adjacent_5p upward } 0 19 {A24R:G -> A23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:U 0 3 A5R:G 0 4 A73R:C 0 5 A74R:A 0 6 A75R:G 0 7 A76R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A76R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A76R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A75R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A75R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:U -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:U: adjacent_3p downward } 0 10 {A4R:U -> A74R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A74R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:G -> A73R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A73R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A5R:G -> A74R:A: outward } 0 15 {A74R:A -> A5R:G: outward } 0 16 {A73R:C -> A74R:A: adjacent_5p upward } 0 17 {A74R:A -> A73R:C: adjacent_3p downward } 0 18 {A74R:A -> A75R:G: adjacent_5p upward } 0 19 {A75R:G -> A74R:A: adjacent_3p downward } 0 20 {A75R:G -> A76R:C: adjacent_5p upward } 0 21 {A76R:C -> A75R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:A 0 2 A9R:G 0 3 A10R:G 0 4 A69R:C 0 5 A70R:C 0 6 A71R:U 0 7 A72R:C 0 [Edges] 0 {A7R:G -> A8R:A: adjacent_5p upward } 0 1 {A8R:A -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> A72R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A72R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:A -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:A: adjacent_3p downward } 0 6 {A8R:A -> A71R:U: pairing antiparallel cis Ww/Ws } 0 7 {A71R:U -> A8R:A: pairing antiparallel cis Ws/Ww } 0 8 {A9R:G -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> A69R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {A69R:C -> A9R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {A9R:G -> A70R:C: pairing antiparallel cis Ww/Ww } 0 13 {A70R:C -> A9R:G: pairing antiparallel cis Ww/Ww } 0 14 {A10R:G -> A69R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A69R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A69R:C -> A70R:C: adjacent_5p upward } 0 17 {A70R:C -> A69R:C: adjacent_3p downward } 0 18 {A70R:C -> A71R:U: adjacent_5p upward } 0 19 {A71R:U -> A70R:C: adjacent_3p downward } 0 20 {A71R:U -> A72R:C: adjacent_5p upward } 0 21 {A72R:C -> A71R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 12 . . 3 . . 9 . 14 . . . 4 . . 11 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A16R:C 0 1 A17R:U 0 2 A18R:G 0 3 A19R:U 0 4 A65R:G 0 5 A66R:C 0 6 A67R:A 0 7 A68R:G 0 [Edges] 0 {A16R:C -> A17R:U: adjacent_5p upward } 0 1 {A17R:U -> A16R:C: adjacent_3p downward } 0 2 {A16R:C -> A68R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A68R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A17R:U -> A18R:G: adjacent_5p upward } 0 5 {A18R:G -> A17R:U: adjacent_3p downward } 0 6 {A17R:U -> A67R:A: pairing antiparallel cis XX Ws/Ww } 0 7 {A67R:A -> A17R:U: pairing antiparallel cis XX Ww/Ws } 0 8 {A18R:G -> A19R:U: adjacent_5p upward } 0 9 {A19R:U -> A18R:G: adjacent_3p downward } 0 10 {A18R:G -> A66R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A66R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A18R:G -> A67R:A: outward } 0 13 {A67R:A -> A18R:G: outward } 0 14 {A19R:U -> A65R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A65R:G -> A19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A65R:G -> A66R:C: adjacent_5p upward } 0 17 {A66R:C -> A65R:G: adjacent_3p downward } 0 18 {A66R:C -> A67R:A: adjacent_5p upward } 0 19 {A67R:A -> A66R:C: adjacent_3p downward } 0 20 {A67R:A -> A68R:G: adjacent_5p upward } 0 21 {A68R:G -> A67R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A20R:C 0 1 A21R:U 0 2 A22R:U 0 3 A23R:C 0 4 A60R:G 0 5 A61R:U 0 6 A62R:C 0 7 A63R:G 0 [Edges] 0 {A20R:C -> A21R:U: adjacent_5p upward } 0 1 {A21R:U -> A20R:C: adjacent_3p downward } 0 2 {A20R:C -> A63R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A63R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A21R:U -> A22R:U: adjacent_5p upward } 0 5 {A22R:U -> A21R:U: adjacent_3p downward } 0 6 {A21R:U -> A62R:C: pairing antiparallel cis XVIII Ww/Ww } 0 7 {A62R:C -> A21R:U: pairing antiparallel cis XVIII Ww/Ww } 0 8 {A22R:U -> A23R:C: adjacent_5p upward } 0 9 {A23R:C -> A22R:U: adjacent_3p downward } 0 10 {A23R:C -> A60R:G: pairing antiparallel cis Ww/Ww } 0 11 {A60R:G -> A23R:C: pairing antiparallel cis Ww/Ww } 0 12 {A60R:G -> A61R:U: adjacent_5p upward } 0 13 {A61R:U -> A60R:G: adjacent_3p downward } 0 14 {A61R:U -> A62R:C: adjacent_5p upward } 0 15 {A62R:C -> A61R:U: adjacent_3p downward } 0 16 {A62R:C -> A63R:G: adjacent_5p upward } 0 17 {A63R:G -> A62R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A21R:U 0 1 A22R:U 0 2 A23R:C 0 3 A24R:A 0 4 A59R:U 0 5 A60R:G 0 6 A61R:U 0 7 A62R:C 0 [Edges] 0 {A21R:U -> A22R:U: adjacent_5p upward } 0 1 {A22R:U -> A21R:U: adjacent_3p downward } 0 2 {A21R:U -> A62R:C: pairing antiparallel cis XVIII Ww/Ww } 0 3 {A62R:C -> A21R:U: pairing antiparallel cis XVIII Ww/Ww } 0 4 {A22R:U -> A23R:C: adjacent_5p upward } 0 5 {A23R:C -> A22R:U: adjacent_3p downward } 0 6 {A23R:C -> A24R:A: adjacent_5p upward } 0 7 {A24R:A -> A23R:C: adjacent_3p downward } 0 8 {A23R:C -> A60R:G: pairing antiparallel cis Ww/Ww } 0 9 {A60R:G -> A23R:C: pairing antiparallel cis Ww/Ww } 0 10 {A24R:A -> A59R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A59R:U -> A24R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A59R:U -> A60R:G: adjacent_5p upward } 0 13 {A60R:G -> A59R:U: adjacent_3p downward } 0 14 {A60R:G -> A61R:U: adjacent_5p upward } 0 15 {A61R:U -> A60R:G: adjacent_3p downward } 0 16 {A61R:U -> A62R:C: adjacent_5p upward } 0 17 {A62R:C -> A61R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A23R:C 0 1 A24R:A 0 2 A25R:C 0 3 A26R:G 0 4 A57R:A 0 5 A58R:G 0 6 A59R:U 0 7 A60R:G 0 [Edges] 0 {A23R:C -> A24R:A: adjacent_5p upward } 0 1 {A24R:A -> A23R:C: adjacent_3p downward } 0 2 {A23R:C -> A60R:G: pairing antiparallel cis Ww/Ww } 0 3 {A60R:G -> A23R:C: pairing antiparallel cis Ww/Ww } 0 4 {A24R:A -> A25R:C: adjacent_5p upward } 0 5 {A25R:C -> A24R:A: adjacent_3p downward } 0 6 {A24R:A -> A59R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A59R:U -> A24R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A25R:C -> A26R:G: adjacent_5p inward } 0 9 {A26R:G -> A25R:C: adjacent_3p inward } 0 10 {A25R:C -> A58R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A58R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A26R:G -> A57R:A: pairing parallel cis one_hbond 61 Hh/Wh } 0 13 {A57R:A -> A26R:G: pairing parallel cis one_hbond 61 Wh/Hh } 0 14 {A57R:A -> A58R:G: adjacent_5p upward } 0 15 {A58R:G -> A57R:A: adjacent_3p downward } 0 16 {A58R:G -> A59R:U: adjacent_5p upward } 0 17 {A59R:U -> A58R:G: adjacent_3p downward } 0 18 {A59R:U -> A60R:G: adjacent_5p upward } 0 19 {A60R:G -> A59R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A24R:A 0 1 A25R:C 0 2 A26R:G 0 3 A27R:C 0 4 A56R:G 0 5 A57R:A 0 6 A58R:G 0 7 A59R:U 0 [Edges] 0 {A24R:A -> A25R:C: adjacent_5p upward } 0 1 {A25R:C -> A24R:A: adjacent_3p downward } 0 2 {A24R:A -> A59R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A59R:U -> A24R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A25R:C -> A26R:G: adjacent_5p inward } 0 5 {A26R:G -> A25R:C: adjacent_3p inward } 0 6 {A25R:C -> A58R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A58R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A26R:G -> A27R:C: adjacent_5p } 0 9 {A27R:C -> A26R:G: adjacent_3p } 0 10 {A26R:G -> A57R:A: pairing parallel cis one_hbond 61 Hh/Wh } 0 11 {A57R:A -> A26R:G: pairing parallel cis one_hbond 61 Wh/Hh } 0 12 {A27R:C -> A56R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A56R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A56R:G -> A57R:A: adjacent_5p upward } 0 15 {A57R:A -> A56R:G: adjacent_3p downward } 0 16 {A57R:A -> A58R:G: adjacent_5p upward } 0 17 {A58R:G -> A57R:A: adjacent_3p downward } 0 18 {A58R:G -> A59R:U: adjacent_5p upward } 0 19 {A59R:U -> A58R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A25R:C 0 1 A26R:G 0 2 A27R:C 0 3 A28R:A 0 4 A55R:U 0 5 A56R:G 0 6 A57R:A 0 7 A58R:G 0 [Edges] 0 {A25R:C -> A26R:G: adjacent_5p inward } 0 1 {A26R:G -> A25R:C: adjacent_3p inward } 0 2 {A25R:C -> A58R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A58R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A26R:G -> A27R:C: adjacent_5p } 0 5 {A27R:C -> A26R:G: adjacent_3p } 0 6 {A26R:G -> A57R:A: pairing parallel cis one_hbond 61 Hh/Wh } 0 7 {A57R:A -> A26R:G: pairing parallel cis one_hbond 61 Wh/Hh } 0 8 {A27R:C -> A28R:A: adjacent_5p } 0 9 {A28R:A -> A27R:C: adjacent_3p } 0 10 {A27R:C -> A56R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A56R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A28R:A -> A55R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A55R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A28R:A -> A56R:G: outward } 0 15 {A56R:G -> A28R:A: outward } 0 16 {A55R:U -> A56R:G: adjacent_5p } 0 17 {A56R:G -> A55R:U: adjacent_3p } 0 18 {A56R:G -> A57R:A: adjacent_5p upward } 0 19 {A57R:A -> A56R:G: adjacent_3p downward } 0 20 {A57R:A -> A58R:G: adjacent_5p upward } 0 21 {A58R:G -> A57R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A26R:G 0 1 A27R:C 0 2 A28R:A 0 3 A29R:G 0 4 A54R:A 0 5 A55R:U 0 6 A56R:G 0 7 A57R:A 0 [Edges] 0 {A26R:G -> A27R:C: adjacent_5p } 0 1 {A27R:C -> A26R:G: adjacent_3p } 0 2 {A26R:G -> A57R:A: pairing parallel cis one_hbond 61 Hh/Wh } 0 3 {A57R:A -> A26R:G: pairing parallel cis one_hbond 61 Wh/Hh } 0 4 {A27R:C -> A28R:A: adjacent_5p } 0 5 {A28R:A -> A27R:C: adjacent_3p } 0 6 {A27R:C -> A56R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A56R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A28R:A -> A29R:G: adjacent_5p upward } 0 9 {A29R:G -> A28R:A: adjacent_3p downward } 0 10 {A28R:A -> A55R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A55R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A28R:A -> A56R:G: outward } 0 13 {A56R:G -> A28R:A: outward } 0 14 {A29R:G -> A54R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {A54R:A -> A29R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {A54R:A -> A55R:U: adjacent_5p upward } 0 17 {A55R:U -> A54R:A: adjacent_3p downward } 0 18 {A55R:U -> A56R:G: adjacent_5p } 0 19 {A56R:G -> A55R:U: adjacent_3p } 0 20 {A56R:G -> A57R:A: adjacent_5p upward } 0 21 {A57R:A -> A56R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A27R:C 0 1 A28R:A 0 2 A29R:G 0 3 A30R:A 0 4 A53R:U 0 5 A54R:A 0 6 A55R:U 0 7 A56R:G 0 [Edges] 0 {A27R:C -> A28R:A: adjacent_5p } 0 1 {A28R:A -> A27R:C: adjacent_3p } 0 2 {A27R:C -> A56R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A56R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A28R:A -> A29R:G: adjacent_5p upward } 0 5 {A29R:G -> A28R:A: adjacent_3p downward } 0 6 {A28R:A -> A55R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A55R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A28R:A -> A56R:G: outward } 0 9 {A56R:G -> A28R:A: outward } 0 10 {A29R:G -> A30R:A: adjacent_5p } 0 11 {A30R:A -> A29R:G: adjacent_3p } 0 12 {A29R:G -> A54R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A54R:A -> A29R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A30R:A -> A53R:U: pairing antiparallel trans XXIV Hh/Ww } 0 15 {A53R:U -> A30R:A: pairing antiparallel trans XXIV Ww/Hh } 0 16 {A30R:A -> A54R:A: outward } 0 17 {A54R:A -> A30R:A: outward } 0 18 {A53R:U -> A54R:A: adjacent_5p } 0 19 {A54R:A -> A53R:U: adjacent_3p } 0 20 {A54R:A -> A55R:U: adjacent_5p upward } 0 21 {A55R:U -> A54R:A: adjacent_3p downward } 0 22 {A55R:U -> A56R:G: adjacent_5p } 0 23 {A56R:G -> A55R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A31R:A 0 1 A32R:A 0 2 A33R:G 0 3 A34R:C 0 4 A48R:G 0 5 A49R:U 0 6 A50R:U 0 7 A51R:A 0 [Edges] 0 {A31R:A -> A32R:A: adjacent_5p upward } 0 1 {A32R:A -> A31R:A: adjacent_3p downward } 0 2 {A31R:A -> A51R:A: pairing parallel trans II Hh/Hh } 0 3 {A51R:A -> A31R:A: pairing parallel trans II Hh/Hh } 0 4 {A32R:A -> A33R:G: adjacent_5p upward } 0 5 {A33R:G -> A32R:A: adjacent_3p downward } 0 6 {A33R:G -> A34R:C: adjacent_5p upward } 0 7 {A34R:C -> A33R:G: adjacent_3p downward } 0 8 {A33R:G -> A49R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {A49R:U -> A33R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {A34R:C -> A48R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A48R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A48R:G -> A49R:U: adjacent_5p upward } 0 13 {A49R:U -> A48R:G: adjacent_3p downward } 0 14 {A49R:U -> A50R:U: adjacent_5p upward } 0 15 {A50R:U -> A49R:U: adjacent_3p downward } 0 16 {A50R:U -> A51R:A: adjacent_5p inward } 0 17 {A51R:A -> A50R:U: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A33R:G 0 1 A34R:C 0 2 A35R:G 0 3 A36R:U 0 4 A46R:G 0 5 A47R:C 0 6 A48R:G 0 7 A49R:U 0 [Edges] 0 {A33R:G -> A34R:C: adjacent_5p upward } 0 1 {A34R:C -> A33R:G: adjacent_3p downward } 0 2 {A33R:G -> A49R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A49R:U -> A33R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A34R:C -> A35R:G: adjacent_5p upward } 0 5 {A35R:G -> A34R:C: adjacent_3p downward } 0 6 {A34R:C -> A48R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A48R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A35R:G -> A36R:U: adjacent_5p upward } 0 9 {A36R:U -> A35R:G: adjacent_3p downward } 0 10 {A35R:G -> A47R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {A47R:C -> A35R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {A35R:G -> A48R:G: outward } 0 13 {A48R:G -> A35R:G: outward } 0 14 {A36R:U -> A46R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 15 {A46R:G -> A36R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 16 {A46R:G -> A47R:C: adjacent_5p upward } 0 17 {A47R:C -> A46R:G: adjacent_3p downward } 0 18 {A47R:C -> A48R:G: adjacent_5p } 0 19 {A48R:G -> A47R:C: adjacent_3p } 0 20 {A48R:G -> A49R:U: adjacent_5p upward } 0 21 {A49R:U -> A48R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A34R:C 0 1 A35R:G 0 2 A36R:U 0 3 A37R:C 0 4 A45R:G 0 5 A46R:G 0 6 A47R:C 0 7 A48R:G 0 [Edges] 0 {A34R:C -> A35R:G: adjacent_5p upward } 0 1 {A35R:G -> A34R:C: adjacent_3p downward } 0 2 {A34R:C -> A48R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A48R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A35R:G -> A36R:U: adjacent_5p upward } 0 5 {A36R:U -> A35R:G: adjacent_3p downward } 0 6 {A35R:G -> A47R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {A47R:C -> A35R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A35R:G -> A48R:G: outward } 0 9 {A48R:G -> A35R:G: outward } 0 10 {A36R:U -> A37R:C: adjacent_5p } 0 11 {A37R:C -> A36R:U: adjacent_3p } 0 12 {A36R:U -> A46R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 13 {A46R:G -> A36R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 14 {A37R:C -> A45R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A45R:G -> A37R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A45R:G -> A46R:G: adjacent_5p upward } 0 17 {A46R:G -> A45R:G: adjacent_3p downward } 0 18 {A46R:G -> A47R:C: adjacent_5p upward } 0 19 {A47R:C -> A46R:G: adjacent_3p downward } 0 20 {A47R:C -> A48R:G: adjacent_5p } 0 21 {A48R:G -> A47R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:C 0 3 A5R:U 0 4 A18R:A 0 5 A19R:G 0 6 A20R:G 0 7 A21R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:C: adjacent_5p } 0 5 {A4R:C -> A3R:C: adjacent_3p } 0 6 {A3R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:U: adjacent_5p } 0 9 {A5R:U -> A4R:C: adjacent_3p } 0 10 {A4R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A19R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A18R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A18R:A -> A19R:G: adjacent_5p upward } 0 15 {A19R:G -> A18R:A: adjacent_3p downward } 0 16 {A19R:G -> A20R:G: adjacent_5p upward } 0 17 {A20R:G -> A19R:G: adjacent_3p downward } 0 18 {A20R:G -> A21R:C: adjacent_5p upward } 0 19 {A21R:C -> A20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:C 0 2 A5R:U 0 3 A6R:U 0 4 A17R:A 0 5 A18R:A 0 6 A19R:G 0 7 A20R:G 0 [Edges] 0 {A3R:C -> A4R:C: adjacent_5p } 0 1 {A4R:C -> A3R:C: adjacent_3p } 0 2 {A3R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:U: adjacent_5p } 0 5 {A5R:U -> A4R:C: adjacent_3p } 0 6 {A4R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> A6R:U: adjacent_5p upward } 0 9 {A6R:U -> A5R:U: adjacent_3p downward } 0 10 {A5R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A18R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A17R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A17R:A -> A18R:A: adjacent_5p upward } 0 15 {A18R:A -> A17R:A: adjacent_3p downward } 0 16 {A18R:A -> A19R:G: adjacent_5p upward } 0 17 {A19R:G -> A18R:A: adjacent_3p downward } 0 18 {A19R:G -> A20R:G: adjacent_5p upward } 0 19 {A20R:G -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:U 0 2 A6R:U 0 3 A7R:C 0 4 A16R:G 0 5 A17R:A 0 6 A18R:A 0 7 A19R:G 0 [Edges] 0 {A4R:C -> A5R:U: adjacent_5p } 0 1 {A5R:U -> A4R:C: adjacent_3p } 0 2 {A4R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A18R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:U -> A7R:C: adjacent_5p } 0 9 {A7R:C -> A6R:U: adjacent_3p } 0 10 {A6R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A17R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A16R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A16R:G -> A17R:A: adjacent_5p upward } 0 15 {A17R:A -> A16R:G: adjacent_3p downward } 0 16 {A17R:A -> A18R:A: adjacent_5p upward } 0 17 {A18R:A -> A17R:A: adjacent_3p downward } 0 18 {A18R:A -> A19R:G: adjacent_5p upward } 0 19 {A19R:G -> A18R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:U 0 2 A7R:C 0 3 A8R:C 0 4 A15R:G 0 5 A16R:G 0 6 A17R:A 0 7 A18R:A 0 [Edges] 0 {A5R:U -> A6R:U: adjacent_5p upward } 0 1 {A6R:U -> A5R:U: adjacent_3p downward } 0 2 {A5R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A18R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:U -> A7R:C: adjacent_5p } 0 5 {A7R:C -> A6R:U: adjacent_3p } 0 6 {A6R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A17R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:C -> A8R:C: adjacent_5p upward } 0 9 {A8R:C -> A7R:C: adjacent_3p downward } 0 10 {A7R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A16R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A15R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A15R:G -> A16R:G: adjacent_5p upward } 0 15 {A16R:G -> A15R:G: adjacent_3p downward } 0 16 {A16R:G -> A17R:A: adjacent_5p upward } 0 17 {A17R:A -> A16R:G: adjacent_3p downward } 0 18 {A17R:A -> A18R:A: adjacent_5p upward } 0 19 {A18R:A -> A17R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:U 0 1 A7R:C 0 2 A8R:C 0 3 A9R:C 0 4 A14R:G 0 5 A15R:G 0 6 A16R:G 0 7 A17R:A 0 [Edges] 0 {A6R:U -> A7R:C: adjacent_5p } 0 1 {A7R:C -> A6R:U: adjacent_3p } 0 2 {A6R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A17R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:C -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:C: adjacent_3p downward } 0 6 {A7R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A16R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:C -> A9R:C: adjacent_5p } 0 9 {A9R:C -> A8R:C: adjacent_3p } 0 10 {A8R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A15R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A14R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:G -> A15R:G: adjacent_5p } 0 15 {A15R:G -> A14R:G: adjacent_3p } 0 16 {A15R:G -> A16R:G: adjacent_5p upward } 0 17 {A16R:G -> A15R:G: adjacent_3p downward } 0 18 {A16R:G -> A17R:A: adjacent_5p upward } 0 19 {A17R:A -> A16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:C 0 2 A9R:C 0 3 A10R:A 0 4 A13R:A 0 5 A14R:G 0 6 A15R:G 0 7 A16R:G 0 [Edges] 0 {A7R:C -> A8R:C: adjacent_5p upward } 0 1 {A8R:C -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A16R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:C -> A9R:C: adjacent_5p } 0 5 {A9R:C -> A8R:C: adjacent_3p } 0 6 {A8R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A15R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:C -> A10R:A: adjacent_5p upward } 0 9 {A10R:A -> A9R:C: adjacent_3p downward } 0 10 {A9R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A14R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:A -> A13R:A: pairing antiparallel trans one_hbond 41 Ss/Hw } 0 13 {A13R:A -> A10R:A: pairing antiparallel trans one_hbond 41 Hw/Ss } 0 14 {A13R:A -> A14R:G: adjacent_5p upward } 0 15 {A14R:G -> A13R:A: adjacent_3p downward } 0 16 {A14R:G -> A15R:G: adjacent_5p } 0 17 {A15R:G -> A14R:G: adjacent_3p } 0 18 {A15R:G -> A16R:G: adjacent_5p upward } 0 19 {A16R:G -> A15R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A11R:G 0 1 A12R:U 0 2 A13R:G 0 3 A14R:G 0 4 B122R:C 0 5 B123R:C 0 6 B124R:A 0 7 B125R:C 0 [Edges] 0 {A11R:G -> A12R:U: adjacent_5p upward } 0 1 {A12R:U -> A11R:G: adjacent_3p downward } 0 2 {A11R:G -> B125R:C: pairing antiparallel cis Ww/Ww } 0 3 {B125R:C -> A11R:G: pairing antiparallel cis Ww/Ww } 0 4 {A12R:U -> A13R:G: adjacent_5p upward } 0 5 {A13R:G -> A12R:U: adjacent_3p downward } 0 6 {A12R:U -> B124R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {B124R:A -> A12R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {A13R:G -> A14R:G: adjacent_5p upward } 0 9 {A14R:G -> A13R:G: adjacent_3p downward } 0 10 {A13R:G -> B123R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B123R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:G -> B124R:A: outward } 0 13 {B124R:A -> A13R:G: outward } 0 14 {A14R:G -> B122R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B122R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B122R:C -> B123R:C: adjacent_5p } 0 17 {B123R:C -> B122R:C: adjacent_3p } 0 18 {B123R:C -> B124R:A: adjacent_5p } 0 19 {B124R:A -> B123R:C: adjacent_3p } 0 20 {B124R:A -> B125R:C: adjacent_5p upward } 0 21 {B125R:C -> B124R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A12R:U 0 1 A13R:G 0 2 A14R:G 0 3 A15R:U 0 4 B121R:A 0 5 B122R:C 0 6 B123R:C 0 7 B124R:A 0 [Edges] 0 {A12R:U -> A13R:G: adjacent_5p upward } 0 1 {A13R:G -> A12R:U: adjacent_3p downward } 0 2 {A12R:U -> B124R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {B124R:A -> A12R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {A13R:G -> A14R:G: adjacent_5p upward } 0 5 {A14R:G -> A13R:G: adjacent_3p downward } 0 6 {A13R:G -> B123R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B123R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:G -> B124R:A: outward } 0 9 {B124R:A -> A13R:G: outward } 0 10 {A14R:G -> A15R:U: adjacent_5p upward } 0 11 {A15R:U -> A14R:G: adjacent_3p downward } 0 12 {A14R:G -> B122R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B122R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A15R:U -> B121R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B121R:A -> A15R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B121R:A -> B122R:C: adjacent_5p upward } 0 17 {B122R:C -> B121R:A: adjacent_3p downward } 0 18 {B122R:C -> B123R:C: adjacent_5p } 0 19 {B123R:C -> B122R:C: adjacent_3p } 0 20 {B123R:C -> B124R:A: adjacent_5p } 0 21 {B124R:A -> B123R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A21R:G 0 1 A22R:A 0 2 A23R:G 0 3 A24R:G 0 4 B103R:C 0 5 B104R:C 0 6 B105R:G 0 7 B106R:A 0 [Edges] 0 {A21R:G -> A22R:A: adjacent_5p } 0 1 {A22R:A -> A21R:G: adjacent_3p } 0 2 {A21R:G -> B105R:G: inward } 0 3 {B105R:G -> A21R:G: inward } 0 4 {A21R:G -> B106R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {B106R:A -> A21R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {A22R:A -> A23R:G: adjacent_5p upward } 0 7 {A23R:G -> A22R:A: adjacent_3p downward } 0 8 {A22R:A -> B105R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {B105R:G -> A22R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {A22R:A -> B106R:A: outward } 0 11 {B106R:A -> A22R:A: outward } 0 12 {A23R:G -> A24R:G: adjacent_5p upward } 0 13 {A24R:G -> A23R:G: adjacent_3p downward } 0 14 {A23R:G -> B104R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B104R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A24R:G -> B103R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {B103R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {B103R:C -> B104R:C: adjacent_5p upward } 0 19 {B104R:C -> B103R:C: adjacent_3p downward } 0 20 {B104R:C -> B105R:G: adjacent_5p upward } 0 21 {B105R:G -> B104R:C: adjacent_3p downward } 0 22 {B105R:G -> B106R:A: adjacent_5p } 0 23 {B106R:A -> B105R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 18 . . 5 . . 15 . 19 . 20 . 6 3 9 . . . 21 . 22 7 5 11 . . . . 23 . [GraphModel] [Vertices] 0 B109R:C 0 1 B110R:U 0 2 B111R:C 0 3 B112R:G 0 4 B115R:A 0 5 B116R:G 0 6 B117R:A 0 7 B118R:G 0 [Edges] 0 {B109R:C -> B110R:U: adjacent_5p } 0 1 {B110R:U -> B109R:C: adjacent_3p } 0 2 {B109R:C -> B118R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B118R:G -> B109R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B110R:U -> B111R:C: adjacent_5p upward } 0 5 {B111R:C -> B110R:U: adjacent_3p downward } 0 6 {B110R:U -> B117R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B117R:A -> B110R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B111R:C -> B112R:G: adjacent_5p upward } 0 9 {B112R:G -> B111R:C: adjacent_3p downward } 0 10 {B111R:C -> B116R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B116R:G -> B111R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B112R:G -> B115R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {B115R:A -> B112R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {B112R:G -> B116R:G: outward } 0 15 {B116R:G -> B112R:G: outward } 0 16 {B115R:A -> B116R:G: adjacent_5p } 0 17 {B116R:G -> B115R:A: adjacent_3p } 0 18 {B116R:G -> B117R:A: adjacent_5p upward } 0 19 {B117R:A -> B116R:G: adjacent_3p downward } 0 20 {B117R:A -> B118R:G: adjacent_5p upward } 0 21 {B118R:G -> B117R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:U 0 3 A5R:C 0 4 A11R:G 0 5 A12R:A 0 6 A13R:G 0 7 A14R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A14R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A13R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:U -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:U: adjacent_3p downward } 0 10 {A4R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A12R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A11R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A11R:G -> A12R:A: adjacent_5p upward } 0 15 {A12R:A -> A11R:G: adjacent_3p downward } 0 16 {A12R:A -> A13R:G: adjacent_5p upward } 0 17 {A13R:G -> A12R:A: adjacent_3p downward } 0 18 {A13R:G -> A14R:C: adjacent_5p upward } 0 19 {A14R:C -> A13R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:U 0 3 A5R:C 0 4 A34R:G 0 5 A35R:A 0 6 A36R:U 0 7 A37R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A37R:C: pairing antiparallel cis 122 Ww/Ww } 0 3 {A37R:C -> A2R:G: pairing antiparallel cis 122 Ww/Ww } 0 4 {A3R:A -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A36R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A36R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:U -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:U: adjacent_3p downward } 0 10 {A4R:U -> A35R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A35R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:C -> A34R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A34R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A34R:G -> A35R:A: adjacent_5p upward } 0 15 {A35R:A -> A34R:G: adjacent_3p downward } 0 16 {A35R:A -> A36R:U: adjacent_5p upward } 0 17 {A36R:U -> A35R:A: adjacent_3p downward } 0 18 {A36R:U -> A37R:C: adjacent_5p } 0 19 {A37R:C -> A36R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:U 0 2 A5R:C 0 3 A6R:C 0 4 A33R:G 0 5 A34R:G 0 6 A35R:A 0 7 A36R:U 0 [Edges] 0 {A3R:A -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A36R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A36R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:U -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:U: adjacent_3p downward } 0 6 {A4R:U -> A35R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A35R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:C -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:C: adjacent_3p downward } 0 10 {A5R:C -> A34R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A34R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A33R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A33R:G -> A34R:G: adjacent_5p } 0 15 {A34R:G -> A33R:G: adjacent_3p } 0 16 {A34R:G -> A35R:A: adjacent_5p upward } 0 17 {A35R:A -> A34R:G: adjacent_3p downward } 0 18 {A35R:A -> A36R:U: adjacent_5p upward } 0 19 {A36R:U -> A35R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:C 0 1 A11R:U 0 2 A12R:G 0 3 A13R:G 0 4 A20R:C 0 5 A21R:C 0 6 A22R:A 0 7 A23R:G 0 [Edges] 0 {A10R:C -> A11R:U: adjacent_5p upward } 0 1 {A11R:U -> A10R:C: adjacent_3p downward } 0 2 {A10R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:U -> A12R:G: adjacent_5p upward } 0 5 {A12R:G -> A11R:U: adjacent_3p downward } 0 6 {A11R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A22R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A12R:G -> A13R:G: adjacent_5p upward } 0 9 {A13R:G -> A12R:G: adjacent_3p downward } 0 10 {A12R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A21R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:G -> A22R:A: outward } 0 13 {A22R:A -> A12R:G: outward } 0 14 {A13R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A20R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A20R:C -> A21R:C: adjacent_5p upward } 0 17 {A21R:C -> A20R:C: adjacent_3p downward } 0 18 {A21R:C -> A22R:A: adjacent_5p upward } 0 19 {A22R:A -> A21R:C: adjacent_3p downward } 0 20 {A22R:A -> A23R:G: adjacent_5p upward } 0 21 {A23R:G -> A22R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:G 0 2 A13R:G 0 3 A14R:C 0 4 A19R:G 0 5 A20R:C 0 6 A21R:C 0 7 A22R:A 0 [Edges] 0 {A11R:U -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:U: adjacent_3p downward } 0 2 {A11R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A22R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A12R:G -> A13R:G: adjacent_5p upward } 0 5 {A13R:G -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> A22R:A: outward } 0 9 {A22R:A -> A12R:G: outward } 0 10 {A13R:G -> A14R:C: adjacent_5p upward } 0 11 {A14R:C -> A13R:G: adjacent_3p downward } 0 12 {A13R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A20R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A19R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A19R:G -> A20R:C: adjacent_5p upward } 0 17 {A20R:C -> A19R:G: adjacent_3p downward } 0 18 {A20R:C -> A21R:C: adjacent_5p upward } 0 19 {A21R:C -> A20R:C: adjacent_3p downward } 0 20 {A21R:C -> A22R:A: adjacent_5p upward } 0 21 {A22R:A -> A21R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:G 0 2 A14R:C 0 3 A15R:G 0 4 A18R:A 0 5 A19R:G 0 6 A20R:C 0 7 A21R:C 0 [Edges] 0 {A12R:G -> A13R:G: adjacent_5p upward } 0 1 {A13R:G -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:G -> A14R:C: adjacent_5p upward } 0 5 {A14R:C -> A13R:G: adjacent_3p downward } 0 6 {A13R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:C -> A15R:G: adjacent_5p upward } 0 9 {A15R:G -> A14R:C: adjacent_3p downward } 0 10 {A14R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A19R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A15R:G -> A18R:A: pairing antiparallel trans one_hbond 54 Ws/Hh } 0 13 {A18R:A -> A15R:G: pairing antiparallel trans one_hbond 54 Hh/Ws } 0 14 {A18R:A -> A19R:G: adjacent_5p upward } 0 15 {A19R:G -> A18R:A: adjacent_3p downward } 0 16 {A19R:G -> A20R:C: adjacent_5p upward } 0 17 {A20R:C -> A19R:G: adjacent_3p downward } 0 18 {A20R:C -> A21R:C: adjacent_5p upward } 0 19 {A21R:C -> A20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:U 0 2 A5R:G 0 3 A6R:C 0 4 A24R:G 0 5 A25R:C 0 6 A26R:A 0 7 A27R:C 0 [Edges] 0 {A3R:G -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:U -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:U: adjacent_3p downward } 0 6 {A4R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A26R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:G -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A25R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A26R:A: outward } 0 13 {A26R:A -> A5R:G: outward } 0 14 {A6R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A24R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A24R:G -> A25R:C: adjacent_5p upward } 0 17 {A25R:C -> A24R:G: adjacent_3p downward } 0 18 {A25R:C -> A26R:A: adjacent_5p } 0 19 {A26R:A -> A25R:C: adjacent_3p } 0 20 {A26R:A -> A27R:C: adjacent_5p upward } 0 21 {A27R:C -> A26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:G 0 2 A6R:C 0 3 A7R:U 0 4 A23R:C 0 5 A24R:G 0 6 A25R:C 0 7 A26R:A 0 [Edges] 0 {A4R:U -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:U: adjacent_3p downward } 0 2 {A4R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A26R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:G -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A25R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A26R:A: outward } 0 9 {A26R:A -> A5R:G: outward } 0 10 {A6R:C -> A7R:U: adjacent_5p upward } 0 11 {A7R:U -> A6R:C: adjacent_3p downward } 0 12 {A6R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A24R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:U -> A23R:C: pairing antiparallel trans one_hbond Ws/Hw } 0 15 {A23R:C -> A7R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 16 {A23R:C -> A24R:G: adjacent_5p upward } 0 17 {A24R:G -> A23R:C: adjacent_3p downward } 0 18 {A24R:G -> A25R:C: adjacent_5p upward } 0 19 {A25R:C -> A24R:G: adjacent_3p downward } 0 20 {A25R:C -> A26R:A: adjacent_5p } 0 21 {A26R:A -> A25R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:C 0 2 A7R:U 0 3 A8R:C 0 4 A22R:C 0 5 A23R:C 0 6 A24R:G 0 7 A25R:C 0 [Edges] 0 {A5R:G -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:C -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:C: adjacent_3p downward } 0 6 {A6R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A24R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:U -> A8R:C: adjacent_5p upward } 0 9 {A8R:C -> A7R:U: adjacent_3p downward } 0 10 {A7R:U -> A23R:C: pairing antiparallel trans one_hbond Ws/Hw } 0 11 {A23R:C -> A7R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 12 {A8R:C -> A22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 13 {A22R:C -> A8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 14 {A22R:C -> A23R:C: adjacent_5p upward } 0 15 {A23R:C -> A22R:C: adjacent_3p downward } 0 16 {A23R:C -> A24R:G: adjacent_5p upward } 0 17 {A24R:G -> A23R:C: adjacent_3p downward } 0 18 {A24R:G -> A25R:C: adjacent_5p upward } 0 19 {A25R:C -> A24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:U 0 2 A8R:C 0 3 A9R:A 0 4 A21R:A 0 5 A22R:C 0 6 A23R:C 0 7 A24R:G 0 [Edges] 0 {A6R:C -> A7R:U: adjacent_5p upward } 0 1 {A7R:U -> A6R:C: adjacent_3p downward } 0 2 {A6R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:U -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:U: adjacent_3p downward } 0 6 {A7R:U -> A23R:C: pairing antiparallel trans one_hbond Ws/Hw } 0 7 {A23R:C -> A7R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 8 {A8R:C -> A9R:A: adjacent_5p inward } 0 9 {A9R:A -> A8R:C: adjacent_3p inward } 0 10 {A8R:C -> A22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 11 {A22R:C -> A8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 12 {A9R:A -> A21R:A: pairing parallel trans II Hh/Hh } 0 13 {A21R:A -> A9R:A: pairing parallel trans II Hh/Hh } 0 14 {A21R:A -> A22R:C: adjacent_5p upward } 0 15 {A22R:C -> A21R:A: adjacent_3p downward } 0 16 {A22R:C -> A23R:C: adjacent_5p upward } 0 17 {A23R:C -> A22R:C: adjacent_3p downward } 0 18 {A23R:C -> A24R:G: adjacent_5p upward } 0 19 {A24R:G -> A23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:A 0 2 A13R:G 0 3 A14R:G 0 4 A17R:A 0 5 A18R:C 0 6 A19R:G 0 7 A20R:A 0 [Edges] 0 {A11R:U -> A12R:A: adjacent_5p upward } 0 1 {A12R:A -> A11R:U: adjacent_3p downward } 0 2 {A11R:U -> A20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 3 {A20R:A -> A11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 4 {A12R:A -> A13R:G: adjacent_5p upward } 0 5 {A13R:G -> A12R:A: adjacent_3p downward } 0 6 {A12R:A -> A19R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {A19R:G -> A12R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {A12R:A -> A20R:A: outward } 0 9 {A20R:A -> A12R:A: outward } 0 10 {A13R:G -> A14R:G: adjacent_5p upward } 0 11 {A14R:G -> A13R:G: adjacent_3p downward } 0 12 {A13R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A18R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:G -> A17R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {A17R:A -> A14R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {A17R:A -> A18R:C: adjacent_5p } 0 17 {A18R:C -> A17R:A: adjacent_3p } 0 18 {A18R:C -> A19R:G: adjacent_5p upward } 0 19 {A19R:G -> A18R:C: adjacent_3p downward } 0 20 {A19R:G -> A20R:A: adjacent_5p } 0 21 {A20R:A -> A19R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B3R:G 0 1 B4R:U 0 2 B5R:G 0 3 B6R:C 0 4 B24R:G 0 5 B25R:C 0 6 B26R:A 0 7 B27R:C 0 [Edges] 0 {B3R:G -> B4R:U: adjacent_5p upward } 0 1 {B4R:U -> B3R:G: adjacent_3p downward } 0 2 {B3R:G -> B27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B27R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B4R:U -> B5R:G: adjacent_5p upward } 0 5 {B5R:G -> B4R:U: adjacent_3p downward } 0 6 {B4R:U -> B26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B26R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B5R:G -> B6R:C: adjacent_5p upward } 0 9 {B6R:C -> B5R:G: adjacent_3p downward } 0 10 {B5R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B25R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B5R:G -> B26R:A: outward } 0 13 {B26R:A -> B5R:G: outward } 0 14 {B6R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B24R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B24R:G -> B25R:C: adjacent_5p upward } 0 17 {B25R:C -> B24R:G: adjacent_3p downward } 0 18 {B25R:C -> B26R:A: adjacent_5p upward } 0 19 {B26R:A -> B25R:C: adjacent_3p downward } 0 20 {B26R:A -> B27R:C: adjacent_5p upward } 0 21 {B27R:C -> B26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B5R:G 0 1 B6R:C 0 2 B7R:U 0 3 B8R:C 0 4 B22R:C 0 5 B23R:C 0 6 B24R:G 0 7 B25R:C 0 [Edges] 0 {B5R:G -> B6R:C: adjacent_5p upward } 0 1 {B6R:C -> B5R:G: adjacent_3p downward } 0 2 {B5R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B25R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B6R:C -> B7R:U: adjacent_5p upward } 0 5 {B7R:U -> B6R:C: adjacent_3p downward } 0 6 {B6R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B24R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B7R:U -> B8R:C: adjacent_5p upward } 0 9 {B8R:C -> B7R:U: adjacent_3p downward } 0 10 {B8R:C -> B22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 11 {B22R:C -> B8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 12 {B22R:C -> B23R:C: adjacent_5p upward } 0 13 {B23R:C -> B22R:C: adjacent_3p downward } 0 14 {B23R:C -> B24R:G: adjacent_5p upward } 0 15 {B24R:G -> B23R:C: adjacent_3p downward } 0 16 {B24R:G -> B25R:C: adjacent_5p upward } 0 17 {B25R:C -> B24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 B6R:C 0 1 B7R:U 0 2 B8R:C 0 3 B9R:A 0 4 B21R:A 0 5 B22R:C 0 6 B23R:C 0 7 B24R:G 0 [Edges] 0 {B6R:C -> B7R:U: adjacent_5p upward } 0 1 {B7R:U -> B6R:C: adjacent_3p downward } 0 2 {B6R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B24R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B7R:U -> B8R:C: adjacent_5p upward } 0 5 {B8R:C -> B7R:U: adjacent_3p downward } 0 6 {B8R:C -> B9R:A: adjacent_5p inward } 0 7 {B9R:A -> B8R:C: adjacent_3p inward } 0 8 {B8R:C -> B22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 9 {B22R:C -> B8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 10 {B9R:A -> B21R:A: pairing parallel trans II Hh/Hh } 0 11 {B21R:A -> B9R:A: pairing parallel trans II Hh/Hh } 0 12 {B21R:A -> B22R:C: adjacent_5p upward } 0 13 {B22R:C -> B21R:A: adjacent_3p downward } 0 14 {B22R:C -> B23R:C: adjacent_5p upward } 0 15 {B23R:C -> B22R:C: adjacent_3p downward } 0 16 {B23R:C -> B24R:G: adjacent_5p upward } 0 17 {B24R:G -> B23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 C3R:G 0 1 C4R:U 0 2 C5R:G 0 3 C6R:C 0 4 C24R:G 0 5 C25R:C 0 6 C26R:A 0 7 C27R:C 0 [Edges] 0 {C3R:G -> C4R:U: adjacent_5p upward } 0 1 {C4R:U -> C3R:G: adjacent_3p downward } 0 2 {C3R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C27R:C -> C3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C4R:U -> C5R:G: adjacent_5p upward } 0 5 {C5R:G -> C4R:U: adjacent_3p downward } 0 6 {C4R:U -> C26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C26R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C5R:G -> C6R:C: adjacent_5p upward } 0 9 {C6R:C -> C5R:G: adjacent_3p downward } 0 10 {C5R:G -> C25R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C25R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C5R:G -> C26R:A: outward } 0 13 {C26R:A -> C5R:G: outward } 0 14 {C6R:C -> C24R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {C24R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {C24R:G -> C25R:C: adjacent_5p upward } 0 17 {C25R:C -> C24R:G: adjacent_3p downward } 0 18 {C25R:C -> C26R:A: adjacent_5p } 0 19 {C26R:A -> C25R:C: adjacent_3p } 0 20 {C26R:A -> C27R:C: adjacent_5p upward } 0 21 {C27R:C -> C26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C5R:G 0 1 C6R:C 0 2 C7R:U 0 3 C8R:C 0 4 C22R:C 0 5 C23R:C 0 6 C24R:G 0 7 C25R:C 0 [Edges] 0 {C5R:G -> C6R:C: adjacent_5p upward } 0 1 {C6R:C -> C5R:G: adjacent_3p downward } 0 2 {C5R:G -> C25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C25R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C6R:C -> C7R:U: adjacent_5p upward } 0 5 {C7R:U -> C6R:C: adjacent_3p downward } 0 6 {C6R:C -> C24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C24R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C7R:U -> C8R:C: adjacent_5p upward } 0 9 {C8R:C -> C7R:U: adjacent_3p downward } 0 10 {C8R:C -> C22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 11 {C22R:C -> C8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 12 {C22R:C -> C23R:C: adjacent_5p upward } 0 13 {C23R:C -> C22R:C: adjacent_3p downward } 0 14 {C23R:C -> C24R:G: adjacent_5p upward } 0 15 {C24R:G -> C23R:C: adjacent_3p downward } 0 16 {C24R:G -> C25R:C: adjacent_5p upward } 0 17 {C25R:C -> C24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 C6R:C 0 1 C7R:U 0 2 C8R:C 0 3 C9R:A 0 4 C21R:A 0 5 C22R:C 0 6 C23R:C 0 7 C24R:G 0 [Edges] 0 {C6R:C -> C7R:U: adjacent_5p upward } 0 1 {C7R:U -> C6R:C: adjacent_3p downward } 0 2 {C6R:C -> C24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C24R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C7R:U -> C8R:C: adjacent_5p upward } 0 5 {C8R:C -> C7R:U: adjacent_3p downward } 0 6 {C8R:C -> C9R:A: adjacent_5p inward } 0 7 {C9R:A -> C8R:C: adjacent_3p inward } 0 8 {C8R:C -> C22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 9 {C22R:C -> C8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 10 {C9R:A -> C21R:A: pairing parallel trans II Hh/Hh } 0 11 {C21R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 12 {C21R:A -> C22R:C: adjacent_5p upward } 0 13 {C22R:C -> C21R:A: adjacent_3p downward } 0 14 {C22R:C -> C23R:C: adjacent_5p upward } 0 15 {C23R:C -> C22R:C: adjacent_3p downward } 0 16 {C23R:C -> C24R:G: adjacent_5p upward } 0 17 {C24R:G -> C23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 C11R:U 0 1 C12R:A 0 2 C13R:G 0 3 C14R:G 0 4 C17R:A 0 5 C18R:C 0 6 C19R:G 0 7 C20R:A 0 [Edges] 0 {C11R:U -> C12R:A: adjacent_5p } 0 1 {C12R:A -> C11R:U: adjacent_3p } 0 2 {C11R:U -> C20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 3 {C20R:A -> C11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 4 {C12R:A -> C13R:G: adjacent_5p upward } 0 5 {C13R:G -> C12R:A: adjacent_3p downward } 0 6 {C12R:A -> C19R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {C19R:G -> C12R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {C12R:A -> C20R:A: outward } 0 9 {C20R:A -> C12R:A: outward } 0 10 {C13R:G -> C14R:G: adjacent_5p upward } 0 11 {C14R:G -> C13R:G: adjacent_3p downward } 0 12 {C13R:G -> C18R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C18R:C -> C13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C14R:G -> C17R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 15 {C17R:A -> C14R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 16 {C17R:A -> C18R:C: adjacent_5p } 0 17 {C18R:C -> C17R:A: adjacent_3p } 0 18 {C18R:C -> C19R:G: adjacent_5p upward } 0 19 {C19R:G -> C18R:C: adjacent_3p downward } 0 20 {C19R:G -> C20R:A: adjacent_5p } 0 21 {C20R:A -> C19R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:U 0 2 A5R:G 0 3 A6R:C 0 4 A24R:G 0 5 A25R:C 0 6 A26R:A 0 7 A27R:C 0 [Edges] 0 {A3R:G -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:U -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:U: adjacent_3p downward } 0 6 {A4R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A26R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:G -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A25R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A26R:A: outward } 0 13 {A26R:A -> A5R:G: outward } 0 14 {A6R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A24R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A24R:G -> A25R:C: adjacent_5p upward } 0 17 {A25R:C -> A24R:G: adjacent_3p downward } 0 18 {A25R:C -> A26R:A: adjacent_5p upward } 0 19 {A26R:A -> A25R:C: adjacent_3p downward } 0 20 {A26R:A -> A27R:C: adjacent_5p upward } 0 21 {A27R:C -> A26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:G 0 2 A6R:C 0 3 A7R:U 0 4 A23R:C 0 5 A24R:G 0 6 A25R:C 0 7 A26R:A 0 [Edges] 0 {A4R:U -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:U: adjacent_3p downward } 0 2 {A4R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A26R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:G -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A25R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A26R:A: outward } 0 9 {A26R:A -> A5R:G: outward } 0 10 {A6R:C -> A7R:U: adjacent_5p upward } 0 11 {A7R:U -> A6R:C: adjacent_3p downward } 0 12 {A6R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A24R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:U -> A23R:C: pairing antiparallel trans one_hbond Ws/Hw } 0 15 {A23R:C -> A7R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 16 {A23R:C -> A24R:G: adjacent_5p upward } 0 17 {A24R:G -> A23R:C: adjacent_3p downward } 0 18 {A24R:G -> A25R:C: adjacent_5p upward } 0 19 {A25R:C -> A24R:G: adjacent_3p downward } 0 20 {A25R:C -> A26R:A: adjacent_5p upward } 0 21 {A26R:A -> A25R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:U 0 2 A8R:C 0 3 A9R:A 0 4 A21R:A 0 5 A22R:C 0 6 A23R:C 0 7 A24R:G 0 [Edges] 0 {A6R:C -> A7R:U: adjacent_5p upward } 0 1 {A7R:U -> A6R:C: adjacent_3p downward } 0 2 {A6R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:U -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:U: adjacent_3p downward } 0 6 {A7R:U -> A23R:C: pairing antiparallel trans one_hbond Ws/Hw } 0 7 {A23R:C -> A7R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 8 {A8R:C -> A9R:A: adjacent_5p inward } 0 9 {A9R:A -> A8R:C: adjacent_3p inward } 0 10 {A9R:A -> A21R:A: pairing parallel trans II Hh/Hh } 0 11 {A21R:A -> A9R:A: pairing parallel trans II Hh/Hh } 0 12 {A21R:A -> A22R:C: adjacent_5p upward } 0 13 {A22R:C -> A21R:A: adjacent_3p downward } 0 14 {A22R:C -> A23R:C: adjacent_5p upward } 0 15 {A23R:C -> A22R:C: adjacent_3p downward } 0 16 {A23R:C -> A24R:G: adjacent_5p upward } 0 17 {A24R:G -> A23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:A 0 2 A13R:U 0 3 A14R:G 0 4 A17R:A 0 5 A18R:A 0 6 A19R:G 0 7 A20R:A 0 [Edges] 0 {A11R:U -> A12R:A: adjacent_5p } 0 1 {A12R:A -> A11R:U: adjacent_3p } 0 2 {A11R:U -> A20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 3 {A20R:A -> A11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 4 {A12R:A -> A13R:U: adjacent_5p upward } 0 5 {A13R:U -> A12R:A: adjacent_3p downward } 0 6 {A12R:A -> A19R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {A19R:G -> A12R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {A12R:A -> A20R:A: outward } 0 9 {A20R:A -> A12R:A: outward } 0 10 {A13R:U -> A14R:G: adjacent_5p upward } 0 11 {A14R:G -> A13R:U: adjacent_3p downward } 0 12 {A13R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A18R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A14R:G -> A17R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {A17R:A -> A14R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {A14R:G -> A18R:A: outward } 0 17 {A18R:A -> A14R:G: outward } 0 18 {A17R:A -> A18R:A: adjacent_5p } 0 19 {A18R:A -> A17R:A: adjacent_3p } 0 20 {A18R:A -> A19R:G: adjacent_5p upward } 0 21 {A19R:G -> A18R:A: adjacent_3p downward } 0 22 {A19R:G -> A20R:A: adjacent_5p } 0 23 {A20R:A -> A19R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 B3R:G 0 1 B4R:U 0 2 B5R:G 0 3 B6R:C 0 4 B24R:G 0 5 B25R:C 0 6 B26R:A 0 7 B27R:C 0 [Edges] 0 {B3R:G -> B4R:U: adjacent_5p upward } 0 1 {B4R:U -> B3R:G: adjacent_3p downward } 0 2 {B3R:G -> B27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B27R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B4R:U -> B5R:G: adjacent_5p upward } 0 5 {B5R:G -> B4R:U: adjacent_3p downward } 0 6 {B4R:U -> B26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B26R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B5R:G -> B6R:C: adjacent_5p upward } 0 9 {B6R:C -> B5R:G: adjacent_3p downward } 0 10 {B5R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B25R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B5R:G -> B26R:A: outward } 0 13 {B26R:A -> B5R:G: outward } 0 14 {B6R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B24R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B24R:G -> B25R:C: adjacent_5p upward } 0 17 {B25R:C -> B24R:G: adjacent_3p downward } 0 18 {B25R:C -> B26R:A: adjacent_5p upward } 0 19 {B26R:A -> B25R:C: adjacent_3p downward } 0 20 {B26R:A -> B27R:C: adjacent_5p upward } 0 21 {B27R:C -> B26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B4R:U 0 1 B5R:G 0 2 B6R:C 0 3 B7R:U 0 4 B23R:C 0 5 B24R:G 0 6 B25R:C 0 7 B26R:A 0 [Edges] 0 {B4R:U -> B5R:G: adjacent_5p upward } 0 1 {B5R:G -> B4R:U: adjacent_3p downward } 0 2 {B4R:U -> B26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B26R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B5R:G -> B6R:C: adjacent_5p upward } 0 5 {B6R:C -> B5R:G: adjacent_3p downward } 0 6 {B5R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B25R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B5R:G -> B26R:A: outward } 0 9 {B26R:A -> B5R:G: outward } 0 10 {B6R:C -> B7R:U: adjacent_5p upward } 0 11 {B7R:U -> B6R:C: adjacent_3p downward } 0 12 {B6R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B24R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B7R:U -> B23R:C: pairing antiparallel trans one_hbond Ws/Bh } 0 15 {B23R:C -> B7R:U: pairing antiparallel trans one_hbond Bh/Ws } 0 16 {B23R:C -> B24R:G: adjacent_5p upward } 0 17 {B24R:G -> B23R:C: adjacent_3p downward } 0 18 {B24R:G -> B25R:C: adjacent_5p upward } 0 19 {B25R:C -> B24R:G: adjacent_3p downward } 0 20 {B25R:C -> B26R:A: adjacent_5p upward } 0 21 {B26R:A -> B25R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B5R:G 0 1 B6R:C 0 2 B7R:U 0 3 B8R:C 0 4 B22R:C 0 5 B23R:C 0 6 B24R:G 0 7 B25R:C 0 [Edges] 0 {B5R:G -> B6R:C: adjacent_5p upward } 0 1 {B6R:C -> B5R:G: adjacent_3p downward } 0 2 {B5R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B25R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B6R:C -> B7R:U: adjacent_5p upward } 0 5 {B7R:U -> B6R:C: adjacent_3p downward } 0 6 {B6R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B24R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B7R:U -> B8R:C: adjacent_5p upward } 0 9 {B8R:C -> B7R:U: adjacent_3p downward } 0 10 {B7R:U -> B23R:C: pairing antiparallel trans one_hbond Ws/Bh } 0 11 {B23R:C -> B7R:U: pairing antiparallel trans one_hbond Bh/Ws } 0 12 {B8R:C -> B22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 13 {B22R:C -> B8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 14 {B22R:C -> B23R:C: adjacent_5p upward } 0 15 {B23R:C -> B22R:C: adjacent_3p downward } 0 16 {B23R:C -> B24R:G: adjacent_5p upward } 0 17 {B24R:G -> B23R:C: adjacent_3p downward } 0 18 {B24R:G -> B25R:C: adjacent_5p upward } 0 19 {B25R:C -> B24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B6R:C 0 1 B7R:U 0 2 B8R:C 0 3 B9R:A 0 4 B21R:A 0 5 B22R:C 0 6 B23R:C 0 7 B24R:G 0 [Edges] 0 {B6R:C -> B7R:U: adjacent_5p upward } 0 1 {B7R:U -> B6R:C: adjacent_3p downward } 0 2 {B6R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B24R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B7R:U -> B8R:C: adjacent_5p upward } 0 5 {B8R:C -> B7R:U: adjacent_3p downward } 0 6 {B7R:U -> B23R:C: pairing antiparallel trans one_hbond Ws/Bh } 0 7 {B23R:C -> B7R:U: pairing antiparallel trans one_hbond Bh/Ws } 0 8 {B8R:C -> B9R:A: adjacent_5p inward } 0 9 {B9R:A -> B8R:C: adjacent_3p inward } 0 10 {B8R:C -> B22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 11 {B22R:C -> B8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 12 {B9R:A -> B21R:A: pairing parallel trans II Hh/Hh } 0 13 {B21R:A -> B9R:A: pairing parallel trans II Hh/Hh } 0 14 {B21R:A -> B22R:C: adjacent_5p upward } 0 15 {B22R:C -> B21R:A: adjacent_3p downward } 0 16 {B22R:C -> B23R:C: adjacent_5p upward } 0 17 {B23R:C -> B22R:C: adjacent_3p downward } 0 18 {B23R:C -> B24R:G: adjacent_5p upward } 0 19 {B24R:G -> B23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B11R:U 0 1 B12R:A 0 2 B13R:U 0 3 B14R:G 0 4 B17R:A 0 5 B18R:A 0 6 B19R:G 0 7 B20R:A 0 [Edges] 0 {B11R:U -> B12R:A: adjacent_5p } 0 1 {B12R:A -> B11R:U: adjacent_3p } 0 2 {B11R:U -> B20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 3 {B20R:A -> B11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 4 {B12R:A -> B13R:U: adjacent_5p upward } 0 5 {B13R:U -> B12R:A: adjacent_3p downward } 0 6 {B12R:A -> B19R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {B19R:G -> B12R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {B12R:A -> B20R:A: outward } 0 9 {B20R:A -> B12R:A: outward } 0 10 {B13R:U -> B14R:G: adjacent_5p upward } 0 11 {B14R:G -> B13R:U: adjacent_3p downward } 0 12 {B13R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B18R:A -> B13R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B14R:G -> B17R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {B17R:A -> B14R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {B14R:G -> B18R:A: outward } 0 17 {B18R:A -> B14R:G: outward } 0 18 {B17R:A -> B18R:A: adjacent_5p } 0 19 {B18R:A -> B17R:A: adjacent_3p } 0 20 {B18R:A -> B19R:G: adjacent_5p upward } 0 21 {B19R:G -> B18R:A: adjacent_3p downward } 0 22 {B19R:G -> B20R:A: adjacent_5p } 0 23 {B20R:A -> B19R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 C3R:G 0 1 C4R:U 0 2 C5R:G 0 3 C6R:C 0 4 C24R:G 0 5 C25R:C 0 6 C26R:A 0 7 C27R:C 0 [Edges] 0 {C3R:G -> C4R:U: adjacent_5p upward } 0 1 {C4R:U -> C3R:G: adjacent_3p downward } 0 2 {C3R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C27R:C -> C3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C4R:U -> C5R:G: adjacent_5p upward } 0 5 {C5R:G -> C4R:U: adjacent_3p downward } 0 6 {C4R:U -> C26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C26R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C5R:G -> C6R:C: adjacent_5p upward } 0 9 {C6R:C -> C5R:G: adjacent_3p downward } 0 10 {C5R:G -> C25R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C25R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C5R:G -> C26R:A: outward } 0 13 {C26R:A -> C5R:G: outward } 0 14 {C6R:C -> C24R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {C24R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {C24R:G -> C25R:C: adjacent_5p upward } 0 17 {C25R:C -> C24R:G: adjacent_3p downward } 0 18 {C25R:C -> C26R:A: adjacent_5p } 0 19 {C26R:A -> C25R:C: adjacent_3p } 0 20 {C26R:A -> C27R:C: adjacent_5p upward } 0 21 {C27R:C -> C26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C5R:G 0 1 C6R:C 0 2 C7R:U 0 3 C8R:C 0 4 C22R:C 0 5 C23R:C 0 6 C24R:G 0 7 C25R:C 0 [Edges] 0 {C5R:G -> C6R:C: adjacent_5p upward } 0 1 {C6R:C -> C5R:G: adjacent_3p downward } 0 2 {C5R:G -> C25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C25R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C6R:C -> C7R:U: adjacent_5p upward } 0 5 {C7R:U -> C6R:C: adjacent_3p downward } 0 6 {C6R:C -> C24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C24R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C7R:U -> C8R:C: adjacent_5p upward } 0 9 {C8R:C -> C7R:U: adjacent_3p downward } 0 10 {C8R:C -> C22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 11 {C22R:C -> C8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 12 {C22R:C -> C23R:C: adjacent_5p upward } 0 13 {C23R:C -> C22R:C: adjacent_3p downward } 0 14 {C23R:C -> C24R:G: adjacent_5p upward } 0 15 {C24R:G -> C23R:C: adjacent_3p downward } 0 16 {C24R:G -> C25R:C: adjacent_5p upward } 0 17 {C25R:C -> C24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 C6R:C 0 1 C7R:U 0 2 C8R:C 0 3 C9R:A 0 4 C21R:A 0 5 C22R:C 0 6 C23R:C 0 7 C24R:G 0 [Edges] 0 {C6R:C -> C7R:U: adjacent_5p upward } 0 1 {C7R:U -> C6R:C: adjacent_3p downward } 0 2 {C6R:C -> C24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C24R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C7R:U -> C8R:C: adjacent_5p upward } 0 5 {C8R:C -> C7R:U: adjacent_3p downward } 0 6 {C8R:C -> C9R:A: adjacent_5p inward } 0 7 {C9R:A -> C8R:C: adjacent_3p inward } 0 8 {C8R:C -> C22R:C: pairing antiparallel trans one_hbond 132 Ss/Hw } 0 9 {C22R:C -> C8R:C: pairing antiparallel trans one_hbond 132 Hw/Ss } 0 10 {C9R:A -> C21R:A: pairing parallel trans II Hh/Hh } 0 11 {C21R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 12 {C21R:A -> C22R:C: adjacent_5p upward } 0 13 {C22R:C -> C21R:A: adjacent_3p downward } 0 14 {C22R:C -> C23R:C: adjacent_5p upward } 0 15 {C23R:C -> C22R:C: adjacent_3p downward } 0 16 {C23R:C -> C24R:G: adjacent_5p upward } 0 17 {C24R:G -> C23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 C11R:U 0 1 C12R:A 0 2 C13R:U 0 3 C14R:G 0 4 C17R:A 0 5 C18R:A 0 6 C19R:G 0 7 C20R:A 0 [Edges] 0 {C11R:U -> C12R:A: adjacent_5p } 0 1 {C12R:A -> C11R:U: adjacent_3p } 0 2 {C11R:U -> C20R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {C20R:A -> C11R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {C12R:A -> C13R:U: adjacent_5p upward } 0 5 {C13R:U -> C12R:A: adjacent_3p downward } 0 6 {C12R:A -> C19R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {C19R:G -> C12R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {C12R:A -> C20R:A: outward } 0 9 {C20R:A -> C12R:A: outward } 0 10 {C13R:U -> C14R:G: adjacent_5p upward } 0 11 {C14R:G -> C13R:U: adjacent_3p downward } 0 12 {C13R:U -> C18R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {C18R:A -> C13R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {C14R:G -> C17R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 15 {C17R:A -> C14R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 16 {C14R:G -> C18R:A: outward } 0 17 {C18R:A -> C14R:G: outward } 0 18 {C17R:A -> C18R:A: adjacent_5p } 0 19 {C18R:A -> C17R:A: adjacent_3p } 0 20 {C18R:A -> C19R:G: adjacent_5p upward } 0 21 {C19R:G -> C18R:A: adjacent_3p downward } 0 22 {C19R:G -> C20R:A: adjacent_5p } 0 23 {C20R:A -> C19R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A2648R:G 0 1 A2649R:C 0 2 A2650R:U 0 3 A2651R:C 0 4 A2669R:G 0 5 A2670R:A 0 6 A2671R:G 0 7 A2672R:U 0 [Edges] 0 {A2648R:G -> A2649R:C: adjacent_5p upward } 0 1 {A2649R:C -> A2648R:G: adjacent_3p downward } 0 2 {A2648R:G -> A2672R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A2672R:U -> A2648R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A2649R:C -> A2650R:U: adjacent_5p } 0 5 {A2650R:U -> A2649R:C: adjacent_3p } 0 6 {A2649R:C -> A2671R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2671R:G -> A2649R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2650R:U -> A2651R:C: adjacent_5p upward } 0 9 {A2651R:C -> A2650R:U: adjacent_3p downward } 0 10 {A2650R:U -> A2670R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A2670R:A -> A2650R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A2651R:C -> A2669R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2669R:G -> A2651R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2669R:G -> A2670R:A: adjacent_5p upward } 0 15 {A2670R:A -> A2669R:G: adjacent_3p downward } 0 16 {A2670R:A -> A2671R:G: adjacent_5p upward } 0 17 {A2671R:G -> A2670R:A: adjacent_3p downward } 0 18 {A2671R:G -> A2672R:U: adjacent_5p upward } 0 19 {A2672R:U -> A2671R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2649R:C 0 1 A2650R:U 0 2 A2651R:C 0 3 A2652R:C 0 4 A2668R:G 0 5 A2669R:G 0 6 A2670R:A 0 7 A2671R:G 0 [Edges] 0 {A2649R:C -> A2650R:U: adjacent_5p } 0 1 {A2650R:U -> A2649R:C: adjacent_3p } 0 2 {A2649R:C -> A2671R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2671R:G -> A2649R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2650R:U -> A2651R:C: adjacent_5p upward } 0 5 {A2651R:C -> A2650R:U: adjacent_3p downward } 0 6 {A2650R:U -> A2670R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A2670R:A -> A2650R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A2651R:C -> A2652R:C: adjacent_5p } 0 9 {A2652R:C -> A2651R:C: adjacent_3p } 0 10 {A2651R:C -> A2669R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A2669R:G -> A2651R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A2652R:C -> A2668R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2668R:G -> A2652R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2668R:G -> A2669R:G: adjacent_5p upward } 0 15 {A2669R:G -> A2668R:G: adjacent_3p downward } 0 16 {A2669R:G -> A2670R:A: adjacent_5p upward } 0 17 {A2670R:A -> A2669R:G: adjacent_3p downward } 0 18 {A2670R:A -> A2671R:G: adjacent_5p upward } 0 19 {A2671R:G -> A2670R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2656R:U 0 1 A2657R:A 0 2 A2658R:C 0 3 A2659R:G 0 4 A2662R:A 0 5 A2663R:G 0 6 A2664R:G 0 7 A2665R:A 0 [Edges] 0 {A2656R:U -> A2657R:A: adjacent_5p } 0 1 {A2657R:A -> A2656R:U: adjacent_3p } 0 2 {A2656R:U -> A2665R:A: pairing antiparallel trans XXIV Ww/Hh } 0 3 {A2665R:A -> A2656R:U: pairing antiparallel trans XXIV Hh/Ww } 0 4 {A2657R:A -> A2658R:C: adjacent_5p upward } 0 5 {A2658R:C -> A2657R:A: adjacent_3p downward } 0 6 {A2657R:A -> A2664R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {A2664R:G -> A2657R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {A2657R:A -> A2665R:A: outward } 0 9 {A2665R:A -> A2657R:A: outward } 0 10 {A2658R:C -> A2659R:G: adjacent_5p upward } 0 11 {A2659R:G -> A2658R:C: adjacent_3p downward } 0 12 {A2658R:C -> A2663R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A2663R:G -> A2658R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A2659R:G -> A2662R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 15 {A2662R:A -> A2659R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 16 {A2659R:G -> A2663R:G: outward } 0 17 {A2663R:G -> A2659R:G: outward } 0 18 {A2662R:A -> A2663R:G: adjacent_5p } 0 19 {A2663R:G -> A2662R:A: adjacent_3p } 0 20 {A2663R:G -> A2664R:G: adjacent_5p upward } 0 21 {A2664R:G -> A2663R:G: adjacent_3p downward } 0 22 {A2664R:G -> A2665R:A: adjacent_5p } 0 23 {A2665R:A -> A2664R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:G 0 2 A7R:U 0 3 A8R:U 0 4 B24R:C 0 5 B25R:G 0 6 B26R:C 0 7 B27R:U 0 [Edges] 0 {A5R:A -> A6R:G: adjacent_5p upward } 0 1 {A6R:G -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> B27R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B27R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:G -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> B26R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B26R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:U -> A8R:U: adjacent_5p } 0 9 {A8R:U -> A7R:U: adjacent_3p } 0 10 {A7R:U -> B25R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B25R:G -> A7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A8R:U -> B24R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {B24R:C -> A8R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {B24R:C -> B25R:G: adjacent_5p upward } 0 15 {B25R:G -> B24R:C: adjacent_3p downward } 0 16 {B25R:G -> B26R:C: adjacent_5p upward } 0 17 {B26R:C -> B25R:G: adjacent_3p downward } 0 18 {B26R:C -> B27R:U: adjacent_5p upward } 0 19 {B27R:U -> B26R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:U 0 2 A8R:U 0 3 A9R:C 0 4 B23R:U 0 5 B24R:C 0 6 B25R:G 0 7 B26R:C 0 [Edges] 0 {A6R:G -> A7R:U: adjacent_5p upward } 0 1 {A7R:U -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> B26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B26R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:U -> A8R:U: adjacent_5p } 0 5 {A8R:U -> A7R:U: adjacent_3p } 0 6 {A7R:U -> B25R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B25R:G -> A7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A8R:U -> A9R:C: adjacent_5p upward } 0 9 {A9R:C -> A8R:U: adjacent_3p downward } 0 10 {A8R:U -> B24R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {B24R:C -> A8R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {A9R:C -> B23R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {B23R:U -> A9R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {B23R:U -> B24R:C: adjacent_5p upward } 0 15 {B24R:C -> B23R:U: adjacent_3p downward } 0 16 {B24R:C -> B25R:G: adjacent_5p upward } 0 17 {B25R:G -> B24R:C: adjacent_3p downward } 0 18 {B25R:G -> B26R:C: adjacent_5p upward } 0 19 {B26R:C -> B25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:U 0 1 A8R:U 0 2 A9R:C 0 3 A10R:G 0 4 B22R:U 0 5 B23R:U 0 6 B24R:C 0 7 B25R:G 0 [Edges] 0 {A7R:U -> A8R:U: adjacent_5p } 0 1 {A8R:U -> A7R:U: adjacent_3p } 0 2 {A7R:U -> B25R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B25R:G -> A7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A8R:U -> A9R:C: adjacent_5p upward } 0 5 {A9R:C -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> B24R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {B24R:C -> A8R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A9R:C -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:C: adjacent_3p downward } 0 10 {A9R:C -> B23R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {B23R:U -> A9R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {A10R:G -> B22R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B22R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {B22R:U -> B23R:U: adjacent_5p } 0 15 {B23R:U -> B22R:U: adjacent_3p } 0 16 {B23R:U -> B24R:C: adjacent_5p upward } 0 17 {B24R:C -> B23R:U: adjacent_3p downward } 0 18 {B24R:C -> B25R:G: adjacent_5p upward } 0 19 {B25R:G -> B24R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:C 0 2 A10R:G 0 3 A11R:C 0 4 B21R:G 0 5 B22R:U 0 6 B23R:U 0 7 B24R:C 0 [Edges] 0 {A8R:U -> A9R:C: adjacent_5p upward } 0 1 {A9R:C -> A8R:U: adjacent_3p downward } 0 2 {A8R:U -> B24R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B24R:C -> A8R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A9R:C -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:C: adjacent_3p downward } 0 6 {A9R:C -> B23R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {B23R:U -> A9R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A10R:G -> A11R:C: adjacent_5p upward } 0 9 {A11R:C -> A10R:G: adjacent_3p downward } 0 10 {A10R:G -> B22R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B22R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A11R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B21R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B21R:G -> B22R:U: adjacent_5p upward } 0 15 {B22R:U -> B21R:G: adjacent_3p downward } 0 16 {B22R:U -> B23R:U: adjacent_5p } 0 17 {B23R:U -> B22R:U: adjacent_3p } 0 18 {B23R:U -> B24R:C: adjacent_5p upward } 0 19 {B24R:C -> B23R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A9R:C 0 1 A10R:G 0 2 A11R:C 0 3 A12R:U 0 4 B20R:A 0 5 B21R:G 0 6 B22R:U 0 7 B23R:U 0 [Edges] 0 {A9R:C -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:C: adjacent_3p downward } 0 2 {A9R:C -> B23R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B23R:U -> A9R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A10R:G -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:G: adjacent_3p downward } 0 6 {A10R:G -> B22R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B22R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A11R:C -> A12R:U: adjacent_5p upward } 0 9 {A12R:U -> A11R:C: adjacent_3p downward } 0 10 {A11R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B21R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:U -> B20R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B20R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B20R:A -> B21R:G: adjacent_5p upward } 0 15 {B21R:G -> B20R:A: adjacent_3p downward } 0 16 {B21R:G -> B22R:U: adjacent_5p upward } 0 17 {B22R:U -> B21R:G: adjacent_3p downward } 0 18 {B22R:U -> B23R:U: adjacent_5p } 0 19 {B23R:U -> B22R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C35R:A 0 1 C36R:G 0 2 C37R:U 0 3 C38R:U 0 4 D54R:C 0 5 D55R:G 0 6 D56R:C 0 7 D57R:U 0 [Edges] 0 {C35R:A -> C36R:G: adjacent_5p upward } 0 1 {C36R:G -> C35R:A: adjacent_3p downward } 0 2 {C35R:A -> D57R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D57R:U -> C35R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C36R:G -> C37R:U: adjacent_5p upward } 0 5 {C37R:U -> C36R:G: adjacent_3p downward } 0 6 {C36R:G -> D56R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D56R:C -> C36R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C37R:U -> C38R:U: adjacent_5p } 0 9 {C38R:U -> C37R:U: adjacent_3p } 0 10 {C37R:U -> D55R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {D55R:G -> C37R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {C38R:U -> D54R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {D54R:C -> C38R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {D54R:C -> D55R:G: adjacent_5p upward } 0 15 {D55R:G -> D54R:C: adjacent_3p downward } 0 16 {D55R:G -> D56R:C: adjacent_5p upward } 0 17 {D56R:C -> D55R:G: adjacent_3p downward } 0 18 {D56R:C -> D57R:U: adjacent_5p } 0 19 {D57R:U -> D56R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C36R:G 0 1 C37R:U 0 2 C38R:U 0 3 C39R:C 0 4 D53R:U 0 5 D54R:C 0 6 D55R:G 0 7 D56R:C 0 [Edges] 0 {C36R:G -> C37R:U: adjacent_5p upward } 0 1 {C37R:U -> C36R:G: adjacent_3p downward } 0 2 {C36R:G -> D56R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D56R:C -> C36R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C37R:U -> C38R:U: adjacent_5p } 0 5 {C38R:U -> C37R:U: adjacent_3p } 0 6 {C37R:U -> D55R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {D55R:G -> C37R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {C38R:U -> C39R:C: adjacent_5p upward } 0 9 {C39R:C -> C38R:U: adjacent_3p downward } 0 10 {C38R:U -> D54R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {D54R:C -> C38R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {C39R:C -> D53R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {D53R:U -> C39R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {D53R:U -> D54R:C: adjacent_5p upward } 0 15 {D54R:C -> D53R:U: adjacent_3p downward } 0 16 {D54R:C -> D55R:G: adjacent_5p upward } 0 17 {D55R:G -> D54R:C: adjacent_3p downward } 0 18 {D55R:G -> D56R:C: adjacent_5p upward } 0 19 {D56R:C -> D55R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C37R:U 0 1 C38R:U 0 2 C39R:C 0 3 C40R:G 0 4 D52R:U 0 5 D53R:U 0 6 D54R:C 0 7 D55R:G 0 [Edges] 0 {C37R:U -> C38R:U: adjacent_5p } 0 1 {C38R:U -> C37R:U: adjacent_3p } 0 2 {C37R:U -> D55R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {D55R:G -> C37R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {C38R:U -> C39R:C: adjacent_5p upward } 0 5 {C39R:C -> C38R:U: adjacent_3p downward } 0 6 {C38R:U -> D54R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {D54R:C -> C38R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {C39R:C -> C40R:G: adjacent_5p upward } 0 9 {C40R:G -> C39R:C: adjacent_3p downward } 0 10 {C39R:C -> D53R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {D53R:U -> C39R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {C40R:G -> D52R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {D52R:U -> C40R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {D52R:U -> D53R:U: adjacent_5p } 0 15 {D53R:U -> D52R:U: adjacent_3p } 0 16 {D53R:U -> D54R:C: adjacent_5p upward } 0 17 {D54R:C -> D53R:U: adjacent_3p downward } 0 18 {D54R:C -> D55R:G: adjacent_5p upward } 0 19 {D55R:G -> D54R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C38R:U 0 1 C39R:C 0 2 C40R:G 0 3 C41R:C 0 4 D51R:G 0 5 D52R:U 0 6 D53R:U 0 7 D54R:C 0 [Edges] 0 {C38R:U -> C39R:C: adjacent_5p upward } 0 1 {C39R:C -> C38R:U: adjacent_3p downward } 0 2 {C38R:U -> D54R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {D54R:C -> C38R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {C39R:C -> C40R:G: adjacent_5p upward } 0 5 {C40R:G -> C39R:C: adjacent_3p downward } 0 6 {C39R:C -> D53R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {D53R:U -> C39R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {C40R:G -> C41R:C: adjacent_5p upward } 0 9 {C41R:C -> C40R:G: adjacent_3p downward } 0 10 {C40R:G -> D52R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {D52R:U -> C40R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {C41R:C -> D51R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D51R:G -> C41R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D51R:G -> D52R:U: adjacent_5p upward } 0 15 {D52R:U -> D51R:G: adjacent_3p downward } 0 16 {D52R:U -> D53R:U: adjacent_5p } 0 17 {D53R:U -> D52R:U: adjacent_3p } 0 18 {D53R:U -> D54R:C: adjacent_5p upward } 0 19 {D54R:C -> D53R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C39R:C 0 1 C40R:G 0 2 C41R:C 0 3 C42R:U 0 4 D50R:A 0 5 D51R:G 0 6 D52R:U 0 7 D53R:U 0 [Edges] 0 {C39R:C -> C40R:G: adjacent_5p upward } 0 1 {C40R:G -> C39R:C: adjacent_3p downward } 0 2 {C39R:C -> D53R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {D53R:U -> C39R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {C40R:G -> C41R:C: adjacent_5p upward } 0 5 {C41R:C -> C40R:G: adjacent_3p downward } 0 6 {C40R:G -> D52R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {D52R:U -> C40R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {C41R:C -> C42R:U: adjacent_5p } 0 9 {C42R:U -> C41R:C: adjacent_3p } 0 10 {C41R:C -> D51R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D51R:G -> C41R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C42R:U -> D50R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {D50R:A -> C42R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {D50R:A -> D51R:G: adjacent_5p upward } 0 15 {D51R:G -> D50R:A: adjacent_3p downward } 0 16 {D51R:G -> D52R:U: adjacent_5p upward } 0 17 {D52R:U -> D51R:G: adjacent_3p downward } 0 18 {D52R:U -> D53R:U: adjacent_5p } 0 19 {D53R:U -> D52R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E65R:A 0 1 E66R:G 0 2 E67R:U 0 3 E68R:U 0 4 F84R:C 0 5 F85R:G 0 6 F86R:C 0 7 F87R:U 0 [Edges] 0 {E65R:A -> E66R:G: adjacent_5p upward } 0 1 {E66R:G -> E65R:A: adjacent_3p downward } 0 2 {E65R:A -> F87R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {F87R:U -> E65R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {E66R:G -> E67R:U: adjacent_5p upward } 0 5 {E67R:U -> E66R:G: adjacent_3p downward } 0 6 {E66R:G -> F86R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {F86R:C -> E66R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E67R:U -> E68R:U: adjacent_5p } 0 9 {E68R:U -> E67R:U: adjacent_3p } 0 10 {E67R:U -> F85R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {F85R:G -> E67R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {E68R:U -> F84R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {F84R:C -> E68R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {F84R:C -> F85R:G: adjacent_5p upward } 0 15 {F85R:G -> F84R:C: adjacent_3p downward } 0 16 {F85R:G -> F86R:C: adjacent_5p upward } 0 17 {F86R:C -> F85R:G: adjacent_3p downward } 0 18 {F86R:C -> F87R:U: adjacent_5p upward } 0 19 {F87R:U -> F86R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E67R:U 0 1 E68R:U 0 2 E69R:C 0 3 E70R:G 0 4 F82R:U 0 5 F83R:U 0 6 F84R:C 0 7 F85R:G 0 [Edges] 0 {E67R:U -> E68R:U: adjacent_5p } 0 1 {E68R:U -> E67R:U: adjacent_3p } 0 2 {E67R:U -> F85R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {F85R:G -> E67R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {E68R:U -> E69R:C: adjacent_5p upward } 0 5 {E69R:C -> E68R:U: adjacent_3p downward } 0 6 {E68R:U -> F84R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {F84R:C -> E68R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {E69R:C -> E70R:G: adjacent_5p upward } 0 9 {E70R:G -> E69R:C: adjacent_3p downward } 0 10 {E70R:G -> F82R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {F82R:U -> E70R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {F82R:U -> F83R:U: adjacent_5p } 0 13 {F83R:U -> F82R:U: adjacent_3p } 0 14 {F83R:U -> F84R:C: adjacent_5p } 0 15 {F84R:C -> F83R:U: adjacent_3p } 0 16 {F84R:C -> F85R:G: adjacent_5p upward } 0 17 {F85R:G -> F84R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 E68R:U 0 1 E69R:C 0 2 E70R:G 0 3 E71R:C 0 4 F81R:G 0 5 F82R:U 0 6 F83R:U 0 7 F84R:C 0 [Edges] 0 {E68R:U -> E69R:C: adjacent_5p upward } 0 1 {E69R:C -> E68R:U: adjacent_3p downward } 0 2 {E68R:U -> F84R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {F84R:C -> E68R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {E69R:C -> E70R:G: adjacent_5p upward } 0 5 {E70R:G -> E69R:C: adjacent_3p downward } 0 6 {E70R:G -> E71R:C: adjacent_5p upward } 0 7 {E71R:C -> E70R:G: adjacent_3p downward } 0 8 {E70R:G -> F82R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {F82R:U -> E70R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {E71R:C -> F81R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {F81R:G -> E71R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {F81R:G -> F82R:U: adjacent_5p upward } 0 13 {F82R:U -> F81R:G: adjacent_3p downward } 0 14 {F82R:U -> F83R:U: adjacent_5p } 0 15 {F83R:U -> F82R:U: adjacent_3p } 0 16 {F83R:U -> F84R:C: adjacent_5p } 0 17 {F84R:C -> F83R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:A 0 2 A13R:G 0 3 A14R:C 0 4 B25R:G 0 5 B26R:C 0 6 B27R:U 0 7 B28R:A 0 [Edges] 0 {A11R:U -> A12R:A: adjacent_5p upward } 0 1 {A12R:A -> A11R:U: adjacent_3p downward } 0 2 {A11R:U -> B28R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B28R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A12R:A -> A13R:G: adjacent_5p upward } 0 5 {A13R:G -> A12R:A: adjacent_3p downward } 0 6 {A12R:A -> B27R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B27R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A12R:A -> B28R:A: outward } 0 9 {B28R:A -> A12R:A: outward } 0 10 {A13R:G -> A14R:C: adjacent_5p upward } 0 11 {A14R:C -> A13R:G: adjacent_3p downward } 0 12 {A13R:G -> B26R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B26R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:C -> B25R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B25R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B25R:G -> B26R:C: adjacent_5p upward } 0 17 {B26R:C -> B25R:G: adjacent_3p downward } 0 18 {B26R:C -> B27R:U: adjacent_5p upward } 0 19 {B27R:U -> B26R:C: adjacent_3p downward } 0 20 {B27R:U -> B28R:A: adjacent_5p upward } 0 21 {B28R:A -> B27R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A12R:A 0 1 A13R:G 0 2 A14R:C 0 3 A15R:G 0 4 B24R:C 0 5 B25R:G 0 6 B26R:C 0 7 B27R:U 0 [Edges] 0 {A12R:A -> A13R:G: adjacent_5p upward } 0 1 {A13R:G -> A12R:A: adjacent_3p downward } 0 2 {A12R:A -> B27R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B27R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A13R:G -> A14R:C: adjacent_5p upward } 0 5 {A14R:C -> A13R:G: adjacent_3p downward } 0 6 {A13R:G -> B26R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B26R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:C -> A15R:G: adjacent_5p upward } 0 9 {A15R:G -> A14R:C: adjacent_3p downward } 0 10 {A14R:C -> B25R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B25R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A15R:G -> B24R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B24R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A15R:G -> B25R:G: outward } 0 15 {B25R:G -> A15R:G: outward } 0 16 {B24R:C -> B25R:G: adjacent_5p } 0 17 {B25R:G -> B24R:C: adjacent_3p } 0 18 {B25R:G -> B26R:C: adjacent_5p upward } 0 19 {B26R:C -> B25R:G: adjacent_3p downward } 0 20 {B26R:C -> B27R:U: adjacent_5p upward } 0 21 {B27R:U -> B26R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A13R:G 0 1 A14R:C 0 2 A15R:G 0 3 A16R:G 0 4 B23R:C 0 5 B24R:C 0 6 B25R:G 0 7 B26R:C 0 [Edges] 0 {A13R:G -> A14R:C: adjacent_5p upward } 0 1 {A14R:C -> A13R:G: adjacent_3p downward } 0 2 {A13R:G -> B26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B26R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A14R:C -> A15R:G: adjacent_5p upward } 0 5 {A15R:G -> A14R:C: adjacent_3p downward } 0 6 {A14R:C -> B25R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B25R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A15R:G -> A16R:G: adjacent_5p upward } 0 9 {A16R:G -> A15R:G: adjacent_3p downward } 0 10 {A15R:G -> B24R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B24R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A15R:G -> B25R:G: outward } 0 13 {B25R:G -> A15R:G: outward } 0 14 {A16R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B23R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B23R:C -> B24R:C: adjacent_5p } 0 17 {B24R:C -> B23R:C: adjacent_3p } 0 18 {B24R:C -> B25R:G: adjacent_5p } 0 19 {B25R:G -> B24R:C: adjacent_3p } 0 20 {B25R:G -> B26R:C: adjacent_5p upward } 0 21 {B26R:C -> B25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A14R:C 0 1 A15R:G 0 2 A16R:G 0 3 A17R:U 0 4 B22R:A 0 5 B23R:C 0 6 B24R:C 0 7 B25R:G 0 [Edges] 0 {A14R:C -> A15R:G: adjacent_5p upward } 0 1 {A15R:G -> A14R:C: adjacent_3p downward } 0 2 {A14R:C -> B25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B25R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A15R:G -> A16R:G: adjacent_5p upward } 0 5 {A16R:G -> A15R:G: adjacent_3p downward } 0 6 {A15R:G -> B24R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B24R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A15R:G -> B25R:G: outward } 0 9 {B25R:G -> A15R:G: outward } 0 10 {A16R:G -> A17R:U: adjacent_5p upward } 0 11 {A17R:U -> A16R:G: adjacent_3p downward } 0 12 {A16R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B23R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A17R:U -> B22R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B22R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B22R:A -> B23R:C: adjacent_5p upward } 0 17 {B23R:C -> B22R:A: adjacent_3p downward } 0 18 {B23R:C -> B24R:C: adjacent_5p } 0 19 {B24R:C -> B23R:C: adjacent_3p } 0 20 {B24R:C -> B25R:G: adjacent_5p } 0 21 {B25R:G -> B24R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A15R:G 0 1 A16R:G 0 2 A17R:U 0 3 A18R:G 0 4 B21R:C 0 5 B22R:A 0 6 B23R:C 0 7 B24R:C 0 [Edges] 0 {A15R:G -> A16R:G: adjacent_5p upward } 0 1 {A16R:G -> A15R:G: adjacent_3p downward } 0 2 {A15R:G -> B24R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B24R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A16R:G -> A17R:U: adjacent_5p upward } 0 5 {A17R:U -> A16R:G: adjacent_3p downward } 0 6 {A16R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B23R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A17R:U -> A18R:G: adjacent_5p } 0 9 {A18R:G -> A17R:U: adjacent_3p } 0 10 {A17R:U -> B22R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B22R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A18R:G -> B21R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B21R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A18R:G -> B22R:A: outward } 0 15 {B22R:A -> A18R:G: outward } 0 16 {B21R:C -> B22R:A: adjacent_5p upward } 0 17 {B22R:A -> B21R:C: adjacent_3p downward } 0 18 {B22R:A -> B23R:C: adjacent_5p upward } 0 19 {B23R:C -> B22R:A: adjacent_3p downward } 0 20 {B23R:C -> B24R:C: adjacent_5p } 0 21 {B24R:C -> B23R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C102R:C 0 1 C103R:A 0 2 C104R:C 0 3 C105R:C 0 4 D134R:G 0 5 D135R:G 0 6 D136R:U 0 7 D137R:G 0 [Edges] 0 {C102R:C -> C103R:A: adjacent_5p upward } 0 1 {C103R:A -> C102R:C: adjacent_3p downward } 0 2 {C102R:C -> D137R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D137R:G -> C102R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C103R:A -> C104R:C: adjacent_5p upward } 0 5 {C104R:C -> C103R:A: adjacent_3p downward } 0 6 {C103R:A -> D136R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D136R:U -> C103R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C103R:A -> D137R:G: outward } 0 9 {D137R:G -> C103R:A: outward } 0 10 {C104R:C -> C105R:C: adjacent_5p upward } 0 11 {C105R:C -> C104R:C: adjacent_3p downward } 0 12 {C104R:C -> D135R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D135R:G -> C104R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C105R:C -> D134R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D134R:G -> C105R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D134R:G -> D135R:G: adjacent_5p upward } 0 17 {D135R:G -> D134R:G: adjacent_3p downward } 0 18 {D135R:G -> D136R:U: adjacent_5p upward } 0 19 {D136R:U -> D135R:G: adjacent_3p downward } 0 20 {D136R:U -> D137R:G: adjacent_5p upward } 0 21 {D137R:G -> D136R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C103R:A 0 1 C104R:C 0 2 C105R:C 0 3 C106R:G 0 4 D133R:C 0 5 D134R:G 0 6 D135R:G 0 7 D136R:U 0 [Edges] 0 {C103R:A -> C104R:C: adjacent_5p upward } 0 1 {C104R:C -> C103R:A: adjacent_3p downward } 0 2 {C103R:A -> D136R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D136R:U -> C103R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C104R:C -> C105R:C: adjacent_5p upward } 0 5 {C105R:C -> C104R:C: adjacent_3p downward } 0 6 {C104R:C -> D135R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D135R:G -> C104R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C105R:C -> C106R:G: adjacent_5p } 0 9 {C106R:G -> C105R:C: adjacent_3p } 0 10 {C105R:C -> D134R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D134R:G -> C105R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C106R:G -> D133R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D133R:C -> C106R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C106R:G -> D134R:G: outward } 0 15 {D134R:G -> C106R:G: outward } 0 16 {D133R:C -> D134R:G: adjacent_5p upward } 0 17 {D134R:G -> D133R:C: adjacent_3p downward } 0 18 {D134R:G -> D135R:G: adjacent_5p upward } 0 19 {D135R:G -> D134R:G: adjacent_3p downward } 0 20 {D135R:G -> D136R:U: adjacent_5p upward } 0 21 {D136R:U -> D135R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C104R:C 0 1 C105R:C 0 2 C106R:G 0 3 C107R:U 0 4 D132R:A 0 5 D133R:C 0 6 D134R:G 0 7 D135R:G 0 [Edges] 0 {C104R:C -> C105R:C: adjacent_5p upward } 0 1 {C105R:C -> C104R:C: adjacent_3p downward } 0 2 {C104R:C -> D135R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D135R:G -> C104R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C105R:C -> C106R:G: adjacent_5p } 0 5 {C106R:G -> C105R:C: adjacent_3p } 0 6 {C105R:C -> D134R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D134R:G -> C105R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C106R:G -> C107R:U: adjacent_5p upward } 0 9 {C107R:U -> C106R:G: adjacent_3p downward } 0 10 {C106R:G -> D133R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D133R:C -> C106R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C106R:G -> D134R:G: outward } 0 13 {D134R:G -> C106R:G: outward } 0 14 {C107R:U -> D132R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {D132R:A -> C107R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {D132R:A -> D133R:C: adjacent_5p upward } 0 17 {D133R:C -> D132R:A: adjacent_3p downward } 0 18 {D133R:C -> D134R:G: adjacent_5p upward } 0 19 {D134R:G -> D133R:C: adjacent_3p downward } 0 20 {D134R:G -> D135R:G: adjacent_5p upward } 0 21 {D135R:G -> D134R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C105R:C 0 1 C106R:G 0 2 C107R:U 0 3 C108R:U 0 4 D131R:A 0 5 D132R:A 0 6 D133R:C 0 7 D134R:G 0 [Edges] 0 {C105R:C -> C106R:G: adjacent_5p } 0 1 {C106R:G -> C105R:C: adjacent_3p } 0 2 {C105R:C -> D134R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D134R:G -> C105R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C106R:G -> C107R:U: adjacent_5p upward } 0 5 {C107R:U -> C106R:G: adjacent_3p downward } 0 6 {C106R:G -> D133R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D133R:C -> C106R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C106R:G -> D134R:G: outward } 0 9 {D134R:G -> C106R:G: outward } 0 10 {C107R:U -> C108R:U: adjacent_5p upward } 0 11 {C108R:U -> C107R:U: adjacent_3p downward } 0 12 {C107R:U -> D132R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {D132R:A -> C107R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {C108R:U -> D131R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {D131R:A -> C108R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {D131R:A -> D132R:A: adjacent_5p upward } 0 17 {D132R:A -> D131R:A: adjacent_3p downward } 0 18 {D132R:A -> D133R:C: adjacent_5p upward } 0 19 {D133R:C -> D132R:A: adjacent_3p downward } 0 20 {D133R:C -> D134R:G: adjacent_5p upward } 0 21 {D134R:G -> D133R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C106R:G 0 1 C107R:U 0 2 C108R:U 0 3 C109R:G 0 4 D130R:C 0 5 D131R:A 0 6 D132R:A 0 7 D133R:C 0 [Edges] 0 {C106R:G -> C107R:U: adjacent_5p upward } 0 1 {C107R:U -> C106R:G: adjacent_3p downward } 0 2 {C106R:G -> D133R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D133R:C -> C106R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C107R:U -> C108R:U: adjacent_5p upward } 0 5 {C108R:U -> C107R:U: adjacent_3p downward } 0 6 {C107R:U -> D132R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D132R:A -> C107R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C108R:U -> C109R:G: adjacent_5p } 0 9 {C109R:G -> C108R:U: adjacent_3p } 0 10 {C108R:U -> D131R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D131R:A -> C108R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C109R:G -> D130R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D130R:C -> C109R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C109R:G -> D131R:A: outward } 0 15 {D131R:A -> C109R:G: outward } 0 16 {D130R:C -> D131R:A: adjacent_5p upward } 0 17 {D131R:A -> D130R:C: adjacent_3p downward } 0 18 {D131R:A -> D132R:A: adjacent_5p upward } 0 19 {D132R:A -> D131R:A: adjacent_3p downward } 0 20 {D132R:A -> D133R:C: adjacent_5p upward } 0 21 {D133R:C -> D132R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C107R:U 0 1 C108R:U 0 2 C109R:G 0 3 C110R:G 0 4 D129R:C 0 5 D130R:C 0 6 D131R:A 0 7 D132R:A 0 [Edges] 0 {C107R:U -> C108R:U: adjacent_5p upward } 0 1 {C108R:U -> C107R:U: adjacent_3p downward } 0 2 {C107R:U -> D132R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D132R:A -> C107R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C108R:U -> C109R:G: adjacent_5p } 0 5 {C109R:G -> C108R:U: adjacent_3p } 0 6 {C108R:U -> D131R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D131R:A -> C108R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C109R:G -> C110R:G: adjacent_5p upward } 0 9 {C110R:G -> C109R:G: adjacent_3p downward } 0 10 {C109R:G -> D130R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D130R:C -> C109R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C109R:G -> D131R:A: outward } 0 13 {D131R:A -> C109R:G: outward } 0 14 {C110R:G -> D129R:C: pairing antiparallel cis Ww/Ww } 0 15 {D129R:C -> C110R:G: pairing antiparallel cis Ww/Ww } 0 16 {D129R:C -> D130R:C: adjacent_5p upward } 0 17 {D130R:C -> D129R:C: adjacent_3p downward } 0 18 {D130R:C -> D131R:A: adjacent_5p upward } 0 19 {D131R:A -> D130R:C: adjacent_3p downward } 0 20 {D131R:A -> D132R:A: adjacent_5p upward } 0 21 {D132R:A -> D131R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C108R:U 0 1 C109R:G 0 2 C110R:G 0 3 C111R:U 0 4 D128R:A 0 5 D129R:C 0 6 D130R:C 0 7 D131R:A 0 [Edges] 0 {C108R:U -> C109R:G: adjacent_5p } 0 1 {C109R:G -> C108R:U: adjacent_3p } 0 2 {C108R:U -> D131R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D131R:A -> C108R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C109R:G -> C110R:G: adjacent_5p upward } 0 5 {C110R:G -> C109R:G: adjacent_3p downward } 0 6 {C109R:G -> D130R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D130R:C -> C109R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C109R:G -> D131R:A: outward } 0 9 {D131R:A -> C109R:G: outward } 0 10 {C110R:G -> C111R:U: adjacent_5p upward } 0 11 {C111R:U -> C110R:G: adjacent_3p downward } 0 12 {C110R:G -> D129R:C: pairing antiparallel cis Ww/Ww } 0 13 {D129R:C -> C110R:G: pairing antiparallel cis Ww/Ww } 0 14 {C111R:U -> D128R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {D128R:A -> C111R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {D128R:A -> D129R:C: adjacent_5p upward } 0 17 {D129R:C -> D128R:A: adjacent_3p downward } 0 18 {D129R:C -> D130R:C: adjacent_5p upward } 0 19 {D130R:C -> D129R:C: adjacent_3p downward } 0 20 {D130R:C -> D131R:A: adjacent_5p upward } 0 21 {D131R:A -> D130R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C109R:G 0 1 C110R:G 0 2 C111R:U 0 3 C112R:A 0 4 D127R:U 0 5 D128R:A 0 6 D129R:C 0 7 D130R:C 0 [Edges] 0 {C109R:G -> C110R:G: adjacent_5p upward } 0 1 {C110R:G -> C109R:G: adjacent_3p downward } 0 2 {C109R:G -> D130R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D130R:C -> C109R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C110R:G -> C111R:U: adjacent_5p upward } 0 5 {C111R:U -> C110R:G: adjacent_3p downward } 0 6 {C110R:G -> D129R:C: pairing antiparallel cis Ww/Ww } 0 7 {D129R:C -> C110R:G: pairing antiparallel cis Ww/Ww } 0 8 {C111R:U -> C112R:A: adjacent_5p upward } 0 9 {C112R:A -> C111R:U: adjacent_3p downward } 0 10 {C111R:U -> D128R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D128R:A -> C111R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C112R:A -> D127R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {D127R:U -> C112R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {C112R:A -> D128R:A: outward } 0 15 {D128R:A -> C112R:A: outward } 0 16 {D127R:U -> D128R:A: adjacent_5p } 0 17 {D128R:A -> D127R:U: adjacent_3p } 0 18 {D128R:A -> D129R:C: adjacent_5p upward } 0 19 {D129R:C -> D128R:A: adjacent_3p downward } 0 20 {D129R:C -> D130R:C: adjacent_5p upward } 0 21 {D130R:C -> D129R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C110R:G 0 1 C111R:U 0 2 C112R:A 0 3 C113R:G 0 4 D126R:C 0 5 D127R:U 0 6 D128R:A 0 7 D129R:C 0 [Edges] 0 {C110R:G -> C111R:U: adjacent_5p upward } 0 1 {C111R:U -> C110R:G: adjacent_3p downward } 0 2 {C110R:G -> D129R:C: pairing antiparallel cis Ww/Ww } 0 3 {D129R:C -> C110R:G: pairing antiparallel cis Ww/Ww } 0 4 {C111R:U -> C112R:A: adjacent_5p upward } 0 5 {C112R:A -> C111R:U: adjacent_3p downward } 0 6 {C111R:U -> D128R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D128R:A -> C111R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C112R:A -> C113R:G: adjacent_5p upward } 0 9 {C113R:G -> C112R:A: adjacent_3p downward } 0 10 {C112R:A -> D127R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D127R:U -> C112R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C112R:A -> D128R:A: outward } 0 13 {D128R:A -> C112R:A: outward } 0 14 {C113R:G -> D126R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D126R:C -> C113R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D126R:C -> D127R:U: adjacent_5p } 0 17 {D127R:U -> D126R:C: adjacent_3p } 0 18 {D127R:U -> D128R:A: adjacent_5p } 0 19 {D128R:A -> D127R:U: adjacent_3p } 0 20 {D128R:A -> D129R:C: adjacent_5p upward } 0 21 {D129R:C -> D128R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C111R:U 0 1 C112R:A 0 2 C113R:G 0 3 C114R:C 0 4 D125R:G 0 5 D126R:C 0 6 D127R:U 0 7 D128R:A 0 [Edges] 0 {C111R:U -> C112R:A: adjacent_5p upward } 0 1 {C112R:A -> C111R:U: adjacent_3p downward } 0 2 {C111R:U -> D128R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D128R:A -> C111R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C112R:A -> C113R:G: adjacent_5p upward } 0 5 {C113R:G -> C112R:A: adjacent_3p downward } 0 6 {C112R:A -> D127R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D127R:U -> C112R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C112R:A -> D128R:A: outward } 0 9 {D128R:A -> C112R:A: outward } 0 10 {C113R:G -> C114R:C: adjacent_5p upward } 0 11 {C114R:C -> C113R:G: adjacent_3p downward } 0 12 {C113R:G -> D126R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D126R:C -> C113R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C114R:C -> D125R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D125R:G -> C114R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D125R:G -> D126R:C: adjacent_5p upward } 0 17 {D126R:C -> D125R:G: adjacent_3p downward } 0 18 {D126R:C -> D127R:U: adjacent_5p } 0 19 {D127R:U -> D126R:C: adjacent_3p } 0 20 {D127R:U -> D128R:A: adjacent_5p } 0 21 {D128R:A -> D127R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C112R:A 0 1 C113R:G 0 2 C114R:C 0 3 C115R:G 0 4 D124R:C 0 5 D125R:G 0 6 D126R:C 0 7 D127R:U 0 [Edges] 0 {C112R:A -> C113R:G: adjacent_5p upward } 0 1 {C113R:G -> C112R:A: adjacent_3p downward } 0 2 {C112R:A -> D127R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D127R:U -> C112R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C113R:G -> C114R:C: adjacent_5p upward } 0 5 {C114R:C -> C113R:G: adjacent_3p downward } 0 6 {C113R:G -> D126R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D126R:C -> C113R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C114R:C -> C115R:G: adjacent_5p upward } 0 9 {C115R:G -> C114R:C: adjacent_3p downward } 0 10 {C114R:C -> D125R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D125R:G -> C114R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C115R:G -> D124R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D124R:C -> C115R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C115R:G -> D125R:G: outward } 0 15 {D125R:G -> C115R:G: outward } 0 16 {D124R:C -> D125R:G: adjacent_5p upward } 0 17 {D125R:G -> D124R:C: adjacent_3p downward } 0 18 {D125R:G -> D126R:C: adjacent_5p upward } 0 19 {D126R:C -> D125R:G: adjacent_3p downward } 0 20 {D126R:C -> D127R:U: adjacent_5p } 0 21 {D127R:U -> D126R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C113R:G 0 1 C114R:C 0 2 C115R:G 0 3 C116R:G 0 4 D123R:C 0 5 D124R:C 0 6 D125R:G 0 7 D126R:C 0 [Edges] 0 {C113R:G -> C114R:C: adjacent_5p upward } 0 1 {C114R:C -> C113R:G: adjacent_3p downward } 0 2 {C113R:G -> D126R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D126R:C -> C113R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C114R:C -> C115R:G: adjacent_5p upward } 0 5 {C115R:G -> C114R:C: adjacent_3p downward } 0 6 {C114R:C -> D125R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D125R:G -> C114R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C115R:G -> C116R:G: adjacent_5p upward } 0 9 {C116R:G -> C115R:G: adjacent_3p downward } 0 10 {C115R:G -> D124R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D124R:C -> C115R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C115R:G -> D125R:G: outward } 0 13 {D125R:G -> C115R:G: outward } 0 14 {C116R:G -> D123R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D123R:C -> C116R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D123R:C -> D124R:C: adjacent_5p upward } 0 17 {D124R:C -> D123R:C: adjacent_3p downward } 0 18 {D124R:C -> D125R:G: adjacent_5p upward } 0 19 {D125R:G -> D124R:C: adjacent_3p downward } 0 20 {D125R:G -> D126R:C: adjacent_5p upward } 0 21 {D126R:C -> D125R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C114R:C 0 1 C115R:G 0 2 C116R:G 0 3 C117R:U 0 4 D122R:A 0 5 D123R:C 0 6 D124R:C 0 7 D125R:G 0 [Edges] 0 {C114R:C -> C115R:G: adjacent_5p upward } 0 1 {C115R:G -> C114R:C: adjacent_3p downward } 0 2 {C114R:C -> D125R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D125R:G -> C114R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C115R:G -> C116R:G: adjacent_5p upward } 0 5 {C116R:G -> C115R:G: adjacent_3p downward } 0 6 {C115R:G -> D124R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D124R:C -> C115R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C115R:G -> D125R:G: outward } 0 9 {D125R:G -> C115R:G: outward } 0 10 {C116R:G -> C117R:U: adjacent_5p upward } 0 11 {C117R:U -> C116R:G: adjacent_3p downward } 0 12 {C116R:G -> D123R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D123R:C -> C116R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C117R:U -> D122R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {D122R:A -> C117R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {D122R:A -> D123R:C: adjacent_5p upward } 0 17 {D123R:C -> D122R:A: adjacent_3p downward } 0 18 {D123R:C -> D124R:C: adjacent_5p upward } 0 19 {D124R:C -> D123R:C: adjacent_3p downward } 0 20 {D124R:C -> D125R:G: adjacent_5p upward } 0 21 {D125R:G -> D124R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C115R:G 0 1 C116R:G 0 2 C117R:U 0 3 C118R:G 0 4 D121R:C 0 5 D122R:A 0 6 D123R:C 0 7 D124R:C 0 [Edges] 0 {C115R:G -> C116R:G: adjacent_5p upward } 0 1 {C116R:G -> C115R:G: adjacent_3p downward } 0 2 {C115R:G -> D124R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D124R:C -> C115R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C116R:G -> C117R:U: adjacent_5p upward } 0 5 {C117R:U -> C116R:G: adjacent_3p downward } 0 6 {C116R:G -> D123R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D123R:C -> C116R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C117R:U -> C118R:G: adjacent_5p } 0 9 {C118R:G -> C117R:U: adjacent_3p } 0 10 {C117R:U -> D122R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D122R:A -> C117R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C118R:G -> D121R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D121R:C -> C118R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C118R:G -> D122R:A: outward } 0 15 {D122R:A -> C118R:G: outward } 0 16 {D121R:C -> D122R:A: adjacent_5p upward } 0 17 {D122R:A -> D121R:C: adjacent_3p downward } 0 18 {D122R:A -> D123R:C: adjacent_5p upward } 0 19 {D123R:C -> D122R:A: adjacent_3p downward } 0 20 {D123R:C -> D124R:C: adjacent_5p upward } 0 21 {D124R:C -> D123R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:U 0 2 A7R:G 0 3 A8R:U 0 4 A19R:A 0 5 A20R:C 0 6 A21R:A 0 7 A22R:C 0 [Edges] 0 {A5R:G -> A6R:U: adjacent_5p upward } 0 1 {A6R:U -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:U -> A7R:G: adjacent_5p } 0 5 {A7R:G -> A6R:U: adjacent_3p } 0 6 {A6R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A21R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:G -> A8R:U: adjacent_5p upward } 0 9 {A8R:U -> A7R:G: adjacent_3p downward } 0 10 {A7R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:G -> A21R:A: outward } 0 13 {A21R:A -> A7R:G: outward } 0 14 {A8R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A19R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A19R:A -> A20R:C: adjacent_5p upward } 0 17 {A20R:C -> A19R:A: adjacent_3p downward } 0 18 {A20R:C -> A21R:A: adjacent_5p } 0 19 {A21R:A -> A20R:C: adjacent_3p } 0 20 {A21R:A -> A22R:C: adjacent_5p upward } 0 21 {A22R:C -> A21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A6R:U 0 1 A7R:G 0 2 A8R:U 0 3 A9R:G 0 4 A18R:C 0 5 A19R:A 0 6 A20R:C 0 7 A21R:A 0 [Edges] 0 {A6R:U -> A7R:G: adjacent_5p } 0 1 {A7R:G -> A6R:U: adjacent_3p } 0 2 {A6R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A21R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:G -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:G: adjacent_3p downward } 0 6 {A7R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:G -> A21R:A: outward } 0 9 {A21R:A -> A7R:G: outward } 0 10 {A8R:U -> A9R:G: adjacent_5p } 0 11 {A9R:G -> A8R:U: adjacent_3p } 0 12 {A8R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A19R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A9R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A18R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A9R:G -> A19R:A: outward } 0 17 {A19R:A -> A9R:G: outward } 0 18 {A18R:C -> A19R:A: adjacent_5p upward } 0 19 {A19R:A -> A18R:C: adjacent_3p downward } 0 20 {A19R:A -> A20R:C: adjacent_5p upward } 0 21 {A20R:C -> A19R:A: adjacent_3p downward } 0 22 {A20R:C -> A21R:A: adjacent_5p } 0 23 {A21R:A -> A20R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:U 0 2 A9R:G 0 3 A10R:A 0 4 A17R:U 0 5 A18R:C 0 6 A19R:A 0 7 A20R:C 0 [Edges] 0 {A7R:G -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:U -> A9R:G: adjacent_5p } 0 5 {A9R:G -> A8R:U: adjacent_3p } 0 6 {A8R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A19R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:G -> A10R:A: adjacent_5p upward } 0 9 {A10R:A -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A18R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:G -> A19R:A: outward } 0 13 {A19R:A -> A9R:G: outward } 0 14 {A10R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A17R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A17R:U -> A18R:C: adjacent_5p upward } 0 17 {A18R:C -> A17R:U: adjacent_3p downward } 0 18 {A18R:C -> A19R:A: adjacent_5p upward } 0 19 {A19R:A -> A18R:C: adjacent_3p downward } 0 20 {A19R:A -> A20R:C: adjacent_5p upward } 0 21 {A20R:C -> A19R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A18R:C 0 1 A19R:C 0 2 A20R:A 0 3 A21R:G 0 4 A41R:C 0 5 A42R:U 0 6 A43R:G 0 7 A44R:G 0 [Edges] 0 {A18R:C -> A19R:C: adjacent_5p } 0 1 {A19R:C -> A18R:C: adjacent_3p } 0 2 {A18R:C -> A44R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A44R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A19R:C -> A20R:A: adjacent_5p upward } 0 5 {A20R:A -> A19R:C: adjacent_3p downward } 0 6 {A19R:C -> A43R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A43R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A20R:A -> A21R:G: adjacent_5p upward } 0 9 {A21R:G -> A20R:A: adjacent_3p downward } 0 10 {A20R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A42R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A20R:A -> A43R:G: outward } 0 13 {A43R:G -> A20R:A: outward } 0 14 {A21R:G -> A41R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A41R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A41R:C -> A42R:U: adjacent_5p } 0 17 {A42R:U -> A41R:C: adjacent_3p } 0 18 {A42R:U -> A43R:G: adjacent_5p } 0 19 {A43R:G -> A42R:U: adjacent_3p } 0 20 {A43R:G -> A44R:G: adjacent_5p upward } 0 21 {A44R:G -> A43R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A19R:C 0 1 A20R:A 0 2 A21R:G 0 3 A22R:A 0 4 A40R:U 0 5 A41R:C 0 6 A42R:U 0 7 A43R:G 0 [Edges] 0 {A19R:C -> A20R:A: adjacent_5p upward } 0 1 {A20R:A -> A19R:C: adjacent_3p downward } 0 2 {A19R:C -> A43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A43R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A20R:A -> A21R:G: adjacent_5p upward } 0 5 {A21R:G -> A20R:A: adjacent_3p downward } 0 6 {A20R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A42R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A20R:A -> A43R:G: outward } 0 9 {A43R:G -> A20R:A: outward } 0 10 {A21R:G -> A22R:A: adjacent_5p upward } 0 11 {A22R:A -> A21R:G: adjacent_3p downward } 0 12 {A21R:G -> A41R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A41R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A22R:A -> A40R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A40R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A40R:U -> A41R:C: adjacent_5p upward } 0 17 {A41R:C -> A40R:U: adjacent_3p downward } 0 18 {A41R:C -> A42R:U: adjacent_5p } 0 19 {A42R:U -> A41R:C: adjacent_3p } 0 20 {A42R:U -> A43R:G: adjacent_5p } 0 21 {A43R:G -> A42R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A26R:G 0 1 A27R:A 0 2 A28R:G 0 3 A29R:C 0 4 A36R:G 0 5 A37R:C 0 6 A38R:U 0 7 A39R:C 0 [Edges] 0 {A26R:G -> A27R:A: adjacent_5p upward } 0 1 {A27R:A -> A26R:G: adjacent_3p downward } 0 2 {A26R:G -> A39R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A39R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A27R:A -> A28R:G: adjacent_5p upward } 0 5 {A28R:G -> A27R:A: adjacent_3p downward } 0 6 {A27R:A -> A38R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A38R:U -> A27R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A28R:G -> A29R:C: adjacent_5p upward } 0 9 {A29R:C -> A28R:G: adjacent_3p downward } 0 10 {A28R:G -> A37R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A37R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A29R:C -> A36R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A36R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A36R:G -> A37R:C: adjacent_5p upward } 0 15 {A37R:C -> A36R:G: adjacent_3p downward } 0 16 {A37R:C -> A38R:U: adjacent_5p } 0 17 {A38R:U -> A37R:C: adjacent_3p } 0 18 {A38R:U -> A39R:C: adjacent_5p } 0 19 {A39R:C -> A38R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:G 0 3 A5R:U 0 4 B12R:G 0 5 B13R:U 0 6 B14R:U 0 7 B15R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> B14R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B14R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> B13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B13R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A5R:U -> B12R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {B12R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {B12R:G -> B13R:U: adjacent_5p upward } 0 15 {B13R:U -> B12R:G: adjacent_3p downward } 0 16 {B13R:U -> B14R:U: adjacent_5p } 0 17 {B14R:U -> B13R:U: adjacent_3p } 0 18 {B14R:U -> B15R:C: adjacent_5p } 0 19 {B15R:C -> B14R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:G 0 2 A5R:U 0 3 A6R:U 0 4 B11R:A 0 5 B12R:G 0 6 B13R:U 0 7 B14R:U 0 [Edges] 0 {A3R:A -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> B14R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B14R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B13R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A5R:U -> A6R:U: adjacent_5p } 0 9 {A6R:U -> A5R:U: adjacent_3p } 0 10 {A5R:U -> B12R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B12R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A6R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B11R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B11R:A -> B12R:G: adjacent_5p upward } 0 15 {B12R:G -> B11R:A: adjacent_3p downward } 0 16 {B12R:G -> B13R:U: adjacent_5p upward } 0 17 {B13R:U -> B12R:G: adjacent_3p downward } 0 18 {B13R:U -> B14R:U: adjacent_5p } 0 19 {B14R:U -> B13R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:U 0 2 A6R:U 0 3 A7R:C 0 4 B10R:G 0 5 B11R:A 0 6 B12R:G 0 7 B13R:U 0 [Edges] 0 {A4R:G -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B13R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A5R:U -> A6R:U: adjacent_5p } 0 5 {A6R:U -> A5R:U: adjacent_3p } 0 6 {A5R:U -> B12R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B12R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A6R:U -> A7R:C: adjacent_5p } 0 9 {A7R:C -> A6R:U: adjacent_3p } 0 10 {A6R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B11R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B10R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B10R:G -> B11R:A: adjacent_5p upward } 0 15 {B11R:A -> B10R:G: adjacent_3p downward } 0 16 {B11R:A -> B12R:G: adjacent_5p upward } 0 17 {B12R:G -> B11R:A: adjacent_3p downward } 0 18 {B12R:G -> B13R:U: adjacent_5p upward } 0 19 {B13R:U -> B12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:U 0 3 A5R:G 0 4 B12R:U 0 5 B13R:G 0 6 B14R:U 0 7 B15R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> B14R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B14R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:U -> A5R:G: adjacent_5p } 0 9 {A5R:G -> A4R:U: adjacent_3p } 0 10 {A4R:U -> B13R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B13R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A5R:G -> B12R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B12R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A5R:G -> B13R:G: outward } 0 15 {B13R:G -> A5R:G: outward } 0 16 {B12R:U -> B13R:G: adjacent_5p } 0 17 {B13R:G -> B12R:U: adjacent_3p } 0 18 {B13R:G -> B14R:U: adjacent_5p upward } 0 19 {B14R:U -> B13R:G: adjacent_3p downward } 0 20 {B14R:U -> B15R:C: adjacent_5p upward } 0 21 {B15R:C -> B14R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:U 0 2 A5R:G 0 3 A6R:U 0 4 B11R:A 0 5 B12R:U 0 6 B13R:G 0 7 B14R:U 0 [Edges] 0 {A3R:A -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> B14R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B14R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:U -> A5R:G: adjacent_5p } 0 5 {A5R:G -> A4R:U: adjacent_3p } 0 6 {A4R:U -> B13R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B13R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A5R:G -> A6R:U: adjacent_5p upward } 0 9 {A6R:U -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> B12R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B12R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A5R:G -> B13R:G: outward } 0 13 {B13R:G -> A5R:G: outward } 0 14 {A6R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B11R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B11R:A -> B12R:U: adjacent_5p upward } 0 17 {B12R:U -> B11R:A: adjacent_3p downward } 0 18 {B12R:U -> B13R:G: adjacent_5p } 0 19 {B13R:G -> B12R:U: adjacent_3p } 0 20 {B13R:G -> B14R:U: adjacent_5p upward } 0 21 {B14R:U -> B13R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:G 0 2 A6R:U 0 3 A7R:C 0 4 B10R:G 0 5 B11R:A 0 6 B12R:U 0 7 B13R:G 0 [Edges] 0 {A4R:U -> A5R:G: adjacent_5p } 0 1 {A5R:G -> A4R:U: adjacent_3p } 0 2 {A4R:U -> B13R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B13R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A5R:G -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> B12R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B12R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A5R:G -> B13R:G: outward } 0 9 {B13R:G -> A5R:G: outward } 0 10 {A6R:U -> A7R:C: adjacent_5p upward } 0 11 {A7R:C -> A6R:U: adjacent_3p downward } 0 12 {A6R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B11R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A7R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B10R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B10R:G -> B11R:A: adjacent_5p upward } 0 17 {B11R:A -> B10R:G: adjacent_3p downward } 0 18 {B11R:A -> B12R:U: adjacent_5p upward } 0 19 {B12R:U -> B11R:A: adjacent_3p downward } 0 20 {B12R:U -> B13R:G: adjacent_5p } 0 21 {B13R:G -> B12R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 B1R:G 0 1 B2R:C 0 2 B3R:C 0 3 B4R:G 0 4 B69R:C 0 5 B70R:G 0 6 B71R:G 0 7 B72R:C 0 [Edges] 0 {B1R:G -> B2R:C: adjacent_5p upward } 0 1 {B2R:C -> B1R:G: adjacent_3p downward } 0 2 {B1R:G -> B72R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B72R:C -> B1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B2R:C -> B3R:C: adjacent_5p } 0 5 {B3R:C -> B2R:C: adjacent_3p } 0 6 {B2R:C -> B71R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B71R:G -> B2R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B3R:C -> B4R:G: adjacent_5p upward } 0 9 {B4R:G -> B3R:C: adjacent_3p downward } 0 10 {B3R:C -> B70R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B70R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B4R:G -> B69R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B69R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B4R:G -> B70R:G: outward } 0 15 {B70R:G -> B4R:G: outward } 0 16 {B69R:C -> B70R:G: adjacent_5p } 0 17 {B70R:G -> B69R:C: adjacent_3p } 0 18 {B70R:G -> B71R:G: adjacent_5p upward } 0 19 {B71R:G -> B70R:G: adjacent_3p downward } 0 20 {B71R:G -> B72R:C: adjacent_5p upward } 0 21 {B72R:C -> B71R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B2R:C 0 1 B3R:C 0 2 B4R:G 0 3 B5R:A 0 4 B68R:U 0 5 B69R:C 0 6 B70R:G 0 7 B71R:G 0 [Edges] 0 {B2R:C -> B3R:C: adjacent_5p } 0 1 {B3R:C -> B2R:C: adjacent_3p } 0 2 {B2R:C -> B71R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B71R:G -> B2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B3R:C -> B4R:G: adjacent_5p upward } 0 5 {B4R:G -> B3R:C: adjacent_3p downward } 0 6 {B3R:C -> B70R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B70R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B4R:G -> B5R:A: adjacent_5p upward } 0 9 {B5R:A -> B4R:G: adjacent_3p downward } 0 10 {B4R:G -> B69R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B69R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B4R:G -> B70R:G: outward } 0 13 {B70R:G -> B4R:G: outward } 0 14 {B5R:A -> B68R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B68R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B68R:U -> B69R:C: adjacent_5p } 0 17 {B69R:C -> B68R:U: adjacent_3p } 0 18 {B69R:C -> B70R:G: adjacent_5p } 0 19 {B70R:G -> B69R:C: adjacent_3p } 0 20 {B70R:G -> B71R:G: adjacent_5p upward } 0 21 {B71R:G -> B70R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B3R:C 0 1 B4R:G 0 2 B5R:A 0 3 B6R:U 0 4 B67R:A 0 5 B68R:U 0 6 B69R:C 0 7 B70R:G 0 [Edges] 0 {B3R:C -> B4R:G: adjacent_5p upward } 0 1 {B4R:G -> B3R:C: adjacent_3p downward } 0 2 {B3R:C -> B70R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B70R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B4R:G -> B5R:A: adjacent_5p upward } 0 5 {B5R:A -> B4R:G: adjacent_3p downward } 0 6 {B4R:G -> B69R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B69R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B4R:G -> B70R:G: outward } 0 9 {B70R:G -> B4R:G: outward } 0 10 {B5R:A -> B6R:U: adjacent_5p upward } 0 11 {B6R:U -> B5R:A: adjacent_3p downward } 0 12 {B5R:A -> B68R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B68R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B6R:U -> B67R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B67R:A -> B6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B67R:A -> B68R:U: adjacent_5p upward } 0 17 {B68R:U -> B67R:A: adjacent_3p downward } 0 18 {B68R:U -> B69R:C: adjacent_5p } 0 19 {B69R:C -> B68R:U: adjacent_3p } 0 20 {B69R:C -> B70R:G: adjacent_5p } 0 21 {B70R:G -> B69R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B4R:G 0 1 B5R:A 0 2 B6R:U 0 3 B7R:A 0 4 B66R:U 0 5 B67R:A 0 6 B68R:U 0 7 B69R:C 0 [Edges] 0 {B4R:G -> B5R:A: adjacent_5p upward } 0 1 {B5R:A -> B4R:G: adjacent_3p downward } 0 2 {B4R:G -> B69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B69R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B5R:A -> B6R:U: adjacent_5p upward } 0 5 {B6R:U -> B5R:A: adjacent_3p downward } 0 6 {B5R:A -> B68R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B68R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B6R:U -> B7R:A: adjacent_5p } 0 9 {B7R:A -> B6R:U: adjacent_3p } 0 10 {B6R:U -> B67R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B67R:A -> B6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B7R:A -> B66R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B66R:U -> B7R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B7R:A -> B67R:A: outward } 0 15 {B67R:A -> B7R:A: outward } 0 16 {B66R:U -> B67R:A: adjacent_5p upward } 0 17 {B67R:A -> B66R:U: adjacent_3p downward } 0 18 {B67R:A -> B68R:U: adjacent_5p upward } 0 19 {B68R:U -> B67R:A: adjacent_3p downward } 0 20 {B68R:U -> B69R:C: adjacent_5p } 0 21 {B69R:C -> B68R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B10R:G 0 1 B11R:C 0 2 B12R:U 0 3 B13R:C 0 4 B22R:G 0 5 B23R:A 0 6 B24R:G 0 7 B25R:C 0 [Edges] 0 {B10R:G -> B11R:C: adjacent_5p upward } 0 1 {B11R:C -> B10R:G: adjacent_3p downward } 0 2 {B10R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B25R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B11R:C -> B12R:U: adjacent_5p } 0 5 {B12R:U -> B11R:C: adjacent_3p } 0 6 {B11R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B24R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B12R:U -> B13R:C: adjacent_5p upward } 0 9 {B13R:C -> B12R:U: adjacent_3p downward } 0 10 {B12R:U -> B23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B23R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B13R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B22R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B22R:G -> B23R:A: adjacent_5p upward } 0 15 {B23R:A -> B22R:G: adjacent_3p downward } 0 16 {B23R:A -> B24R:G: adjacent_5p upward } 0 17 {B24R:G -> B23R:A: adjacent_3p downward } 0 18 {B24R:G -> B25R:C: adjacent_5p upward } 0 19 {B25R:C -> B24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B11R:C 0 1 B12R:U 0 2 B13R:C 0 3 B14R:A 0 4 B21R:A 0 5 B22R:G 0 6 B23R:A 0 7 B24R:G 0 [Edges] 0 {B11R:C -> B12R:U: adjacent_5p } 0 1 {B12R:U -> B11R:C: adjacent_3p } 0 2 {B11R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B24R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B12R:U -> B13R:C: adjacent_5p upward } 0 5 {B13R:C -> B12R:U: adjacent_3p downward } 0 6 {B12R:U -> B23R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B23R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B13R:C -> B14R:A: adjacent_5p } 0 9 {B14R:A -> B13R:C: adjacent_3p } 0 10 {B13R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B22R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B14R:A -> B21R:A: pairing antiparallel trans one_hbond 40 Wh/Ss } 0 13 {B21R:A -> B14R:A: pairing antiparallel trans one_hbond 40 Ss/Wh } 0 14 {B14R:A -> B22R:G: outward } 0 15 {B22R:G -> B14R:A: outward } 0 16 {B21R:A -> B22R:G: adjacent_5p } 0 17 {B22R:G -> B21R:A: adjacent_3p } 0 18 {B22R:G -> B23R:A: adjacent_5p upward } 0 19 {B23R:A -> B22R:G: adjacent_3p downward } 0 20 {B23R:A -> B24R:G: adjacent_5p upward } 0 21 {B24R:G -> B23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B26R:A 0 1 B27R:G 0 2 B28R:C 0 3 B29R:G 0 4 B41R:C 0 5 B42R:G 0 6 B43R:A 0 7 B44R:A 0 [Edges] 0 {B26R:A -> B27R:G: adjacent_5p upward } 0 1 {B27R:G -> B26R:A: adjacent_3p downward } 0 2 {B26R:A -> B44R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 3 {B44R:A -> B26R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 4 {B27R:G -> B28R:C: adjacent_5p upward } 0 5 {B28R:C -> B27R:G: adjacent_3p downward } 0 6 {B27R:G -> B43R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {B43R:A -> B27R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {B28R:C -> B29R:G: adjacent_5p upward } 0 9 {B29R:G -> B28R:C: adjacent_3p downward } 0 10 {B28R:C -> B42R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B42R:G -> B28R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B29R:G -> B41R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B41R:C -> B29R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B29R:G -> B42R:G: outward } 0 15 {B42R:G -> B29R:G: outward } 0 16 {B41R:C -> B42R:G: adjacent_5p upward } 0 17 {B42R:G -> B41R:C: adjacent_3p downward } 0 18 {B42R:G -> B43R:A: adjacent_5p upward } 0 19 {B43R:A -> B42R:G: adjacent_3p downward } 0 20 {B43R:A -> B44R:A: adjacent_5p upward } 0 21 {B44R:A -> B43R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B27R:G 0 1 B28R:C 0 2 B29R:G 0 3 B30R:C 0 4 B40R:G 0 5 B41R:C 0 6 B42R:G 0 7 B43R:A 0 [Edges] 0 {B27R:G -> B28R:C: adjacent_5p upward } 0 1 {B28R:C -> B27R:G: adjacent_3p downward } 0 2 {B27R:G -> B43R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {B43R:A -> B27R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {B28R:C -> B29R:G: adjacent_5p upward } 0 5 {B29R:G -> B28R:C: adjacent_3p downward } 0 6 {B28R:C -> B42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B42R:G -> B28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B29R:G -> B30R:C: adjacent_5p upward } 0 9 {B30R:C -> B29R:G: adjacent_3p downward } 0 10 {B29R:G -> B41R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B41R:C -> B29R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B29R:G -> B42R:G: outward } 0 13 {B42R:G -> B29R:G: outward } 0 14 {B30R:C -> B40R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B40R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B40R:G -> B41R:C: adjacent_5p upward } 0 17 {B41R:C -> B40R:G: adjacent_3p downward } 0 18 {B41R:C -> B42R:G: adjacent_5p upward } 0 19 {B42R:G -> B41R:C: adjacent_3p downward } 0 20 {B42R:G -> B43R:A: adjacent_5p upward } 0 21 {B43R:A -> B42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B28R:C 0 1 B29R:G 0 2 B30R:C 0 3 B31R:A 0 4 B39R:U 0 5 B40R:G 0 6 B41R:C 0 7 B42R:G 0 [Edges] 0 {B28R:C -> B29R:G: adjacent_5p upward } 0 1 {B29R:G -> B28R:C: adjacent_3p downward } 0 2 {B28R:C -> B42R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B42R:G -> B28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B29R:G -> B30R:C: adjacent_5p upward } 0 5 {B30R:C -> B29R:G: adjacent_3p downward } 0 6 {B29R:G -> B41R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B41R:C -> B29R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B29R:G -> B42R:G: outward } 0 9 {B42R:G -> B29R:G: outward } 0 10 {B30R:C -> B31R:A: adjacent_5p upward } 0 11 {B31R:A -> B30R:C: adjacent_3p downward } 0 12 {B30R:C -> B40R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B40R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B31R:A -> B39R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B39R:U -> B31R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B31R:A -> B40R:G: outward } 0 17 {B40R:G -> B31R:A: outward } 0 18 {B39R:U -> B40R:G: adjacent_5p } 0 19 {B40R:G -> B39R:U: adjacent_3p } 0 20 {B40R:G -> B41R:C: adjacent_5p upward } 0 21 {B41R:C -> B40R:G: adjacent_3p downward } 0 22 {B41R:C -> B42R:G: adjacent_5p upward } 0 23 {B42R:G -> B41R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 B49R:G 0 1 B50R:U 0 2 B51R:A 0 3 B52R:G 0 4 B62R:C 0 5 B63R:U 0 6 B64R:A 0 7 B65R:U 0 [Edges] 0 {B49R:G -> B50R:U: adjacent_5p upward } 0 1 {B50R:U -> B49R:G: adjacent_3p downward } 0 2 {B49R:G -> B65R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B65R:U -> B49R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B50R:U -> B51R:A: adjacent_5p } 0 5 {B51R:A -> B50R:U: adjacent_3p } 0 6 {B50R:U -> B64R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B64R:A -> B50R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B51R:A -> B52R:G: adjacent_5p upward } 0 9 {B52R:G -> B51R:A: adjacent_3p downward } 0 10 {B51R:A -> B63R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B63R:U -> B51R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B51R:A -> B64R:A: outward } 0 13 {B64R:A -> B51R:A: outward } 0 14 {B52R:G -> B62R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B62R:C -> B52R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B62R:C -> B63R:U: adjacent_5p upward } 0 17 {B63R:U -> B62R:C: adjacent_3p downward } 0 18 {B63R:U -> B64R:A: adjacent_5p upward } 0 19 {B64R:A -> B63R:U: adjacent_3p downward } 0 20 {B64R:A -> B65R:U: adjacent_5p upward } 0 21 {B65R:U -> B64R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B50R:U 0 1 B51R:A 0 2 B52R:G 0 3 B53R:G 0 4 B61R:C 0 5 B62R:C 0 6 B63R:U 0 7 B64R:A 0 [Edges] 0 {B50R:U -> B51R:A: adjacent_5p } 0 1 {B51R:A -> B50R:U: adjacent_3p } 0 2 {B50R:U -> B64R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B64R:A -> B50R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B51R:A -> B52R:G: adjacent_5p upward } 0 5 {B52R:G -> B51R:A: adjacent_3p downward } 0 6 {B51R:A -> B63R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B63R:U -> B51R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B51R:A -> B64R:A: outward } 0 9 {B64R:A -> B51R:A: outward } 0 10 {B52R:G -> B53R:G: adjacent_5p upward } 0 11 {B53R:G -> B52R:G: adjacent_3p downward } 0 12 {B52R:G -> B62R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B62R:C -> B52R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B53R:G -> B61R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B61R:C -> B53R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B61R:C -> B62R:C: adjacent_5p } 0 17 {B62R:C -> B61R:C: adjacent_3p } 0 18 {B62R:C -> B63R:U: adjacent_5p upward } 0 19 {B63R:U -> B62R:C: adjacent_3p downward } 0 20 {B63R:U -> B64R:A: adjacent_5p upward } 0 21 {B64R:A -> B63R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 T2R:G 0 1 T3R:G 0 2 T4R:C 0 3 T5R:U 0 4 T68R:G 0 5 T69R:G 0 6 T70R:C 0 7 T71R:C 0 [Edges] 0 {T2R:G -> T3R:G: adjacent_5p upward } 0 1 {T3R:G -> T2R:G: adjacent_3p downward } 0 2 {T2R:G -> T71R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {T71R:C -> T2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {T3R:G -> T4R:C: adjacent_5p upward } 0 5 {T4R:C -> T3R:G: adjacent_3p downward } 0 6 {T3R:G -> T70R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {T70R:C -> T3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {T4R:C -> T5R:U: adjacent_5p upward } 0 9 {T5R:U -> T4R:C: adjacent_3p downward } 0 10 {T4R:C -> T69R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {T69R:G -> T4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {T5R:U -> T68R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {T68R:G -> T5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {T68R:G -> T69R:G: adjacent_5p upward } 0 15 {T69R:G -> T68R:G: adjacent_3p downward } 0 16 {T69R:G -> T70R:C: adjacent_5p upward } 0 17 {T70R:C -> T69R:G: adjacent_3p downward } 0 18 {T70R:C -> T71R:C: adjacent_5p upward } 0 19 {T71R:C -> T70R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 T3R:G 0 1 T4R:C 0 2 T5R:U 0 3 T6R:U 0 4 T67R:A 0 5 T68R:G 0 6 T69R:G 0 7 T70R:C 0 [Edges] 0 {T3R:G -> T4R:C: adjacent_5p upward } 0 1 {T4R:C -> T3R:G: adjacent_3p downward } 0 2 {T3R:G -> T70R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {T70R:C -> T3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {T4R:C -> T5R:U: adjacent_5p upward } 0 5 {T5R:U -> T4R:C: adjacent_3p downward } 0 6 {T4R:C -> T69R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {T69R:G -> T4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {T5R:U -> T6R:U: adjacent_5p } 0 9 {T6R:U -> T5R:U: adjacent_3p } 0 10 {T5R:U -> T68R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {T68R:G -> T5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {T6R:U -> T67R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {T67R:A -> T6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {T6R:U -> T68R:G: outward } 0 15 {T68R:G -> T6R:U: outward } 0 16 {T67R:A -> T68R:G: adjacent_5p upward } 0 17 {T68R:G -> T67R:A: adjacent_3p downward } 0 18 {T68R:G -> T69R:G: adjacent_5p upward } 0 19 {T69R:G -> T68R:G: adjacent_3p downward } 0 20 {T69R:G -> T70R:C: adjacent_5p upward } 0 21 {T70R:C -> T69R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 T4R:C 0 1 T5R:U 0 2 T6R:U 0 3 T7R:G 0 4 T66R:C 0 5 T67R:A 0 6 T68R:G 0 7 T69R:G 0 [Edges] 0 {T4R:C -> T5R:U: adjacent_5p upward } 0 1 {T5R:U -> T4R:C: adjacent_3p downward } 0 2 {T4R:C -> T69R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {T69R:G -> T4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {T5R:U -> T6R:U: adjacent_5p } 0 5 {T6R:U -> T5R:U: adjacent_3p } 0 6 {T5R:U -> T68R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {T68R:G -> T5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {T6R:U -> T7R:G: adjacent_5p } 0 9 {T7R:G -> T6R:U: adjacent_3p } 0 10 {T6R:U -> T67R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {T67R:A -> T6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {T6R:U -> T68R:G: outward } 0 13 {T68R:G -> T6R:U: outward } 0 14 {T7R:G -> T66R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {T66R:C -> T7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {T7R:G -> T67R:A: outward } 0 17 {T67R:A -> T7R:G: outward } 0 18 {T66R:C -> T67R:A: adjacent_5p upward } 0 19 {T67R:A -> T66R:C: adjacent_3p downward } 0 20 {T67R:A -> T68R:G: adjacent_5p upward } 0 21 {T68R:G -> T67R:A: adjacent_3p downward } 0 22 {T68R:G -> T69R:G: adjacent_5p upward } 0 23 {T69R:G -> T68R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 T10R:G 0 1 T11R:C 0 2 T12R:U 0 3 T13R:C 0 4 T22R:G 0 5 T23R:A 0 6 T24R:G 0 7 T25R:C 0 [Edges] 0 {T10R:G -> T11R:C: adjacent_5p upward } 0 1 {T11R:C -> T10R:G: adjacent_3p downward } 0 2 {T10R:G -> T25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {T25R:C -> T10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {T11R:C -> T12R:U: adjacent_5p upward } 0 5 {T12R:U -> T11R:C: adjacent_3p downward } 0 6 {T11R:C -> T24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {T24R:G -> T11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {T12R:U -> T13R:C: adjacent_5p upward } 0 9 {T13R:C -> T12R:U: adjacent_3p downward } 0 10 {T12R:U -> T23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {T23R:A -> T12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {T13R:C -> T22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {T22R:G -> T13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {T22R:G -> T23R:A: adjacent_5p upward } 0 15 {T23R:A -> T22R:G: adjacent_3p downward } 0 16 {T23R:A -> T24R:G: adjacent_5p upward } 0 17 {T24R:G -> T23R:A: adjacent_3p downward } 0 18 {T24R:G -> T25R:C: adjacent_5p upward } 0 19 {T25R:C -> T24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 T26R:G 0 1 T27R:C 0 2 T28R:A 0 3 T29R:C 0 4 T41R:G 0 5 T42R:U 0 6 T43R:G 0 7 T44R:A 0 [Edges] 0 {T26R:G -> T27R:C: adjacent_5p upward } 0 1 {T27R:C -> T26R:G: adjacent_3p downward } 0 2 {T26R:G -> T44R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {T44R:A -> T26R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {T27R:C -> T28R:A: adjacent_5p upward } 0 5 {T28R:A -> T27R:C: adjacent_3p downward } 0 6 {T27R:C -> T43R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {T43R:G -> T27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {T28R:A -> T29R:C: adjacent_5p upward } 0 9 {T29R:C -> T28R:A: adjacent_3p downward } 0 10 {T28R:A -> T42R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {T42R:U -> T28R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {T28R:A -> T43R:G: outward } 0 13 {T43R:G -> T28R:A: outward } 0 14 {T29R:C -> T41R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {T41R:G -> T29R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {T41R:G -> T42R:U: adjacent_5p upward } 0 17 {T42R:U -> T41R:G: adjacent_3p downward } 0 18 {T42R:U -> T43R:G: adjacent_5p upward } 0 19 {T43R:G -> T42R:U: adjacent_3p downward } 0 20 {T43R:G -> T44R:A: adjacent_5p upward } 0 21 {T44R:A -> T43R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 T27R:C 0 1 T28R:A 0 2 T29R:C 0 3 T30R:C 0 4 T40R:G 0 5 T41R:G 0 6 T42R:U 0 7 T43R:G 0 [Edges] 0 {T27R:C -> T28R:A: adjacent_5p upward } 0 1 {T28R:A -> T27R:C: adjacent_3p downward } 0 2 {T27R:C -> T43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {T43R:G -> T27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {T28R:A -> T29R:C: adjacent_5p upward } 0 5 {T29R:C -> T28R:A: adjacent_3p downward } 0 6 {T28R:A -> T42R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {T42R:U -> T28R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {T28R:A -> T43R:G: outward } 0 9 {T43R:G -> T28R:A: outward } 0 10 {T29R:C -> T30R:C: adjacent_5p upward } 0 11 {T30R:C -> T29R:C: adjacent_3p downward } 0 12 {T29R:C -> T41R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {T41R:G -> T29R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {T30R:C -> T40R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {T40R:G -> T30R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {T40R:G -> T41R:G: adjacent_5p upward } 0 17 {T41R:G -> T40R:G: adjacent_3p downward } 0 18 {T41R:G -> T42R:U: adjacent_5p upward } 0 19 {T42R:U -> T41R:G: adjacent_3p downward } 0 20 {T42R:U -> T43R:G: adjacent_5p upward } 0 21 {T43R:G -> T42R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 T28R:A 0 1 T29R:C 0 2 T30R:C 0 3 T31R:C 0 4 T39R:G 0 5 T40R:G 0 6 T41R:G 0 7 T42R:U 0 [Edges] 0 {T28R:A -> T29R:C: adjacent_5p upward } 0 1 {T29R:C -> T28R:A: adjacent_3p downward } 0 2 {T28R:A -> T42R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {T42R:U -> T28R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {T29R:C -> T30R:C: adjacent_5p upward } 0 5 {T30R:C -> T29R:C: adjacent_3p downward } 0 6 {T29R:C -> T41R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {T41R:G -> T29R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {T30R:C -> T31R:C: adjacent_5p } 0 9 {T31R:C -> T30R:C: adjacent_3p } 0 10 {T30R:C -> T40R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {T40R:G -> T30R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {T31R:C -> T39R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {T39R:G -> T31R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {T31R:C -> T40R:G: outward } 0 15 {T40R:G -> T31R:C: outward } 0 16 {T39R:G -> T40R:G: adjacent_5p upward } 0 17 {T40R:G -> T39R:G: adjacent_3p downward } 0 18 {T40R:G -> T41R:G: adjacent_5p upward } 0 19 {T41R:G -> T40R:G: adjacent_3p downward } 0 20 {T41R:G -> T42R:U: adjacent_5p upward } 0 21 {T42R:U -> T41R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 T29R:C 0 1 T30R:C 0 2 T31R:C 0 3 T32R:C 0 4 T38R:A 0 5 T39R:G 0 6 T40R:G 0 7 T41R:G 0 [Edges] 0 {T29R:C -> T30R:C: adjacent_5p upward } 0 1 {T30R:C -> T29R:C: adjacent_3p downward } 0 2 {T29R:C -> T41R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {T41R:G -> T29R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {T30R:C -> T31R:C: adjacent_5p } 0 5 {T31R:C -> T30R:C: adjacent_3p } 0 6 {T30R:C -> T40R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {T40R:G -> T30R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {T31R:C -> T32R:C: adjacent_5p upward } 0 9 {T32R:C -> T31R:C: adjacent_3p downward } 0 10 {T31R:C -> T39R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {T39R:G -> T31R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {T31R:C -> T40R:G: outward } 0 13 {T40R:G -> T31R:C: outward } 0 14 {T32R:C -> T38R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 15 {T38R:A -> T32R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 16 {T38R:A -> T39R:G: adjacent_5p upward } 0 17 {T39R:G -> T38R:A: adjacent_3p downward } 0 18 {T39R:G -> T40R:G: adjacent_5p upward } 0 19 {T40R:G -> T39R:G: adjacent_3p downward } 0 20 {T40R:G -> T41R:G: adjacent_5p upward } 0 21 {T41R:G -> T40R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 T49R:G 0 1 T50R:G 0 2 T51R:U 0 3 T52R:G 0 4 T62R:C 0 5 T63R:A 0 6 T64R:C 0 7 T65R:U 0 [Edges] 0 {T49R:G -> T50R:G: adjacent_5p upward } 0 1 {T50R:G -> T49R:G: adjacent_3p downward } 0 2 {T49R:G -> T65R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {T65R:U -> T49R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {T50R:G -> T51R:U: adjacent_5p upward } 0 5 {T51R:U -> T50R:G: adjacent_3p downward } 0 6 {T50R:G -> T64R:C: pairing antiparallel cis Ww/Ww } 0 7 {T64R:C -> T50R:G: pairing antiparallel cis Ww/Ww } 0 8 {T51R:U -> T52R:G: adjacent_5p upward } 0 9 {T52R:G -> T51R:U: adjacent_3p downward } 0 10 {T51R:U -> T63R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {T63R:A -> T51R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {T52R:G -> T62R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {T62R:C -> T52R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {T52R:G -> T63R:A: outward } 0 15 {T63R:A -> T52R:G: outward } 0 16 {T62R:C -> T63R:A: adjacent_5p upward } 0 17 {T63R:A -> T62R:C: adjacent_3p downward } 0 18 {T63R:A -> T64R:C: adjacent_5p upward } 0 19 {T64R:C -> T63R:A: adjacent_3p downward } 0 20 {T64R:C -> T65R:U: adjacent_5p upward } 0 21 {T65R:U -> T64R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 T50R:G 0 1 T51R:U 0 2 T52R:G 0 3 T53R:G 0 4 T61R:C 0 5 T62R:C 0 6 T63R:A 0 7 T64R:C 0 [Edges] 0 {T50R:G -> T51R:U: adjacent_5p upward } 0 1 {T51R:U -> T50R:G: adjacent_3p downward } 0 2 {T50R:G -> T64R:C: pairing antiparallel cis Ww/Ww } 0 3 {T64R:C -> T50R:G: pairing antiparallel cis Ww/Ww } 0 4 {T51R:U -> T52R:G: adjacent_5p upward } 0 5 {T52R:G -> T51R:U: adjacent_3p downward } 0 6 {T51R:U -> T63R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {T63R:A -> T51R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {T52R:G -> T53R:G: adjacent_5p upward } 0 9 {T53R:G -> T52R:G: adjacent_3p downward } 0 10 {T52R:G -> T62R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {T62R:C -> T52R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {T52R:G -> T63R:A: outward } 0 13 {T63R:A -> T52R:G: outward } 0 14 {T53R:G -> T61R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {T61R:C -> T53R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {T61R:C -> T62R:C: adjacent_5p } 0 17 {T62R:C -> T61R:C: adjacent_3p } 0 18 {T62R:C -> T63R:A: adjacent_5p upward } 0 19 {T63R:A -> T62R:C: adjacent_3p downward } 0 20 {T63R:A -> T64R:C: adjacent_5p upward } 0 21 {T64R:C -> T63R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:C 0 3 A5R:A 0 4 A22R:U 0 5 A23R:G 0 6 A24R:U 0 7 A25R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A24R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:C -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A23R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:A -> A22R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A22R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A5R:A -> A23R:G: outward } 0 15 {A23R:G -> A5R:A: outward } 0 16 {A22R:U -> A23R:G: adjacent_5p } 0 17 {A23R:G -> A22R:U: adjacent_3p } 0 18 {A23R:G -> A24R:U: adjacent_5p upward } 0 19 {A24R:U -> A23R:G: adjacent_3p downward } 0 20 {A24R:U -> A25R:C: adjacent_5p } 0 21 {A25R:C -> A24R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:C 0 2 A5R:A 0 3 A6R:C 0 4 A21R:G 0 5 A22R:U 0 6 A23R:G 0 7 A24R:U 0 [Edges] 0 {A3R:A -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A24R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:C -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A23R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:A -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> A22R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A22R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:A -> A23R:G: outward } 0 13 {A23R:G -> A5R:A: outward } 0 14 {A6R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A21R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A21R:G -> A22R:U: adjacent_5p upward } 0 17 {A22R:U -> A21R:G: adjacent_3p downward } 0 18 {A22R:U -> A23R:G: adjacent_5p } 0 19 {A23R:G -> A22R:U: adjacent_3p } 0 20 {A23R:G -> A24R:U: adjacent_5p upward } 0 21 {A24R:U -> A23R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:A 0 2 A6R:C 0 3 A7R:G 0 4 A20R:A 0 5 A21R:G 0 6 A22R:U 0 7 A23R:G 0 [Edges] 0 {A4R:C -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> A22R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A22R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:A -> A23R:G: outward } 0 9 {A23R:G -> A5R:A: outward } 0 10 {A6R:C -> A7R:G: adjacent_5p upward } 0 11 {A7R:G -> A6R:C: adjacent_3p downward } 0 12 {A6R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A21R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:G -> A20R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {A20R:A -> A7R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {A20R:A -> A21R:G: adjacent_5p upward } 0 17 {A21R:G -> A20R:A: adjacent_3p downward } 0 18 {A21R:G -> A22R:U: adjacent_5p upward } 0 19 {A22R:U -> A21R:G: adjacent_3p downward } 0 20 {A22R:U -> A23R:G: adjacent_5p } 0 21 {A23R:G -> A22R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:C 0 2 A7R:G 0 3 A8R:A 0 4 A19R:U 0 5 A20R:A 0 6 A21R:G 0 7 A22R:U 0 [Edges] 0 {A5R:A -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> A22R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A22R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:C -> A7R:G: adjacent_5p upward } 0 5 {A7R:G -> A6R:C: adjacent_3p downward } 0 6 {A6R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:G -> A8R:A: adjacent_5p } 0 9 {A8R:A -> A7R:G: adjacent_3p } 0 10 {A7R:G -> A20R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {A20R:A -> A7R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {A8R:A -> A19R:U: pairing antiparallel trans XXIV Hh/Ws } 0 13 {A19R:U -> A8R:A: pairing antiparallel trans XXIV Ws/Hh } 0 14 {A19R:U -> A20R:A: adjacent_5p } 0 15 {A20R:A -> A19R:U: adjacent_3p } 0 16 {A20R:A -> A21R:G: adjacent_5p upward } 0 17 {A21R:G -> A20R:A: adjacent_3p downward } 0 18 {A21R:G -> A22R:U: adjacent_5p upward } 0 19 {A22R:U -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:A 0 1 A3R:G 0 2 A4R:C 0 3 A5R:C 0 4 A30R:G 0 5 A31R:G 0 6 A32R:U 0 7 A33R:U 0 [Edges] 0 {A2R:A -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:A: adjacent_3p downward } 0 2 {A2R:A -> A33R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A33R:U -> A2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A32R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A32R:U -> A3R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A4R:C -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A31R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A30R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A30R:G -> A31R:G: adjacent_5p upward } 0 15 {A31R:G -> A30R:G: adjacent_3p downward } 0 16 {A31R:G -> A32R:U: adjacent_5p upward } 0 17 {A32R:U -> A31R:G: adjacent_3p downward } 0 18 {A32R:U -> A33R:U: adjacent_5p } 0 19 {A33R:U -> A32R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:C 0 2 A5R:C 0 3 A6R:G 0 4 A29R:C 0 5 A30R:G 0 6 A31R:G 0 7 A32R:U 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A32R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A32R:U -> A3R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A4R:C -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A31R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:C -> A6R:G: adjacent_5p } 0 9 {A6R:G -> A5R:C: adjacent_3p } 0 10 {A5R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A30R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A29R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:G -> A30R:G: outward } 0 15 {A30R:G -> A6R:G: outward } 0 16 {A29R:C -> A30R:G: adjacent_5p } 0 17 {A30R:G -> A29R:C: adjacent_3p } 0 18 {A30R:G -> A31R:G: adjacent_5p upward } 0 19 {A31R:G -> A30R:G: adjacent_3p downward } 0 20 {A31R:G -> A32R:U: adjacent_5p upward } 0 21 {A32R:U -> A31R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:C 0 2 A6R:G 0 3 A7R:U 0 4 A28R:A 0 5 A29R:C 0 6 A30R:G 0 7 A31R:G 0 [Edges] 0 {A4R:C -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A31R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:G: adjacent_5p } 0 5 {A6R:G -> A5R:C: adjacent_3p } 0 6 {A5R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A30R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> A7R:U: adjacent_5p upward } 0 9 {A7R:U -> A6R:G: adjacent_3p downward } 0 10 {A6R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A29R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:G -> A30R:G: outward } 0 13 {A30R:G -> A6R:G: outward } 0 14 {A7R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A28R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A28R:A -> A29R:C: adjacent_5p upward } 0 17 {A29R:C -> A28R:A: adjacent_3p downward } 0 18 {A29R:C -> A30R:G: adjacent_5p } 0 19 {A30R:G -> A29R:C: adjacent_3p } 0 20 {A30R:G -> A31R:G: adjacent_5p upward } 0 21 {A31R:G -> A30R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:G 0 2 A7R:U 0 3 A8R:A 0 4 A27R:U 0 5 A28R:A 0 6 A29R:C 0 7 A30R:G 0 [Edges] 0 {A5R:C -> A6R:G: adjacent_5p } 0 1 {A6R:G -> A5R:C: adjacent_3p } 0 2 {A5R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A30R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:G -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A29R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> A30R:G: outward } 0 9 {A30R:G -> A6R:G: outward } 0 10 {A7R:U -> A8R:A: adjacent_5p } 0 11 {A8R:A -> A7R:U: adjacent_3p } 0 12 {A7R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A28R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A8R:A -> A27R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 15 {A27R:U -> A8R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 16 {A8R:A -> A28R:A: outward } 0 17 {A28R:A -> A8R:A: outward } 0 18 {A27R:U -> A28R:A: adjacent_5p } 0 19 {A28R:A -> A27R:U: adjacent_3p } 0 20 {A28R:A -> A29R:C: adjacent_5p upward } 0 21 {A29R:C -> A28R:A: adjacent_3p downward } 0 22 {A29R:C -> A30R:G: adjacent_5p } 0 23 {A30R:G -> A29R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:C 0 2 A12R:G 0 3 A13R:A 0 4 A20R:U 0 5 A21R:C 0 6 A22R:G 0 7 A23R:C 0 [Edges] 0 {A10R:G -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:C -> A12R:G: adjacent_5p upward } 0 5 {A12R:G -> A11R:C: adjacent_3p downward } 0 6 {A11R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> A13R:A: adjacent_5p upward } 0 9 {A13R:A -> A12R:G: adjacent_3p downward } 0 10 {A12R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A21R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A20R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A20R:U -> A21R:C: adjacent_5p } 0 15 {A21R:C -> A20R:U: adjacent_3p } 0 16 {A21R:C -> A22R:G: adjacent_5p upward } 0 17 {A22R:G -> A21R:C: adjacent_3p downward } 0 18 {A22R:G -> A23R:C: adjacent_5p upward } 0 19 {A23R:C -> A22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:G 0 2 A13R:A 0 3 A14R:U 0 4 A19R:G 0 5 A20R:U 0 6 A21R:C 0 7 A22R:G 0 [Edges] 0 {A11R:C -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:C: adjacent_3p downward } 0 2 {A11R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:G -> A13R:A: adjacent_5p upward } 0 5 {A13R:A -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:A -> A14R:U: adjacent_5p upward } 0 9 {A14R:U -> A13R:A: adjacent_3p downward } 0 10 {A13R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A20R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A14R:U -> A19R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A19R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A19R:G -> A20R:U: adjacent_5p upward } 0 15 {A20R:U -> A19R:G: adjacent_3p downward } 0 16 {A20R:U -> A21R:C: adjacent_5p } 0 17 {A21R:C -> A20R:U: adjacent_3p } 0 18 {A21R:C -> A22R:G: adjacent_5p upward } 0 19 {A22R:G -> A21R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:A 0 2 A14R:U 0 3 A15R:G 0 4 A18R:A 0 5 A19R:G 0 6 A20R:U 0 7 A21R:C 0 [Edges] 0 {A12R:G -> A13R:A: adjacent_5p upward } 0 1 {A13R:A -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:A -> A14R:U: adjacent_5p upward } 0 5 {A14R:U -> A13R:A: adjacent_3p downward } 0 6 {A13R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A20R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A14R:U -> A15R:G: adjacent_5p upward } 0 9 {A15R:G -> A14R:U: adjacent_3p downward } 0 10 {A14R:U -> A19R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A19R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A15R:G -> A18R:A: pairing antiparallel trans one_hbond Ss/Hw } 0 13 {A18R:A -> A15R:G: pairing antiparallel trans one_hbond Hw/Ss } 0 14 {A18R:A -> A19R:G: adjacent_5p } 0 15 {A19R:G -> A18R:A: adjacent_3p } 0 16 {A19R:G -> A20R:U: adjacent_5p upward } 0 17 {A20R:U -> A19R:G: adjacent_3p downward } 0 18 {A20R:U -> A21R:C: adjacent_5p } 0 19 {A21R:C -> A20R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 C405R:U 0 1 C406R:G 0 2 C407R:U 0 3 C408R:G 0 4 C416R:C 0 5 C417R:A 0 6 C418R:C 0 7 C419R:A 0 [Edges] 0 {C405R:U -> C406R:G: adjacent_5p upward } 0 1 {C406R:G -> C405R:U: adjacent_3p downward } 0 2 {C405R:U -> C419R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C419R:A -> C405R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C406R:G -> C407R:U: adjacent_5p upward } 0 5 {C407R:U -> C406R:G: adjacent_3p downward } 0 6 {C406R:G -> C418R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C418R:C -> C406R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C406R:G -> C419R:A: outward } 0 9 {C419R:A -> C406R:G: outward } 0 10 {C407R:U -> C408R:G: adjacent_5p } 0 11 {C408R:G -> C407R:U: adjacent_3p } 0 12 {C407R:U -> C417R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {C417R:A -> C407R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {C408R:G -> C416R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C416R:C -> C408R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C408R:G -> C417R:A: outward } 0 17 {C417R:A -> C408R:G: outward } 0 18 {C416R:C -> C417R:A: adjacent_5p } 0 19 {C417R:A -> C416R:C: adjacent_3p } 0 20 {C417R:A -> C418R:C: adjacent_5p upward } 0 21 {C418R:C -> C417R:A: adjacent_3p downward } 0 22 {C418R:C -> C419R:A: adjacent_5p upward } 0 23 {C419R:A -> C418R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 D405R:U 0 1 D406R:G 0 2 D407R:U 0 3 D408R:G 0 4 E416R:C 0 5 E417R:A 0 6 E418R:C 0 7 E419R:A 0 [Edges] 0 {D405R:U -> D406R:G: adjacent_5p } 0 1 {D406R:G -> D405R:U: adjacent_3p } 0 2 {D405R:U -> E419R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {E419R:A -> D405R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D406R:G -> D407R:U: adjacent_5p upward } 0 5 {D407R:U -> D406R:G: adjacent_3p downward } 0 6 {D406R:G -> E418R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E418R:C -> D406R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D406R:G -> E419R:A: outward } 0 9 {E419R:A -> D406R:G: outward } 0 10 {D407R:U -> D408R:G: adjacent_5p upward } 0 11 {D408R:G -> D407R:U: adjacent_3p downward } 0 12 {D407R:U -> E417R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {E417R:A -> D407R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {D408R:G -> E416R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {E416R:C -> D408R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D408R:G -> E417R:A: outward } 0 17 {E417R:A -> D408R:G: outward } 0 18 {E416R:C -> E417R:A: adjacent_5p } 0 19 {E417R:A -> E416R:C: adjacent_3p } 0 20 {E417R:A -> E418R:C: adjacent_5p upward } 0 21 {E418R:C -> E417R:A: adjacent_3p downward } 0 22 {E418R:C -> E419R:A: adjacent_5p upward } 0 23 {E419R:A -> E418R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 D412R:G 0 1 D413R:A 0 2 D414R:U 0 3 D415R:C 0 4 E412R:G 0 5 E413R:A 0 6 E414R:U 0 7 E415R:C 0 [Edges] 0 {D412R:G -> D413R:A: adjacent_5p upward } 0 1 {D413R:A -> D412R:G: adjacent_3p downward } 0 2 {D412R:G -> E415R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E415R:C -> D412R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D413R:A -> D414R:U: adjacent_5p upward } 0 5 {D414R:U -> D413R:A: adjacent_3p downward } 0 6 {D413R:A -> E414R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {E414R:U -> D413R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D414R:U -> D415R:C: adjacent_5p } 0 9 {D415R:C -> D414R:U: adjacent_3p } 0 10 {D414R:U -> E413R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {E413R:A -> D414R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D415R:C -> E412R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {E412R:G -> D415R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {E412R:G -> E413R:A: adjacent_5p upward } 0 15 {E413R:A -> E412R:G: adjacent_3p downward } 0 16 {E413R:A -> E414R:U: adjacent_5p upward } 0 17 {E414R:U -> E413R:A: adjacent_3p downward } 0 18 {E414R:U -> E415R:C: adjacent_5p upward } 0 19 {E415R:C -> E414R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D416R:C 0 1 D417R:A 0 2 D418R:C 0 3 D419R:A 0 4 E405R:U 0 5 E406R:G 0 6 E407R:U 0 7 E408R:G 0 [Edges] 0 {D416R:C -> D417R:A: adjacent_5p upward } 0 1 {D417R:A -> D416R:C: adjacent_3p downward } 0 2 {D416R:C -> E408R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E408R:G -> D416R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D417R:A -> D418R:C: adjacent_5p upward } 0 5 {D418R:C -> D417R:A: adjacent_3p downward } 0 6 {D417R:A -> E407R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {E407R:U -> D417R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D417R:A -> E408R:G: outward } 0 9 {E408R:G -> D417R:A: outward } 0 10 {D418R:C -> D419R:A: adjacent_5p upward } 0 11 {D419R:A -> D418R:C: adjacent_3p downward } 0 12 {D418R:C -> E406R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {E406R:G -> D418R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D419R:A -> E405R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {E405R:U -> D419R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {D419R:A -> E406R:G: outward } 0 17 {E406R:G -> D419R:A: outward } 0 18 {E405R:U -> E406R:G: adjacent_5p upward } 0 19 {E406R:G -> E405R:U: adjacent_3p downward } 0 20 {E406R:G -> E407R:U: adjacent_5p upward } 0 21 {E407R:U -> E406R:G: adjacent_3p downward } 0 22 {E407R:U -> E408R:G: adjacent_5p } 0 23 {E408R:G -> E407R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:G 0 3 A5R:G 0 4 A30R:C 0 5 A31R:C 0 6 A32R:U 0 7 A33R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A33R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A33R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A32R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A32R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A31R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A30R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A30R:C -> A31R:C: adjacent_5p upward } 0 15 {A31R:C -> A30R:C: adjacent_3p downward } 0 16 {A31R:C -> A32R:U: adjacent_5p upward } 0 17 {A32R:U -> A31R:C: adjacent_3p downward } 0 18 {A32R:U -> A33R:C: adjacent_5p } 0 19 {A33R:C -> A32R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:G 0 2 A5R:G 0 3 A6R:A 0 4 A29R:U 0 5 A30R:C 0 6 A31R:C 0 7 A32R:U 0 [Edges] 0 {A3R:A -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A32R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A32R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A31R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A6R:A: adjacent_5p upward } 0 9 {A6R:A -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A30R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:A -> A29R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A29R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A29R:U -> A30R:C: adjacent_5p } 0 15 {A30R:C -> A29R:U: adjacent_3p } 0 16 {A30R:C -> A31R:C: adjacent_5p upward } 0 17 {A31R:C -> A30R:C: adjacent_3p downward } 0 18 {A31R:C -> A32R:U: adjacent_5p upward } 0 19 {A32R:U -> A31R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:G 0 2 A6R:A 0 3 A7R:C 0 4 A28R:G 0 5 A29R:U 0 6 A30R:C 0 7 A31R:C 0 [Edges] 0 {A4R:G -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A31R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:G -> A6R:A: adjacent_5p upward } 0 5 {A6R:A -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A30R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:A -> A7R:C: adjacent_5p upward } 0 9 {A7R:C -> A6R:A: adjacent_3p downward } 0 10 {A6R:A -> A29R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A29R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A28R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A28R:G -> A29R:U: adjacent_5p upward } 0 15 {A29R:U -> A28R:G: adjacent_3p downward } 0 16 {A29R:U -> A30R:C: adjacent_5p } 0 17 {A30R:C -> A29R:U: adjacent_3p } 0 18 {A30R:C -> A31R:C: adjacent_5p upward } 0 19 {A31R:C -> A30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A14R:C 0 1 A15R:A 0 2 A16R:C 0 3 A17R:G 0 4 A24R:C 0 5 A25R:G 0 6 A26R:U 0 7 A27R:G 0 [Edges] 0 {A14R:C -> A15R:A: adjacent_5p upward } 0 1 {A15R:A -> A14R:C: adjacent_3p downward } 0 2 {A14R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A15R:A -> A16R:C: adjacent_5p upward } 0 5 {A16R:C -> A15R:A: adjacent_3p downward } 0 6 {A15R:A -> A26R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A26R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A15R:A -> A27R:G: outward } 0 9 {A27R:G -> A15R:A: outward } 0 10 {A16R:C -> A17R:G: adjacent_5p upward } 0 11 {A17R:G -> A16R:C: adjacent_3p downward } 0 12 {A16R:C -> A25R:G: pairing antiparallel cis Ww/Ww } 0 13 {A25R:G -> A16R:C: pairing antiparallel cis Ww/Ww } 0 14 {A17R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A24R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A17R:G -> A25R:G: outward } 0 17 {A25R:G -> A17R:G: outward } 0 18 {A24R:C -> A25R:G: adjacent_5p } 0 19 {A25R:G -> A24R:C: adjacent_3p } 0 20 {A25R:G -> A26R:U: adjacent_5p upward } 0 21 {A26R:U -> A25R:G: adjacent_3p downward } 0 22 {A26R:U -> A27R:G: adjacent_5p upward } 0 23 {A27R:G -> A26R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A15R:A 0 1 A16R:C 0 2 A17R:G 0 3 A18R:G 0 4 A23R:C 0 5 A24R:C 0 6 A25R:G 0 7 A26R:U 0 [Edges] 0 {A15R:A -> A16R:C: adjacent_5p upward } 0 1 {A16R:C -> A15R:A: adjacent_3p downward } 0 2 {A15R:A -> A26R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A26R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A16R:C -> A17R:G: adjacent_5p upward } 0 5 {A17R:G -> A16R:C: adjacent_3p downward } 0 6 {A16R:C -> A25R:G: pairing antiparallel cis Ww/Ww } 0 7 {A25R:G -> A16R:C: pairing antiparallel cis Ww/Ww } 0 8 {A17R:G -> A18R:G: adjacent_5p upward } 0 9 {A18R:G -> A17R:G: adjacent_3p downward } 0 10 {A17R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A24R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A17R:G -> A25R:G: outward } 0 13 {A25R:G -> A17R:G: outward } 0 14 {A18R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A23R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A23R:C -> A24R:C: adjacent_5p upward } 0 17 {A24R:C -> A23R:C: adjacent_3p downward } 0 18 {A24R:C -> A25R:G: adjacent_5p } 0 19 {A25R:G -> A24R:C: adjacent_3p } 0 20 {A25R:G -> A26R:U: adjacent_5p upward } 0 21 {A26R:U -> A25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A16R:C 0 1 A17R:G 0 2 A18R:G 0 3 A19R:G 0 4 A22R:A 0 5 A23R:C 0 6 A24R:C 0 7 A25R:G 0 [Edges] 0 {A16R:C -> A17R:G: adjacent_5p upward } 0 1 {A17R:G -> A16R:C: adjacent_3p downward } 0 2 {A16R:C -> A25R:G: pairing antiparallel cis Ww/Ww } 0 3 {A25R:G -> A16R:C: pairing antiparallel cis Ww/Ww } 0 4 {A17R:G -> A18R:G: adjacent_5p upward } 0 5 {A18R:G -> A17R:G: adjacent_3p downward } 0 6 {A17R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A24R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A17R:G -> A25R:G: outward } 0 9 {A25R:G -> A17R:G: outward } 0 10 {A18R:G -> A19R:G: adjacent_5p upward } 0 11 {A19R:G -> A18R:G: adjacent_3p downward } 0 12 {A18R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A23R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A19R:G -> A22R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 15 {A22R:A -> A19R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 16 {A22R:A -> A23R:C: adjacent_5p } 0 17 {A23R:C -> A22R:A: adjacent_3p } 0 18 {A23R:C -> A24R:C: adjacent_5p upward } 0 19 {A24R:C -> A23R:C: adjacent_3p downward } 0 20 {A24R:C -> A25R:G: adjacent_5p } 0 21 {A25R:G -> A24R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:G 0 3 A5R:G 0 4 A30R:C 0 5 A31R:C 0 6 A32R:U 0 7 A33R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A33R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A33R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A32R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A32R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A31R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A30R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A30R:C -> A31R:C: adjacent_5p upward } 0 15 {A31R:C -> A30R:C: adjacent_3p downward } 0 16 {A31R:C -> A32R:U: adjacent_5p upward } 0 17 {A32R:U -> A31R:C: adjacent_3p downward } 0 18 {A32R:U -> A33R:C: adjacent_5p upward } 0 19 {A33R:C -> A32R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:G 0 2 A5R:G 0 3 A6R:A 0 4 A29R:U 0 5 A30R:C 0 6 A31R:C 0 7 A32R:U 0 [Edges] 0 {A3R:A -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A32R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A32R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A31R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A6R:A: adjacent_5p upward } 0 9 {A6R:A -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A30R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:A -> A29R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A29R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A29R:U -> A30R:C: adjacent_5p upward } 0 15 {A30R:C -> A29R:U: adjacent_3p downward } 0 16 {A30R:C -> A31R:C: adjacent_5p upward } 0 17 {A31R:C -> A30R:C: adjacent_3p downward } 0 18 {A31R:C -> A32R:U: adjacent_5p upward } 0 19 {A32R:U -> A31R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:G 0 2 A6R:A 0 3 A7R:C 0 4 A28R:G 0 5 A29R:U 0 6 A30R:C 0 7 A31R:C 0 [Edges] 0 {A4R:G -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A31R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:G -> A6R:A: adjacent_5p upward } 0 5 {A6R:A -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A30R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:A -> A7R:C: adjacent_5p upward } 0 9 {A7R:C -> A6R:A: adjacent_3p downward } 0 10 {A6R:A -> A29R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A29R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A28R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A28R:G -> A29R:U: adjacent_5p upward } 0 15 {A29R:U -> A28R:G: adjacent_3p downward } 0 16 {A29R:U -> A30R:C: adjacent_5p upward } 0 17 {A30R:C -> A29R:U: adjacent_3p downward } 0 18 {A30R:C -> A31R:C: adjacent_5p upward } 0 19 {A31R:C -> A30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A14R:C 0 1 A15R:A 0 2 A16R:C 0 3 A17R:G 0 4 A24R:C 0 5 A25R:G 0 6 A26R:U 0 7 A27R:G 0 [Edges] 0 {A14R:C -> A15R:A: adjacent_5p upward } 0 1 {A15R:A -> A14R:C: adjacent_3p downward } 0 2 {A14R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A15R:A -> A16R:C: adjacent_5p upward } 0 5 {A16R:C -> A15R:A: adjacent_3p downward } 0 6 {A15R:A -> A26R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A26R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A16R:C -> A17R:G: adjacent_5p } 0 9 {A17R:G -> A16R:C: adjacent_3p } 0 10 {A16R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A25R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A17R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A24R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A17R:G -> A25R:G: outward } 0 15 {A25R:G -> A17R:G: outward } 0 16 {A24R:C -> A25R:G: adjacent_5p upward } 0 17 {A25R:G -> A24R:C: adjacent_3p downward } 0 18 {A25R:G -> A26R:U: adjacent_5p upward } 0 19 {A26R:U -> A25R:G: adjacent_3p downward } 0 20 {A26R:U -> A27R:G: adjacent_5p } 0 21 {A27R:G -> A26R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A15R:A 0 1 A16R:C 0 2 A17R:G 0 3 A18R:G 0 4 A23R:C 0 5 A24R:C 0 6 A25R:G 0 7 A26R:U 0 [Edges] 0 {A15R:A -> A16R:C: adjacent_5p upward } 0 1 {A16R:C -> A15R:A: adjacent_3p downward } 0 2 {A15R:A -> A26R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A26R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A16R:C -> A17R:G: adjacent_5p } 0 5 {A17R:G -> A16R:C: adjacent_3p } 0 6 {A16R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A25R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A17R:G -> A18R:G: adjacent_5p upward } 0 9 {A18R:G -> A17R:G: adjacent_3p downward } 0 10 {A17R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A24R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A17R:G -> A25R:G: outward } 0 13 {A25R:G -> A17R:G: outward } 0 14 {A18R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A23R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A23R:C -> A24R:C: adjacent_5p upward } 0 17 {A24R:C -> A23R:C: adjacent_3p downward } 0 18 {A24R:C -> A25R:G: adjacent_5p upward } 0 19 {A25R:G -> A24R:C: adjacent_3p downward } 0 20 {A25R:G -> A26R:U: adjacent_5p upward } 0 21 {A26R:U -> A25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A16R:C 0 1 A17R:G 0 2 A18R:G 0 3 A19R:G 0 4 A22R:A 0 5 A23R:C 0 6 A24R:C 0 7 A25R:G 0 [Edges] 0 {A16R:C -> A17R:G: adjacent_5p } 0 1 {A17R:G -> A16R:C: adjacent_3p } 0 2 {A16R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A17R:G -> A18R:G: adjacent_5p upward } 0 5 {A18R:G -> A17R:G: adjacent_3p downward } 0 6 {A17R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A24R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A17R:G -> A25R:G: outward } 0 9 {A25R:G -> A17R:G: outward } 0 10 {A18R:G -> A19R:G: adjacent_5p upward } 0 11 {A19R:G -> A18R:G: adjacent_3p downward } 0 12 {A18R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A23R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A19R:G -> A22R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 15 {A22R:A -> A19R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 16 {A22R:A -> A23R:C: adjacent_5p } 0 17 {A23R:C -> A22R:A: adjacent_3p } 0 18 {A23R:C -> A24R:C: adjacent_5p upward } 0 19 {A24R:C -> A23R:C: adjacent_3p downward } 0 20 {A24R:C -> A25R:G: adjacent_5p upward } 0 21 {A25R:G -> A24R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:G 0 2 4R:A 0 3 5R:A 0 4 32R:U 0 5 33R:U 0 6 34R:C 0 7 35R:C 0 [Edges] 0 {2R:G -> 3R:G: adjacent_5p upward } 0 1 {3R:G -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 35R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {35R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:G -> 4R:A: adjacent_5p upward } 0 5 {4R:A -> 3R:G: adjacent_3p downward } 0 6 {3R:G -> 34R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {34R:C -> 3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:A -> 5R:A: adjacent_5p upward } 0 9 {5R:A -> 4R:A: adjacent_3p downward } 0 10 {4R:A -> 33R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {33R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {5R:A -> 32R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {32R:U -> 5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {32R:U -> 33R:U: adjacent_5p upward } 0 15 {33R:U -> 32R:U: adjacent_3p downward } 0 16 {33R:U -> 34R:C: adjacent_5p upward } 0 17 {34R:C -> 33R:U: adjacent_3p downward } 0 18 {34R:C -> 35R:C: adjacent_5p upward } 0 19 {35R:C -> 34R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 3R:G 0 1 4R:A 0 2 5R:A 0 3 6R:G 0 4 31R:C 0 5 32R:U 0 6 33R:U 0 7 34R:C 0 [Edges] 0 {3R:G -> 4R:A: adjacent_5p upward } 0 1 {4R:A -> 3R:G: adjacent_3p downward } 0 2 {3R:G -> 34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {34R:C -> 3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:A -> 5R:A: adjacent_5p upward } 0 5 {5R:A -> 4R:A: adjacent_3p downward } 0 6 {4R:A -> 33R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {33R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {5R:A -> 6R:G: adjacent_5p upward } 0 9 {6R:G -> 5R:A: adjacent_3p downward } 0 10 {5R:A -> 32R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {32R:U -> 5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {6R:G -> 31R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {31R:C -> 6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {31R:C -> 32R:U: adjacent_5p upward } 0 15 {32R:U -> 31R:C: adjacent_3p downward } 0 16 {32R:U -> 33R:U: adjacent_5p upward } 0 17 {33R:U -> 32R:U: adjacent_3p downward } 0 18 {33R:U -> 34R:C: adjacent_5p upward } 0 19 {34R:C -> 33R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 18R:C 0 1 19R:G 0 2 20R:G 0 3 21R:C 0 4 26R:G 0 5 27R:C 0 6 28R:C 0 7 29R:G 0 [Edges] 0 {18R:C -> 19R:G: adjacent_5p } 0 1 {19R:G -> 18R:C: adjacent_3p } 0 2 {18R:C -> 29R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {29R:G -> 18R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {19R:G -> 20R:G: adjacent_5p upward } 0 5 {20R:G -> 19R:G: adjacent_3p downward } 0 6 {19R:G -> 28R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {28R:C -> 19R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {19R:G -> 29R:G: outward } 0 9 {29R:G -> 19R:G: outward } 0 10 {20R:G -> 21R:C: adjacent_5p upward } 0 11 {21R:C -> 20R:G: adjacent_3p downward } 0 12 {20R:G -> 27R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {27R:C -> 20R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {21R:C -> 26R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {26R:G -> 21R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {26R:G -> 27R:C: adjacent_5p upward } 0 17 {27R:C -> 26R:G: adjacent_3p downward } 0 18 {27R:C -> 28R:C: adjacent_5p } 0 19 {28R:C -> 27R:C: adjacent_3p } 0 20 {28R:C -> 29R:G: adjacent_5p upward } 0 21 {29R:G -> 28R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 19R:G 0 1 20R:G 0 2 21R:C 0 3 22R:U 0 4 25R:G 0 5 26R:G 0 6 27R:C 0 7 28R:C 0 [Edges] 0 {19R:G -> 20R:G: adjacent_5p upward } 0 1 {20R:G -> 19R:G: adjacent_3p downward } 0 2 {19R:G -> 28R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {28R:C -> 19R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {20R:G -> 21R:C: adjacent_5p upward } 0 5 {21R:C -> 20R:G: adjacent_3p downward } 0 6 {20R:G -> 27R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {27R:C -> 20R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {21R:C -> 22R:U: adjacent_5p upward } 0 9 {22R:U -> 21R:C: adjacent_3p downward } 0 10 {21R:C -> 26R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {26R:G -> 21R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {22R:U -> 25R:G: pairing parallel trans one_hbond Ws/Ww } 0 13 {25R:G -> 22R:U: pairing parallel trans one_hbond Ww/Ws } 0 14 {25R:G -> 26R:G: adjacent_5p } 0 15 {26R:G -> 25R:G: adjacent_3p } 0 16 {26R:G -> 27R:C: adjacent_5p upward } 0 17 {27R:C -> 26R:G: adjacent_3p downward } 0 18 {27R:C -> 28R:C: adjacent_5p } 0 19 {28R:C -> 27R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B2R:G 0 1 B3R:C 0 2 B4R:G 0 3 B5R:C 0 4 C16R:G 0 5 C17R:C 0 6 C18R:G 0 7 C19R:C 0 [Edges] 0 {B2R:G -> B3R:C: adjacent_5p upward } 0 1 {B3R:C -> B2R:G: adjacent_3p downward } 0 2 {B2R:G -> C19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C19R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B3R:C -> B4R:G: adjacent_5p } 0 5 {B4R:G -> B3R:C: adjacent_3p } 0 6 {B3R:C -> C18R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C18R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B4R:G -> B5R:C: adjacent_5p upward } 0 9 {B5R:C -> B4R:G: adjacent_3p downward } 0 10 {B4R:G -> C17R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C17R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B4R:G -> C18R:G: outward } 0 13 {C18R:G -> B4R:G: outward } 0 14 {B5R:C -> C16R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {C16R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {C16R:G -> C17R:C: adjacent_5p upward } 0 17 {C17R:C -> C16R:G: adjacent_3p downward } 0 18 {C17R:C -> C18R:G: adjacent_5p } 0 19 {C18R:G -> C17R:C: adjacent_3p } 0 20 {C18R:G -> C19R:C: adjacent_5p upward } 0 21 {C19R:C -> C18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B3R:C 0 1 B4R:G 0 2 B5R:C 0 3 B6R:G 0 4 C15R:C 0 5 C16R:G 0 6 C17R:C 0 7 C18R:G 0 [Edges] 0 {B3R:C -> B4R:G: adjacent_5p } 0 1 {B4R:G -> B3R:C: adjacent_3p } 0 2 {B3R:C -> C18R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C18R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B4R:G -> B5R:C: adjacent_5p upward } 0 5 {B5R:C -> B4R:G: adjacent_3p downward } 0 6 {B4R:G -> C17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C17R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B4R:G -> C18R:G: outward } 0 9 {C18R:G -> B4R:G: outward } 0 10 {B5R:C -> B6R:G: adjacent_5p } 0 11 {B6R:G -> B5R:C: adjacent_3p } 0 12 {B5R:C -> C16R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C16R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B6R:G -> C15R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C15R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B6R:G -> C16R:G: outward } 0 17 {C16R:G -> B6R:G: outward } 0 18 {C15R:C -> C16R:G: adjacent_5p upward } 0 19 {C16R:G -> C15R:C: adjacent_3p downward } 0 20 {C16R:G -> C17R:C: adjacent_5p upward } 0 21 {C17R:C -> C16R:G: adjacent_3p downward } 0 22 {C17R:C -> C18R:G: adjacent_5p } 0 23 {C18R:G -> C17R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 B4R:G 0 1 B5R:C 0 2 B6R:G 0 3 B7R:C 0 4 C14R:G 0 5 C15R:C 0 6 C16R:G 0 7 C17R:C 0 [Edges] 0 {B4R:G -> B5R:C: adjacent_5p upward } 0 1 {B5R:C -> B4R:G: adjacent_3p downward } 0 2 {B4R:G -> C17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C17R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B5R:C -> B6R:G: adjacent_5p } 0 5 {B6R:G -> B5R:C: adjacent_3p } 0 6 {B5R:C -> C16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C16R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B6R:G -> B7R:C: adjacent_5p upward } 0 9 {B7R:C -> B6R:G: adjacent_3p downward } 0 10 {B6R:G -> C15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C15R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B6R:G -> C16R:G: outward } 0 13 {C16R:G -> B6R:G: outward } 0 14 {B7R:C -> C14R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {C14R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {C14R:G -> C15R:C: adjacent_5p upward } 0 17 {C15R:C -> C14R:G: adjacent_3p downward } 0 18 {C15R:C -> C16R:G: adjacent_5p upward } 0 19 {C16R:G -> C15R:C: adjacent_3p downward } 0 20 {C16R:G -> C17R:C: adjacent_5p upward } 0 21 {C17R:C -> C16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B5R:C 0 1 B6R:G 0 2 B7R:C 0 3 B8R:G 0 4 C13R:C 0 5 C14R:G 0 6 C15R:C 0 7 C16R:G 0 [Edges] 0 {B5R:C -> B6R:G: adjacent_5p } 0 1 {B6R:G -> B5R:C: adjacent_3p } 0 2 {B5R:C -> C16R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C16R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B6R:G -> B7R:C: adjacent_5p upward } 0 5 {B7R:C -> B6R:G: adjacent_3p downward } 0 6 {B6R:G -> C15R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C15R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B6R:G -> C16R:G: outward } 0 9 {C16R:G -> B6R:G: outward } 0 10 {B7R:C -> B8R:G: adjacent_5p upward } 0 11 {B8R:G -> B7R:C: adjacent_3p downward } 0 12 {B7R:C -> C14R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C14R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B8R:G -> C13R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C13R:C -> B8R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B8R:G -> C14R:G: outward } 0 17 {C14R:G -> B8R:G: outward } 0 18 {C13R:C -> C14R:G: adjacent_5p } 0 19 {C14R:G -> C13R:C: adjacent_3p } 0 20 {C14R:G -> C15R:C: adjacent_5p upward } 0 21 {C15R:C -> C14R:G: adjacent_3p downward } 0 22 {C15R:C -> C16R:G: adjacent_5p upward } 0 23 {C16R:G -> C15R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 B6R:G 0 1 B7R:C 0 2 B8R:G 0 3 B9R:C 0 4 C12R:G 0 5 C13R:C 0 6 C14R:G 0 7 C15R:C 0 [Edges] 0 {B6R:G -> B7R:C: adjacent_5p upward } 0 1 {B7R:C -> B6R:G: adjacent_3p downward } 0 2 {B6R:G -> C15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C15R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B7R:C -> B8R:G: adjacent_5p upward } 0 5 {B8R:G -> B7R:C: adjacent_3p downward } 0 6 {B7R:C -> C14R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C14R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B8R:G -> B9R:C: adjacent_5p upward } 0 9 {B9R:C -> B8R:G: adjacent_3p downward } 0 10 {B8R:G -> C13R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C13R:C -> B8R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B8R:G -> C14R:G: outward } 0 13 {C14R:G -> B8R:G: outward } 0 14 {B9R:C -> C12R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {C12R:G -> B9R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {C12R:G -> C13R:C: adjacent_5p upward } 0 17 {C13R:C -> C12R:G: adjacent_3p downward } 0 18 {C13R:C -> C14R:G: adjacent_5p } 0 19 {C14R:G -> C13R:C: adjacent_3p } 0 20 {C14R:G -> C15R:C: adjacent_5p upward } 0 21 {C15R:C -> C14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D22R:G 0 1 D23R:C 0 2 D24R:G 0 3 D25R:C 0 4 E36R:G 0 5 E37R:C 0 6 E38R:G 0 7 E39R:C 0 [Edges] 0 {D22R:G -> D23R:C: adjacent_5p upward } 0 1 {D23R:C -> D22R:G: adjacent_3p downward } 0 2 {D22R:G -> E39R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E39R:C -> D22R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D23R:C -> D24R:G: adjacent_5p upward } 0 5 {D24R:G -> D23R:C: adjacent_3p downward } 0 6 {D23R:C -> E38R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E38R:G -> D23R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D24R:G -> D25R:C: adjacent_5p upward } 0 9 {D25R:C -> D24R:G: adjacent_3p downward } 0 10 {D24R:G -> E37R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E37R:C -> D24R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D24R:G -> E38R:G: outward } 0 13 {E38R:G -> D24R:G: outward } 0 14 {D25R:C -> E36R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {E36R:G -> D25R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {E36R:G -> E37R:C: adjacent_5p upward } 0 17 {E37R:C -> E36R:G: adjacent_3p downward } 0 18 {E37R:C -> E38R:G: adjacent_5p } 0 19 {E38R:G -> E37R:C: adjacent_3p } 0 20 {E38R:G -> E39R:C: adjacent_5p upward } 0 21 {E39R:C -> E38R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D23R:C 0 1 D24R:G 0 2 D25R:C 0 3 D26R:G 0 4 E35R:C 0 5 E36R:G 0 6 E37R:C 0 7 E38R:G 0 [Edges] 0 {D23R:C -> D24R:G: adjacent_5p upward } 0 1 {D24R:G -> D23R:C: adjacent_3p downward } 0 2 {D23R:C -> E38R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E38R:G -> D23R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D24R:G -> D25R:C: adjacent_5p upward } 0 5 {D25R:C -> D24R:G: adjacent_3p downward } 0 6 {D24R:G -> E37R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E37R:C -> D24R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D24R:G -> E38R:G: outward } 0 9 {E38R:G -> D24R:G: outward } 0 10 {D25R:C -> D26R:G: adjacent_5p } 0 11 {D26R:G -> D25R:C: adjacent_3p } 0 12 {D25R:C -> E36R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {E36R:G -> D25R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D26R:G -> E35R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {E35R:C -> D26R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D26R:G -> E36R:G: outward } 0 17 {E36R:G -> D26R:G: outward } 0 18 {E35R:C -> E36R:G: adjacent_5p upward } 0 19 {E36R:G -> E35R:C: adjacent_3p downward } 0 20 {E36R:G -> E37R:C: adjacent_5p upward } 0 21 {E37R:C -> E36R:G: adjacent_3p downward } 0 22 {E37R:C -> E38R:G: adjacent_5p } 0 23 {E38R:G -> E37R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 D24R:G 0 1 D25R:C 0 2 D26R:G 0 3 D27R:C 0 4 E34R:G 0 5 E35R:C 0 6 E36R:G 0 7 E37R:C 0 [Edges] 0 {D24R:G -> D25R:C: adjacent_5p upward } 0 1 {D25R:C -> D24R:G: adjacent_3p downward } 0 2 {D24R:G -> E37R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E37R:C -> D24R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D25R:C -> D26R:G: adjacent_5p } 0 5 {D26R:G -> D25R:C: adjacent_3p } 0 6 {D25R:C -> E36R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E36R:G -> D25R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D26R:G -> D27R:C: adjacent_5p upward } 0 9 {D27R:C -> D26R:G: adjacent_3p downward } 0 10 {D26R:G -> E35R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E35R:C -> D26R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D26R:G -> E36R:G: outward } 0 13 {E36R:G -> D26R:G: outward } 0 14 {D27R:C -> E34R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {E34R:G -> D27R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {E34R:G -> E35R:C: adjacent_5p upward } 0 17 {E35R:C -> E34R:G: adjacent_3p downward } 0 18 {E35R:C -> E36R:G: adjacent_5p upward } 0 19 {E36R:G -> E35R:C: adjacent_3p downward } 0 20 {E36R:G -> E37R:C: adjacent_5p upward } 0 21 {E37R:C -> E36R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D25R:C 0 1 D26R:G 0 2 D27R:C 0 3 D28R:G 0 4 E33R:C 0 5 E34R:G 0 6 E35R:C 0 7 E36R:G 0 [Edges] 0 {D25R:C -> D26R:G: adjacent_5p } 0 1 {D26R:G -> D25R:C: adjacent_3p } 0 2 {D25R:C -> E36R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E36R:G -> D25R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D26R:G -> D27R:C: adjacent_5p upward } 0 5 {D27R:C -> D26R:G: adjacent_3p downward } 0 6 {D26R:G -> E35R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E35R:C -> D26R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D26R:G -> E36R:G: outward } 0 9 {E36R:G -> D26R:G: outward } 0 10 {D27R:C -> D28R:G: adjacent_5p } 0 11 {D28R:G -> D27R:C: adjacent_3p } 0 12 {D27R:C -> E34R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {E34R:G -> D27R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D28R:G -> E33R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {E33R:C -> D28R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D28R:G -> E34R:G: outward } 0 17 {E34R:G -> D28R:G: outward } 0 18 {E33R:C -> E34R:G: adjacent_5p } 0 19 {E34R:G -> E33R:C: adjacent_3p } 0 20 {E34R:G -> E35R:C: adjacent_5p upward } 0 21 {E35R:C -> E34R:G: adjacent_3p downward } 0 22 {E35R:C -> E36R:G: adjacent_5p upward } 0 23 {E36R:G -> E35R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 D26R:G 0 1 D27R:C 0 2 D28R:G 0 3 D29R:C 0 4 E32R:G 0 5 E33R:C 0 6 E34R:G 0 7 E35R:C 0 [Edges] 0 {D26R:G -> D27R:C: adjacent_5p upward } 0 1 {D27R:C -> D26R:G: adjacent_3p downward } 0 2 {D26R:G -> E35R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E35R:C -> D26R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D27R:C -> D28R:G: adjacent_5p } 0 5 {D28R:G -> D27R:C: adjacent_3p } 0 6 {D27R:C -> E34R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E34R:G -> D27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D28R:G -> D29R:C: adjacent_5p upward } 0 9 {D29R:C -> D28R:G: adjacent_3p downward } 0 10 {D28R:G -> E33R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E33R:C -> D28R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D28R:G -> E34R:G: outward } 0 13 {E34R:G -> D28R:G: outward } 0 14 {D29R:C -> E32R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {E32R:G -> D29R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {E32R:G -> E33R:C: adjacent_5p upward } 0 17 {E33R:C -> E32R:G: adjacent_3p downward } 0 18 {E33R:C -> E34R:G: adjacent_5p } 0 19 {E34R:G -> E33R:C: adjacent_3p } 0 20 {E34R:G -> E35R:C: adjacent_5p upward } 0 21 {E35R:C -> E34R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:A 0 3 A5R:C 0 4 A26R:G 0 5 A27R:U 0 6 A28R:G 0 7 A29R:U 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A29R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A29R:U -> A2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A3R:C -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A28R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A27R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A27R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A4R:A -> A28R:G: outward } 0 13 {A28R:G -> A4R:A: outward } 0 14 {A5R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A26R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A26R:G -> A27R:U: adjacent_5p upward } 0 17 {A27R:U -> A26R:G: adjacent_3p downward } 0 18 {A27R:U -> A28R:G: adjacent_5p upward } 0 19 {A28R:G -> A27R:U: adjacent_3p downward } 0 20 {A28R:G -> A29R:U: adjacent_5p upward } 0 21 {A29R:U -> A28R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:A 0 2 A5R:C 0 3 A6R:U 0 4 A25R:U 0 5 A26R:G 0 6 A27R:U 0 7 A28R:G 0 [Edges] 0 {A3R:C -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A28R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A27R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A27R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A28R:G: outward } 0 9 {A28R:G -> A4R:A: outward } 0 10 {A5R:C -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:C: adjacent_3p downward } 0 12 {A5R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A26R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:U -> A25R:U: pairing antiparallel cis XVI Ws/Ww } 0 15 {A25R:U -> A6R:U: pairing antiparallel cis XVI Ww/Ws } 0 16 {A25R:U -> A26R:G: adjacent_5p upward } 0 17 {A26R:G -> A25R:U: adjacent_3p downward } 0 18 {A26R:G -> A27R:U: adjacent_5p upward } 0 19 {A27R:U -> A26R:G: adjacent_3p downward } 0 20 {A27R:U -> A28R:G: adjacent_5p upward } 0 21 {A28R:G -> A27R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:C 0 2 A6R:U 0 3 A7R:C 0 4 A24R:U 0 5 A25R:U 0 6 A26R:G 0 7 A27R:U 0 [Edges] 0 {A4R:A -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> A27R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A27R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:C -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A26R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:U -> A7R:C: adjacent_5p upward } 0 9 {A7R:C -> A6R:U: adjacent_3p downward } 0 10 {A6R:U -> A25R:U: pairing antiparallel cis XVI Ws/Ww } 0 11 {A25R:U -> A6R:U: pairing antiparallel cis XVI Ww/Ws } 0 12 {A7R:C -> A24R:U: pairing antiparallel cis 106 Ww/Ww } 0 13 {A24R:U -> A7R:C: pairing antiparallel cis 106 Ww/Ww } 0 14 {A24R:U -> A25R:U: adjacent_5p upward } 0 15 {A25R:U -> A24R:U: adjacent_3p downward } 0 16 {A25R:U -> A26R:G: adjacent_5p upward } 0 17 {A26R:G -> A25R:U: adjacent_3p downward } 0 18 {A26R:G -> A27R:U: adjacent_5p upward } 0 19 {A27R:U -> A26R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:U 0 2 A7R:C 0 3 A8R:U 0 4 A23R:U 0 5 A24R:U 0 6 A25R:U 0 7 A26R:G 0 [Edges] 0 {A5R:C -> A6R:U: adjacent_5p upward } 0 1 {A6R:U -> A5R:C: adjacent_3p downward } 0 2 {A5R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A26R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:U -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:U: adjacent_3p downward } 0 6 {A6R:U -> A25R:U: pairing antiparallel cis XVI Ws/Ww } 0 7 {A25R:U -> A6R:U: pairing antiparallel cis XVI Ww/Ws } 0 8 {A7R:C -> A8R:U: adjacent_5p } 0 9 {A8R:U -> A7R:C: adjacent_3p } 0 10 {A7R:C -> A24R:U: pairing antiparallel cis 106 Ww/Ww } 0 11 {A24R:U -> A7R:C: pairing antiparallel cis 106 Ww/Ww } 0 12 {A8R:U -> A23R:U: pairing antiparallel cis XVI Ww/Ws } 0 13 {A23R:U -> A8R:U: pairing antiparallel cis XVI Ws/Ww } 0 14 {A23R:U -> A24R:U: adjacent_5p upward } 0 15 {A24R:U -> A23R:U: adjacent_3p downward } 0 16 {A24R:U -> A25R:U: adjacent_5p upward } 0 17 {A25R:U -> A24R:U: adjacent_3p downward } 0 18 {A25R:U -> A26R:G: adjacent_5p upward } 0 19 {A26R:G -> A25R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:U 0 1 A7R:C 0 2 A8R:U 0 3 A9R:G 0 4 A22R:C 0 5 A23R:U 0 6 A24R:U 0 7 A25R:U 0 [Edges] 0 {A6R:U -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:U: adjacent_3p downward } 0 2 {A6R:U -> A25R:U: pairing antiparallel cis XVI Ws/Ww } 0 3 {A25R:U -> A6R:U: pairing antiparallel cis XVI Ww/Ws } 0 4 {A7R:C -> A8R:U: adjacent_5p } 0 5 {A8R:U -> A7R:C: adjacent_3p } 0 6 {A7R:C -> A24R:U: pairing antiparallel cis 106 Ww/Ww } 0 7 {A24R:U -> A7R:C: pairing antiparallel cis 106 Ww/Ww } 0 8 {A8R:U -> A9R:G: adjacent_5p upward } 0 9 {A9R:G -> A8R:U: adjacent_3p downward } 0 10 {A8R:U -> A23R:U: pairing antiparallel cis XVI Ww/Ws } 0 11 {A23R:U -> A8R:U: pairing antiparallel cis XVI Ws/Ww } 0 12 {A9R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A22R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A22R:C -> A23R:U: adjacent_5p upward } 0 15 {A23R:U -> A22R:C: adjacent_3p downward } 0 16 {A23R:U -> A24R:U: adjacent_5p upward } 0 17 {A24R:U -> A23R:U: adjacent_3p downward } 0 18 {A24R:U -> A25R:U: adjacent_5p upward } 0 19 {A25R:U -> A24R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:U 0 2 A9R:G 0 3 A10R:G 0 4 A21R:C 0 5 A22R:C 0 6 A23R:U 0 7 A24R:U 0 [Edges] 0 {A7R:C -> A8R:U: adjacent_5p } 0 1 {A8R:U -> A7R:C: adjacent_3p } 0 2 {A7R:C -> A24R:U: pairing antiparallel cis 106 Ww/Ww } 0 3 {A24R:U -> A7R:C: pairing antiparallel cis 106 Ww/Ww } 0 4 {A8R:U -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> A23R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {A23R:U -> A8R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {A9R:G -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A22R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A21R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A21R:C -> A22R:C: adjacent_5p upward } 0 15 {A22R:C -> A21R:C: adjacent_3p downward } 0 16 {A22R:C -> A23R:U: adjacent_5p upward } 0 17 {A23R:U -> A22R:C: adjacent_3p downward } 0 18 {A23R:U -> A24R:U: adjacent_5p upward } 0 19 {A24R:U -> A23R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:G 0 2 A10R:G 0 3 A11R:U 0 4 A20R:A 0 5 A21R:C 0 6 A22R:C 0 7 A23R:U 0 [Edges] 0 {A8R:U -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:U: adjacent_3p downward } 0 2 {A8R:U -> A23R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {A23R:U -> A8R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {A9R:G -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:G -> A11R:U: adjacent_5p upward } 0 9 {A11R:U -> A10R:G: adjacent_3p downward } 0 10 {A10R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A21R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A11R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A20R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A20R:A -> A21R:C: adjacent_5p upward } 0 15 {A21R:C -> A20R:A: adjacent_3p downward } 0 16 {A21R:C -> A22R:C: adjacent_5p upward } 0 17 {A22R:C -> A21R:C: adjacent_3p downward } 0 18 {A22R:C -> A23R:U: adjacent_5p upward } 0 19 {A23R:U -> A22R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:G 0 2 A11R:U 0 3 A12R:A 0 4 A19R:U 0 5 A20R:A 0 6 A21R:C 0 7 A22R:C 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:G -> A11R:U: adjacent_5p upward } 0 5 {A11R:U -> A10R:G: adjacent_3p downward } 0 6 {A10R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:U -> A12R:A: adjacent_5p upward } 0 9 {A12R:A -> A11R:U: adjacent_3p downward } 0 10 {A11R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A20R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A12R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A19R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A19R:U -> A20R:A: adjacent_5p upward } 0 15 {A20R:A -> A19R:U: adjacent_3p downward } 0 16 {A20R:A -> A21R:C: adjacent_5p upward } 0 17 {A21R:C -> A20R:A: adjacent_3p downward } 0 18 {A21R:C -> A22R:C: adjacent_5p upward } 0 19 {A22R:C -> A21R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:U 0 2 A12R:A 0 3 A13R:U 0 4 A18R:G 0 5 A19R:U 0 6 A20R:A 0 7 A21R:C 0 [Edges] 0 {A10R:G -> A11R:U: adjacent_5p upward } 0 1 {A11R:U -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:U -> A12R:A: adjacent_5p upward } 0 5 {A12R:A -> A11R:U: adjacent_3p downward } 0 6 {A11R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A20R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A12R:A -> A13R:U: adjacent_5p upward } 0 9 {A13R:U -> A12R:A: adjacent_3p downward } 0 10 {A12R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A19R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A13R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A18R:G -> A13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A18R:G -> A19R:U: adjacent_5p upward } 0 15 {A19R:U -> A18R:G: adjacent_3p downward } 0 16 {A19R:U -> A20R:A: adjacent_5p upward } 0 17 {A20R:A -> A19R:U: adjacent_3p downward } 0 18 {A20R:A -> A21R:C: adjacent_5p upward } 0 19 {A21R:C -> A20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:A 0 2 A13R:U 0 3 A14R:C 0 4 A17R:G 0 5 A18R:G 0 6 A19R:U 0 7 A20R:A 0 [Edges] 0 {A11R:U -> A12R:A: adjacent_5p upward } 0 1 {A12R:A -> A11R:U: adjacent_3p downward } 0 2 {A11R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A20R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A12R:A -> A13R:U: adjacent_5p upward } 0 5 {A13R:U -> A12R:A: adjacent_3p downward } 0 6 {A12R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A19R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A13R:U -> A14R:C: adjacent_5p upward } 0 9 {A14R:C -> A13R:U: adjacent_3p downward } 0 10 {A13R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A18R:G -> A13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A14R:C -> A17R:G: pairing parallel trans 129 Bs/Ww } 0 13 {A17R:G -> A14R:C: pairing parallel trans 129 Ww/Bs } 0 14 {A17R:G -> A18R:G: adjacent_5p } 0 15 {A18R:G -> A17R:G: adjacent_3p } 0 16 {A18R:G -> A19R:U: adjacent_5p upward } 0 17 {A19R:U -> A18R:G: adjacent_3p downward } 0 18 {A19R:U -> A20R:A: adjacent_5p upward } 0 19 {A20R:A -> A19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B2R:G 0 1 B3R:A 0 2 B4R:U 0 3 B5R:G 0 4 B17R:C 0 5 B18R:A 0 6 B19R:U 0 7 B20R:C 0 [Edges] 0 {B2R:G -> B3R:A: adjacent_5p } 0 1 {B3R:A -> B2R:G: adjacent_3p } 0 2 {B2R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B20R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B3R:A -> B4R:U: adjacent_5p } 0 5 {B4R:U -> B3R:A: adjacent_3p } 0 6 {B3R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B19R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B4R:U -> B5R:G: adjacent_5p } 0 9 {B5R:G -> B4R:U: adjacent_3p } 0 10 {B4R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B18R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B5R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B17R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B17R:C -> B18R:A: adjacent_5p } 0 15 {B18R:A -> B17R:C: adjacent_3p } 0 16 {B18R:A -> B19R:U: adjacent_5p } 0 17 {B19R:U -> B18R:A: adjacent_3p } 0 18 {B19R:U -> B20R:C: adjacent_5p } 0 19 {B20R:C -> B19R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B3R:A 0 1 B4R:U 0 2 B5R:G 0 3 B6R:C 0 4 B16R:G 0 5 B17R:C 0 6 B18R:A 0 7 B19R:U 0 [Edges] 0 {B3R:A -> B4R:U: adjacent_5p } 0 1 {B4R:U -> B3R:A: adjacent_3p } 0 2 {B3R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B19R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B4R:U -> B5R:G: adjacent_5p } 0 5 {B5R:G -> B4R:U: adjacent_3p } 0 6 {B4R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B18R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B5R:G -> B6R:C: adjacent_5p upward } 0 9 {B6R:C -> B5R:G: adjacent_3p downward } 0 10 {B5R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B17R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B6R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B16R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B16R:G -> B17R:C: adjacent_5p } 0 15 {B17R:C -> B16R:G: adjacent_3p } 0 16 {B17R:C -> B18R:A: adjacent_5p } 0 17 {B18R:A -> B17R:C: adjacent_3p } 0 18 {B18R:A -> B19R:U: adjacent_5p } 0 19 {B19R:U -> B18R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:U 0 1 A3R:A 0 2 A4R:U 0 3 A5R:A 0 4 B10R:U 0 5 B11R:A 0 6 B12R:U 0 7 B13R:A 0 [Edges] 0 {A2R:U -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:U: adjacent_3p downward } 0 2 {A2R:U -> B13R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B13R:A -> A2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:A -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B12R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A3R:A -> B13R:A: outward } 0 9 {B13R:A -> A3R:A: outward } 0 10 {A4R:U -> A5R:A: adjacent_5p upward } 0 11 {A5R:A -> A4R:U: adjacent_3p downward } 0 12 {A4R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B11R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A5R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B10R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A5R:A -> B11R:A: outward } 0 17 {B11R:A -> A5R:A: outward } 0 18 {B10R:U -> B11R:A: adjacent_5p upward } 0 19 {B11R:A -> B10R:U: adjacent_3p downward } 0 20 {B11R:A -> B12R:U: adjacent_5p upward } 0 21 {B12R:U -> B11R:A: adjacent_3p downward } 0 22 {B12R:U -> B13R:A: adjacent_5p upward } 0 23 {B13R:A -> B12R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:U 0 2 A5R:A 0 3 A6R:U 0 4 B9R:A 0 5 B10R:U 0 6 B11R:A 0 7 B12R:U 0 [Edges] 0 {A3R:A -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B12R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:U -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:U: adjacent_3p downward } 0 6 {A4R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B11R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:A -> A6R:U: adjacent_5p upward } 0 9 {A6R:U -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B10R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:A -> B11R:A: outward } 0 13 {B11R:A -> A5R:A: outward } 0 14 {A6R:U -> B9R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B9R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B9R:A -> B10R:U: adjacent_5p upward } 0 17 {B10R:U -> B9R:A: adjacent_3p downward } 0 18 {B10R:U -> B11R:A: adjacent_5p upward } 0 19 {B11R:A -> B10R:U: adjacent_3p downward } 0 20 {B11R:A -> B12R:U: adjacent_5p upward } 0 21 {B12R:U -> B11R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:A 0 2 A6R:U 0 3 A7R:A 0 4 B8R:U 0 5 B9R:A 0 6 B10R:U 0 7 B11R:A 0 [Edges] 0 {A4R:U -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:U: adjacent_3p downward } 0 2 {A4R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B11R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:A -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B10R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:A -> B11R:A: outward } 0 9 {B11R:A -> A5R:A: outward } 0 10 {A6R:U -> A7R:A: adjacent_5p upward } 0 11 {A7R:A -> A6R:U: adjacent_3p downward } 0 12 {A6R:U -> B9R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B9R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A7R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B8R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A7R:A -> B9R:A: outward } 0 17 {B9R:A -> A7R:A: outward } 0 18 {B8R:U -> B9R:A: adjacent_5p upward } 0 19 {B9R:A -> B8R:U: adjacent_3p downward } 0 20 {B9R:A -> B10R:U: adjacent_5p upward } 0 21 {B10R:U -> B9R:A: adjacent_3p downward } 0 22 {B10R:U -> B11R:A: adjacent_5p upward } 0 23 {B11R:A -> B10R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:U 0 2 A7R:A 0 3 A8R:U 0 4 B7R:A 0 5 B8R:U 0 6 B9R:A 0 7 B10R:U 0 [Edges] 0 {A5R:A -> A6R:U: adjacent_5p upward } 0 1 {A6R:U -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B10R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:U -> A7R:A: adjacent_5p upward } 0 5 {A7R:A -> A6R:U: adjacent_3p downward } 0 6 {A6R:U -> B9R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B9R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:A -> A8R:U: adjacent_5p upward } 0 9 {A8R:U -> A7R:A: adjacent_3p downward } 0 10 {A7R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B8R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:A -> B9R:A: outward } 0 13 {B9R:A -> A7R:A: outward } 0 14 {A8R:U -> B7R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B7R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B7R:A -> B8R:U: adjacent_5p upward } 0 17 {B8R:U -> B7R:A: adjacent_3p downward } 0 18 {B8R:U -> B9R:A: adjacent_5p upward } 0 19 {B9R:A -> B8R:U: adjacent_3p downward } 0 20 {B9R:A -> B10R:U: adjacent_5p upward } 0 21 {B10R:U -> B9R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A6R:U 0 1 A7R:A 0 2 A8R:U 0 3 A9R:A 0 4 B6R:U 0 5 B7R:A 0 6 B8R:U 0 7 B9R:A 0 [Edges] 0 {A6R:U -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:U: adjacent_3p downward } 0 2 {A6R:U -> B9R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B9R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:A -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:A: adjacent_3p downward } 0 6 {A7R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B8R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:A -> B9R:A: outward } 0 9 {B9R:A -> A7R:A: outward } 0 10 {A8R:U -> A9R:A: adjacent_5p upward } 0 11 {A9R:A -> A8R:U: adjacent_3p downward } 0 12 {A8R:U -> B7R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B7R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A9R:A -> B6R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B6R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A9R:A -> B7R:A: outward } 0 17 {B7R:A -> A9R:A: outward } 0 18 {B6R:U -> B7R:A: adjacent_5p upward } 0 19 {B7R:A -> B6R:U: adjacent_3p downward } 0 20 {B7R:A -> B8R:U: adjacent_5p upward } 0 21 {B8R:U -> B7R:A: adjacent_3p downward } 0 22 {B8R:U -> B9R:A: adjacent_5p upward } 0 23 {B9R:A -> B8R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A7R:A 0 1 A8R:U 0 2 A9R:A 0 3 A10R:U 0 4 B5R:A 0 5 B6R:U 0 6 B7R:A 0 7 B8R:U 0 [Edges] 0 {A7R:A -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:A: adjacent_3p downward } 0 2 {A7R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B8R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A8R:U -> A9R:A: adjacent_5p upward } 0 5 {A9R:A -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> B7R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B7R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:A -> A10R:U: adjacent_5p upward } 0 9 {A10R:U -> A9R:A: adjacent_3p downward } 0 10 {A9R:A -> B6R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B6R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:A -> B7R:A: outward } 0 13 {B7R:A -> A9R:A: outward } 0 14 {A10R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B5R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B5R:A -> B6R:U: adjacent_5p upward } 0 17 {B6R:U -> B5R:A: adjacent_3p downward } 0 18 {B6R:U -> B7R:A: adjacent_5p upward } 0 19 {B7R:A -> B6R:U: adjacent_3p downward } 0 20 {B7R:A -> B8R:U: adjacent_5p upward } 0 21 {B8R:U -> B7R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:A 0 2 A10R:U 0 3 A11R:A 0 4 B4R:U 0 5 B5R:A 0 6 B6R:U 0 7 B7R:A 0 [Edges] 0 {A8R:U -> A9R:A: adjacent_5p upward } 0 1 {A9R:A -> A8R:U: adjacent_3p downward } 0 2 {A8R:U -> B7R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B7R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:A -> A10R:U: adjacent_5p upward } 0 5 {A10R:U -> A9R:A: adjacent_3p downward } 0 6 {A9R:A -> B6R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B6R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:A -> B7R:A: outward } 0 9 {B7R:A -> A9R:A: outward } 0 10 {A10R:U -> A11R:A: adjacent_5p upward } 0 11 {A11R:A -> A10R:U: adjacent_3p downward } 0 12 {A10R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B5R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A11R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B4R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A11R:A -> B5R:A: outward } 0 17 {B5R:A -> A11R:A: outward } 0 18 {B4R:U -> B5R:A: adjacent_5p upward } 0 19 {B5R:A -> B4R:U: adjacent_3p downward } 0 20 {B5R:A -> B6R:U: adjacent_5p upward } 0 21 {B6R:U -> B5R:A: adjacent_3p downward } 0 22 {B6R:U -> B7R:A: adjacent_5p upward } 0 23 {B7R:A -> B6R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A9R:A 0 1 A10R:U 0 2 A11R:A 0 3 A12R:U 0 4 B3R:A 0 5 B4R:U 0 6 B5R:A 0 7 B6R:U 0 [Edges] 0 {A9R:A -> A10R:U: adjacent_5p upward } 0 1 {A10R:U -> A9R:A: adjacent_3p downward } 0 2 {A9R:A -> B6R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B6R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A10R:U -> A11R:A: adjacent_5p upward } 0 5 {A11R:A -> A10R:U: adjacent_3p downward } 0 6 {A10R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B5R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:A -> A12R:U: adjacent_5p upward } 0 9 {A12R:U -> A11R:A: adjacent_3p downward } 0 10 {A11R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B4R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A11R:A -> B5R:A: outward } 0 13 {B5R:A -> A11R:A: outward } 0 14 {A12R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B3R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B3R:A -> B4R:U: adjacent_5p upward } 0 17 {B4R:U -> B3R:A: adjacent_3p downward } 0 18 {B4R:U -> B5R:A: adjacent_5p upward } 0 19 {B5R:A -> B4R:U: adjacent_3p downward } 0 20 {B5R:A -> B6R:U: adjacent_5p upward } 0 21 {B6R:U -> B5R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:U 0 1 A11R:A 0 2 A12R:U 0 3 A13R:A 0 4 B2R:U 0 5 B3R:A 0 6 B4R:U 0 7 B5R:A 0 [Edges] 0 {A10R:U -> A11R:A: adjacent_5p upward } 0 1 {A11R:A -> A10R:U: adjacent_3p downward } 0 2 {A10R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B5R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A11R:A -> A12R:U: adjacent_5p upward } 0 5 {A12R:U -> A11R:A: adjacent_3p downward } 0 6 {A11R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B4R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:A -> B5R:A: outward } 0 9 {B5R:A -> A11R:A: outward } 0 10 {A12R:U -> A13R:A: adjacent_5p upward } 0 11 {A13R:A -> A12R:U: adjacent_3p downward } 0 12 {A12R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B3R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A13R:A -> B2R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B2R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A13R:A -> B3R:A: outward } 0 17 {B3R:A -> A13R:A: outward } 0 18 {B2R:U -> B3R:A: adjacent_5p upward } 0 19 {B3R:A -> B2R:U: adjacent_3p downward } 0 20 {B3R:A -> B4R:U: adjacent_5p upward } 0 21 {B4R:U -> B3R:A: adjacent_3p downward } 0 22 {B4R:U -> B5R:A: adjacent_5p upward } 0 23 {B5R:A -> B4R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:C 0 2 4R:G 0 3 5R:C 0 4 8R:G 0 5 9R:C 0 6 10R:G 0 7 11R:U 0 [Edges] 0 {2R:G -> 3R:C: adjacent_5p upward } 0 1 {3R:C -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 11R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {11R:U -> 2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {3R:C -> 4R:G: adjacent_5p upward } 0 5 {4R:G -> 3R:C: adjacent_3p downward } 0 6 {3R:C -> 10R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {10R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:G -> 5R:C: adjacent_5p upward } 0 9 {5R:C -> 4R:G: adjacent_3p downward } 0 10 {4R:G -> 9R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {9R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {5R:C -> 8R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {8R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {8R:G -> 9R:C: adjacent_5p } 0 15 {9R:C -> 8R:G: adjacent_3p } 0 16 {9R:C -> 10R:G: adjacent_5p upward } 0 17 {10R:G -> 9R:C: adjacent_3p downward } 0 18 {10R:G -> 11R:U: adjacent_5p upward } 0 19 {11R:U -> 10R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:C 0 2 4R:G 0 3 5R:C 0 4 15R:G 0 5 16R:C 0 6 17R:G 0 7 18R:C 0 [Edges] 0 {2R:G -> 3R:C: adjacent_5p upward } 0 1 {3R:C -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {18R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:C -> 4R:G: adjacent_5p upward } 0 5 {4R:G -> 3R:C: adjacent_3p downward } 0 6 {3R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {17R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:G -> 5R:C: adjacent_5p upward } 0 9 {5R:C -> 4R:G: adjacent_3p downward } 0 10 {4R:G -> 16R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {16R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {4R:G -> 17R:G: outward } 0 13 {17R:G -> 4R:G: outward } 0 14 {5R:C -> 15R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {15R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {15R:G -> 16R:C: adjacent_5p upward } 0 17 {16R:C -> 15R:G: adjacent_3p downward } 0 18 {16R:C -> 17R:G: adjacent_5p } 0 19 {17R:G -> 16R:C: adjacent_3p } 0 20 {17R:G -> 18R:C: adjacent_5p upward } 0 21 {18R:C -> 17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 8R:U 0 1 9R:G 0 2 10R:G 0 3 11R:G 0 4 30R:C 0 5 31R:C 0 6 32R:C 0 7 33R:A 0 [Edges] 0 {8R:U -> 9R:G: adjacent_5p } 0 1 {9R:G -> 8R:U: adjacent_3p } 0 2 {8R:U -> 33R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {33R:A -> 8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {9R:G -> 10R:G: adjacent_5p upward } 0 5 {10R:G -> 9R:G: adjacent_3p downward } 0 6 {9R:G -> 32R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {32R:C -> 9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {9R:G -> 33R:A: outward } 0 9 {33R:A -> 9R:G: outward } 0 10 {10R:G -> 11R:G: adjacent_5p upward } 0 11 {11R:G -> 10R:G: adjacent_3p downward } 0 12 {10R:G -> 31R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {31R:C -> 10R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {11R:G -> 30R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {30R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {30R:C -> 31R:C: adjacent_5p upward } 0 17 {31R:C -> 30R:C: adjacent_3p downward } 0 18 {31R:C -> 32R:C: adjacent_5p upward } 0 19 {32R:C -> 31R:C: adjacent_3p downward } 0 20 {32R:C -> 33R:A: adjacent_5p upward } 0 21 {33R:A -> 32R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 9R:G 0 1 10R:G 0 2 11R:G 0 3 12R:C 0 4 29R:G 0 5 30R:C 0 6 31R:C 0 7 32R:C 0 [Edges] 0 {9R:G -> 10R:G: adjacent_5p upward } 0 1 {10R:G -> 9R:G: adjacent_3p downward } 0 2 {9R:G -> 32R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {32R:C -> 9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {10R:G -> 11R:G: adjacent_5p upward } 0 5 {11R:G -> 10R:G: adjacent_3p downward } 0 6 {10R:G -> 31R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {31R:C -> 10R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {11R:G -> 12R:C: adjacent_5p } 0 9 {12R:C -> 11R:G: adjacent_3p } 0 10 {11R:G -> 30R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {30R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {12R:C -> 29R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {29R:G -> 12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {29R:G -> 30R:C: adjacent_5p upward } 0 15 {30R:C -> 29R:G: adjacent_3p downward } 0 16 {30R:C -> 31R:C: adjacent_5p upward } 0 17 {31R:C -> 30R:C: adjacent_3p downward } 0 18 {31R:C -> 32R:C: adjacent_5p upward } 0 19 {32R:C -> 31R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 10R:G 0 1 11R:G 0 2 12R:C 0 3 13R:U 0 4 28R:G 0 5 29R:G 0 6 30R:C 0 7 31R:C 0 [Edges] 0 {10R:G -> 11R:G: adjacent_5p upward } 0 1 {11R:G -> 10R:G: adjacent_3p downward } 0 2 {10R:G -> 31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {31R:C -> 10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {11R:G -> 12R:C: adjacent_5p } 0 5 {12R:C -> 11R:G: adjacent_3p } 0 6 {11R:G -> 30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {30R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {12R:C -> 13R:U: adjacent_5p upward } 0 9 {13R:U -> 12R:C: adjacent_3p downward } 0 10 {12R:C -> 29R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {29R:G -> 12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {13R:U -> 28R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {28R:G -> 13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {28R:G -> 29R:G: adjacent_5p } 0 15 {29R:G -> 28R:G: adjacent_3p } 0 16 {29R:G -> 30R:C: adjacent_5p upward } 0 17 {30R:C -> 29R:G: adjacent_3p downward } 0 18 {30R:C -> 31R:C: adjacent_5p upward } 0 19 {31R:C -> 30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:A 0 3 A5R:U 0 4 A10R:G 0 5 A11R:U 0 6 A12R:A 0 7 A13R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A13R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:A: adjacent_5p } 0 5 {A4R:A -> A3R:U: adjacent_3p } 0 6 {A3R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A12R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A11R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A4R:A -> A12R:A: outward } 0 13 {A12R:A -> A4R:A: outward } 0 14 {A5R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A10R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A10R:G -> A11R:U: adjacent_5p upward } 0 17 {A11R:U -> A10R:G: adjacent_3p downward } 0 18 {A11R:U -> A12R:A: adjacent_5p } 0 19 {A12R:A -> A11R:U: adjacent_3p } 0 20 {A12R:A -> A13R:C: adjacent_5p upward } 0 21 {A13R:C -> A12R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C1R:C 0 1 C2R:G 0 2 C3R:U 0 3 C4R:A 0 4 D16R:U 0 5 D17R:A 0 6 D18R:C 0 7 D19R:G 0 [Edges] 0 {C1R:C -> C2R:G: adjacent_5p } 0 1 {C2R:G -> C1R:C: adjacent_3p } 0 2 {C1R:C -> D19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D19R:G -> C1R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C2R:G -> C3R:U: adjacent_5p upward } 0 5 {C3R:U -> C2R:G: adjacent_3p downward } 0 6 {C2R:G -> D18R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D18R:C -> C2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C2R:G -> D19R:G: outward } 0 9 {D19R:G -> C2R:G: outward } 0 10 {C3R:U -> C4R:A: adjacent_5p upward } 0 11 {C4R:A -> C3R:U: adjacent_3p downward } 0 12 {C3R:U -> D17R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {D17R:A -> C3R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {C4R:A -> D16R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {D16R:U -> C4R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {C4R:A -> D17R:A: outward } 0 17 {D17R:A -> C4R:A: outward } 0 18 {D16R:U -> D17R:A: adjacent_5p upward } 0 19 {D17R:A -> D16R:U: adjacent_3p downward } 0 20 {D17R:A -> D18R:C: adjacent_5p upward } 0 21 {D18R:C -> D17R:A: adjacent_3p downward } 0 22 {D18R:C -> D19R:G: adjacent_5p } 0 23 {D19R:G -> D18R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 C2R:G 0 1 C3R:U 0 2 C4R:A 0 3 C5R:C 0 4 D15R:G 0 5 D16R:U 0 6 D17R:A 0 7 D18R:C 0 [Edges] 0 {C2R:G -> C3R:U: adjacent_5p upward } 0 1 {C3R:U -> C2R:G: adjacent_3p downward } 0 2 {C2R:G -> D18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D18R:C -> C2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C3R:U -> C4R:A: adjacent_5p upward } 0 5 {C4R:A -> C3R:U: adjacent_3p downward } 0 6 {C3R:U -> D17R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D17R:A -> C3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C4R:A -> C5R:C: adjacent_5p upward } 0 9 {C5R:C -> C4R:A: adjacent_3p downward } 0 10 {C4R:A -> D16R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D16R:U -> C4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C4R:A -> D17R:A: outward } 0 13 {D17R:A -> C4R:A: outward } 0 14 {C5R:C -> D15R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D15R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D15R:G -> D16R:U: adjacent_5p upward } 0 17 {D16R:U -> D15R:G: adjacent_3p downward } 0 18 {D16R:U -> D17R:A: adjacent_5p upward } 0 19 {D17R:A -> D16R:U: adjacent_3p downward } 0 20 {D17R:A -> D18R:C: adjacent_5p upward } 0 21 {D18R:C -> D17R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C3R:U 0 1 C4R:A 0 2 C5R:C 0 3 C6R:G 0 4 D14R:C 0 5 D15R:G 0 6 D16R:U 0 7 D17R:A 0 [Edges] 0 {C3R:U -> C4R:A: adjacent_5p upward } 0 1 {C4R:A -> C3R:U: adjacent_3p downward } 0 2 {C3R:U -> D17R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D17R:A -> C3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C4R:A -> C5R:C: adjacent_5p upward } 0 5 {C5R:C -> C4R:A: adjacent_3p downward } 0 6 {C4R:A -> D16R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D16R:U -> C4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C4R:A -> D17R:A: outward } 0 9 {D17R:A -> C4R:A: outward } 0 10 {C5R:C -> C6R:G: adjacent_5p upward } 0 11 {C6R:G -> C5R:C: adjacent_3p downward } 0 12 {C5R:C -> D15R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D15R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C6R:G -> D14R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D14R:C -> C6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C6R:G -> D15R:G: outward } 0 17 {D15R:G -> C6R:G: outward } 0 18 {D14R:C -> D15R:G: adjacent_5p upward } 0 19 {D15R:G -> D14R:C: adjacent_3p downward } 0 20 {D15R:G -> D16R:U: adjacent_5p upward } 0 21 {D16R:U -> D15R:G: adjacent_3p downward } 0 22 {D16R:U -> D17R:A: adjacent_5p upward } 0 23 {D17R:A -> D16R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 C4R:A 0 1 C5R:C 0 2 C6R:G 0 3 C7R:C 0 4 D13R:G 0 5 D14R:C 0 6 D15R:G 0 7 D16R:U 0 [Edges] 0 {C4R:A -> C5R:C: adjacent_5p upward } 0 1 {C5R:C -> C4R:A: adjacent_3p downward } 0 2 {C4R:A -> D16R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D16R:U -> C4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C5R:C -> C6R:G: adjacent_5p upward } 0 5 {C6R:G -> C5R:C: adjacent_3p downward } 0 6 {C5R:C -> D15R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D15R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C6R:G -> C7R:C: adjacent_5p upward } 0 9 {C7R:C -> C6R:G: adjacent_3p downward } 0 10 {C6R:G -> D14R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D14R:C -> C6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C6R:G -> D15R:G: outward } 0 13 {D15R:G -> C6R:G: outward } 0 14 {C7R:C -> D13R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D13R:G -> C7R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D13R:G -> D14R:C: adjacent_5p upward } 0 17 {D14R:C -> D13R:G: adjacent_3p downward } 0 18 {D14R:C -> D15R:G: adjacent_5p upward } 0 19 {D15R:G -> D14R:C: adjacent_3p downward } 0 20 {D15R:G -> D16R:U: adjacent_5p upward } 0 21 {D16R:U -> D15R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C5R:C 0 1 C6R:G 0 2 C7R:C 0 3 C8R:G 0 4 D12R:C 0 5 D13R:G 0 6 D14R:C 0 7 D15R:G 0 [Edges] 0 {C5R:C -> C6R:G: adjacent_5p upward } 0 1 {C6R:G -> C5R:C: adjacent_3p downward } 0 2 {C5R:C -> D15R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D15R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C6R:G -> C7R:C: adjacent_5p upward } 0 5 {C7R:C -> C6R:G: adjacent_3p downward } 0 6 {C6R:G -> D14R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D14R:C -> C6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C6R:G -> D15R:G: outward } 0 9 {D15R:G -> C6R:G: outward } 0 10 {C7R:C -> C8R:G: adjacent_5p upward } 0 11 {C8R:G -> C7R:C: adjacent_3p downward } 0 12 {C7R:C -> D13R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D13R:G -> C7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C8R:G -> D12R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D12R:C -> C8R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C8R:G -> D13R:G: outward } 0 17 {D13R:G -> C8R:G: outward } 0 18 {D12R:C -> D13R:G: adjacent_5p } 0 19 {D13R:G -> D12R:C: adjacent_3p } 0 20 {D13R:G -> D14R:C: adjacent_5p upward } 0 21 {D14R:C -> D13R:G: adjacent_3p downward } 0 22 {D14R:C -> D15R:G: adjacent_5p upward } 0 23 {D15R:G -> D14R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 C6R:G 0 1 C7R:C 0 2 C8R:G 0 3 C9R:U 0 4 D11R:A 0 5 D12R:C 0 6 D13R:G 0 7 D14R:C 0 [Edges] 0 {C6R:G -> C7R:C: adjacent_5p upward } 0 1 {C7R:C -> C6R:G: adjacent_3p downward } 0 2 {C6R:G -> D14R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D14R:C -> C6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C7R:C -> C8R:G: adjacent_5p upward } 0 5 {C8R:G -> C7R:C: adjacent_3p downward } 0 6 {C7R:C -> D13R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D13R:G -> C7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C8R:G -> C9R:U: adjacent_5p upward } 0 9 {C9R:U -> C8R:G: adjacent_3p downward } 0 10 {C8R:G -> D12R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D12R:C -> C8R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C8R:G -> D13R:G: outward } 0 13 {D13R:G -> C8R:G: outward } 0 14 {C9R:U -> D11R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {D11R:A -> C9R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {D11R:A -> D12R:C: adjacent_5p upward } 0 17 {D12R:C -> D11R:A: adjacent_3p downward } 0 18 {D12R:C -> D13R:G: adjacent_5p } 0 19 {D13R:G -> D12R:C: adjacent_3p } 0 20 {D13R:G -> D14R:C: adjacent_5p upward } 0 21 {D14R:C -> D13R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C8R:G 0 1 C9R:U 0 2 C10R:C 0 3 C11R:A 0 4 D9R:U 0 5 D10R:C 0 6 D11R:A 0 7 D12R:C 0 [Edges] 0 {C8R:G -> C9R:U: adjacent_5p upward } 0 1 {C9R:U -> C8R:G: adjacent_3p downward } 0 2 {C8R:G -> D12R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D12R:C -> C8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C9R:U -> C10R:C: adjacent_5p upward } 0 5 {C10R:C -> C9R:U: adjacent_3p downward } 0 6 {C9R:U -> D11R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D11R:A -> C9R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C10R:C -> C11R:A: adjacent_5p } 0 9 {C11R:A -> C10R:C: adjacent_3p } 0 10 {C11R:A -> D9R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D9R:U -> C11R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {D9R:U -> D10R:C: adjacent_5p } 0 13 {D10R:C -> D9R:U: adjacent_3p } 0 14 {D10R:C -> D11R:A: adjacent_5p upward } 0 15 {D11R:A -> D10R:C: adjacent_3p downward } 0 16 {D11R:A -> D12R:C: adjacent_5p upward } 0 17 {D12R:C -> D11R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 C9R:U 0 1 C10R:C 0 2 C11R:A 0 3 C12R:C 0 4 D8R:G 0 5 D9R:U 0 6 D10R:C 0 7 D11R:A 0 [Edges] 0 {C9R:U -> C10R:C: adjacent_5p upward } 0 1 {C10R:C -> C9R:U: adjacent_3p downward } 0 2 {C9R:U -> D11R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D11R:A -> C9R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C10R:C -> C11R:A: adjacent_5p } 0 5 {C11R:A -> C10R:C: adjacent_3p } 0 6 {C11R:A -> C12R:C: adjacent_5p upward } 0 7 {C12R:C -> C11R:A: adjacent_3p downward } 0 8 {C11R:A -> D9R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {D9R:U -> C11R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {C12R:C -> D8R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D8R:G -> C12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D8R:G -> D9R:U: adjacent_5p upward } 0 13 {D9R:U -> D8R:G: adjacent_3p downward } 0 14 {D9R:U -> D10R:C: adjacent_5p } 0 15 {D10R:C -> D9R:U: adjacent_3p } 0 16 {D10R:C -> D11R:A: adjacent_5p upward } 0 17 {D11R:A -> D10R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 C11R:A 0 1 C12R:C 0 2 C13R:G 0 3 C14R:C 0 4 D6R:G 0 5 D7R:C 0 6 D8R:G 0 7 D9R:U 0 [Edges] 0 {C11R:A -> C12R:C: adjacent_5p upward } 0 1 {C12R:C -> C11R:A: adjacent_3p downward } 0 2 {C11R:A -> D9R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D9R:U -> C11R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C12R:C -> C13R:G: adjacent_5p upward } 0 5 {C13R:G -> C12R:C: adjacent_3p downward } 0 6 {C12R:C -> D8R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D8R:G -> C12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C13R:G -> C14R:C: adjacent_5p upward } 0 9 {C14R:C -> C13R:G: adjacent_3p downward } 0 10 {C13R:G -> D7R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D7R:C -> C13R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C13R:G -> D8R:G: outward } 0 13 {D8R:G -> C13R:G: outward } 0 14 {C14R:C -> D6R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D6R:G -> C14R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D6R:G -> D7R:C: adjacent_5p upward } 0 17 {D7R:C -> D6R:G: adjacent_3p downward } 0 18 {D7R:C -> D8R:G: adjacent_5p } 0 19 {D8R:G -> D7R:C: adjacent_3p } 0 20 {D8R:G -> D9R:U: adjacent_5p upward } 0 21 {D9R:U -> D8R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C12R:C 0 1 C13R:G 0 2 C14R:C 0 3 C15R:G 0 4 D5R:C 0 5 D6R:G 0 6 D7R:C 0 7 D8R:G 0 [Edges] 0 {C12R:C -> C13R:G: adjacent_5p upward } 0 1 {C13R:G -> C12R:C: adjacent_3p downward } 0 2 {C12R:C -> D8R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D8R:G -> C12R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C13R:G -> C14R:C: adjacent_5p upward } 0 5 {C14R:C -> C13R:G: adjacent_3p downward } 0 6 {C13R:G -> D7R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D7R:C -> C13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C13R:G -> D8R:G: outward } 0 9 {D8R:G -> C13R:G: outward } 0 10 {C14R:C -> C15R:G: adjacent_5p } 0 11 {C15R:G -> C14R:C: adjacent_3p } 0 12 {C14R:C -> D6R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D6R:G -> C14R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C15R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D5R:C -> C15R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C15R:G -> D6R:G: outward } 0 17 {D6R:G -> C15R:G: outward } 0 18 {D5R:C -> D6R:G: adjacent_5p upward } 0 19 {D6R:G -> D5R:C: adjacent_3p downward } 0 20 {D6R:G -> D7R:C: adjacent_5p upward } 0 21 {D7R:C -> D6R:G: adjacent_3p downward } 0 22 {D7R:C -> D8R:G: adjacent_5p } 0 23 {D8R:G -> D7R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 C13R:G 0 1 C14R:C 0 2 C15R:G 0 3 C16R:U 0 4 D4R:A 0 5 D5R:C 0 6 D6R:G 0 7 D7R:C 0 [Edges] 0 {C13R:G -> C14R:C: adjacent_5p upward } 0 1 {C14R:C -> C13R:G: adjacent_3p downward } 0 2 {C13R:G -> D7R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D7R:C -> C13R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C14R:C -> C15R:G: adjacent_5p } 0 5 {C15R:G -> C14R:C: adjacent_3p } 0 6 {C14R:C -> D6R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D6R:G -> C14R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C15R:G -> C16R:U: adjacent_5p upward } 0 9 {C16R:U -> C15R:G: adjacent_3p downward } 0 10 {C15R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D5R:C -> C15R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C15R:G -> D6R:G: outward } 0 13 {D6R:G -> C15R:G: outward } 0 14 {C16R:U -> D4R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {D4R:A -> C16R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {D4R:A -> D5R:C: adjacent_5p upward } 0 17 {D5R:C -> D4R:A: adjacent_3p downward } 0 18 {D5R:C -> D6R:G: adjacent_5p upward } 0 19 {D6R:G -> D5R:C: adjacent_3p downward } 0 20 {D6R:G -> D7R:C: adjacent_5p upward } 0 21 {D7R:C -> D6R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C14R:C 0 1 C15R:G 0 2 C16R:U 0 3 C17R:A 0 4 D3R:U 0 5 D4R:A 0 6 D5R:C 0 7 D6R:G 0 [Edges] 0 {C14R:C -> C15R:G: adjacent_5p } 0 1 {C15R:G -> C14R:C: adjacent_3p } 0 2 {C14R:C -> D6R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D6R:G -> C14R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C15R:G -> C16R:U: adjacent_5p upward } 0 5 {C16R:U -> C15R:G: adjacent_3p downward } 0 6 {C15R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D5R:C -> C15R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C15R:G -> D6R:G: outward } 0 9 {D6R:G -> C15R:G: outward } 0 10 {C16R:U -> C17R:A: adjacent_5p } 0 11 {C17R:A -> C16R:U: adjacent_3p } 0 12 {C16R:U -> D4R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {D4R:A -> C16R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {C17R:A -> D3R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {D3R:U -> C17R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {C17R:A -> D4R:A: outward } 0 17 {D4R:A -> C17R:A: outward } 0 18 {D3R:U -> D4R:A: adjacent_5p upward } 0 19 {D4R:A -> D3R:U: adjacent_3p downward } 0 20 {D4R:A -> D5R:C: adjacent_5p upward } 0 21 {D5R:C -> D4R:A: adjacent_3p downward } 0 22 {D5R:C -> D6R:G: adjacent_5p upward } 0 23 {D6R:G -> D5R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 C15R:G 0 1 C16R:U 0 2 C17R:A 0 3 C18R:C 0 4 D2R:G 0 5 D3R:U 0 6 D4R:A 0 7 D5R:C 0 [Edges] 0 {C15R:G -> C16R:U: adjacent_5p upward } 0 1 {C16R:U -> C15R:G: adjacent_3p downward } 0 2 {C15R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D5R:C -> C15R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C16R:U -> C17R:A: adjacent_5p } 0 5 {C17R:A -> C16R:U: adjacent_3p } 0 6 {C16R:U -> D4R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D4R:A -> C16R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C17R:A -> C18R:C: adjacent_5p upward } 0 9 {C18R:C -> C17R:A: adjacent_3p downward } 0 10 {C17R:A -> D3R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D3R:U -> C17R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C17R:A -> D4R:A: outward } 0 13 {D4R:A -> C17R:A: outward } 0 14 {C18R:C -> D2R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D2R:G -> C18R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D2R:G -> D3R:U: adjacent_5p upward } 0 17 {D3R:U -> D2R:G: adjacent_3p downward } 0 18 {D3R:U -> D4R:A: adjacent_5p upward } 0 19 {D4R:A -> D3R:U: adjacent_3p downward } 0 20 {D4R:A -> D5R:C: adjacent_5p upward } 0 21 {D5R:C -> D4R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C16R:U 0 1 C17R:A 0 2 C18R:C 0 3 C19R:G 0 4 D1R:C 0 5 D2R:G 0 6 D3R:U 0 7 D4R:A 0 [Edges] 0 {C16R:U -> C17R:A: adjacent_5p } 0 1 {C17R:A -> C16R:U: adjacent_3p } 0 2 {C16R:U -> D4R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D4R:A -> C16R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C17R:A -> C18R:C: adjacent_5p upward } 0 5 {C18R:C -> C17R:A: adjacent_3p downward } 0 6 {C17R:A -> D3R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D3R:U -> C17R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C17R:A -> D4R:A: outward } 0 9 {D4R:A -> C17R:A: outward } 0 10 {C18R:C -> C19R:G: adjacent_5p upward } 0 11 {C19R:G -> C18R:C: adjacent_3p downward } 0 12 {C18R:C -> D2R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D2R:G -> C18R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C19R:G -> D1R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D1R:C -> C19R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C19R:G -> D2R:G: outward } 0 17 {D2R:G -> C19R:G: outward } 0 18 {D1R:C -> D2R:G: adjacent_5p upward } 0 19 {D2R:G -> D1R:C: adjacent_3p downward } 0 20 {D2R:G -> D3R:U: adjacent_5p upward } 0 21 {D3R:U -> D2R:G: adjacent_3p downward } 0 22 {D3R:U -> D4R:A: adjacent_5p upward } 0 23 {D4R:A -> D3R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:G 0 2 A3R:A 0 3 A4R:C 0 4 A44R:G 0 5 A45R:U 0 6 A46R:C 0 7 A47R:C 0 [Edges] 0 {A1R:G -> A2R:G: adjacent_5p upward } 0 1 {A2R:G -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A47R:C: pairing antiparallel cis 130 Ww/Ww } 0 3 {A47R:C -> A1R:G: pairing antiparallel cis 130 Ww/Ww } 0 4 {A2R:G -> A3R:A: adjacent_5p upward } 0 5 {A3R:A -> A2R:G: adjacent_3p downward } 0 6 {A2R:G -> A46R:C: pairing antiparallel cis Ww/Ww } 0 7 {A46R:C -> A2R:G: pairing antiparallel cis Ww/Ww } 0 8 {A3R:A -> A4R:C: adjacent_5p upward } 0 9 {A4R:C -> A3R:A: adjacent_3p downward } 0 10 {A3R:A -> A45R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A45R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A4R:C -> A44R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A44R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A44R:G -> A45R:U: adjacent_5p upward } 0 15 {A45R:U -> A44R:G: adjacent_3p downward } 0 16 {A45R:U -> A46R:C: adjacent_5p upward } 0 17 {A46R:C -> A45R:U: adjacent_3p downward } 0 18 {A46R:C -> A47R:C: adjacent_5p } 0 19 {A47R:C -> A46R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:C 0 3 A5R:G 0 4 A43R:C 0 5 A44R:G 0 6 A45R:U 0 7 A46R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A46R:C: pairing antiparallel cis Ww/Ww } 0 3 {A46R:C -> A2R:G: pairing antiparallel cis Ww/Ww } 0 4 {A3R:A -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A45R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A45R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:C -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> A44R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A44R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A43R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A43R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A5R:G -> A44R:G: outward } 0 15 {A44R:G -> A5R:G: outward } 0 16 {A43R:C -> A44R:G: adjacent_5p upward } 0 17 {A44R:G -> A43R:C: adjacent_3p downward } 0 18 {A44R:G -> A45R:U: adjacent_5p upward } 0 19 {A45R:U -> A44R:G: adjacent_3p downward } 0 20 {A45R:U -> A46R:C: adjacent_5p upward } 0 21 {A46R:C -> A45R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:C 0 2 A5R:G 0 3 A6R:A 0 4 A42R:U 0 5 A43R:C 0 6 A44R:G 0 7 A45R:U 0 [Edges] 0 {A3R:A -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A45R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A45R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:C -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> A44R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A44R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A6R:A: adjacent_5p upward } 0 9 {A6R:A -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> A43R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A43R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A44R:G: outward } 0 13 {A44R:G -> A5R:G: outward } 0 14 {A6R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A42R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A6R:A -> A43R:C: outward } 0 17 {A43R:C -> A6R:A: outward } 0 18 {A42R:U -> A43R:C: adjacent_5p } 0 19 {A43R:C -> A42R:U: adjacent_3p } 0 20 {A43R:C -> A44R:G: adjacent_5p upward } 0 21 {A44R:G -> A43R:C: adjacent_3p downward } 0 22 {A44R:G -> A45R:U: adjacent_5p upward } 0 23 {A45R:U -> A44R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A17R:G 0 1 A18R:C 0 2 A19R:A 0 3 A20R:U 0 4 A31R:A 0 5 A32R:U 0 6 A33R:G 0 7 A34R:C 0 [Edges] 0 {A17R:G -> A18R:C: adjacent_5p upward } 0 1 {A18R:C -> A17R:G: adjacent_3p downward } 0 2 {A17R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A34R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A18R:C -> A19R:A: adjacent_5p upward } 0 5 {A19R:A -> A18R:C: adjacent_3p downward } 0 6 {A18R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A33R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A19R:A -> A20R:U: adjacent_5p upward } 0 9 {A20R:U -> A19R:A: adjacent_3p downward } 0 10 {A19R:A -> A32R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A32R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A19R:A -> A33R:G: outward } 0 13 {A33R:G -> A19R:A: outward } 0 14 {A20R:U -> A31R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A31R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A31R:A -> A32R:U: adjacent_5p upward } 0 17 {A32R:U -> A31R:A: adjacent_3p downward } 0 18 {A32R:U -> A33R:G: adjacent_5p upward } 0 19 {A33R:G -> A32R:U: adjacent_3p downward } 0 20 {A33R:G -> A34R:C: adjacent_5p upward } 0 21 {A34R:C -> A33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A18R:C 0 1 A19R:A 0 2 A20R:U 0 3 A21R:G 0 4 A30R:C 0 5 A31R:A 0 6 A32R:U 0 7 A33R:G 0 [Edges] 0 {A18R:C -> A19R:A: adjacent_5p upward } 0 1 {A19R:A -> A18R:C: adjacent_3p downward } 0 2 {A18R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A33R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A19R:A -> A20R:U: adjacent_5p upward } 0 5 {A20R:U -> A19R:A: adjacent_3p downward } 0 6 {A19R:A -> A32R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A32R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A19R:A -> A33R:G: outward } 0 9 {A33R:G -> A19R:A: outward } 0 10 {A20R:U -> A21R:G: adjacent_5p upward } 0 11 {A21R:G -> A20R:U: adjacent_3p downward } 0 12 {A20R:U -> A31R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A31R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A21R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A30R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A21R:G -> A31R:A: outward } 0 17 {A31R:A -> A21R:G: outward } 0 18 {A30R:C -> A31R:A: adjacent_5p } 0 19 {A31R:A -> A30R:C: adjacent_3p } 0 20 {A31R:A -> A32R:U: adjacent_5p upward } 0 21 {A32R:U -> A31R:A: adjacent_3p downward } 0 22 {A32R:U -> A33R:G: adjacent_5p upward } 0 23 {A33R:G -> A32R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A19R:A 0 1 A20R:U 0 2 A21R:G 0 3 A22R:A 0 4 A29R:U 0 5 A30R:C 0 6 A31R:A 0 7 A32R:U 0 [Edges] 0 {A19R:A -> A20R:U: adjacent_5p upward } 0 1 {A20R:U -> A19R:A: adjacent_3p downward } 0 2 {A19R:A -> A32R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A32R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A20R:U -> A21R:G: adjacent_5p upward } 0 5 {A21R:G -> A20R:U: adjacent_3p downward } 0 6 {A20R:U -> A31R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A31R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A21R:G -> A22R:A: adjacent_5p upward } 0 9 {A22R:A -> A21R:G: adjacent_3p downward } 0 10 {A21R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A30R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A21R:G -> A31R:A: outward } 0 13 {A31R:A -> A21R:G: outward } 0 14 {A22R:A -> A29R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A29R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A29R:U -> A30R:C: adjacent_5p } 0 17 {A30R:C -> A29R:U: adjacent_3p } 0 18 {A30R:C -> A31R:A: adjacent_5p } 0 19 {A31R:A -> A30R:C: adjacent_3p } 0 20 {A31R:A -> A32R:U: adjacent_5p upward } 0 21 {A32R:U -> A31R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B1R:G 0 1 B2R:G 0 2 B3R:A 0 3 B4R:C 0 4 B44R:G 0 5 B45R:U 0 6 B46R:C 0 7 B47R:C 0 [Edges] 0 {B1R:G -> B2R:G: adjacent_5p upward } 0 1 {B2R:G -> B1R:G: adjacent_3p downward } 0 2 {B1R:G -> B47R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B47R:C -> B1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B2R:G -> B3R:A: adjacent_5p upward } 0 5 {B3R:A -> B2R:G: adjacent_3p downward } 0 6 {B2R:G -> B46R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B46R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B3R:A -> B4R:C: adjacent_5p upward } 0 9 {B4R:C -> B3R:A: adjacent_3p downward } 0 10 {B3R:A -> B45R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B45R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B4R:C -> B44R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B44R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B44R:G -> B45R:U: adjacent_5p upward } 0 15 {B45R:U -> B44R:G: adjacent_3p downward } 0 16 {B45R:U -> B46R:C: adjacent_5p } 0 17 {B46R:C -> B45R:U: adjacent_3p } 0 18 {B46R:C -> B47R:C: adjacent_5p upward } 0 19 {B47R:C -> B46R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B2R:G 0 1 B3R:A 0 2 B4R:C 0 3 B5R:G 0 4 B43R:C 0 5 B44R:G 0 6 B45R:U 0 7 B46R:C 0 [Edges] 0 {B2R:G -> B3R:A: adjacent_5p upward } 0 1 {B3R:A -> B2R:G: adjacent_3p downward } 0 2 {B2R:G -> B46R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B46R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B3R:A -> B4R:C: adjacent_5p upward } 0 5 {B4R:C -> B3R:A: adjacent_3p downward } 0 6 {B3R:A -> B45R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B45R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B4R:C -> B5R:G: adjacent_5p } 0 9 {B5R:G -> B4R:C: adjacent_3p } 0 10 {B4R:C -> B44R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B44R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B5R:G -> B43R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B43R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B5R:G -> B44R:G: outward } 0 15 {B44R:G -> B5R:G: outward } 0 16 {B43R:C -> B44R:G: adjacent_5p } 0 17 {B44R:G -> B43R:C: adjacent_3p } 0 18 {B44R:G -> B45R:U: adjacent_5p upward } 0 19 {B45R:U -> B44R:G: adjacent_3p downward } 0 20 {B45R:U -> B46R:C: adjacent_5p } 0 21 {B46R:C -> B45R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B3R:A 0 1 B4R:C 0 2 B5R:G 0 3 B6R:A 0 4 B42R:U 0 5 B43R:C 0 6 B44R:G 0 7 B45R:U 0 [Edges] 0 {B3R:A -> B4R:C: adjacent_5p upward } 0 1 {B4R:C -> B3R:A: adjacent_3p downward } 0 2 {B3R:A -> B45R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B45R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B4R:C -> B5R:G: adjacent_5p } 0 5 {B5R:G -> B4R:C: adjacent_3p } 0 6 {B4R:C -> B44R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B44R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B5R:G -> B6R:A: adjacent_5p upward } 0 9 {B6R:A -> B5R:G: adjacent_3p downward } 0 10 {B5R:G -> B43R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B43R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B5R:G -> B44R:G: outward } 0 13 {B44R:G -> B5R:G: outward } 0 14 {B6R:A -> B42R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B42R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B42R:U -> B43R:C: adjacent_5p upward } 0 17 {B43R:C -> B42R:U: adjacent_3p downward } 0 18 {B43R:C -> B44R:G: adjacent_5p } 0 19 {B44R:G -> B43R:C: adjacent_3p } 0 20 {B44R:G -> B45R:U: adjacent_5p upward } 0 21 {B45R:U -> B44R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B17R:G 0 1 B18R:C 0 2 B19R:A 0 3 B20R:U 0 4 B31R:A 0 5 B32R:U 0 6 B33R:G 0 7 B34R:C 0 [Edges] 0 {B17R:G -> B18R:C: adjacent_5p upward } 0 1 {B18R:C -> B17R:G: adjacent_3p downward } 0 2 {B17R:G -> B34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B34R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B18R:C -> B19R:A: adjacent_5p upward } 0 5 {B19R:A -> B18R:C: adjacent_3p downward } 0 6 {B18R:C -> B33R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B33R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B19R:A -> B20R:U: adjacent_5p upward } 0 9 {B20R:U -> B19R:A: adjacent_3p downward } 0 10 {B19R:A -> B32R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B32R:U -> B19R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B19R:A -> B33R:G: outward } 0 13 {B33R:G -> B19R:A: outward } 0 14 {B20R:U -> B31R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B31R:A -> B20R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B31R:A -> B32R:U: adjacent_5p upward } 0 17 {B32R:U -> B31R:A: adjacent_3p downward } 0 18 {B32R:U -> B33R:G: adjacent_5p upward } 0 19 {B33R:G -> B32R:U: adjacent_3p downward } 0 20 {B33R:G -> B34R:C: adjacent_5p upward } 0 21 {B34R:C -> B33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B18R:C 0 1 B19R:A 0 2 B20R:U 0 3 B21R:G 0 4 B30R:C 0 5 B31R:A 0 6 B32R:U 0 7 B33R:G 0 [Edges] 0 {B18R:C -> B19R:A: adjacent_5p upward } 0 1 {B19R:A -> B18R:C: adjacent_3p downward } 0 2 {B18R:C -> B33R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B33R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B19R:A -> B20R:U: adjacent_5p upward } 0 5 {B20R:U -> B19R:A: adjacent_3p downward } 0 6 {B19R:A -> B32R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B32R:U -> B19R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B19R:A -> B33R:G: outward } 0 9 {B33R:G -> B19R:A: outward } 0 10 {B20R:U -> B21R:G: adjacent_5p upward } 0 11 {B21R:G -> B20R:U: adjacent_3p downward } 0 12 {B20R:U -> B31R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B31R:A -> B20R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B21R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B30R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B21R:G -> B31R:A: outward } 0 17 {B31R:A -> B21R:G: outward } 0 18 {B30R:C -> B31R:A: adjacent_5p upward } 0 19 {B31R:A -> B30R:C: adjacent_3p downward } 0 20 {B31R:A -> B32R:U: adjacent_5p upward } 0 21 {B32R:U -> B31R:A: adjacent_3p downward } 0 22 {B32R:U -> B33R:G: adjacent_5p upward } 0 23 {B33R:G -> B32R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 B19R:A 0 1 B20R:U 0 2 B21R:G 0 3 B22R:A 0 4 B29R:U 0 5 B30R:C 0 6 B31R:A 0 7 B32R:U 0 [Edges] 0 {B19R:A -> B20R:U: adjacent_5p upward } 0 1 {B20R:U -> B19R:A: adjacent_3p downward } 0 2 {B19R:A -> B32R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B32R:U -> B19R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B20R:U -> B21R:G: adjacent_5p upward } 0 5 {B21R:G -> B20R:U: adjacent_3p downward } 0 6 {B20R:U -> B31R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B31R:A -> B20R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B21R:G -> B22R:A: adjacent_5p upward } 0 9 {B22R:A -> B21R:G: adjacent_3p downward } 0 10 {B21R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B30R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B21R:G -> B31R:A: outward } 0 13 {B31R:A -> B21R:G: outward } 0 14 {B22R:A -> B29R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B29R:U -> B22R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B29R:U -> B30R:C: adjacent_5p upward } 0 17 {B30R:C -> B29R:U: adjacent_3p downward } 0 18 {B30R:C -> B31R:A: adjacent_5p upward } 0 19 {B31R:A -> B30R:C: adjacent_3p downward } 0 20 {B31R:A -> B32R:U: adjacent_5p upward } 0 21 {B32R:U -> B31R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A908R:G 0 1 A909R:G 0 2 A910R:G 0 3 A911R:A 0 4 A925R:U 0 5 A926R:U 0 6 A927R:C 0 7 A928R:C 0 [Edges] 0 {A908R:G -> A909R:G: adjacent_5p upward } 0 1 {A909R:G -> A908R:G: adjacent_3p downward } 0 2 {A908R:G -> A928R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A928R:C -> A908R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A909R:G -> A910R:G: adjacent_5p upward } 0 5 {A910R:G -> A909R:G: adjacent_3p downward } 0 6 {A909R:G -> A927R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A927R:C -> A909R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A910R:G -> A911R:A: adjacent_5p upward } 0 9 {A911R:A -> A910R:G: adjacent_3p downward } 0 10 {A910R:G -> A926R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A926R:U -> A910R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A911R:A -> A925R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A925R:U -> A911R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A925R:U -> A926R:U: adjacent_5p upward } 0 15 {A926R:U -> A925R:U: adjacent_3p downward } 0 16 {A926R:U -> A927R:C: adjacent_5p upward } 0 17 {A927R:C -> A926R:U: adjacent_3p downward } 0 18 {A927R:C -> A928R:C: adjacent_5p upward } 0 19 {A928R:C -> A927R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A909R:G 0 1 A910R:G 0 2 A911R:A 0 3 A912R:G 0 4 A924R:C 0 5 A925R:U 0 6 A926R:U 0 7 A927R:C 0 [Edges] 0 {A909R:G -> A910R:G: adjacent_5p upward } 0 1 {A910R:G -> A909R:G: adjacent_3p downward } 0 2 {A909R:G -> A927R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A927R:C -> A909R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A910R:G -> A911R:A: adjacent_5p upward } 0 5 {A911R:A -> A910R:G: adjacent_3p downward } 0 6 {A910R:G -> A926R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A926R:U -> A910R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A911R:A -> A912R:G: adjacent_5p upward } 0 9 {A912R:G -> A911R:A: adjacent_3p downward } 0 10 {A911R:A -> A925R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A925R:U -> A911R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A912R:G -> A924R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A924R:C -> A912R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A924R:C -> A925R:U: adjacent_5p upward } 0 15 {A925R:U -> A924R:C: adjacent_3p downward } 0 16 {A925R:U -> A926R:U: adjacent_5p upward } 0 17 {A926R:U -> A925R:U: adjacent_3p downward } 0 18 {A926R:U -> A927R:C: adjacent_5p upward } 0 19 {A927R:C -> A926R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A102R:G 0 1 A103R:C 0 2 A104R:G 0 3 A105R:A 0 4 B112R:G 0 5 B113R:A 0 6 B114R:G 0 7 B115R:C 0 [Edges] 0 {A102R:G -> A103R:C: adjacent_5p upward } 0 1 {A103R:C -> A102R:G: adjacent_3p downward } 0 2 {A102R:G -> B115R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 3 {B115R:C -> A102R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 4 {A103R:C -> A104R:G: adjacent_5p upward } 0 5 {A104R:G -> A103R:C: adjacent_3p downward } 0 6 {A103R:C -> B114R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B114R:G -> A103R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A104R:G -> A105R:A: adjacent_5p } 0 9 {A105R:A -> A104R:G: adjacent_3p } 0 10 {A104R:G -> B112R:G: inward } 0 11 {B112R:G -> A104R:G: inward } 0 12 {A104R:G -> B113R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {B113R:A -> A104R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A105R:A -> B112R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {B112R:G -> A105R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {A105R:A -> B113R:A: outward } 0 17 {B113R:A -> A105R:A: outward } 0 18 {B112R:G -> B113R:A: adjacent_5p } 0 19 {B113R:A -> B112R:G: adjacent_3p } 0 20 {B113R:A -> B114R:G: adjacent_5p upward } 0 21 {B114R:G -> B113R:A: adjacent_3p downward } 0 22 {B114R:G -> B115R:C: adjacent_5p upward } 0 23 {B115R:C -> B114R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 12 . . 3 . . 9 . 14 16 . . 4 . . 11 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A103R:C 0 1 A104R:G 0 2 A105R:A 0 3 A106R:G 0 4 B111R:C 0 5 B112R:G 0 6 B113R:A 0 7 B114R:G 0 [Edges] 0 {A103R:C -> A104R:G: adjacent_5p upward } 0 1 {A104R:G -> A103R:C: adjacent_3p downward } 0 2 {A103R:C -> B114R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B114R:G -> A103R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A104R:G -> A105R:A: adjacent_5p } 0 5 {A105R:A -> A104R:G: adjacent_3p } 0 6 {A104R:G -> B112R:G: inward } 0 7 {B112R:G -> A104R:G: inward } 0 8 {A104R:G -> B113R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {B113R:A -> A104R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {A105R:A -> A106R:G: adjacent_5p upward } 0 11 {A106R:G -> A105R:A: adjacent_3p downward } 0 12 {A105R:A -> B112R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {B112R:G -> A105R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {A105R:A -> B113R:A: outward } 0 15 {B113R:A -> A105R:A: outward } 0 16 {A106R:G -> B111R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {B111R:C -> A106R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {B111R:C -> B112R:G: adjacent_5p upward } 0 19 {B112R:G -> B111R:C: adjacent_3p downward } 0 20 {B112R:G -> B113R:A: adjacent_5p } 0 21 {B113R:A -> B112R:G: adjacent_3p } 0 22 {B113R:A -> B114R:G: adjacent_5p upward } 0 23 {B114R:G -> B113R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . 7 13 . 19 . 20 . 6 . 9 15 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A104R:G 0 1 A105R:A 0 2 A106R:G 0 3 A107R:C 0 4 B110R:G 0 5 B111R:C 0 6 B112R:G 0 7 B113R:A 0 [Edges] 0 {A104R:G -> A105R:A: adjacent_5p } 0 1 {A105R:A -> A104R:G: adjacent_3p } 0 2 {A104R:G -> B112R:G: inward } 0 3 {B112R:G -> A104R:G: inward } 0 4 {A104R:G -> B113R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {B113R:A -> A104R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {A105R:A -> A106R:G: adjacent_5p upward } 0 7 {A106R:G -> A105R:A: adjacent_3p downward } 0 8 {A105R:A -> B112R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {B112R:G -> A105R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {A105R:A -> B113R:A: outward } 0 11 {B113R:A -> A105R:A: outward } 0 12 {A106R:G -> A107R:C: adjacent_5p upward } 0 13 {A107R:C -> A106R:G: adjacent_3p downward } 0 14 {A106R:G -> B111R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B111R:C -> A106R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A107R:C -> B110R:G: pairing antiparallel cis XIX Ww/Ww } 0 17 {B110R:G -> A107R:C: pairing antiparallel cis XIX Ww/Ww } 0 18 {B110R:G -> B111R:C: adjacent_5p upward } 0 19 {B111R:C -> B110R:G: adjacent_3p downward } 0 20 {B111R:C -> B112R:G: adjacent_5p upward } 0 21 {B112R:G -> B111R:C: adjacent_3p downward } 0 22 {B112R:G -> B113R:A: adjacent_5p } 0 23 {B113R:A -> B112R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 18 . . 5 . . 15 . 19 . 20 . 6 3 9 . . . 21 . 22 7 5 11 . . . . 23 . [GraphModel] [Vertices] 0 C202R:G 0 1 C203R:C 0 2 C204R:G 0 3 C205R:A 0 4 D212R:G 0 5 D213R:A 0 6 D214R:G 0 7 D215R:C 0 [Edges] 0 {C202R:G -> C203R:C: adjacent_5p upward } 0 1 {C203R:C -> C202R:G: adjacent_3p downward } 0 2 {C202R:G -> D215R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D215R:C -> C202R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C203R:C -> C204R:G: adjacent_5p upward } 0 5 {C204R:G -> C203R:C: adjacent_3p downward } 0 6 {C203R:C -> D214R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D214R:G -> C203R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C204R:G -> C205R:A: adjacent_5p } 0 9 {C205R:A -> C204R:G: adjacent_3p } 0 10 {C204R:G -> D212R:G: inward } 0 11 {D212R:G -> C204R:G: inward } 0 12 {C204R:G -> D213R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {D213R:A -> C204R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {C205R:A -> D212R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 15 {D212R:G -> C205R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 16 {C205R:A -> D213R:A: outward } 0 17 {D213R:A -> C205R:A: outward } 0 18 {D212R:G -> D213R:A: adjacent_5p } 0 19 {D213R:A -> D212R:G: adjacent_3p } 0 20 {D213R:A -> D214R:G: adjacent_5p upward } 0 21 {D214R:G -> D213R:A: adjacent_3p downward } 0 22 {D214R:G -> D215R:C: adjacent_5p upward } 0 23 {D215R:C -> D214R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 12 . . 3 . . 9 . 14 16 . . 4 . . 11 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 C203R:C 0 1 C204R:G 0 2 C205R:A 0 3 C206R:G 0 4 D211R:C 0 5 D212R:G 0 6 D213R:A 0 7 D214R:G 0 [Edges] 0 {C203R:C -> C204R:G: adjacent_5p upward } 0 1 {C204R:G -> C203R:C: adjacent_3p downward } 0 2 {C203R:C -> D214R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D214R:G -> C203R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C204R:G -> C205R:A: adjacent_5p } 0 5 {C205R:A -> C204R:G: adjacent_3p } 0 6 {C204R:G -> D212R:G: inward } 0 7 {D212R:G -> C204R:G: inward } 0 8 {C204R:G -> D213R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {D213R:A -> C204R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {C205R:A -> C206R:G: adjacent_5p upward } 0 11 {C206R:G -> C205R:A: adjacent_3p downward } 0 12 {C205R:A -> D212R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 13 {D212R:G -> C205R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 14 {C205R:A -> D213R:A: outward } 0 15 {D213R:A -> C205R:A: outward } 0 16 {C206R:G -> D211R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {D211R:C -> C206R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {D211R:C -> D212R:G: adjacent_5p upward } 0 19 {D212R:G -> D211R:C: adjacent_3p downward } 0 20 {D212R:G -> D213R:A: adjacent_5p } 0 21 {D213R:A -> D212R:G: adjacent_3p } 0 22 {D213R:A -> D214R:G: adjacent_5p upward } 0 23 {D214R:G -> D213R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . 7 13 . 19 . 20 . 6 . 9 15 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 C204R:G 0 1 C205R:A 0 2 C206R:G 0 3 C207R:C 0 4 D210R:G 0 5 D211R:C 0 6 D212R:G 0 7 D213R:A 0 [Edges] 0 {C204R:G -> C205R:A: adjacent_5p } 0 1 {C205R:A -> C204R:G: adjacent_3p } 0 2 {C204R:G -> D212R:G: inward } 0 3 {D212R:G -> C204R:G: inward } 0 4 {C204R:G -> D213R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {D213R:A -> C204R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {C205R:A -> C206R:G: adjacent_5p upward } 0 7 {C206R:G -> C205R:A: adjacent_3p downward } 0 8 {C205R:A -> D212R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 9 {D212R:G -> C205R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 10 {C205R:A -> D213R:A: outward } 0 11 {D213R:A -> C205R:A: outward } 0 12 {C206R:G -> C207R:C: adjacent_5p upward } 0 13 {C207R:C -> C206R:G: adjacent_3p downward } 0 14 {C206R:G -> D211R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D211R:C -> C206R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C207R:C -> D210R:G: pairing antiparallel cis XIX Ww/Ww } 0 17 {D210R:G -> C207R:C: pairing antiparallel cis XIX Ww/Ww } 0 18 {D210R:G -> D211R:C: adjacent_5p upward } 0 19 {D211R:C -> D210R:G: adjacent_3p downward } 0 20 {D211R:C -> D212R:G: adjacent_5p upward } 0 21 {D212R:G -> D211R:C: adjacent_3p downward } 0 22 {D212R:G -> D213R:A: adjacent_5p } 0 23 {D213R:A -> D212R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 18 . . 5 . . 15 . 19 . 20 . 6 3 9 . . . 21 . 22 7 5 11 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A103R:C 0 1 A104R:G 0 2 A105R:A 0 3 A106R:G 0 4 B111R:C 0 5 B112R:G 0 6 B113R:A 0 7 B114R:G 0 [Edges] 0 {A103R:C -> A104R:G: adjacent_5p upward } 0 1 {A104R:G -> A103R:C: adjacent_3p downward } 0 2 {A103R:C -> B114R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B114R:G -> A103R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A104R:G -> A105R:A: adjacent_5p } 0 5 {A105R:A -> A104R:G: adjacent_3p } 0 6 {A104R:G -> B112R:G: inward } 0 7 {B112R:G -> A104R:G: inward } 0 8 {A104R:G -> B113R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {B113R:A -> A104R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {A105R:A -> A106R:G: adjacent_5p upward } 0 11 {A106R:G -> A105R:A: adjacent_3p downward } 0 12 {A105R:A -> B112R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {B112R:G -> A105R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {A105R:A -> B113R:A: outward } 0 15 {B113R:A -> A105R:A: outward } 0 16 {A106R:G -> B111R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {B111R:C -> A106R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {B111R:C -> B112R:G: adjacent_5p upward } 0 19 {B112R:G -> B111R:C: adjacent_3p downward } 0 20 {B112R:G -> B113R:A: adjacent_5p } 0 21 {B113R:A -> B112R:G: adjacent_3p } 0 22 {B113R:A -> B114R:G: adjacent_5p upward } 0 23 {B114R:G -> B113R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . 7 13 . 19 . 20 . 6 . 9 15 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 C203R:C 0 1 C204R:G 0 2 C205R:A 0 3 C206R:G 0 4 D211R:C 0 5 D212R:G 0 6 D213R:A 0 7 D214R:G 0 [Edges] 0 {C203R:C -> C204R:G: adjacent_5p upward } 0 1 {C204R:G -> C203R:C: adjacent_3p downward } 0 2 {C203R:C -> D214R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D214R:G -> C203R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C204R:G -> C205R:A: adjacent_5p } 0 5 {C205R:A -> C204R:G: adjacent_3p } 0 6 {C204R:G -> D212R:G: inward } 0 7 {D212R:G -> C204R:G: inward } 0 8 {C204R:G -> D213R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 9 {D213R:A -> C204R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 10 {C205R:A -> C206R:G: adjacent_5p upward } 0 11 {C206R:G -> C205R:A: adjacent_3p downward } 0 12 {C205R:A -> D212R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 13 {D212R:G -> C205R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 14 {C205R:A -> D213R:A: outward } 0 15 {D213R:A -> C205R:A: outward } 0 16 {C206R:G -> D211R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {D211R:C -> C206R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {D211R:C -> D212R:G: adjacent_5p upward } 0 19 {D212R:G -> D211R:C: adjacent_3p downward } 0 20 {D212R:G -> D213R:A: adjacent_5p } 0 21 {D213R:A -> D212R:G: adjacent_3p } 0 22 {D213R:A -> D214R:G: adjacent_5p upward } 0 23 {D214R:G -> D213R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . 7 13 . 19 . 20 . 6 . 9 15 . . 21 . 22 7 3 . . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A2R:A 0 1 A3R:A 0 2 A4R:G 0 3 A5R:G 0 4 B20R:C 0 5 B21R:C 0 6 B22R:U 0 7 B23R:U 0 [Edges] 0 {A2R:A -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:A: adjacent_3p downward } 0 2 {A2R:A -> B23R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B23R:U -> A2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:A -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> B22R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B22R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> B21R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B21R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B20R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A5R:G -> B21R:C: outward } 0 15 {B21R:C -> A5R:G: outward } 0 16 {B20R:C -> B21R:C: adjacent_5p } 0 17 {B21R:C -> B20R:C: adjacent_3p } 0 18 {B21R:C -> B22R:U: adjacent_5p } 0 19 {B22R:U -> B21R:C: adjacent_3p } 0 20 {B22R:U -> B23R:U: adjacent_5p upward } 0 21 {B23R:U -> B22R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:G 0 2 A5R:G 0 3 A6R:A 0 4 B19R:U 0 5 B20R:C 0 6 B21R:C 0 7 B22R:U 0 [Edges] 0 {A3R:A -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> B22R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B22R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B21R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A6R:A: adjacent_5p upward } 0 9 {A6R:A -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B20R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> B21R:C: outward } 0 13 {B21R:C -> A5R:G: outward } 0 14 {A6R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B19R:U -> B20R:C: adjacent_5p upward } 0 17 {B20R:C -> B19R:U: adjacent_3p downward } 0 18 {B20R:C -> B21R:C: adjacent_5p } 0 19 {B21R:C -> B20R:C: adjacent_3p } 0 20 {B21R:C -> B22R:U: adjacent_5p } 0 21 {B22R:U -> B21R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:G 0 2 A6R:A 0 3 A7R:G 0 4 B18R:C 0 5 B19R:U 0 6 B20R:C 0 7 B21R:C 0 [Edges] 0 {A4R:G -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B21R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:G -> A6R:A: adjacent_5p upward } 0 5 {A6R:A -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B20R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> B21R:C: outward } 0 9 {B21R:C -> A5R:G: outward } 0 10 {A6R:A -> A7R:G: adjacent_5p upward } 0 11 {A7R:G -> A6R:A: adjacent_3p downward } 0 12 {A6R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A7R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B18R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B18R:C -> B19R:U: adjacent_5p upward } 0 17 {B19R:U -> B18R:C: adjacent_3p downward } 0 18 {B19R:U -> B20R:C: adjacent_5p upward } 0 19 {B20R:C -> B19R:U: adjacent_3p downward } 0 20 {B20R:C -> B21R:C: adjacent_5p } 0 21 {B21R:C -> B20R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:A 0 2 A7R:G 0 3 A8R:G 0 4 B17R:C 0 5 B18R:C 0 6 B19R:U 0 7 B20R:C 0 [Edges] 0 {A5R:G -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B20R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:A -> A7R:G: adjacent_5p upward } 0 5 {A7R:G -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:G -> A8R:G: adjacent_5p upward } 0 9 {A8R:G -> A7R:G: adjacent_3p downward } 0 10 {A7R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B18R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B17R:C -> B18R:C: adjacent_5p upward } 0 15 {B18R:C -> B17R:C: adjacent_3p downward } 0 16 {B18R:C -> B19R:U: adjacent_5p upward } 0 17 {B19R:U -> B18R:C: adjacent_3p downward } 0 18 {B19R:U -> B20R:C: adjacent_5p upward } 0 19 {B20R:C -> B19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:G 0 2 A8R:G 0 3 A9R:U 0 4 B16R:A 0 5 B17R:C 0 6 B18R:C 0 7 B19R:U 0 [Edges] 0 {A6R:A -> A7R:G: adjacent_5p upward } 0 1 {A7R:G -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:G -> A8R:G: adjacent_5p upward } 0 5 {A8R:G -> A7R:G: adjacent_3p downward } 0 6 {A7R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B18R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:G -> A9R:U: adjacent_5p upward } 0 9 {A9R:U -> A8R:G: adjacent_3p downward } 0 10 {A8R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:U -> B16R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B16R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B16R:A -> B17R:C: adjacent_5p upward } 0 15 {B17R:C -> B16R:A: adjacent_3p downward } 0 16 {B17R:C -> B18R:C: adjacent_5p upward } 0 17 {B18R:C -> B17R:C: adjacent_3p downward } 0 18 {B18R:C -> B19R:U: adjacent_5p upward } 0 19 {B19R:U -> B18R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:G 0 2 A9R:U 0 3 A10R:G 0 4 B15R:C 0 5 B16R:A 0 6 B17R:C 0 7 B18R:C 0 [Edges] 0 {A7R:G -> A8R:G: adjacent_5p upward } 0 1 {A8R:G -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B18R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:G -> A9R:U: adjacent_5p upward } 0 5 {A9R:U -> A8R:G: adjacent_3p downward } 0 6 {A8R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:U -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:U: adjacent_3p downward } 0 10 {A9R:U -> B16R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B16R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A10R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B15R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A10R:G -> B16R:A: outward } 0 15 {B16R:A -> A10R:G: outward } 0 16 {B15R:C -> B16R:A: adjacent_5p upward } 0 17 {B16R:A -> B15R:C: adjacent_3p downward } 0 18 {B16R:A -> B17R:C: adjacent_5p upward } 0 19 {B17R:C -> B16R:A: adjacent_3p downward } 0 20 {B17R:C -> B18R:C: adjacent_5p upward } 0 21 {B18R:C -> B17R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:U 0 2 A10R:G 0 3 A11R:A 0 4 B14R:U 0 5 B15R:C 0 6 B16R:A 0 7 B17R:C 0 [Edges] 0 {A8R:G -> A9R:U: adjacent_5p upward } 0 1 {A9R:U -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:U -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:U: adjacent_3p downward } 0 6 {A9R:U -> B16R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B16R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A10R:G -> A11R:A: adjacent_5p upward } 0 9 {A11R:A -> A10R:G: adjacent_3p downward } 0 10 {A10R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B15R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:G -> B16R:A: outward } 0 13 {B16R:A -> A10R:G: outward } 0 14 {A11R:A -> B14R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B14R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B14R:U -> B15R:C: adjacent_5p upward } 0 17 {B15R:C -> B14R:U: adjacent_3p downward } 0 18 {B15R:C -> B16R:A: adjacent_5p upward } 0 19 {B16R:A -> B15R:C: adjacent_3p downward } 0 20 {B16R:A -> B17R:C: adjacent_5p upward } 0 21 {B17R:C -> B16R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C26R:A 0 1 C27R:A 0 2 C28R:G 0 3 C29R:G 0 4 D44R:C 0 5 D45R:C 0 6 D46R:U 0 7 D47R:U 0 [Edges] 0 {C26R:A -> C27R:A: adjacent_5p upward } 0 1 {C27R:A -> C26R:A: adjacent_3p downward } 0 2 {C26R:A -> D47R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D47R:U -> C26R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C27R:A -> C28R:G: adjacent_5p upward } 0 5 {C28R:G -> C27R:A: adjacent_3p downward } 0 6 {C27R:A -> D46R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D46R:U -> C27R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C28R:G -> C29R:G: adjacent_5p upward } 0 9 {C29R:G -> C28R:G: adjacent_3p downward } 0 10 {C28R:G -> D45R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D45R:C -> C28R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C29R:G -> D44R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D44R:C -> C29R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D44R:C -> D45R:C: adjacent_5p upward } 0 15 {D45R:C -> D44R:C: adjacent_3p downward } 0 16 {D45R:C -> D46R:U: adjacent_5p upward } 0 17 {D46R:U -> D45R:C: adjacent_3p downward } 0 18 {D46R:U -> D47R:U: adjacent_5p upward } 0 19 {D47R:U -> D46R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C27R:A 0 1 C28R:G 0 2 C29R:G 0 3 C30R:A 0 4 D43R:U 0 5 D44R:C 0 6 D45R:C 0 7 D46R:U 0 [Edges] 0 {C27R:A -> C28R:G: adjacent_5p upward } 0 1 {C28R:G -> C27R:A: adjacent_3p downward } 0 2 {C27R:A -> D46R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D46R:U -> C27R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C28R:G -> C29R:G: adjacent_5p upward } 0 5 {C29R:G -> C28R:G: adjacent_3p downward } 0 6 {C28R:G -> D45R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D45R:C -> C28R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C29R:G -> C30R:A: adjacent_5p upward } 0 9 {C30R:A -> C29R:G: adjacent_3p downward } 0 10 {C29R:G -> D44R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D44R:C -> C29R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C30R:A -> D43R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {D43R:U -> C30R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {D43R:U -> D44R:C: adjacent_5p } 0 15 {D44R:C -> D43R:U: adjacent_3p } 0 16 {D44R:C -> D45R:C: adjacent_5p upward } 0 17 {D45R:C -> D44R:C: adjacent_3p downward } 0 18 {D45R:C -> D46R:U: adjacent_5p upward } 0 19 {D46R:U -> D45R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C28R:G 0 1 C29R:G 0 2 C30R:A 0 3 C31R:G 0 4 D42R:C 0 5 D43R:U 0 6 D44R:C 0 7 D45R:C 0 [Edges] 0 {C28R:G -> C29R:G: adjacent_5p upward } 0 1 {C29R:G -> C28R:G: adjacent_3p downward } 0 2 {C28R:G -> D45R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D45R:C -> C28R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C29R:G -> C30R:A: adjacent_5p upward } 0 5 {C30R:A -> C29R:G: adjacent_3p downward } 0 6 {C29R:G -> D44R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D44R:C -> C29R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C30R:A -> C31R:G: adjacent_5p upward } 0 9 {C31R:G -> C30R:A: adjacent_3p downward } 0 10 {C30R:A -> D43R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D43R:U -> C30R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C31R:G -> D42R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D42R:C -> C31R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D42R:C -> D43R:U: adjacent_5p } 0 15 {D43R:U -> D42R:C: adjacent_3p } 0 16 {D43R:U -> D44R:C: adjacent_5p } 0 17 {D44R:C -> D43R:U: adjacent_3p } 0 18 {D44R:C -> D45R:C: adjacent_5p upward } 0 19 {D45R:C -> D44R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C29R:G 0 1 C30R:A 0 2 C31R:G 0 3 C32R:G 0 4 D41R:C 0 5 D42R:C 0 6 D43R:U 0 7 D44R:C 0 [Edges] 0 {C29R:G -> C30R:A: adjacent_5p upward } 0 1 {C30R:A -> C29R:G: adjacent_3p downward } 0 2 {C29R:G -> D44R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D44R:C -> C29R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C30R:A -> C31R:G: adjacent_5p upward } 0 5 {C31R:G -> C30R:A: adjacent_3p downward } 0 6 {C30R:A -> D43R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D43R:U -> C30R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C31R:G -> C32R:G: adjacent_5p upward } 0 9 {C32R:G -> C31R:G: adjacent_3p downward } 0 10 {C31R:G -> D42R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D42R:C -> C31R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C32R:G -> D41R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D41R:C -> C32R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D41R:C -> D42R:C: adjacent_5p upward } 0 15 {D42R:C -> D41R:C: adjacent_3p downward } 0 16 {D42R:C -> D43R:U: adjacent_5p } 0 17 {D43R:U -> D42R:C: adjacent_3p } 0 18 {D43R:U -> D44R:C: adjacent_5p } 0 19 {D44R:C -> D43R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C30R:A 0 1 C31R:G 0 2 C32R:G 0 3 C33R:U 0 4 D40R:A 0 5 D41R:C 0 6 D42R:C 0 7 D43R:U 0 [Edges] 0 {C30R:A -> C31R:G: adjacent_5p upward } 0 1 {C31R:G -> C30R:A: adjacent_3p downward } 0 2 {C30R:A -> D43R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D43R:U -> C30R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C31R:G -> C32R:G: adjacent_5p upward } 0 5 {C32R:G -> C31R:G: adjacent_3p downward } 0 6 {C31R:G -> D42R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D42R:C -> C31R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C32R:G -> C33R:U: adjacent_5p upward } 0 9 {C33R:U -> C32R:G: adjacent_3p downward } 0 10 {C32R:G -> D41R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D41R:C -> C32R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C33R:U -> D40R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {D40R:A -> C33R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {D40R:A -> D41R:C: adjacent_5p upward } 0 15 {D41R:C -> D40R:A: adjacent_3p downward } 0 16 {D41R:C -> D42R:C: adjacent_5p upward } 0 17 {D42R:C -> D41R:C: adjacent_3p downward } 0 18 {D42R:C -> D43R:U: adjacent_5p } 0 19 {D43R:U -> D42R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C31R:G 0 1 C32R:G 0 2 C33R:U 0 3 C34R:G 0 4 D39R:C 0 5 D40R:A 0 6 D41R:C 0 7 D42R:C 0 [Edges] 0 {C31R:G -> C32R:G: adjacent_5p upward } 0 1 {C32R:G -> C31R:G: adjacent_3p downward } 0 2 {C31R:G -> D42R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D42R:C -> C31R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C32R:G -> C33R:U: adjacent_5p upward } 0 5 {C33R:U -> C32R:G: adjacent_3p downward } 0 6 {C32R:G -> D41R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D41R:C -> C32R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C33R:U -> C34R:G: adjacent_5p upward } 0 9 {C34R:G -> C33R:U: adjacent_3p downward } 0 10 {C33R:U -> D40R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D40R:A -> C33R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C34R:G -> D39R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D39R:C -> C34R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C34R:G -> D40R:A: outward } 0 15 {D40R:A -> C34R:G: outward } 0 16 {D39R:C -> D40R:A: adjacent_5p upward } 0 17 {D40R:A -> D39R:C: adjacent_3p downward } 0 18 {D40R:A -> D41R:C: adjacent_5p upward } 0 19 {D41R:C -> D40R:A: adjacent_3p downward } 0 20 {D41R:C -> D42R:C: adjacent_5p upward } 0 21 {D42R:C -> D41R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C32R:G 0 1 C33R:U 0 2 C34R:G 0 3 C35R:A 0 4 D38R:U 0 5 D39R:C 0 6 D40R:A 0 7 D41R:C 0 [Edges] 0 {C32R:G -> C33R:U: adjacent_5p upward } 0 1 {C33R:U -> C32R:G: adjacent_3p downward } 0 2 {C32R:G -> D41R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D41R:C -> C32R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C33R:U -> C34R:G: adjacent_5p upward } 0 5 {C34R:G -> C33R:U: adjacent_3p downward } 0 6 {C33R:U -> D40R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D40R:A -> C33R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C34R:G -> C35R:A: adjacent_5p upward } 0 9 {C35R:A -> C34R:G: adjacent_3p downward } 0 10 {C34R:G -> D39R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D39R:C -> C34R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C34R:G -> D40R:A: outward } 0 13 {D40R:A -> C34R:G: outward } 0 14 {C35R:A -> D38R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {D38R:U -> C35R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {D38R:U -> D39R:C: adjacent_5p upward } 0 17 {D39R:C -> D38R:U: adjacent_3p downward } 0 18 {D39R:C -> D40R:A: adjacent_5p upward } 0 19 {D40R:A -> D39R:C: adjacent_3p downward } 0 20 {D40R:A -> D41R:C: adjacent_5p upward } 0 21 {D41R:C -> D40R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 T4R:G 0 1 T5R:A 0 2 T6R:G 0 3 T7R:G 0 4 T66R:C 0 5 T67R:C 0 6 T68R:U 0 7 T69R:C 0 [Edges] 0 {T4R:G -> T5R:A: adjacent_5p upward } 0 1 {T5R:A -> T4R:G: adjacent_3p downward } 0 2 {T4R:G -> T69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {T69R:C -> T4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {T5R:A -> T6R:G: adjacent_5p upward } 0 5 {T6R:G -> T5R:A: adjacent_3p downward } 0 6 {T5R:A -> T68R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {T68R:U -> T5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {T6R:G -> T7R:G: adjacent_5p upward } 0 9 {T7R:G -> T6R:G: adjacent_3p downward } 0 10 {T6R:G -> T67R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {T67R:C -> T6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {T7R:G -> T66R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {T66R:C -> T7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {T66R:C -> T67R:C: adjacent_5p upward } 0 15 {T67R:C -> T66R:C: adjacent_3p downward } 0 16 {T67R:C -> T68R:U: adjacent_5p } 0 17 {T68R:U -> T67R:C: adjacent_3p } 0 18 {T68R:U -> T69R:C: adjacent_5p upward } 0 19 {T69R:C -> T68R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 T10R:C 0 1 T11R:C 0 2 T12R:C 0 3 T13R:G 0 4 T22R:A 0 5 T23R:G 0 6 T24R:G 0 7 T25R:G 0 [Edges] 0 {T10R:C -> T11R:C: adjacent_5p upward } 0 1 {T11R:C -> T10R:C: adjacent_3p downward } 0 2 {T10R:C -> T25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {T25R:G -> T10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {T11R:C -> T12R:C: adjacent_5p } 0 5 {T12R:C -> T11R:C: adjacent_3p } 0 6 {T11R:C -> T24R:G: pairing antiparallel cis Ww/Ww } 0 7 {T24R:G -> T11R:C: pairing antiparallel cis Ww/Ww } 0 8 {T12R:C -> T13R:G: adjacent_5p upward } 0 9 {T13R:G -> T12R:C: adjacent_3p downward } 0 10 {T12R:C -> T23R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {T23R:G -> T12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {T13R:G -> T22R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {T22R:A -> T13R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {T22R:A -> T23R:G: adjacent_5p upward } 0 15 {T23R:G -> T22R:A: adjacent_3p downward } 0 16 {T23R:G -> T24R:G: adjacent_5p upward } 0 17 {T24R:G -> T23R:G: adjacent_3p downward } 0 18 {T24R:G -> T25R:G: adjacent_5p upward } 0 19 {T25R:G -> T24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 T45R:A 0 1 T46R:G 0 2 T47R:G 0 3 T47.AR:G 0 4 T47.NR:C 0 5 T47.OR:C 0 6 T47.PR:C 0 7 T47.QR:U 0 [Edges] 0 {T45R:A -> T46R:G: adjacent_5p upward } 0 1 {T46R:G -> T45R:A: adjacent_3p downward } 0 2 {T45R:A -> T47.QR:U: pairing antiparallel cis XX Ww/Ww } 0 3 {T47.QR:U -> T45R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {T46R:G -> T47R:G: adjacent_5p upward } 0 5 {T47R:G -> T46R:G: adjacent_3p downward } 0 6 {T46R:G -> T47.PR:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {T47.PR:C -> T46R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {T47R:G -> T47.AR:G: adjacent_5p upward } 0 9 {T47.AR:G -> T47R:G: adjacent_3p downward } 0 10 {T47R:G -> T47.OR:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {T47.OR:C -> T47R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {T47.AR:G -> T47.NR:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {T47.NR:C -> T47.AR:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {T47.NR:C -> T47.OR:C: adjacent_5p upward } 0 15 {T47.OR:C -> T47.NR:C: adjacent_3p downward } 0 16 {T47.OR:C -> T47.PR:C: adjacent_5p } 0 17 {T47.PR:C -> T47.OR:C: adjacent_3p } 0 18 {T47.PR:C -> T47.QR:U: adjacent_5p upward } 0 19 {T47.QR:U -> T47.PR:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 T46R:G 0 1 T47R:G 0 2 T47.AR:G 0 3 T47.BR:G 0 4 T47.MR:U 0 5 T47.NR:C 0 6 T47.OR:C 0 7 T47.PR:C 0 [Edges] 0 {T46R:G -> T47R:G: adjacent_5p upward } 0 1 {T47R:G -> T46R:G: adjacent_3p downward } 0 2 {T46R:G -> T47.PR:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {T47.PR:C -> T46R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {T47R:G -> T47.AR:G: adjacent_5p upward } 0 5 {T47.AR:G -> T47R:G: adjacent_3p downward } 0 6 {T47R:G -> T47.OR:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {T47.OR:C -> T47R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {T47.AR:G -> T47.BR:G: adjacent_5p upward } 0 9 {T47.BR:G -> T47.AR:G: adjacent_3p downward } 0 10 {T47.AR:G -> T47.NR:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {T47.NR:C -> T47.AR:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {T47.BR:G -> T47.MR:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {T47.MR:U -> T47.BR:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {T47.MR:U -> T47.NR:C: adjacent_5p } 0 15 {T47.NR:C -> T47.MR:U: adjacent_3p } 0 16 {T47.NR:C -> T47.OR:C: adjacent_5p upward } 0 17 {T47.OR:C -> T47.NR:C: adjacent_3p downward } 0 18 {T47.OR:C -> T47.PR:C: adjacent_5p } 0 19 {T47.PR:C -> T47.OR:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 T47R:G 0 1 T47.AR:G 0 2 T47.BR:G 0 3 T47.CR:G 0 4 T47.LR:C 0 5 T47.MR:U 0 6 T47.NR:C 0 7 T47.OR:C 0 [Edges] 0 {T47R:G -> T47.AR:G: adjacent_5p upward } 0 1 {T47.AR:G -> T47R:G: adjacent_3p downward } 0 2 {T47R:G -> T47.OR:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {T47.OR:C -> T47R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {T47.AR:G -> T47.BR:G: adjacent_5p upward } 0 5 {T47.BR:G -> T47.AR:G: adjacent_3p downward } 0 6 {T47.AR:G -> T47.NR:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {T47.NR:C -> T47.AR:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {T47.BR:G -> T47.CR:G: adjacent_5p upward } 0 9 {T47.CR:G -> T47.BR:G: adjacent_3p downward } 0 10 {T47.BR:G -> T47.MR:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {T47.MR:U -> T47.BR:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {T47.CR:G -> T47.LR:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {T47.LR:C -> T47.CR:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {T47.LR:C -> T47.MR:U: adjacent_5p upward } 0 15 {T47.MR:U -> T47.LR:C: adjacent_3p downward } 0 16 {T47.MR:U -> T47.NR:C: adjacent_5p } 0 17 {T47.NR:C -> T47.MR:U: adjacent_3p } 0 18 {T47.NR:C -> T47.OR:C: adjacent_5p upward } 0 19 {T47.OR:C -> T47.NR:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 T47.AR:G 0 1 T47.BR:G 0 2 T47.CR:G 0 3 T47.DR:G 0 4 T47.KR:C 0 5 T47.LR:C 0 6 T47.MR:U 0 7 T47.NR:C 0 [Edges] 0 {T47.AR:G -> T47.BR:G: adjacent_5p upward } 0 1 {T47.BR:G -> T47.AR:G: adjacent_3p downward } 0 2 {T47.AR:G -> T47.NR:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {T47.NR:C -> T47.AR:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {T47.BR:G -> T47.CR:G: adjacent_5p upward } 0 5 {T47.CR:G -> T47.BR:G: adjacent_3p downward } 0 6 {T47.BR:G -> T47.MR:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {T47.MR:U -> T47.BR:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {T47.CR:G -> T47.DR:G: adjacent_5p upward } 0 9 {T47.DR:G -> T47.CR:G: adjacent_3p downward } 0 10 {T47.CR:G -> T47.LR:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {T47.LR:C -> T47.CR:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {T47.DR:G -> T47.KR:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {T47.KR:C -> T47.DR:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {T47.KR:C -> T47.LR:C: adjacent_5p } 0 15 {T47.LR:C -> T47.KR:C: adjacent_3p } 0 16 {T47.LR:C -> T47.MR:U: adjacent_5p upward } 0 17 {T47.MR:U -> T47.LR:C: adjacent_3p downward } 0 18 {T47.MR:U -> T47.NR:C: adjacent_5p } 0 19 {T47.NR:C -> T47.MR:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 T49R:G 0 1 T50R:C 0 2 T51R:G 0 3 T52R:G 0 4 T62R:C 0 5 T63R:C 0 6 T64R:G 0 7 T65R:C 0 [Edges] 0 {T49R:G -> T50R:C: adjacent_5p upward } 0 1 {T50R:C -> T49R:G: adjacent_3p downward } 0 2 {T49R:G -> T65R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {T65R:C -> T49R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {T50R:C -> T51R:G: adjacent_5p upward } 0 5 {T51R:G -> T50R:C: adjacent_3p downward } 0 6 {T50R:C -> T64R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {T64R:G -> T50R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {T51R:G -> T52R:G: adjacent_5p upward } 0 9 {T52R:G -> T51R:G: adjacent_3p downward } 0 10 {T51R:G -> T63R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {T63R:C -> T51R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {T51R:G -> T64R:G: outward } 0 13 {T64R:G -> T51R:G: outward } 0 14 {T52R:G -> T62R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {T62R:C -> T52R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {T62R:C -> T63R:C: adjacent_5p } 0 17 {T63R:C -> T62R:C: adjacent_3p } 0 18 {T63R:C -> T64R:G: adjacent_5p } 0 19 {T64R:G -> T63R:C: adjacent_3p } 0 20 {T64R:G -> T65R:C: adjacent_5p upward } 0 21 {T65R:C -> T64R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 T50R:C 0 1 T51R:G 0 2 T52R:G 0 3 T53R:G 0 4 T61R:C 0 5 T62R:C 0 6 T63R:C 0 7 T64R:G 0 [Edges] 0 {T50R:C -> T51R:G: adjacent_5p upward } 0 1 {T51R:G -> T50R:C: adjacent_3p downward } 0 2 {T50R:C -> T64R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {T64R:G -> T50R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {T51R:G -> T52R:G: adjacent_5p upward } 0 5 {T52R:G -> T51R:G: adjacent_3p downward } 0 6 {T51R:G -> T63R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {T63R:C -> T51R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {T51R:G -> T64R:G: outward } 0 9 {T64R:G -> T51R:G: outward } 0 10 {T52R:G -> T53R:G: adjacent_5p upward } 0 11 {T53R:G -> T52R:G: adjacent_3p downward } 0 12 {T52R:G -> T62R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {T62R:C -> T52R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {T53R:G -> T61R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {T61R:C -> T53R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {T53R:G -> T62R:C: outward } 0 17 {T62R:C -> T53R:G: outward } 0 18 {T61R:C -> T62R:C: adjacent_5p } 0 19 {T62R:C -> T61R:C: adjacent_3p } 0 20 {T62R:C -> T63R:C: adjacent_5p } 0 21 {T63R:C -> T62R:C: adjacent_3p } 0 22 {T63R:C -> T64R:G: adjacent_5p } 0 23 {T64R:G -> T63R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 R101R:G 0 1 R102R:G 0 2 R103R:C 0 3 R104R:C 0 4 R134R:G 0 5 R135R:G 0 6 R136R:C 0 7 R137R:U 0 [Edges] 0 {R101R:G -> R102R:G: adjacent_5p upward } 0 1 {R102R:G -> R101R:G: adjacent_3p downward } 0 2 {R101R:G -> R137R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {R137R:U -> R101R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {R102R:G -> R103R:C: adjacent_5p upward } 0 5 {R103R:C -> R102R:G: adjacent_3p downward } 0 6 {R102R:G -> R136R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {R136R:C -> R102R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {R103R:C -> R104R:C: adjacent_5p upward } 0 9 {R104R:C -> R103R:C: adjacent_3p downward } 0 10 {R103R:C -> R135R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {R135R:G -> R103R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {R104R:C -> R134R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {R134R:G -> R104R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {R134R:G -> R135R:G: adjacent_5p upward } 0 15 {R135R:G -> R134R:G: adjacent_3p downward } 0 16 {R135R:G -> R136R:C: adjacent_5p upward } 0 17 {R136R:C -> R135R:G: adjacent_3p downward } 0 18 {R136R:C -> R137R:U: adjacent_5p upward } 0 19 {R137R:U -> R136R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 R102R:G 0 1 R103R:C 0 2 R104R:C 0 3 R105R:G 0 4 R133R:C 0 5 R134R:G 0 6 R135R:G 0 7 R136R:C 0 [Edges] 0 {R102R:G -> R103R:C: adjacent_5p upward } 0 1 {R103R:C -> R102R:G: adjacent_3p downward } 0 2 {R102R:G -> R136R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {R136R:C -> R102R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {R103R:C -> R104R:C: adjacent_5p upward } 0 5 {R104R:C -> R103R:C: adjacent_3p downward } 0 6 {R103R:C -> R135R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R135R:G -> R103R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R104R:C -> R105R:G: adjacent_5p } 0 9 {R105R:G -> R104R:C: adjacent_3p } 0 10 {R104R:C -> R134R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {R134R:G -> R104R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {R105R:G -> R133R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {R133R:C -> R105R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {R105R:G -> R134R:G: outward } 0 15 {R134R:G -> R105R:G: outward } 0 16 {R133R:C -> R134R:G: adjacent_5p } 0 17 {R134R:G -> R133R:C: adjacent_3p } 0 18 {R134R:G -> R135R:G: adjacent_5p upward } 0 19 {R135R:G -> R134R:G: adjacent_3p downward } 0 20 {R135R:G -> R136R:C: adjacent_5p upward } 0 21 {R136R:C -> R135R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 R103R:C 0 1 R104R:C 0 2 R105R:G 0 3 R106R:G 0 4 R132R:C 0 5 R133R:C 0 6 R134R:G 0 7 R135R:G 0 [Edges] 0 {R103R:C -> R104R:C: adjacent_5p upward } 0 1 {R104R:C -> R103R:C: adjacent_3p downward } 0 2 {R103R:C -> R135R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R135R:G -> R103R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R104R:C -> R105R:G: adjacent_5p } 0 5 {R105R:G -> R104R:C: adjacent_3p } 0 6 {R104R:C -> R134R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R134R:G -> R104R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R105R:G -> R106R:G: adjacent_5p upward } 0 9 {R106R:G -> R105R:G: adjacent_3p downward } 0 10 {R105R:G -> R133R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {R133R:C -> R105R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {R105R:G -> R134R:G: outward } 0 13 {R134R:G -> R105R:G: outward } 0 14 {R106R:G -> R132R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {R132R:C -> R106R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {R106R:G -> R133R:C: outward } 0 17 {R133R:C -> R106R:G: outward } 0 18 {R132R:C -> R133R:C: adjacent_5p } 0 19 {R133R:C -> R132R:C: adjacent_3p } 0 20 {R133R:C -> R134R:G: adjacent_5p } 0 21 {R134R:G -> R133R:C: adjacent_3p } 0 22 {R134R:G -> R135R:G: adjacent_5p upward } 0 23 {R135R:G -> R134R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 R104R:C 0 1 R105R:G 0 2 R106R:G 0 3 R107R:C 0 4 R131R:G 0 5 R132R:C 0 6 R133R:C 0 7 R134R:G 0 [Edges] 0 {R104R:C -> R105R:G: adjacent_5p } 0 1 {R105R:G -> R104R:C: adjacent_3p } 0 2 {R104R:C -> R134R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R134R:G -> R104R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R105R:G -> R106R:G: adjacent_5p upward } 0 5 {R106R:G -> R105R:G: adjacent_3p downward } 0 6 {R105R:G -> R133R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {R133R:C -> R105R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {R105R:G -> R134R:G: outward } 0 9 {R134R:G -> R105R:G: outward } 0 10 {R106R:G -> R107R:C: adjacent_5p upward } 0 11 {R107R:C -> R106R:G: adjacent_3p downward } 0 12 {R106R:G -> R132R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {R132R:C -> R106R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {R106R:G -> R133R:C: outward } 0 15 {R133R:C -> R106R:G: outward } 0 16 {R107R:C -> R131R:G: pairing antiparallel cis XIX Ww/Ww } 0 17 {R131R:G -> R107R:C: pairing antiparallel cis XIX Ww/Ww } 0 18 {R131R:G -> R132R:C: adjacent_5p upward } 0 19 {R132R:C -> R131R:G: adjacent_3p downward } 0 20 {R132R:C -> R133R:C: adjacent_5p } 0 21 {R133R:C -> R132R:C: adjacent_3p } 0 22 {R133R:C -> R134R:G: adjacent_5p } 0 23 {R134R:G -> R133R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 R111R:G 0 1 R112R:U 0 2 R113R:C 0 3 R114R:C 0 4 R169R:G 0 5 R170R:G 0 6 R171R:A 0 7 R172R:C 0 [Edges] 0 {R111R:G -> R112R:U: adjacent_5p upward } 0 1 {R112R:U -> R111R:G: adjacent_3p downward } 0 2 {R111R:G -> R172R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {R172R:C -> R111R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {R112R:U -> R113R:C: adjacent_5p upward } 0 5 {R113R:C -> R112R:U: adjacent_3p downward } 0 6 {R112R:U -> R171R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {R171R:A -> R112R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {R113R:C -> R114R:C: adjacent_5p upward } 0 9 {R114R:C -> R113R:C: adjacent_3p downward } 0 10 {R113R:C -> R170R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {R170R:G -> R113R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {R114R:C -> R169R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {R169R:G -> R114R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {R169R:G -> R170R:G: adjacent_5p upward } 0 15 {R170R:G -> R169R:G: adjacent_3p downward } 0 16 {R170R:G -> R171R:A: adjacent_5p upward } 0 17 {R171R:A -> R170R:G: adjacent_3p downward } 0 18 {R171R:A -> R172R:C: adjacent_5p upward } 0 19 {R172R:C -> R171R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 R112R:U 0 1 R113R:C 0 2 R114R:C 0 3 R115R:C 0 4 R168R:G 0 5 R169R:G 0 6 R170R:G 0 7 R171R:A 0 [Edges] 0 {R112R:U -> R113R:C: adjacent_5p upward } 0 1 {R113R:C -> R112R:U: adjacent_3p downward } 0 2 {R112R:U -> R171R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {R171R:A -> R112R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {R113R:C -> R114R:C: adjacent_5p upward } 0 5 {R114R:C -> R113R:C: adjacent_3p downward } 0 6 {R113R:C -> R170R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R170R:G -> R113R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R114R:C -> R115R:C: adjacent_5p } 0 9 {R115R:C -> R114R:C: adjacent_3p } 0 10 {R114R:C -> R169R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {R169R:G -> R114R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {R115R:C -> R168R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {R168R:G -> R115R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {R168R:G -> R169R:G: adjacent_5p upward } 0 15 {R169R:G -> R168R:G: adjacent_3p downward } 0 16 {R169R:G -> R170R:G: adjacent_5p upward } 0 17 {R170R:G -> R169R:G: adjacent_3p downward } 0 18 {R170R:G -> R171R:A: adjacent_5p upward } 0 19 {R171R:A -> R170R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 R113R:C 0 1 R114R:C 0 2 R115R:C 0 3 R116R:A 0 4 R167R:U 0 5 R168R:G 0 6 R169R:G 0 7 R170R:G 0 [Edges] 0 {R113R:C -> R114R:C: adjacent_5p upward } 0 1 {R114R:C -> R113R:C: adjacent_3p downward } 0 2 {R113R:C -> R170R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R170R:G -> R113R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R114R:C -> R115R:C: adjacent_5p } 0 5 {R115R:C -> R114R:C: adjacent_3p } 0 6 {R114R:C -> R169R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R169R:G -> R114R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R115R:C -> R116R:A: adjacent_5p } 0 9 {R116R:A -> R115R:C: adjacent_3p } 0 10 {R115R:C -> R168R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {R168R:G -> R115R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {R116R:A -> R167R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {R167R:U -> R116R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {R116R:A -> R168R:G: outward } 0 15 {R168R:G -> R116R:A: outward } 0 16 {R167R:U -> R168R:G: adjacent_5p upward } 0 17 {R168R:G -> R167R:U: adjacent_3p downward } 0 18 {R168R:G -> R169R:G: adjacent_5p upward } 0 19 {R169R:G -> R168R:G: adjacent_3p downward } 0 20 {R169R:G -> R170R:G: adjacent_5p upward } 0 21 {R170R:G -> R169R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 R143R:A 0 1 R144R:C 0 2 R145R:A 0 3 R146R:C 0 4 R159R:G 0 5 R160R:U 0 6 R161R:G 0 7 R162R:G 0 [Edges] 0 {R143R:A -> R144R:C: adjacent_5p upward } 0 1 {R144R:C -> R143R:A: adjacent_3p downward } 0 2 {R143R:A -> R162R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {R162R:G -> R143R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {R144R:C -> R145R:A: adjacent_5p upward } 0 5 {R145R:A -> R144R:C: adjacent_3p downward } 0 6 {R144R:C -> R161R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R161R:G -> R144R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R145R:A -> R146R:C: adjacent_5p upward } 0 9 {R146R:C -> R145R:A: adjacent_3p downward } 0 10 {R145R:A -> R160R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {R160R:U -> R145R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {R145R:A -> R161R:G: outward } 0 13 {R161R:G -> R145R:A: outward } 0 14 {R146R:C -> R159R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {R159R:G -> R146R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {R159R:G -> R160R:U: adjacent_5p upward } 0 17 {R160R:U -> R159R:G: adjacent_3p downward } 0 18 {R160R:U -> R161R:G: adjacent_5p } 0 19 {R161R:G -> R160R:U: adjacent_3p } 0 20 {R161R:G -> R162R:G: adjacent_5p upward } 0 21 {R162R:G -> R161R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 R144R:C 0 1 R145R:A 0 2 R146R:C 0 3 R147R:C 0 4 R158R:G 0 5 R159R:G 0 6 R160R:U 0 7 R161R:G 0 [Edges] 0 {R144R:C -> R145R:A: adjacent_5p upward } 0 1 {R145R:A -> R144R:C: adjacent_3p downward } 0 2 {R144R:C -> R161R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R161R:G -> R144R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R145R:A -> R146R:C: adjacent_5p upward } 0 5 {R146R:C -> R145R:A: adjacent_3p downward } 0 6 {R145R:A -> R160R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {R160R:U -> R145R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {R145R:A -> R161R:G: outward } 0 9 {R161R:G -> R145R:A: outward } 0 10 {R146R:C -> R147R:C: adjacent_5p upward } 0 11 {R147R:C -> R146R:C: adjacent_3p downward } 0 12 {R146R:C -> R159R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {R159R:G -> R146R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {R147R:C -> R158R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {R158R:G -> R147R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {R158R:G -> R159R:G: adjacent_5p upward } 0 17 {R159R:G -> R158R:G: adjacent_3p downward } 0 18 {R159R:G -> R160R:U: adjacent_5p upward } 0 19 {R160R:U -> R159R:G: adjacent_3p downward } 0 20 {R160R:U -> R161R:G: adjacent_5p } 0 21 {R161R:G -> R160R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 9R:U 0 1 10R:A 0 2 11R:C 0 3 12R:C 0 4 22R:G 0 5 23R:G 0 6 24R:U 0 7 25R:A 0 [Edges] 0 {9R:U -> 10R:A: adjacent_5p upward } 0 1 {10R:A -> 9R:U: adjacent_3p downward } 0 2 {9R:U -> 25R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {25R:A -> 9R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {10R:A -> 11R:C: adjacent_5p upward } 0 5 {11R:C -> 10R:A: adjacent_3p downward } 0 6 {10R:A -> 24R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {24R:U -> 10R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {11R:C -> 12R:C: adjacent_5p } 0 9 {12R:C -> 11R:C: adjacent_3p } 0 10 {11R:C -> 23R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {23R:G -> 11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {12R:C -> 22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {22R:G -> 12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {22R:G -> 23R:G: adjacent_5p upward } 0 15 {23R:G -> 22R:G: adjacent_3p downward } 0 16 {23R:G -> 24R:U: adjacent_5p upward } 0 17 {24R:U -> 23R:G: adjacent_3p downward } 0 18 {24R:U -> 25R:A: adjacent_5p upward } 0 19 {25R:A -> 24R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:U 0 3 A5R:C 0 4 A20R:G 0 5 A21R:A 0 6 A22R:A 0 7 A23R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A22R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:U -> A5R:C: adjacent_5p } 0 9 {A5R:C -> A4R:U: adjacent_3p } 0 10 {A4R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A21R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A20R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A20R:G -> A21R:A: adjacent_5p upward } 0 15 {A21R:A -> A20R:G: adjacent_3p downward } 0 16 {A21R:A -> A22R:A: adjacent_5p upward } 0 17 {A22R:A -> A21R:A: adjacent_3p downward } 0 18 {A22R:A -> A23R:C: adjacent_5p upward } 0 19 {A23R:C -> A22R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:C 0 2 A8R:C 0 3 A9R:U 0 4 A15R:A 0 5 A16R:G 0 6 A17R:G 0 7 A18R:A 0 [Edges] 0 {A6R:C -> A7R:C: adjacent_5p } 0 1 {A7R:C -> A6R:C: adjacent_3p } 0 2 {A6R:C -> A18R:A: pairing antiparallel cis 78 Ww/Bh } 0 3 {A18R:A -> A6R:C: pairing antiparallel cis 78 Bh/Ww } 0 4 {A7R:C -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:C: adjacent_3p downward } 0 6 {A7R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:C -> A9R:U: adjacent_5p upward } 0 9 {A9R:U -> A8R:C: adjacent_3p downward } 0 10 {A8R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A16R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A15R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A15R:A -> A16R:G: adjacent_5p } 0 15 {A16R:G -> A15R:A: adjacent_3p } 0 16 {A16R:G -> A17R:G: adjacent_5p upward } 0 17 {A17R:G -> A16R:G: adjacent_3p downward } 0 18 {A17R:G -> A18R:A: adjacent_5p } 0 19 {A18R:A -> A17R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:C 0 2 A9R:U 0 3 A10R:G 0 4 A14R:A 0 5 A15R:A 0 6 A16R:G 0 7 A17R:G 0 [Edges] 0 {A7R:C -> A8R:C: adjacent_5p upward } 0 1 {A8R:C -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:C -> A9R:U: adjacent_5p upward } 0 5 {A9R:U -> A8R:C: adjacent_3p downward } 0 6 {A8R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A16R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:U -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:U: adjacent_3p downward } 0 10 {A9R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A15R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A10R:G -> A14R:A: pairing antiparallel trans one_hbond 63 Ss/Wh } 0 13 {A14R:A -> A10R:G: pairing antiparallel trans one_hbond 63 Wh/Ss } 0 14 {A14R:A -> A15R:A: adjacent_5p upward } 0 15 {A15R:A -> A14R:A: adjacent_3p downward } 0 16 {A15R:A -> A16R:G: adjacent_5p } 0 17 {A16R:G -> A15R:A: adjacent_3p } 0 18 {A16R:G -> A17R:G: adjacent_5p upward } 0 19 {A17R:G -> A16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:G 0 2 A3R:C 0 3 A4R:A 0 4 A18R:U 0 5 A19R:G 0 6 A20R:C 0 7 A21R:C 0 [Edges] 0 {A1R:G -> A2R:G: adjacent_5p upward } 0 1 {A2R:G -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:G -> A3R:C: adjacent_5p upward } 0 5 {A3R:C -> A2R:G: adjacent_3p downward } 0 6 {A2R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:C -> A4R:A: adjacent_5p upward } 0 9 {A4R:A -> A3R:C: adjacent_3p downward } 0 10 {A3R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A19R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A18R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A4R:A -> A19R:G: outward } 0 15 {A19R:G -> A4R:A: outward } 0 16 {A18R:U -> A19R:G: adjacent_5p upward } 0 17 {A19R:G -> A18R:U: adjacent_3p downward } 0 18 {A19R:G -> A20R:C: adjacent_5p upward } 0 19 {A20R:C -> A19R:G: adjacent_3p downward } 0 20 {A20R:C -> A21R:C: adjacent_5p upward } 0 21 {A21R:C -> A20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:A 0 3 A5R:G 0 4 A17R:C 0 5 A18R:U 0 6 A19R:G 0 7 A20R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A18R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A4R:A -> A19R:G: outward } 0 13 {A19R:G -> A4R:A: outward } 0 14 {A5R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A17R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A17R:C -> A18R:U: adjacent_5p } 0 17 {A18R:U -> A17R:C: adjacent_3p } 0 18 {A18R:U -> A19R:G: adjacent_5p upward } 0 19 {A19R:G -> A18R:U: adjacent_3p downward } 0 20 {A19R:G -> A20R:C: adjacent_5p upward } 0 21 {A20R:C -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:A 0 2 A5R:G 0 3 A6R:G 0 4 A16R:C 0 5 A17R:C 0 6 A18R:U 0 7 A19R:G 0 [Edges] 0 {A3R:C -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A18R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A19R:G: outward } 0 9 {A19R:G -> A4R:A: outward } 0 10 {A5R:G -> A6R:G: adjacent_5p upward } 0 11 {A6R:G -> A5R:G: adjacent_3p downward } 0 12 {A5R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A16R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A16R:C -> A17R:C: adjacent_5p upward } 0 17 {A17R:C -> A16R:C: adjacent_3p downward } 0 18 {A17R:C -> A18R:U: adjacent_5p } 0 19 {A18R:U -> A17R:C: adjacent_3p } 0 20 {A18R:U -> A19R:G: adjacent_5p upward } 0 21 {A19R:G -> A18R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:G 0 2 A6R:G 0 3 A7R:G 0 4 A15R:C 0 5 A16R:C 0 6 A17R:C 0 7 A18R:U 0 [Edges] 0 {A4R:A -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A18R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:G -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:G: adjacent_3p downward } 0 10 {A6R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A16R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A15R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A15R:C -> A16R:C: adjacent_5p } 0 15 {A16R:C -> A15R:C: adjacent_3p } 0 16 {A16R:C -> A17R:C: adjacent_5p upward } 0 17 {A17R:C -> A16R:C: adjacent_3p downward } 0 18 {A17R:C -> A18R:U: adjacent_5p } 0 19 {A18R:U -> A17R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:G 0 3 A5R:G 0 4 B30R:C 0 5 B31R:C 0 6 B32R:A 0 7 B33R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B33R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B33R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> B32R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B32R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> B31R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B31R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> B32R:A: outward } 0 13 {B32R:A -> A4R:G: outward } 0 14 {A5R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B30R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B30R:C -> B31R:C: adjacent_5p upward } 0 17 {B31R:C -> B30R:C: adjacent_3p downward } 0 18 {B31R:C -> B32R:A: adjacent_5p upward } 0 19 {B32R:A -> B31R:C: adjacent_3p downward } 0 20 {B32R:A -> B33R:C: adjacent_5p upward } 0 21 {B33R:C -> B32R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:G 0 3 A6R:U 0 4 B29R:A 0 5 B30R:C 0 6 B31R:C 0 7 B32R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> B32R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B32R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B31R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B31R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> B32R:A: outward } 0 9 {B32R:A -> A4R:G: outward } 0 10 {A5R:G -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:G: adjacent_3p downward } 0 12 {A5R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B30R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:U -> B29R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B29R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B29R:A -> B30R:C: adjacent_5p upward } 0 17 {B30R:C -> B29R:A: adjacent_3p downward } 0 18 {B30R:C -> B31R:C: adjacent_5p upward } 0 19 {B31R:C -> B30R:C: adjacent_3p downward } 0 20 {B31R:C -> B32R:A: adjacent_5p upward } 0 21 {B32R:A -> B31R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:G 0 2 A6R:U 0 3 A7R:G 0 4 B28R:C 0 5 B29R:A 0 6 B30R:C 0 7 B31R:C 0 [Edges] 0 {A4R:G -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B31R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:G -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B30R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:U -> A7R:G: adjacent_5p } 0 9 {A7R:G -> A6R:U: adjacent_3p } 0 10 {A6R:U -> B29R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B29R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:G -> B28R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B28R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:G -> B29R:A: outward } 0 15 {B29R:A -> A7R:G: outward } 0 16 {B28R:C -> B29R:A: adjacent_5p upward } 0 17 {B29R:A -> B28R:C: adjacent_3p downward } 0 18 {B29R:A -> B30R:C: adjacent_5p upward } 0 19 {B30R:C -> B29R:A: adjacent_3p downward } 0 20 {B30R:C -> B31R:C: adjacent_5p upward } 0 21 {B31R:C -> B30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:U 0 2 A12R:C 0 3 A13R:G 0 4 B23R:C 0 5 B24R:G 0 6 B25R:U 0 7 B26R:C 0 [Edges] 0 {A10R:G -> A11R:U: adjacent_5p upward } 0 1 {A11R:U -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> B26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B26R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:U -> A12R:C: adjacent_5p upward } 0 5 {A12R:C -> A11R:U: adjacent_3p downward } 0 6 {A11R:U -> B25R:U: pairing antiparallel cis XVI Ws/Ww } 0 7 {B25R:U -> A11R:U: pairing antiparallel cis XVI Ww/Ws } 0 8 {A12R:C -> A13R:G: adjacent_5p } 0 9 {A13R:G -> A12R:C: adjacent_3p } 0 10 {A12R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B24R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B23R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A13R:G -> B24R:G: outward } 0 15 {B24R:G -> A13R:G: outward } 0 16 {B23R:C -> B24R:G: adjacent_5p upward } 0 17 {B24R:G -> B23R:C: adjacent_3p downward } 0 18 {B24R:G -> B25R:U: adjacent_5p upward } 0 19 {B25R:U -> B24R:G: adjacent_3p downward } 0 20 {B25R:U -> B26R:C: adjacent_5p upward } 0 21 {B26R:C -> B25R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:C 0 2 A13R:G 0 3 A14R:C 0 4 B22R:G 0 5 B23R:C 0 6 B24R:G 0 7 B25R:U 0 [Edges] 0 {A11R:U -> A12R:C: adjacent_5p upward } 0 1 {A12R:C -> A11R:U: adjacent_3p downward } 0 2 {A11R:U -> B25R:U: pairing antiparallel cis XVI Ws/Ww } 0 3 {B25R:U -> A11R:U: pairing antiparallel cis XVI Ww/Ws } 0 4 {A12R:C -> A13R:G: adjacent_5p } 0 5 {A13R:G -> A12R:C: adjacent_3p } 0 6 {A12R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B24R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:G -> A14R:C: adjacent_5p upward } 0 9 {A14R:C -> A13R:G: adjacent_3p downward } 0 10 {A13R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B23R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:G -> B24R:G: outward } 0 13 {B24R:G -> A13R:G: outward } 0 14 {A14R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B22R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B22R:G -> B23R:C: adjacent_5p upward } 0 17 {B23R:C -> B22R:G: adjacent_3p downward } 0 18 {B23R:C -> B24R:G: adjacent_5p upward } 0 19 {B24R:G -> B23R:C: adjacent_3p downward } 0 20 {B24R:G -> B25R:U: adjacent_5p upward } 0 21 {B25R:U -> B24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A12R:C 0 1 A13R:G 0 2 A14R:C 0 3 A15R:U 0 4 B21R:A 0 5 B22R:G 0 6 B23R:C 0 7 B24R:G 0 [Edges] 0 {A12R:C -> A13R:G: adjacent_5p } 0 1 {A13R:G -> A12R:C: adjacent_3p } 0 2 {A12R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B24R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:G -> A14R:C: adjacent_5p upward } 0 5 {A14R:C -> A13R:G: adjacent_3p downward } 0 6 {A13R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B23R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:G -> B24R:G: outward } 0 9 {B24R:G -> A13R:G: outward } 0 10 {A14R:C -> A15R:U: adjacent_5p upward } 0 11 {A15R:U -> A14R:C: adjacent_3p downward } 0 12 {A14R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B22R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A15R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B21R:A -> A15R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B21R:A -> B22R:G: adjacent_5p upward } 0 17 {B22R:G -> B21R:A: adjacent_3p downward } 0 18 {B22R:G -> B23R:C: adjacent_5p upward } 0 19 {B23R:C -> B22R:G: adjacent_3p downward } 0 20 {B23R:C -> B24R:G: adjacent_5p upward } 0 21 {B24R:G -> B23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C2R:G 0 1 C3R:U 0 2 C4R:G 0 3 C5R:G 0 4 D30R:C 0 5 D31R:C 0 6 D32R:A 0 7 D33R:C 0 [Edges] 0 {C2R:G -> C3R:U: adjacent_5p upward } 0 1 {C3R:U -> C2R:G: adjacent_3p downward } 0 2 {C2R:G -> D33R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D33R:C -> C2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C3R:U -> C4R:G: adjacent_5p upward } 0 5 {C4R:G -> C3R:U: adjacent_3p downward } 0 6 {C3R:U -> D32R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D32R:A -> C3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C4R:G -> C5R:G: adjacent_5p upward } 0 9 {C5R:G -> C4R:G: adjacent_3p downward } 0 10 {C4R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D31R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C4R:G -> D32R:A: outward } 0 13 {D32R:A -> C4R:G: outward } 0 14 {C5R:G -> D30R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D30R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D30R:C -> D31R:C: adjacent_5p upward } 0 17 {D31R:C -> D30R:C: adjacent_3p downward } 0 18 {D31R:C -> D32R:A: adjacent_5p upward } 0 19 {D32R:A -> D31R:C: adjacent_3p downward } 0 20 {D32R:A -> D33R:C: adjacent_5p upward } 0 21 {D33R:C -> D32R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C3R:U 0 1 C4R:G 0 2 C5R:G 0 3 C6R:U 0 4 D29R:A 0 5 D30R:C 0 6 D31R:C 0 7 D32R:A 0 [Edges] 0 {C3R:U -> C4R:G: adjacent_5p upward } 0 1 {C4R:G -> C3R:U: adjacent_3p downward } 0 2 {C3R:U -> D32R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D32R:A -> C3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C4R:G -> C5R:G: adjacent_5p upward } 0 5 {C5R:G -> C4R:G: adjacent_3p downward } 0 6 {C4R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D31R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:G -> D32R:A: outward } 0 9 {D32R:A -> C4R:G: outward } 0 10 {C5R:G -> C6R:U: adjacent_5p upward } 0 11 {C6R:U -> C5R:G: adjacent_3p downward } 0 12 {C5R:G -> D30R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D30R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C6R:U -> D29R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {D29R:A -> C6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {D29R:A -> D30R:C: adjacent_5p upward } 0 17 {D30R:C -> D29R:A: adjacent_3p downward } 0 18 {D30R:C -> D31R:C: adjacent_5p upward } 0 19 {D31R:C -> D30R:C: adjacent_3p downward } 0 20 {D31R:C -> D32R:A: adjacent_5p upward } 0 21 {D32R:A -> D31R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C4R:G 0 1 C5R:G 0 2 C6R:U 0 3 C7R:G 0 4 D28R:C 0 5 D29R:A 0 6 D30R:C 0 7 D31R:C 0 [Edges] 0 {C4R:G -> C5R:G: adjacent_5p upward } 0 1 {C5R:G -> C4R:G: adjacent_3p downward } 0 2 {C4R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D31R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C5R:G -> C6R:U: adjacent_5p upward } 0 5 {C6R:U -> C5R:G: adjacent_3p downward } 0 6 {C5R:G -> D30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D30R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C6R:U -> C7R:G: adjacent_5p upward } 0 9 {C7R:G -> C6R:U: adjacent_3p downward } 0 10 {C6R:U -> D29R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D29R:A -> C6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C7R:G -> D28R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D28R:C -> C7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C7R:G -> D29R:A: outward } 0 15 {D29R:A -> C7R:G: outward } 0 16 {D28R:C -> D29R:A: adjacent_5p } 0 17 {D29R:A -> D28R:C: adjacent_3p } 0 18 {D29R:A -> D30R:C: adjacent_5p upward } 0 19 {D30R:C -> D29R:A: adjacent_3p downward } 0 20 {D30R:C -> D31R:C: adjacent_5p upward } 0 21 {D31R:C -> D30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C10R:G 0 1 C11R:U 0 2 C12R:C 0 3 C13R:G 0 4 D23R:C 0 5 D24R:G 0 6 D25R:U 0 7 D26R:C 0 [Edges] 0 {C10R:G -> C11R:U: adjacent_5p upward } 0 1 {C11R:U -> C10R:G: adjacent_3p downward } 0 2 {C10R:G -> D26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D26R:C -> C10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C11R:U -> C12R:C: adjacent_5p upward } 0 5 {C12R:C -> C11R:U: adjacent_3p downward } 0 6 {C11R:U -> D25R:U: pairing antiparallel cis XVI Ws/Ww } 0 7 {D25R:U -> C11R:U: pairing antiparallel cis XVI Ww/Ws } 0 8 {C12R:C -> C13R:G: adjacent_5p upward } 0 9 {C13R:G -> C12R:C: adjacent_3p downward } 0 10 {C12R:C -> D24R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D24R:G -> C12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C13R:G -> D23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D23R:C -> C13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C13R:G -> D24R:G: outward } 0 15 {D24R:G -> C13R:G: outward } 0 16 {D23R:C -> D24R:G: adjacent_5p upward } 0 17 {D24R:G -> D23R:C: adjacent_3p downward } 0 18 {D24R:G -> D25R:U: adjacent_5p upward } 0 19 {D25R:U -> D24R:G: adjacent_3p downward } 0 20 {D25R:U -> D26R:C: adjacent_5p upward } 0 21 {D26R:C -> D25R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C11R:U 0 1 C12R:C 0 2 C13R:G 0 3 C14R:C 0 4 D22R:G 0 5 D23R:C 0 6 D24R:G 0 7 D25R:U 0 [Edges] 0 {C11R:U -> C12R:C: adjacent_5p upward } 0 1 {C12R:C -> C11R:U: adjacent_3p downward } 0 2 {C11R:U -> D25R:U: pairing antiparallel cis XVI Ws/Ww } 0 3 {D25R:U -> C11R:U: pairing antiparallel cis XVI Ww/Ws } 0 4 {C12R:C -> C13R:G: adjacent_5p upward } 0 5 {C13R:G -> C12R:C: adjacent_3p downward } 0 6 {C12R:C -> D24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D24R:G -> C12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C13R:G -> C14R:C: adjacent_5p upward } 0 9 {C14R:C -> C13R:G: adjacent_3p downward } 0 10 {C13R:G -> D23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D23R:C -> C13R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C13R:G -> D24R:G: outward } 0 13 {D24R:G -> C13R:G: outward } 0 14 {C14R:C -> D22R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D22R:G -> C14R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D22R:G -> D23R:C: adjacent_5p upward } 0 17 {D23R:C -> D22R:G: adjacent_3p downward } 0 18 {D23R:C -> D24R:G: adjacent_5p upward } 0 19 {D24R:G -> D23R:C: adjacent_3p downward } 0 20 {D24R:G -> D25R:U: adjacent_5p upward } 0 21 {D25R:U -> D24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C12R:C 0 1 C13R:G 0 2 C14R:C 0 3 C15R:U 0 4 D21R:A 0 5 D22R:G 0 6 D23R:C 0 7 D24R:G 0 [Edges] 0 {C12R:C -> C13R:G: adjacent_5p upward } 0 1 {C13R:G -> C12R:C: adjacent_3p downward } 0 2 {C12R:C -> D24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D24R:G -> C12R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C13R:G -> C14R:C: adjacent_5p upward } 0 5 {C14R:C -> C13R:G: adjacent_3p downward } 0 6 {C13R:G -> D23R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D23R:C -> C13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C13R:G -> D24R:G: outward } 0 9 {D24R:G -> C13R:G: outward } 0 10 {C14R:C -> C15R:U: adjacent_5p } 0 11 {C15R:U -> C14R:C: adjacent_3p } 0 12 {C14R:C -> D22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D22R:G -> C14R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C15R:U -> D21R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {D21R:A -> C15R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {D21R:A -> D22R:G: adjacent_5p upward } 0 17 {D22R:G -> D21R:A: adjacent_3p downward } 0 18 {D22R:G -> D23R:C: adjacent_5p upward } 0 19 {D23R:C -> D22R:G: adjacent_3p downward } 0 20 {D23R:C -> D24R:G: adjacent_5p upward } 0 21 {D24R:G -> D23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:G 0 3 A5R:G 0 4 C20R:C 0 5 C21R:C 0 6 C22R:A 0 7 C23R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> C23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C23R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> C22R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C22R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> C21R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C21R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> C22R:A: outward } 0 13 {C22R:A -> A4R:G: outward } 0 14 {A5R:G -> C20R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C20R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C20R:C -> C21R:C: adjacent_5p upward } 0 17 {C21R:C -> C20R:C: adjacent_3p downward } 0 18 {C21R:C -> C22R:A: adjacent_5p upward } 0 19 {C22R:A -> C21R:C: adjacent_3p downward } 0 20 {C22R:A -> C23R:C: adjacent_5p upward } 0 21 {C23R:C -> C22R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:G 0 3 A6R:U 0 4 C19R:A 0 5 C20R:C 0 6 C21R:C 0 7 C22R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> C22R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C22R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> C21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C21R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> C22R:A: outward } 0 9 {C22R:A -> A4R:G: outward } 0 10 {A5R:G -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:G: adjacent_3p downward } 0 12 {A5R:G -> C20R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C20R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:U -> C19R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {C19R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {C19R:A -> C20R:C: adjacent_5p upward } 0 17 {C20R:C -> C19R:A: adjacent_3p downward } 0 18 {C20R:C -> C21R:C: adjacent_5p upward } 0 19 {C21R:C -> C20R:C: adjacent_3p downward } 0 20 {C21R:C -> C22R:A: adjacent_5p upward } 0 21 {C22R:A -> C21R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:G 0 2 A6R:U 0 3 A7R:G 0 4 C18R:C 0 5 C19R:A 0 6 C20R:C 0 7 C21R:C 0 [Edges] 0 {A4R:G -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> C21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C21R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:G -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> C20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C20R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:U -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:U: adjacent_3p downward } 0 10 {A6R:U -> C19R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C19R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:G -> C18R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C18R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:G -> C19R:A: outward } 0 15 {C19R:A -> A7R:G: outward } 0 16 {C18R:C -> C19R:A: adjacent_5p upward } 0 17 {C19R:A -> C18R:C: adjacent_3p downward } 0 18 {C19R:A -> C20R:C: adjacent_5p upward } 0 19 {C20R:C -> C19R:A: adjacent_3p downward } 0 20 {C20R:C -> C21R:C: adjacent_5p upward } 0 21 {C21R:C -> C20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:U 0 2 A12R:C 0 3 A13R:G 0 4 C13R:C 0 5 C14R:G 0 6 C15R:U 0 7 C16R:C 0 [Edges] 0 {A10R:G -> A11R:U: adjacent_5p upward } 0 1 {A11R:U -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> C16R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C16R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:U -> A12R:C: adjacent_5p upward } 0 5 {A12R:C -> A11R:U: adjacent_3p downward } 0 6 {A11R:U -> C15R:U: pairing antiparallel cis XVI Ws/Ww } 0 7 {C15R:U -> A11R:U: pairing antiparallel cis XVI Ww/Ws } 0 8 {A12R:C -> A13R:G: adjacent_5p } 0 9 {A13R:G -> A12R:C: adjacent_3p } 0 10 {A12R:C -> C14R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C14R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:G -> C13R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C13R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A13R:G -> C14R:G: outward } 0 15 {C14R:G -> A13R:G: outward } 0 16 {C13R:C -> C14R:G: adjacent_5p upward } 0 17 {C14R:G -> C13R:C: adjacent_3p downward } 0 18 {C14R:G -> C15R:U: adjacent_5p upward } 0 19 {C15R:U -> C14R:G: adjacent_3p downward } 0 20 {C15R:U -> C16R:C: adjacent_5p upward } 0 21 {C16R:C -> C15R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:C 0 2 A13R:G 0 3 A14R:C 0 4 C12R:G 0 5 C13R:C 0 6 C14R:G 0 7 C15R:U 0 [Edges] 0 {A11R:U -> A12R:C: adjacent_5p upward } 0 1 {A12R:C -> A11R:U: adjacent_3p downward } 0 2 {A11R:U -> C15R:U: pairing antiparallel cis XVI Ws/Ww } 0 3 {C15R:U -> A11R:U: pairing antiparallel cis XVI Ww/Ws } 0 4 {A12R:C -> A13R:G: adjacent_5p } 0 5 {A13R:G -> A12R:C: adjacent_3p } 0 6 {A12R:C -> C14R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C14R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:G -> A14R:C: adjacent_5p upward } 0 9 {A14R:C -> A13R:G: adjacent_3p downward } 0 10 {A13R:G -> C13R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C13R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:G -> C14R:G: outward } 0 13 {C14R:G -> A13R:G: outward } 0 14 {A14R:C -> C12R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {C12R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {C12R:G -> C13R:C: adjacent_5p upward } 0 17 {C13R:C -> C12R:G: adjacent_3p downward } 0 18 {C13R:C -> C14R:G: adjacent_5p upward } 0 19 {C14R:G -> C13R:C: adjacent_3p downward } 0 20 {C14R:G -> C15R:U: adjacent_5p upward } 0 21 {C15R:U -> C14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A12R:C 0 1 A13R:G 0 2 A14R:C 0 3 A15R:U 0 4 C11R:A 0 5 C12R:G 0 6 C13R:C 0 7 C14R:G 0 [Edges] 0 {A12R:C -> A13R:G: adjacent_5p } 0 1 {A13R:G -> A12R:C: adjacent_3p } 0 2 {A12R:C -> C14R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C14R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:G -> A14R:C: adjacent_5p upward } 0 5 {A14R:C -> A13R:G: adjacent_3p downward } 0 6 {A13R:G -> C13R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C13R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:G -> C14R:G: outward } 0 9 {C14R:G -> A13R:G: outward } 0 10 {A14R:C -> A15R:U: adjacent_5p upward } 0 11 {A15R:U -> A14R:C: adjacent_3p downward } 0 12 {A14R:C -> C12R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C12R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A15R:U -> C11R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {C11R:A -> A15R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {C11R:A -> C12R:G: adjacent_5p upward } 0 17 {C12R:G -> C11R:A: adjacent_3p downward } 0 18 {C12R:G -> C13R:C: adjacent_5p upward } 0 19 {C13R:C -> C12R:G: adjacent_3p downward } 0 20 {C13R:C -> C14R:G: adjacent_5p upward } 0 21 {C14R:G -> C13R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A13R:G 0 1 A14R:C 0 2 A15R:U 0 3 A16R:C 0 4 C10R:G 0 5 C11R:A 0 6 C12R:G 0 7 C13R:C 0 [Edges] 0 {A13R:G -> A14R:C: adjacent_5p upward } 0 1 {A14R:C -> A13R:G: adjacent_3p downward } 0 2 {A13R:G -> C13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C13R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A14R:C -> A15R:U: adjacent_5p upward } 0 5 {A15R:U -> A14R:C: adjacent_3p downward } 0 6 {A14R:C -> C12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C12R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A15R:U -> A16R:C: adjacent_5p upward } 0 9 {A16R:C -> A15R:U: adjacent_3p downward } 0 10 {A15R:U -> C11R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C11R:A -> A15R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A16R:C -> C10R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C10R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C10R:G -> C11R:A: adjacent_5p upward } 0 15 {C11R:A -> C10R:G: adjacent_3p downward } 0 16 {C11R:A -> C12R:G: adjacent_5p upward } 0 17 {C12R:G -> C11R:A: adjacent_3p downward } 0 18 {C12R:G -> C13R:C: adjacent_5p upward } 0 19 {C13R:C -> C12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:C 0 3 A5R:A 0 4 A30R:U 0 5 A31R:G 0 6 A32R:G 0 7 A33R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p } 0 1 {A3R:U -> A2R:G: adjacent_3p } 0 2 {A2R:G -> A33R:C: pairing antiparallel cis 123 Ww/Ww } 0 3 {A33R:C -> A2R:G: pairing antiparallel cis 123 Ww/Ww } 0 4 {A3R:U -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:U: adjacent_3p downward } 0 6 {A4R:C -> A5R:A: adjacent_5p } 0 7 {A5R:A -> A4R:C: adjacent_3p } 0 8 {A5R:A -> A30R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 9 {A30R:U -> A5R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 10 {A5R:A -> A31R:G: outward } 0 11 {A31R:G -> A5R:A: outward } 0 12 {A30R:U -> A31R:G: adjacent_5p } 0 13 {A31R:G -> A30R:U: adjacent_3p } 0 14 {A31R:G -> A32R:G: adjacent_5p } 0 15 {A32R:G -> A31R:G: adjacent_3p } 0 16 {A32R:G -> A33R:C: adjacent_5p } 0 17 {A33R:C -> A32R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 10 . . 4 . . . 9 . 12 . . 5 . . . 11 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:U 0 2 A7R:C 0 3 A8R:G 0 4 A27R:C 0 5 A28R:G 0 6 A29R:G 0 7 A30R:U 0 [Edges] 0 {A5R:A -> A6R:U: adjacent_5p upward } 0 1 {A6R:U -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> A30R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {A30R:U -> A5R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {A6R:U -> A7R:C: adjacent_5p } 0 5 {A7R:C -> A6R:U: adjacent_3p } 0 6 {A6R:U -> A29R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 7 {A29R:G -> A6R:U: pairing antiparallel cis one_hbond Wh/Ww } 0 8 {A7R:C -> A8R:G: adjacent_5p upward } 0 9 {A8R:G -> A7R:C: adjacent_3p downward } 0 10 {A7R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A28R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:G -> A27R:C: pairing antiparallel cis one_hbond Wh/Ww } 0 13 {A27R:C -> A8R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 14 {A27R:C -> A28R:G: adjacent_5p } 0 15 {A28R:G -> A27R:C: adjacent_3p } 0 16 {A28R:G -> A29R:G: adjacent_5p upward } 0 17 {A29R:G -> A28R:G: adjacent_3p downward } 0 18 {A29R:G -> A30R:U: adjacent_5p upward } 0 19 {A30R:U -> A29R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:U 0 1 A7R:C 0 2 A8R:G 0 3 A9R:U 0 4 A26R:A 0 5 A27R:C 0 6 A28R:G 0 7 A29R:G 0 [Edges] 0 {A6R:U -> A7R:C: adjacent_5p } 0 1 {A7R:C -> A6R:U: adjacent_3p } 0 2 {A6R:U -> A29R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 3 {A29R:G -> A6R:U: pairing antiparallel cis one_hbond Wh/Ww } 0 4 {A7R:C -> A8R:G: adjacent_5p upward } 0 5 {A8R:G -> A7R:C: adjacent_3p downward } 0 6 {A7R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A28R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:G -> A9R:U: adjacent_5p upward } 0 9 {A9R:U -> A8R:G: adjacent_3p downward } 0 10 {A8R:G -> A27R:C: pairing antiparallel cis one_hbond Wh/Ww } 0 11 {A27R:C -> A8R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 12 {A9R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A26R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A26R:A -> A27R:C: adjacent_5p upward } 0 15 {A27R:C -> A26R:A: adjacent_3p downward } 0 16 {A27R:C -> A28R:G: adjacent_5p } 0 17 {A28R:G -> A27R:C: adjacent_3p } 0 18 {A28R:G -> A29R:G: adjacent_5p upward } 0 19 {A29R:G -> A28R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:A 0 3 A5R:U 0 4 A28R:A 0 5 A29R:U 0 6 A30R:C 0 7 A31R:U 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A31R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A31R:U -> A2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A3R:G -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A30R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A29R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A29R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A28R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A28R:A -> A29R:U: adjacent_5p upward } 0 15 {A29R:U -> A28R:A: adjacent_3p downward } 0 16 {A29R:U -> A30R:C: adjacent_5p upward } 0 17 {A30R:C -> A29R:U: adjacent_3p downward } 0 18 {A30R:C -> A31R:U: adjacent_5p upward } 0 19 {A31R:U -> A30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:A 0 2 A5R:U 0 3 A6R:A 0 4 A27R:U 0 5 A28R:A 0 6 A29R:U 0 7 A30R:C 0 [Edges] 0 {A3R:G -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A30R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A29R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A29R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:U -> A6R:A: adjacent_5p upward } 0 9 {A6R:A -> A5R:U: adjacent_3p downward } 0 10 {A5R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A28R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:A -> A27R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A27R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A6R:A -> A28R:A: outward } 0 15 {A28R:A -> A6R:A: outward } 0 16 {A27R:U -> A28R:A: adjacent_5p upward } 0 17 {A28R:A -> A27R:U: adjacent_3p downward } 0 18 {A28R:A -> A29R:U: adjacent_5p upward } 0 19 {A29R:U -> A28R:A: adjacent_3p downward } 0 20 {A29R:U -> A30R:C: adjacent_5p upward } 0 21 {A30R:C -> A29R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:U 0 2 A6R:A 0 3 A7R:C 0 4 A26R:G 0 5 A27R:U 0 6 A28R:A 0 7 A29R:U 0 [Edges] 0 {A4R:A -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> A29R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A29R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:U -> A6R:A: adjacent_5p upward } 0 5 {A6R:A -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A28R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:A -> A7R:C: adjacent_5p upward } 0 9 {A7R:C -> A6R:A: adjacent_3p downward } 0 10 {A6R:A -> A27R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A27R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:A -> A28R:A: outward } 0 13 {A28R:A -> A6R:A: outward } 0 14 {A7R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A26R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A26R:G -> A27R:U: adjacent_5p upward } 0 17 {A27R:U -> A26R:G: adjacent_3p downward } 0 18 {A27R:U -> A28R:A: adjacent_5p upward } 0 19 {A28R:A -> A27R:U: adjacent_3p downward } 0 20 {A28R:A -> A29R:U: adjacent_5p upward } 0 21 {A29R:U -> A28R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:A 0 2 A7R:C 0 3 A8R:C 0 4 A25R:G 0 5 A26R:G 0 6 A27R:U 0 7 A28R:A 0 [Edges] 0 {A5R:U -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:U: adjacent_3p downward } 0 2 {A5R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A28R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:A -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> A27R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A27R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:A -> A28R:A: outward } 0 9 {A28R:A -> A6R:A: outward } 0 10 {A7R:C -> A8R:C: adjacent_5p upward } 0 11 {A8R:C -> A7R:C: adjacent_3p downward } 0 12 {A7R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A26R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A8R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A25R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A25R:G -> A26R:G: adjacent_5p upward } 0 17 {A26R:G -> A25R:G: adjacent_3p downward } 0 18 {A26R:G -> A27R:U: adjacent_5p upward } 0 19 {A27R:U -> A26R:G: adjacent_3p downward } 0 20 {A27R:U -> A28R:A: adjacent_5p upward } 0 21 {A28R:A -> A27R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:C 0 2 A8R:C 0 3 A9R:A 0 4 A24R:U 0 5 A25R:G 0 6 A26R:G 0 7 A27R:U 0 [Edges] 0 {A6R:A -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> A27R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A27R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:C -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:C: adjacent_3p downward } 0 6 {A7R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A26R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:C -> A9R:A: adjacent_5p upward } 0 9 {A9R:A -> A8R:C: adjacent_3p downward } 0 10 {A8R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A25R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A24R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A9R:A -> A25R:G: outward } 0 15 {A25R:G -> A9R:A: outward } 0 16 {A24R:U -> A25R:G: adjacent_5p } 0 17 {A25R:G -> A24R:U: adjacent_3p } 0 18 {A25R:G -> A26R:G: adjacent_5p upward } 0 19 {A26R:G -> A25R:G: adjacent_3p downward } 0 20 {A26R:G -> A27R:U: adjacent_5p upward } 0 21 {A27R:U -> A26R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:C 0 2 A9R:A 0 3 A10R:U 0 4 A23R:G 0 5 A24R:U 0 6 A25R:G 0 7 A26R:G 0 [Edges] 0 {A7R:C -> A8R:C: adjacent_5p upward } 0 1 {A8R:C -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A26R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:C -> A9R:A: adjacent_5p upward } 0 5 {A9R:A -> A8R:C: adjacent_3p downward } 0 6 {A8R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A25R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:A -> A10R:U: adjacent_5p upward } 0 9 {A10R:U -> A9R:A: adjacent_3p downward } 0 10 {A9R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A24R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:A -> A25R:G: outward } 0 13 {A25R:G -> A9R:A: outward } 0 14 {A10R:U -> A23R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A23R:G -> A10R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A23R:G -> A24R:U: adjacent_5p upward } 0 17 {A24R:U -> A23R:G: adjacent_3p downward } 0 18 {A24R:U -> A25R:G: adjacent_5p } 0 19 {A25R:G -> A24R:U: adjacent_3p } 0 20 {A25R:G -> A26R:G: adjacent_5p upward } 0 21 {A26R:G -> A25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:A 0 2 A10R:U 0 3 A11R:G 0 4 A22R:C 0 5 A23R:G 0 6 A24R:U 0 7 A25R:G 0 [Edges] 0 {A8R:C -> A9R:A: adjacent_5p upward } 0 1 {A9R:A -> A8R:C: adjacent_3p downward } 0 2 {A8R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:A -> A10R:U: adjacent_5p upward } 0 5 {A10R:U -> A9R:A: adjacent_3p downward } 0 6 {A9R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A24R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:A -> A25R:G: outward } 0 9 {A25R:G -> A9R:A: outward } 0 10 {A10R:U -> A11R:G: adjacent_5p } 0 11 {A11R:G -> A10R:U: adjacent_3p } 0 12 {A10R:U -> A23R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A23R:G -> A10R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A11R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A22R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A11R:G -> A23R:G: outward } 0 17 {A23R:G -> A11R:G: outward } 0 18 {A22R:C -> A23R:G: adjacent_5p } 0 19 {A23R:G -> A22R:C: adjacent_3p } 0 20 {A23R:G -> A24R:U: adjacent_5p upward } 0 21 {A24R:U -> A23R:G: adjacent_3p downward } 0 22 {A24R:U -> A25R:G: adjacent_5p } 0 23 {A25R:G -> A24R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A9R:A 0 1 A10R:U 0 2 A11R:G 0 3 A12R:U 0 4 A21R:A 0 5 A22R:C 0 6 A23R:G 0 7 A24R:U 0 [Edges] 0 {A9R:A -> A10R:U: adjacent_5p upward } 0 1 {A10R:U -> A9R:A: adjacent_3p downward } 0 2 {A9R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A24R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A10R:U -> A11R:G: adjacent_5p } 0 5 {A11R:G -> A10R:U: adjacent_3p } 0 6 {A10R:U -> A23R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A23R:G -> A10R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A11R:G -> A12R:U: adjacent_5p upward } 0 9 {A12R:U -> A11R:G: adjacent_3p downward } 0 10 {A11R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A22R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A11R:G -> A23R:G: outward } 0 13 {A23R:G -> A11R:G: outward } 0 14 {A12R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A21R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A21R:A -> A22R:C: adjacent_5p upward } 0 17 {A22R:C -> A21R:A: adjacent_3p downward } 0 18 {A22R:C -> A23R:G: adjacent_5p } 0 19 {A23R:G -> A22R:C: adjacent_3p } 0 20 {A23R:G -> A24R:U: adjacent_5p upward } 0 21 {A24R:U -> A23R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:U 0 1 A11R:G 0 2 A12R:U 0 3 A13R:U 0 4 A20R:A 0 5 A21R:A 0 6 A22R:C 0 7 A23R:G 0 [Edges] 0 {A10R:U -> A11R:G: adjacent_5p } 0 1 {A11R:G -> A10R:U: adjacent_3p } 0 2 {A10R:U -> A23R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A23R:G -> A10R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A11R:G -> A12R:U: adjacent_5p upward } 0 5 {A12R:U -> A11R:G: adjacent_3p downward } 0 6 {A11R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:G -> A23R:G: outward } 0 9 {A23R:G -> A11R:G: outward } 0 10 {A12R:U -> A13R:U: adjacent_5p } 0 11 {A13R:U -> A12R:U: adjacent_3p } 0 12 {A12R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A21R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A13R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A20R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A20R:A -> A21R:A: adjacent_5p upward } 0 17 {A21R:A -> A20R:A: adjacent_3p downward } 0 18 {A21R:A -> A22R:C: adjacent_5p upward } 0 19 {A22R:C -> A21R:A: adjacent_3p downward } 0 20 {A22R:C -> A23R:G: adjacent_5p } 0 21 {A23R:G -> A22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A11R:G 0 1 A12R:U 0 2 A13R:U 0 3 A14R:C 0 4 A19R:G 0 5 A20R:A 0 6 A21R:A 0 7 A22R:C 0 [Edges] 0 {A11R:G -> A12R:U: adjacent_5p upward } 0 1 {A12R:U -> A11R:G: adjacent_3p downward } 0 2 {A11R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:U -> A13R:U: adjacent_5p } 0 5 {A13R:U -> A12R:U: adjacent_3p } 0 6 {A12R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A21R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A13R:U -> A14R:C: adjacent_5p } 0 9 {A14R:C -> A13R:U: adjacent_3p } 0 10 {A13R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A20R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A14R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A19R:G -> A20R:A: adjacent_5p } 0 15 {A20R:A -> A19R:G: adjacent_3p } 0 16 {A20R:A -> A21R:A: adjacent_5p upward } 0 17 {A21R:A -> A20R:A: adjacent_3p downward } 0 18 {A21R:A -> A22R:C: adjacent_5p upward } 0 19 {A22R:C -> A21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:C 0 4 B8R:G 0 5 B9R:C 0 6 B10R:G 0 7 B11R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p downward } 0 1 {A3R:C -> A2R:G: adjacent_3p upward } 0 2 {A2R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B11R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p downward } 0 5 {A4R:G -> A3R:C: adjacent_3p upward } 0 6 {A3R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B10R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:C: adjacent_5p downward } 0 9 {A5R:C -> A4R:G: adjacent_3p upward } 0 10 {A4R:G -> B9R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B9R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:C -> B8R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B8R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B8R:G -> B9R:C: adjacent_5p downward } 0 15 {B9R:C -> B8R:G: adjacent_3p upward } 0 16 {B9R:C -> B10R:G: adjacent_5p } 0 17 {B10R:G -> B9R:C: adjacent_3p } 0 18 {B10R:G -> B11R:C: adjacent_5p downward } 0 19 {B11R:C -> B10R:G: adjacent_3p upward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 E2R:C 0 1 E3R:G 0 2 E4R:G 0 3 E5R:A 0 4 H68R:U 0 5 H69R:C 0 6 H70R:C 0 7 H71R:G 0 [Edges] 0 {E2R:C -> E3R:G: adjacent_5p upward } 0 1 {E3R:G -> E2R:C: adjacent_3p downward } 0 2 {E2R:C -> H71R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {H71R:G -> E2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E3R:G -> E4R:G: adjacent_5p upward } 0 5 {E4R:G -> E3R:G: adjacent_3p downward } 0 6 {E3R:G -> H70R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {H70R:C -> E3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E3R:G -> H71R:G: outward } 0 9 {H71R:G -> E3R:G: outward } 0 10 {E4R:G -> E5R:A: adjacent_5p upward } 0 11 {E5R:A -> E4R:G: adjacent_3p downward } 0 12 {E4R:G -> H69R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {H69R:C -> E4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {E5R:A -> H68R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {H68R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {H68R:U -> H69R:C: adjacent_5p upward } 0 17 {H69R:C -> H68R:U: adjacent_3p downward } 0 18 {H69R:C -> H70R:C: adjacent_5p upward } 0 19 {H70R:C -> H69R:C: adjacent_3p downward } 0 20 {H70R:C -> H71R:G: adjacent_5p } 0 21 {H71R:G -> H70R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 E3R:G 0 1 E4R:G 0 2 E5R:A 0 3 E6R:U 0 4 H67R:A 0 5 H68R:U 0 6 H69R:C 0 7 H70R:C 0 [Edges] 0 {E3R:G -> E4R:G: adjacent_5p upward } 0 1 {E4R:G -> E3R:G: adjacent_3p downward } 0 2 {E3R:G -> H70R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {H70R:C -> E3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E4R:G -> E5R:A: adjacent_5p upward } 0 5 {E5R:A -> E4R:G: adjacent_3p downward } 0 6 {E4R:G -> H69R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {H69R:C -> E4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E5R:A -> E6R:U: adjacent_5p upward } 0 9 {E6R:U -> E5R:A: adjacent_3p downward } 0 10 {E5R:A -> H68R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {H68R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {E6R:U -> H67R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {H67R:A -> E6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {H67R:A -> H68R:U: adjacent_5p upward } 0 15 {H68R:U -> H67R:A: adjacent_3p downward } 0 16 {H68R:U -> H69R:C: adjacent_5p upward } 0 17 {H69R:C -> H68R:U: adjacent_3p downward } 0 18 {H69R:C -> H70R:C: adjacent_5p upward } 0 19 {H70R:C -> H69R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E4R:G 0 1 E5R:A 0 2 E6R:U 0 3 E7R:C 0 4 H66R:G 0 5 H67R:A 0 6 H68R:U 0 7 H69R:C 0 [Edges] 0 {E4R:G -> E5R:A: adjacent_5p upward } 0 1 {E5R:A -> E4R:G: adjacent_3p downward } 0 2 {E4R:G -> H69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {H69R:C -> E4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E5R:A -> E6R:U: adjacent_5p upward } 0 5 {E6R:U -> E5R:A: adjacent_3p downward } 0 6 {E5R:A -> H68R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {H68R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {E6R:U -> E7R:C: adjacent_5p upward } 0 9 {E7R:C -> E6R:U: adjacent_3p downward } 0 10 {E6R:U -> H67R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {H67R:A -> E6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {E7R:C -> H66R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {H66R:G -> E7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {H66R:G -> H67R:A: adjacent_5p upward } 0 15 {H67R:A -> H66R:G: adjacent_3p downward } 0 16 {H67R:A -> H68R:U: adjacent_5p upward } 0 17 {H68R:U -> H67R:A: adjacent_3p downward } 0 18 {H68R:U -> H69R:C: adjacent_5p upward } 0 19 {H69R:C -> H68R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E5R:A 0 1 E6R:U 0 2 E7R:C 0 3 E8R:C 0 4 H65R:G 0 5 H66R:G 0 6 H67R:A 0 7 H68R:U 0 [Edges] 0 {E5R:A -> E6R:U: adjacent_5p upward } 0 1 {E6R:U -> E5R:A: adjacent_3p downward } 0 2 {E5R:A -> H68R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {H68R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {E6R:U -> E7R:C: adjacent_5p upward } 0 5 {E7R:C -> E6R:U: adjacent_3p downward } 0 6 {E6R:U -> H67R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {H67R:A -> E6R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {E7R:C -> E8R:C: adjacent_5p upward } 0 9 {E8R:C -> E7R:C: adjacent_3p downward } 0 10 {E7R:C -> H66R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {H66R:G -> E7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {E8R:C -> H65R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {H65R:G -> E8R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {H65R:G -> H66R:G: adjacent_5p upward } 0 15 {H66R:G -> H65R:G: adjacent_3p downward } 0 16 {H66R:G -> H67R:A: adjacent_5p upward } 0 17 {H67R:A -> H66R:G: adjacent_3p downward } 0 18 {H67R:A -> H68R:U: adjacent_5p upward } 0 19 {H68R:U -> H67R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E6R:U 0 1 E7R:C 0 2 E8R:C 0 3 E9R:G 0 4 H64R:C 0 5 H65R:G 0 6 H66R:G 0 7 H67R:A 0 [Edges] 0 {E6R:U -> E7R:C: adjacent_5p upward } 0 1 {E7R:C -> E6R:U: adjacent_3p downward } 0 2 {E6R:U -> H67R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {H67R:A -> E6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {E7R:C -> E8R:C: adjacent_5p upward } 0 5 {E8R:C -> E7R:C: adjacent_3p downward } 0 6 {E7R:C -> H66R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {H66R:G -> E7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E8R:C -> E9R:G: adjacent_5p upward } 0 9 {E9R:G -> E8R:C: adjacent_3p downward } 0 10 {E8R:C -> H65R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {H65R:G -> E8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {E9R:G -> H64R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {H64R:C -> E9R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {E9R:G -> H65R:G: outward } 0 15 {H65R:G -> E9R:G: outward } 0 16 {H64R:C -> H65R:G: adjacent_5p upward } 0 17 {H65R:G -> H64R:C: adjacent_3p downward } 0 18 {H65R:G -> H66R:G: adjacent_5p upward } 0 19 {H66R:G -> H65R:G: adjacent_3p downward } 0 20 {H66R:G -> H67R:A: adjacent_5p upward } 0 21 {H67R:A -> H66R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 F2R:C 0 1 F3R:G 0 2 F4R:G 0 3 F5R:A 0 4 I68R:U 0 5 I69R:C 0 6 I70R:C 0 7 I71R:G 0 [Edges] 0 {F2R:C -> F3R:G: adjacent_5p upward } 0 1 {F3R:G -> F2R:C: adjacent_3p downward } 0 2 {F2R:C -> I71R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {I71R:G -> F2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {F3R:G -> F4R:G: adjacent_5p upward } 0 5 {F4R:G -> F3R:G: adjacent_3p downward } 0 6 {F3R:G -> I70R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {I70R:C -> F3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {F3R:G -> I71R:G: outward } 0 9 {I71R:G -> F3R:G: outward } 0 10 {F4R:G -> F5R:A: adjacent_5p upward } 0 11 {F5R:A -> F4R:G: adjacent_3p downward } 0 12 {F4R:G -> I69R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {I69R:C -> F4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {F5R:A -> I68R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {I68R:U -> F5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {I68R:U -> I69R:C: adjacent_5p upward } 0 17 {I69R:C -> I68R:U: adjacent_3p downward } 0 18 {I69R:C -> I70R:C: adjacent_5p upward } 0 19 {I70R:C -> I69R:C: adjacent_3p downward } 0 20 {I70R:C -> I71R:G: adjacent_5p } 0 21 {I71R:G -> I70R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 F3R:G 0 1 F4R:G 0 2 F5R:A 0 3 F6R:C 0 4 I67R:A 0 5 I68R:U 0 6 I69R:C 0 7 I70R:C 0 [Edges] 0 {F3R:G -> F4R:G: adjacent_5p upward } 0 1 {F4R:G -> F3R:G: adjacent_3p downward } 0 2 {F3R:G -> I70R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {I70R:C -> F3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {F4R:G -> F5R:A: adjacent_5p upward } 0 5 {F5R:A -> F4R:G: adjacent_3p downward } 0 6 {F4R:G -> I69R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {I69R:C -> F4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {F5R:A -> F6R:C: adjacent_5p upward } 0 9 {F6R:C -> F5R:A: adjacent_3p downward } 0 10 {F5R:A -> I68R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {I68R:U -> F5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {F6R:C -> I67R:A: pairing antiparallel cis one_hbond Ws/Bs } 0 13 {I67R:A -> F6R:C: pairing antiparallel cis one_hbond Bs/Ws } 0 14 {I67R:A -> I68R:U: adjacent_5p upward } 0 15 {I68R:U -> I67R:A: adjacent_3p downward } 0 16 {I68R:U -> I69R:C: adjacent_5p upward } 0 17 {I69R:C -> I68R:U: adjacent_3p downward } 0 18 {I69R:C -> I70R:C: adjacent_5p upward } 0 19 {I70R:C -> I69R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 F4R:G 0 1 F5R:A 0 2 F6R:C 0 3 F7R:C 0 4 I66R:G 0 5 I67R:A 0 6 I68R:U 0 7 I69R:C 0 [Edges] 0 {F4R:G -> F5R:A: adjacent_5p upward } 0 1 {F5R:A -> F4R:G: adjacent_3p downward } 0 2 {F4R:G -> I69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {I69R:C -> F4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {F5R:A -> F6R:C: adjacent_5p upward } 0 5 {F6R:C -> F5R:A: adjacent_3p downward } 0 6 {F5R:A -> I68R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {I68R:U -> F5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {F6R:C -> F7R:C: adjacent_5p upward } 0 9 {F7R:C -> F6R:C: adjacent_3p downward } 0 10 {F6R:C -> I67R:A: pairing antiparallel cis one_hbond Ws/Bs } 0 11 {I67R:A -> F6R:C: pairing antiparallel cis one_hbond Bs/Ws } 0 12 {F7R:C -> I66R:G: pairing antiparallel cis Ww/Ww } 0 13 {I66R:G -> F7R:C: pairing antiparallel cis Ww/Ww } 0 14 {I66R:G -> I67R:A: adjacent_5p upward } 0 15 {I67R:A -> I66R:G: adjacent_3p downward } 0 16 {I67R:A -> I68R:U: adjacent_5p upward } 0 17 {I68R:U -> I67R:A: adjacent_3p downward } 0 18 {I68R:U -> I69R:C: adjacent_5p upward } 0 19 {I69R:C -> I68R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 F5R:A 0 1 F6R:C 0 2 F7R:C 0 3 F8R:C 0 4 I65R:G 0 5 I66R:G 0 6 I67R:A 0 7 I68R:U 0 [Edges] 0 {F5R:A -> F6R:C: adjacent_5p upward } 0 1 {F6R:C -> F5R:A: adjacent_3p downward } 0 2 {F5R:A -> I68R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {I68R:U -> F5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {F6R:C -> F7R:C: adjacent_5p upward } 0 5 {F7R:C -> F6R:C: adjacent_3p downward } 0 6 {F6R:C -> I67R:A: pairing antiparallel cis one_hbond Ws/Bs } 0 7 {I67R:A -> F6R:C: pairing antiparallel cis one_hbond Bs/Ws } 0 8 {F7R:C -> F8R:C: adjacent_5p upward } 0 9 {F8R:C -> F7R:C: adjacent_3p downward } 0 10 {F7R:C -> I66R:G: pairing antiparallel cis Ww/Ww } 0 11 {I66R:G -> F7R:C: pairing antiparallel cis Ww/Ww } 0 12 {F8R:C -> I65R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {I65R:G -> F8R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {I65R:G -> I66R:G: adjacent_5p upward } 0 15 {I66R:G -> I65R:G: adjacent_3p downward } 0 16 {I66R:G -> I67R:A: adjacent_5p upward } 0 17 {I67R:A -> I66R:G: adjacent_3p downward } 0 18 {I67R:A -> I68R:U: adjacent_5p upward } 0 19 {I68R:U -> I67R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 F6R:C 0 1 F7R:C 0 2 F8R:C 0 3 F9R:G 0 4 I64R:C 0 5 I65R:G 0 6 I66R:G 0 7 I67R:A 0 [Edges] 0 {F6R:C -> F7R:C: adjacent_5p upward } 0 1 {F7R:C -> F6R:C: adjacent_3p downward } 0 2 {F6R:C -> I67R:A: pairing antiparallel cis one_hbond Ws/Bs } 0 3 {I67R:A -> F6R:C: pairing antiparallel cis one_hbond Bs/Ws } 0 4 {F7R:C -> F8R:C: adjacent_5p upward } 0 5 {F8R:C -> F7R:C: adjacent_3p downward } 0 6 {F7R:C -> I66R:G: pairing antiparallel cis Ww/Ww } 0 7 {I66R:G -> F7R:C: pairing antiparallel cis Ww/Ww } 0 8 {F8R:C -> F9R:G: adjacent_5p upward } 0 9 {F9R:G -> F8R:C: adjacent_3p downward } 0 10 {F8R:C -> I65R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {I65R:G -> F8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {F9R:G -> I64R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {I64R:C -> F9R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {F9R:G -> I65R:G: outward } 0 15 {I65R:G -> F9R:G: outward } 0 16 {I64R:C -> I65R:G: adjacent_5p upward } 0 17 {I65R:G -> I64R:C: adjacent_3p downward } 0 18 {I65R:G -> I66R:G: adjacent_5p upward } 0 19 {I66R:G -> I65R:G: adjacent_3p downward } 0 20 {I66R:G -> I67R:A: adjacent_5p upward } 0 21 {I67R:A -> I66R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 G3R:C 0 1 G4R:G 0 2 G5R:G 0 3 G6R:A 0 4 J67R:U 0 5 J68R:C 0 6 J69R:C 0 7 J70R:G 0 [Edges] 0 {G3R:C -> G4R:G: adjacent_5p upward } 0 1 {G4R:G -> G3R:C: adjacent_3p downward } 0 2 {G3R:C -> J70R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {J70R:G -> G3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {G4R:G -> G5R:G: adjacent_5p upward } 0 5 {G5R:G -> G4R:G: adjacent_3p downward } 0 6 {G4R:G -> J69R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {J69R:C -> G4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {G4R:G -> J70R:G: outward } 0 9 {J70R:G -> G4R:G: outward } 0 10 {G5R:G -> G6R:A: adjacent_5p upward } 0 11 {G6R:A -> G5R:G: adjacent_3p downward } 0 12 {G5R:G -> J68R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {J68R:C -> G5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {G6R:A -> J67R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {J67R:U -> G6R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {J67R:U -> J68R:C: adjacent_5p upward } 0 17 {J68R:C -> J67R:U: adjacent_3p downward } 0 18 {J68R:C -> J69R:C: adjacent_5p upward } 0 19 {J69R:C -> J68R:C: adjacent_3p downward } 0 20 {J69R:C -> J70R:G: adjacent_5p } 0 21 {J70R:G -> J69R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 G4R:G 0 1 G5R:G 0 2 G6R:A 0 3 G7R:U 0 4 J66R:A 0 5 J67R:U 0 6 J68R:C 0 7 J69R:C 0 [Edges] 0 {G4R:G -> G5R:G: adjacent_5p upward } 0 1 {G5R:G -> G4R:G: adjacent_3p downward } 0 2 {G4R:G -> J69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {J69R:C -> G4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {G5R:G -> G6R:A: adjacent_5p upward } 0 5 {G6R:A -> G5R:G: adjacent_3p downward } 0 6 {G5R:G -> J68R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {J68R:C -> G5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {G6R:A -> G7R:U: adjacent_5p upward } 0 9 {G7R:U -> G6R:A: adjacent_3p downward } 0 10 {G6R:A -> J67R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {J67R:U -> G6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {G7R:U -> J66R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {J66R:A -> G7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {J66R:A -> J67R:U: adjacent_5p upward } 0 15 {J67R:U -> J66R:A: adjacent_3p downward } 0 16 {J67R:U -> J68R:C: adjacent_5p upward } 0 17 {J68R:C -> J67R:U: adjacent_3p downward } 0 18 {J68R:C -> J69R:C: adjacent_5p upward } 0 19 {J69R:C -> J68R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 G5R:G 0 1 G6R:A 0 2 G7R:U 0 3 G8R:C 0 4 J65R:G 0 5 J66R:A 0 6 J67R:U 0 7 J68R:C 0 [Edges] 0 {G5R:G -> G6R:A: adjacent_5p upward } 0 1 {G6R:A -> G5R:G: adjacent_3p downward } 0 2 {G5R:G -> J68R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {J68R:C -> G5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {G6R:A -> G7R:U: adjacent_5p upward } 0 5 {G7R:U -> G6R:A: adjacent_3p downward } 0 6 {G6R:A -> J67R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {J67R:U -> G6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {G7R:U -> G8R:C: adjacent_5p upward } 0 9 {G8R:C -> G7R:U: adjacent_3p downward } 0 10 {G7R:U -> J66R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {J66R:A -> G7R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {G8R:C -> J65R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {J65R:G -> G8R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {J65R:G -> J66R:A: adjacent_5p upward } 0 15 {J66R:A -> J65R:G: adjacent_3p downward } 0 16 {J66R:A -> J67R:U: adjacent_5p upward } 0 17 {J67R:U -> J66R:A: adjacent_3p downward } 0 18 {J67R:U -> J68R:C: adjacent_5p upward } 0 19 {J68R:C -> J67R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 G6R:A 0 1 G7R:U 0 2 G8R:C 0 3 G9R:C 0 4 J64R:G 0 5 J65R:G 0 6 J66R:A 0 7 J67R:U 0 [Edges] 0 {G6R:A -> G7R:U: adjacent_5p upward } 0 1 {G7R:U -> G6R:A: adjacent_3p downward } 0 2 {G6R:A -> J67R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {J67R:U -> G6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {G7R:U -> G8R:C: adjacent_5p upward } 0 5 {G8R:C -> G7R:U: adjacent_3p downward } 0 6 {G7R:U -> J66R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {J66R:A -> G7R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {G8R:C -> G9R:C: adjacent_5p upward } 0 9 {G9R:C -> G8R:C: adjacent_3p downward } 0 10 {G8R:C -> J65R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {J65R:G -> G8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {G9R:C -> J64R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {J64R:G -> G9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {J64R:G -> J65R:G: adjacent_5p upward } 0 15 {J65R:G -> J64R:G: adjacent_3p downward } 0 16 {J65R:G -> J66R:A: adjacent_5p upward } 0 17 {J66R:A -> J65R:G: adjacent_3p downward } 0 18 {J66R:A -> J67R:U: adjacent_5p upward } 0 19 {J67R:U -> J66R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 G7R:U 0 1 G8R:C 0 2 G9R:C 0 3 G10R:G 0 4 J63R:C 0 5 J64R:G 0 6 J65R:G 0 7 J66R:A 0 [Edges] 0 {G7R:U -> G8R:C: adjacent_5p upward } 0 1 {G8R:C -> G7R:U: adjacent_3p downward } 0 2 {G7R:U -> J66R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {J66R:A -> G7R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {G8R:C -> G9R:C: adjacent_5p upward } 0 5 {G9R:C -> G8R:C: adjacent_3p downward } 0 6 {G8R:C -> J65R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {J65R:G -> G8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {G9R:C -> G10R:G: adjacent_5p } 0 9 {G10R:G -> G9R:C: adjacent_3p } 0 10 {G9R:C -> J64R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {J64R:G -> G9R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {G10R:G -> J63R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {J63R:C -> G10R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {G10R:G -> J64R:G: outward } 0 15 {J64R:G -> G10R:G: outward } 0 16 {J63R:C -> J64R:G: adjacent_5p upward } 0 17 {J64R:G -> J63R:C: adjacent_3p downward } 0 18 {J64R:G -> J65R:G: adjacent_5p upward } 0 19 {J65R:G -> J64R:G: adjacent_3p downward } 0 20 {J65R:G -> J66R:A: adjacent_5p upward } 0 21 {J66R:A -> J65R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 G8R:C 0 1 G9R:C 0 2 G10R:G 0 3 G11R:C 0 4 J62R:G 0 5 J63R:C 0 6 J64R:G 0 7 J65R:G 0 [Edges] 0 {G8R:C -> G9R:C: adjacent_5p upward } 0 1 {G9R:C -> G8R:C: adjacent_3p downward } 0 2 {G8R:C -> J65R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {J65R:G -> G8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {G9R:C -> G10R:G: adjacent_5p } 0 5 {G10R:G -> G9R:C: adjacent_3p } 0 6 {G9R:C -> J64R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {J64R:G -> G9R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {G10R:G -> G11R:C: adjacent_5p upward } 0 9 {G11R:C -> G10R:G: adjacent_3p downward } 0 10 {G10R:G -> J63R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {J63R:C -> G10R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {G10R:G -> J64R:G: outward } 0 13 {J64R:G -> G10R:G: outward } 0 14 {G11R:C -> J62R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {J62R:G -> G11R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {J62R:G -> J63R:C: adjacent_5p upward } 0 17 {J63R:C -> J62R:G: adjacent_3p downward } 0 18 {J63R:C -> J64R:G: adjacent_5p upward } 0 19 {J64R:G -> J63R:C: adjacent_3p downward } 0 20 {J64R:G -> J65R:G: adjacent_5p upward } 0 21 {J65R:G -> J64R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:U 0 2 A8R:G 0 3 A9R:A 0 4 A22R:C 0 5 A23R:A 0 6 A24R:G 0 7 A25R:C 0 [Edges] 0 {A6R:G -> A7R:U: adjacent_5p upward } 0 1 {A7R:U -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:U -> A8R:G: adjacent_5p upward } 0 5 {A8R:G -> A7R:U: adjacent_3p downward } 0 6 {A7R:U -> A24R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A24R:G -> A7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A8R:G -> A9R:A: adjacent_5p } 0 9 {A9R:A -> A8R:G: adjacent_3p } 0 10 {A8R:G -> A23R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {A23R:A -> A8R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {A9R:A -> A22R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 13 {A22R:C -> A9R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 14 {A9R:A -> A23R:A: outward } 0 15 {A23R:A -> A9R:A: outward } 0 16 {A22R:C -> A23R:A: adjacent_5p } 0 17 {A23R:A -> A22R:C: adjacent_3p } 0 18 {A23R:A -> A24R:G: adjacent_5p upward } 0 19 {A24R:G -> A23R:A: adjacent_3p downward } 0 20 {A24R:G -> A25R:C: adjacent_5p upward } 0 21 {A25R:C -> A24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:U 0 1 A8R:G 0 2 A9R:A 0 3 A10R:C 0 4 A21R:G 0 5 A22R:C 0 6 A23R:A 0 7 A24R:G 0 [Edges] 0 {A7R:U -> A8R:G: adjacent_5p upward } 0 1 {A8R:G -> A7R:U: adjacent_3p downward } 0 2 {A7R:U -> A24R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A24R:G -> A7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A8R:G -> A9R:A: adjacent_5p } 0 5 {A9R:A -> A8R:G: adjacent_3p } 0 6 {A8R:G -> A23R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {A23R:A -> A8R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {A9R:A -> A10R:C: adjacent_5p upward } 0 9 {A10R:C -> A9R:A: adjacent_3p downward } 0 10 {A9R:A -> A22R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 11 {A22R:C -> A9R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 12 {A9R:A -> A23R:A: outward } 0 13 {A23R:A -> A9R:A: outward } 0 14 {A10R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A21R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A21R:G -> A22R:C: adjacent_5p upward } 0 17 {A22R:C -> A21R:G: adjacent_3p downward } 0 18 {A22R:C -> A23R:A: adjacent_5p } 0 19 {A23R:A -> A22R:C: adjacent_3p } 0 20 {A23R:A -> A24R:G: adjacent_5p upward } 0 21 {A24R:G -> A23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:A 0 2 A10R:C 0 3 A11R:G 0 4 A20R:C 0 5 A21R:G 0 6 A22R:C 0 7 A23R:A 0 [Edges] 0 {A8R:G -> A9R:A: adjacent_5p } 0 1 {A9R:A -> A8R:G: adjacent_3p } 0 2 {A8R:G -> A23R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {A23R:A -> A8R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {A9R:A -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:A: adjacent_3p downward } 0 6 {A9R:A -> A22R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 7 {A22R:C -> A9R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 8 {A9R:A -> A23R:A: outward } 0 9 {A23R:A -> A9R:A: outward } 0 10 {A10R:C -> A11R:G: adjacent_5p upward } 0 11 {A11R:G -> A10R:C: adjacent_3p downward } 0 12 {A10R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A21R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A11R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A20R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A11R:G -> A21R:G: outward } 0 17 {A21R:G -> A11R:G: outward } 0 18 {A20R:C -> A21R:G: adjacent_5p } 0 19 {A21R:G -> A20R:C: adjacent_3p } 0 20 {A21R:G -> A22R:C: adjacent_5p upward } 0 21 {A22R:C -> A21R:G: adjacent_3p downward } 0 22 {A22R:C -> A23R:A: adjacent_5p } 0 23 {A23R:A -> A22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A9R:A 0 1 A10R:C 0 2 A11R:G 0 3 A12R:C 0 4 A19R:G 0 5 A20R:C 0 6 A21R:G 0 7 A22R:C 0 [Edges] 0 {A9R:A -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:A: adjacent_3p downward } 0 2 {A9R:A -> A22R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 3 {A22R:C -> A9R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 4 {A10R:C -> A11R:G: adjacent_5p upward } 0 5 {A11R:G -> A10R:C: adjacent_3p downward } 0 6 {A10R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:G -> A12R:C: adjacent_5p upward } 0 9 {A12R:C -> A11R:G: adjacent_3p downward } 0 10 {A11R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A11R:G -> A21R:G: outward } 0 13 {A21R:G -> A11R:G: outward } 0 14 {A12R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A19R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A19R:G -> A20R:C: adjacent_5p upward } 0 17 {A20R:C -> A19R:G: adjacent_3p downward } 0 18 {A20R:C -> A21R:G: adjacent_5p } 0 19 {A21R:G -> A20R:C: adjacent_3p } 0 20 {A21R:G -> A22R:C: adjacent_5p upward } 0 21 {A22R:C -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:C 0 1 A11R:G 0 2 A12R:C 0 3 A13R:C 0 4 A18R:G 0 5 A19R:G 0 6 A20R:C 0 7 A21R:G 0 [Edges] 0 {A10R:C -> A11R:G: adjacent_5p upward } 0 1 {A11R:G -> A10R:C: adjacent_3p downward } 0 2 {A10R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:G -> A12R:C: adjacent_5p upward } 0 5 {A12R:C -> A11R:G: adjacent_3p downward } 0 6 {A11R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:G -> A21R:G: outward } 0 9 {A21R:G -> A11R:G: outward } 0 10 {A12R:C -> A13R:C: adjacent_5p upward } 0 11 {A13R:C -> A12R:C: adjacent_3p downward } 0 12 {A12R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A13R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A18R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A18R:G -> A19R:G: adjacent_5p upward } 0 17 {A19R:G -> A18R:G: adjacent_3p downward } 0 18 {A19R:G -> A20R:C: adjacent_5p upward } 0 19 {A20R:C -> A19R:G: adjacent_3p downward } 0 20 {A20R:C -> A21R:G: adjacent_5p } 0 21 {A21R:G -> A20R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A11R:G 0 1 A12R:C 0 2 A13R:C 0 3 A14R:G 0 4 A17R:A 0 5 A18R:G 0 6 A19R:G 0 7 A20R:C 0 [Edges] 0 {A11R:G -> A12R:C: adjacent_5p upward } 0 1 {A12R:C -> A11R:G: adjacent_3p downward } 0 2 {A11R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:C -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:C: adjacent_3p downward } 0 6 {A12R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:C -> A14R:G: adjacent_5p upward } 0 9 {A14R:G -> A13R:C: adjacent_3p downward } 0 10 {A13R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A18R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:G -> A17R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A17R:A -> A14R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A17R:A -> A18R:G: adjacent_5p upward } 0 15 {A18R:G -> A17R:A: adjacent_3p downward } 0 16 {A18R:G -> A19R:G: adjacent_5p upward } 0 17 {A19R:G -> A18R:G: adjacent_3p downward } 0 18 {A19R:G -> A20R:C: adjacent_5p upward } 0 19 {A20R:C -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:C 0 2 4R:C 0 3 5R:U 0 4 19R:U 0 5 20R:G 0 6 21R:G 0 7 22R:C 0 [Edges] 0 {2R:G -> 3R:C: adjacent_5p upward } 0 1 {3R:C -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {22R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:C -> 4R:C: adjacent_5p upward } 0 5 {4R:C -> 3R:C: adjacent_3p downward } 0 6 {3R:C -> 21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {21R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:C -> 5R:U: adjacent_5p upward } 0 9 {5R:U -> 4R:C: adjacent_3p downward } 0 10 {4R:C -> 20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {20R:G -> 4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {5R:U -> 19R:U: pairing antiparallel trans one_hbond 81 Ww/Hw } 0 13 {19R:U -> 5R:U: pairing antiparallel trans one_hbond 81 Hw/Ww } 0 14 {19R:U -> 20R:G: adjacent_5p } 0 15 {20R:G -> 19R:U: adjacent_3p } 0 16 {20R:G -> 21R:G: adjacent_5p upward } 0 17 {21R:G -> 20R:G: adjacent_3p downward } 0 18 {21R:G -> 22R:C: adjacent_5p upward } 0 19 {22R:C -> 21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 8R:G 0 1 9R:A 0 2 10R:C 0 3 11R:U 0 4 14R:G 0 5 15R:G 0 6 16R:U 0 7 17R:U 0 [Edges] 0 {8R:G -> 9R:A: adjacent_5p upward } 0 1 {9R:A -> 8R:G: adjacent_3p downward } 0 2 {8R:G -> 17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {17R:U -> 8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {9R:A -> 10R:C: adjacent_5p upward } 0 5 {10R:C -> 9R:A: adjacent_3p downward } 0 6 {9R:A -> 16R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {16R:U -> 9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {10R:C -> 11R:U: adjacent_5p upward } 0 9 {11R:U -> 10R:C: adjacent_3p downward } 0 10 {10R:C -> 15R:G: pairing antiparallel cis Ww/Ww } 0 11 {15R:G -> 10R:C: pairing antiparallel cis Ww/Ww } 0 12 {11R:U -> 14R:G: pairing parallel trans one_hbond Bs/Ww } 0 13 {14R:G -> 11R:U: pairing parallel trans one_hbond Ww/Bs } 0 14 {14R:G -> 15R:G: adjacent_5p outward } 0 15 {15R:G -> 14R:G: adjacent_3p outward } 0 16 {15R:G -> 16R:U: adjacent_5p upward } 0 17 {16R:U -> 15R:G: adjacent_3p downward } 0 18 {16R:U -> 17R:U: adjacent_5p upward } 0 19 {17R:U -> 16R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:C 0 2 4R:A 0 3 5R:C 0 4 23R:G 0 5 24R:U 0 6 25R:G 0 7 26R:C 0 [Edges] 0 {2R:G -> 3R:C: adjacent_5p upward } 0 1 {3R:C -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {26R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:C -> 4R:A: adjacent_5p upward } 0 5 {4R:A -> 3R:C: adjacent_3p downward } 0 6 {3R:C -> 25R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {25R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:A -> 5R:C: adjacent_5p upward } 0 9 {5R:C -> 4R:A: adjacent_3p downward } 0 10 {4R:A -> 24R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {24R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {4R:A -> 25R:G: outward } 0 13 {25R:G -> 4R:A: outward } 0 14 {5R:C -> 23R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {23R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {23R:G -> 24R:U: adjacent_5p upward } 0 17 {24R:U -> 23R:G: adjacent_3p downward } 0 18 {24R:U -> 25R:G: adjacent_5p upward } 0 19 {25R:G -> 24R:U: adjacent_3p downward } 0 20 {25R:G -> 26R:C: adjacent_5p upward } 0 21 {26R:C -> 25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 3R:C 0 1 4R:A 0 2 5R:C 0 3 6R:G 0 4 22R:C 0 5 23R:G 0 6 24R:U 0 7 25R:G 0 [Edges] 0 {3R:C -> 4R:A: adjacent_5p upward } 0 1 {4R:A -> 3R:C: adjacent_3p downward } 0 2 {3R:C -> 25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {25R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:A -> 5R:C: adjacent_5p upward } 0 5 {5R:C -> 4R:A: adjacent_3p downward } 0 6 {4R:A -> 24R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {24R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {4R:A -> 25R:G: outward } 0 9 {25R:G -> 4R:A: outward } 0 10 {5R:C -> 6R:G: adjacent_5p upward } 0 11 {6R:G -> 5R:C: adjacent_3p downward } 0 12 {5R:C -> 23R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {23R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {6R:G -> 22R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {22R:C -> 6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {6R:G -> 23R:G: outward } 0 17 {23R:G -> 6R:G: outward } 0 18 {22R:C -> 23R:G: adjacent_5p } 0 19 {23R:G -> 22R:C: adjacent_3p } 0 20 {23R:G -> 24R:U: adjacent_5p upward } 0 21 {24R:U -> 23R:G: adjacent_3p downward } 0 22 {24R:U -> 25R:G: adjacent_5p upward } 0 23 {25R:G -> 24R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 4R:A 0 1 5R:C 0 2 6R:G 0 3 7R:A 0 4 21R:U 0 5 22R:C 0 6 23R:G 0 7 24R:U 0 [Edges] 0 {4R:A -> 5R:C: adjacent_5p upward } 0 1 {5R:C -> 4R:A: adjacent_3p downward } 0 2 {4R:A -> 24R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {24R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {5R:C -> 6R:G: adjacent_5p upward } 0 5 {6R:G -> 5R:C: adjacent_3p downward } 0 6 {5R:C -> 23R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {23R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {6R:G -> 7R:A: adjacent_5p upward } 0 9 {7R:A -> 6R:G: adjacent_3p downward } 0 10 {6R:G -> 22R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {22R:C -> 6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {6R:G -> 23R:G: outward } 0 13 {23R:G -> 6R:G: outward } 0 14 {7R:A -> 21R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {21R:U -> 7R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {21R:U -> 22R:C: adjacent_5p } 0 17 {22R:C -> 21R:U: adjacent_3p } 0 18 {22R:C -> 23R:G: adjacent_5p } 0 19 {23R:G -> 22R:C: adjacent_3p } 0 20 {23R:G -> 24R:U: adjacent_5p upward } 0 21 {24R:U -> 23R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 5R:C 0 1 6R:G 0 2 7R:A 0 3 8R:G 0 4 20R:C 0 5 21R:U 0 6 22R:C 0 7 23R:G 0 [Edges] 0 {5R:C -> 6R:G: adjacent_5p upward } 0 1 {6R:G -> 5R:C: adjacent_3p downward } 0 2 {5R:C -> 23R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {23R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {6R:G -> 7R:A: adjacent_5p upward } 0 5 {7R:A -> 6R:G: adjacent_3p downward } 0 6 {6R:G -> 22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {22R:C -> 6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {6R:G -> 23R:G: outward } 0 9 {23R:G -> 6R:G: outward } 0 10 {7R:A -> 8R:G: adjacent_5p } 0 11 {8R:G -> 7R:A: adjacent_3p } 0 12 {7R:A -> 21R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {21R:U -> 7R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {8R:G -> 20R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {20R:C -> 8R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {20R:C -> 21R:U: adjacent_5p } 0 17 {21R:U -> 20R:C: adjacent_3p } 0 18 {21R:U -> 22R:C: adjacent_5p } 0 19 {22R:C -> 21R:U: adjacent_3p } 0 20 {22R:C -> 23R:G: adjacent_5p } 0 21 {23R:G -> 22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 D1R:G 0 1 D2R:C 0 2 D3R:G 0 3 D4R:G 0 4 D69R:U 0 5 D70R:C 0 6 D71R:G 0 7 D72R:C 0 [Edges] 0 {D1R:G -> D2R:C: adjacent_5p upward } 0 1 {D2R:C -> D1R:G: adjacent_3p downward } 0 2 {D1R:G -> D72R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D72R:C -> D1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D2R:C -> D3R:G: adjacent_5p upward } 0 5 {D3R:G -> D2R:C: adjacent_3p downward } 0 6 {D2R:C -> D71R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D71R:G -> D2R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D3R:G -> D4R:G: adjacent_5p upward } 0 9 {D4R:G -> D3R:G: adjacent_3p downward } 0 10 {D3R:G -> D70R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D70R:C -> D3R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D3R:G -> D71R:G: outward } 0 13 {D71R:G -> D3R:G: outward } 0 14 {D4R:G -> D69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {D69R:U -> D4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {D69R:U -> D70R:C: adjacent_5p } 0 17 {D70R:C -> D69R:U: adjacent_3p } 0 18 {D70R:C -> D71R:G: adjacent_5p } 0 19 {D71R:G -> D70R:C: adjacent_3p } 0 20 {D71R:G -> D72R:C: adjacent_5p upward } 0 21 {D72R:C -> D71R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D2R:C 0 1 D3R:G 0 2 D4R:G 0 3 D5R:A 0 4 D68R:U 0 5 D69R:U 0 6 D70R:C 0 7 D71R:G 0 [Edges] 0 {D2R:C -> D3R:G: adjacent_5p upward } 0 1 {D3R:G -> D2R:C: adjacent_3p downward } 0 2 {D2R:C -> D71R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D71R:G -> D2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D3R:G -> D4R:G: adjacent_5p upward } 0 5 {D4R:G -> D3R:G: adjacent_3p downward } 0 6 {D3R:G -> D70R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D70R:C -> D3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D3R:G -> D71R:G: outward } 0 9 {D71R:G -> D3R:G: outward } 0 10 {D4R:G -> D5R:A: adjacent_5p upward } 0 11 {D5R:A -> D4R:G: adjacent_3p downward } 0 12 {D4R:G -> D69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {D69R:U -> D4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {D5R:A -> D68R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {D68R:U -> D5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {D68R:U -> D69R:U: adjacent_5p upward } 0 17 {D69R:U -> D68R:U: adjacent_3p downward } 0 18 {D69R:U -> D70R:C: adjacent_5p } 0 19 {D70R:C -> D69R:U: adjacent_3p } 0 20 {D70R:C -> D71R:G: adjacent_5p } 0 21 {D71R:G -> D70R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D3R:G 0 1 D4R:G 0 2 D5R:A 0 3 D6R:U 0 4 D67R:A 0 5 D68R:U 0 6 D69R:U 0 7 D70R:C 0 [Edges] 0 {D3R:G -> D4R:G: adjacent_5p upward } 0 1 {D4R:G -> D3R:G: adjacent_3p downward } 0 2 {D3R:G -> D70R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D70R:C -> D3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D4R:G -> D5R:A: adjacent_5p upward } 0 5 {D5R:A -> D4R:G: adjacent_3p downward } 0 6 {D4R:G -> D69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {D69R:U -> D4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {D5R:A -> D6R:U: adjacent_5p upward } 0 9 {D6R:U -> D5R:A: adjacent_3p downward } 0 10 {D5R:A -> D68R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D68R:U -> D5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {D6R:U -> D67R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {D67R:A -> D6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {D67R:A -> D68R:U: adjacent_5p upward } 0 15 {D68R:U -> D67R:A: adjacent_3p downward } 0 16 {D68R:U -> D69R:U: adjacent_5p upward } 0 17 {D69R:U -> D68R:U: adjacent_3p downward } 0 18 {D69R:U -> D70R:C: adjacent_5p } 0 19 {D70R:C -> D69R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D4R:G 0 1 D5R:A 0 2 D6R:U 0 3 D7R:U 0 4 D66R:A 0 5 D67R:A 0 6 D68R:U 0 7 D69R:U 0 [Edges] 0 {D4R:G -> D5R:A: adjacent_5p upward } 0 1 {D5R:A -> D4R:G: adjacent_3p downward } 0 2 {D4R:G -> D69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {D69R:U -> D4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {D5R:A -> D6R:U: adjacent_5p upward } 0 5 {D6R:U -> D5R:A: adjacent_3p downward } 0 6 {D5R:A -> D68R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D68R:U -> D5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D6R:U -> D7R:U: adjacent_5p upward } 0 9 {D7R:U -> D6R:U: adjacent_3p downward } 0 10 {D6R:U -> D67R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D67R:A -> D6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D7R:U -> D66R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {D66R:A -> D7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {D66R:A -> D67R:A: adjacent_5p upward } 0 15 {D67R:A -> D66R:A: adjacent_3p downward } 0 16 {D67R:A -> D68R:U: adjacent_5p upward } 0 17 {D68R:U -> D67R:A: adjacent_3p downward } 0 18 {D68R:U -> D69R:U: adjacent_5p upward } 0 19 {D69R:U -> D68R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D50R:U 0 1 D51R:G 0 2 D52R:U 0 3 D53R:G 0 4 D61R:C 0 5 D62R:A 0 6 D63R:C 0 7 D64R:A 0 [Edges] 0 {D50R:U -> D51R:G: adjacent_5p } 0 1 {D51R:G -> D50R:U: adjacent_3p } 0 2 {D50R:U -> D64R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D64R:A -> D50R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D51R:G -> D52R:U: adjacent_5p upward } 0 5 {D52R:U -> D51R:G: adjacent_3p downward } 0 6 {D51R:G -> D63R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D63R:C -> D51R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D51R:G -> D64R:A: outward } 0 9 {D64R:A -> D51R:G: outward } 0 10 {D52R:U -> D53R:G: adjacent_5p } 0 11 {D53R:G -> D52R:U: adjacent_3p } 0 12 {D52R:U -> D62R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {D62R:A -> D52R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {D53R:G -> D61R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D61R:C -> D53R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D53R:G -> D62R:A: outward } 0 17 {D62R:A -> D53R:G: outward } 0 18 {D61R:C -> D62R:A: adjacent_5p upward } 0 19 {D62R:A -> D61R:C: adjacent_3p downward } 0 20 {D62R:A -> D63R:C: adjacent_5p upward } 0 21 {D63R:C -> D62R:A: adjacent_3p downward } 0 22 {D63R:C -> D64R:A: adjacent_5p upward } 0 23 {D64R:A -> D63R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 E1R:G 0 1 E2R:C 0 2 E3R:G 0 3 E4R:G 0 4 E69R:U 0 5 E70R:C 0 6 E71R:G 0 7 E72R:C 0 [Edges] 0 {E1R:G -> E2R:C: adjacent_5p upward } 0 1 {E2R:C -> E1R:G: adjacent_3p downward } 0 2 {E1R:G -> E72R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E72R:C -> E1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E2R:C -> E3R:G: adjacent_5p upward } 0 5 {E3R:G -> E2R:C: adjacent_3p downward } 0 6 {E2R:C -> E71R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E71R:G -> E2R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E3R:G -> E4R:G: adjacent_5p upward } 0 9 {E4R:G -> E3R:G: adjacent_3p downward } 0 10 {E3R:G -> E70R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E70R:C -> E3R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E3R:G -> E71R:G: outward } 0 13 {E71R:G -> E3R:G: outward } 0 14 {E4R:G -> E69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {E69R:U -> E4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {E69R:U -> E70R:C: adjacent_5p } 0 17 {E70R:C -> E69R:U: adjacent_3p } 0 18 {E70R:C -> E71R:G: adjacent_5p } 0 19 {E71R:G -> E70R:C: adjacent_3p } 0 20 {E71R:G -> E72R:C: adjacent_5p upward } 0 21 {E72R:C -> E71R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E2R:C 0 1 E3R:G 0 2 E4R:G 0 3 E5R:A 0 4 E68R:U 0 5 E69R:U 0 6 E70R:C 0 7 E71R:G 0 [Edges] 0 {E2R:C -> E3R:G: adjacent_5p upward } 0 1 {E3R:G -> E2R:C: adjacent_3p downward } 0 2 {E2R:C -> E71R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E71R:G -> E2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E3R:G -> E4R:G: adjacent_5p upward } 0 5 {E4R:G -> E3R:G: adjacent_3p downward } 0 6 {E3R:G -> E70R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E70R:C -> E3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E3R:G -> E71R:G: outward } 0 9 {E71R:G -> E3R:G: outward } 0 10 {E4R:G -> E5R:A: adjacent_5p upward } 0 11 {E5R:A -> E4R:G: adjacent_3p downward } 0 12 {E4R:G -> E69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {E69R:U -> E4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {E5R:A -> E68R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {E68R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {E68R:U -> E69R:U: adjacent_5p upward } 0 17 {E69R:U -> E68R:U: adjacent_3p downward } 0 18 {E69R:U -> E70R:C: adjacent_5p } 0 19 {E70R:C -> E69R:U: adjacent_3p } 0 20 {E70R:C -> E71R:G: adjacent_5p } 0 21 {E71R:G -> E70R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 E3R:G 0 1 E4R:G 0 2 E5R:A 0 3 E6R:U 0 4 E67R:A 0 5 E68R:U 0 6 E69R:U 0 7 E70R:C 0 [Edges] 0 {E3R:G -> E4R:G: adjacent_5p upward } 0 1 {E4R:G -> E3R:G: adjacent_3p downward } 0 2 {E3R:G -> E70R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E70R:C -> E3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E4R:G -> E5R:A: adjacent_5p upward } 0 5 {E5R:A -> E4R:G: adjacent_3p downward } 0 6 {E4R:G -> E69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {E69R:U -> E4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {E5R:A -> E6R:U: adjacent_5p upward } 0 9 {E6R:U -> E5R:A: adjacent_3p downward } 0 10 {E5R:A -> E68R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {E68R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {E6R:U -> E67R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {E67R:A -> E6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {E67R:A -> E68R:U: adjacent_5p upward } 0 15 {E68R:U -> E67R:A: adjacent_3p downward } 0 16 {E68R:U -> E69R:U: adjacent_5p upward } 0 17 {E69R:U -> E68R:U: adjacent_3p downward } 0 18 {E69R:U -> E70R:C: adjacent_5p } 0 19 {E70R:C -> E69R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E4R:G 0 1 E5R:A 0 2 E6R:U 0 3 E7R:U 0 4 E66R:A 0 5 E67R:A 0 6 E68R:U 0 7 E69R:U 0 [Edges] 0 {E4R:G -> E5R:A: adjacent_5p upward } 0 1 {E5R:A -> E4R:G: adjacent_3p downward } 0 2 {E4R:G -> E69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {E69R:U -> E4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {E5R:A -> E6R:U: adjacent_5p upward } 0 5 {E6R:U -> E5R:A: adjacent_3p downward } 0 6 {E5R:A -> E68R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {E68R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {E6R:U -> E7R:U: adjacent_5p upward } 0 9 {E7R:U -> E6R:U: adjacent_3p downward } 0 10 {E6R:U -> E67R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {E67R:A -> E6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {E7R:U -> E66R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {E66R:A -> E7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {E66R:A -> E67R:A: adjacent_5p upward } 0 15 {E67R:A -> E66R:A: adjacent_3p downward } 0 16 {E67R:A -> E68R:U: adjacent_5p upward } 0 17 {E68R:U -> E67R:A: adjacent_3p downward } 0 18 {E68R:U -> E69R:U: adjacent_5p upward } 0 19 {E69R:U -> E68R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E50R:U 0 1 E51R:G 0 2 E52R:U 0 3 E53R:G 0 4 E61R:C 0 5 E62R:A 0 6 E63R:C 0 7 E64R:A 0 [Edges] 0 {E50R:U -> E51R:G: adjacent_5p } 0 1 {E51R:G -> E50R:U: adjacent_3p } 0 2 {E50R:U -> E64R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {E64R:A -> E50R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {E51R:G -> E52R:U: adjacent_5p upward } 0 5 {E52R:U -> E51R:G: adjacent_3p downward } 0 6 {E51R:G -> E63R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E63R:C -> E51R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E51R:G -> E64R:A: outward } 0 9 {E64R:A -> E51R:G: outward } 0 10 {E52R:U -> E53R:G: adjacent_5p } 0 11 {E53R:G -> E52R:U: adjacent_3p } 0 12 {E52R:U -> E62R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {E62R:A -> E52R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {E53R:G -> E61R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {E61R:C -> E53R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {E53R:G -> E62R:A: outward } 0 17 {E62R:A -> E53R:G: outward } 0 18 {E61R:C -> E62R:A: adjacent_5p upward } 0 19 {E62R:A -> E61R:C: adjacent_3p downward } 0 20 {E62R:A -> E63R:C: adjacent_5p upward } 0 21 {E63R:C -> E62R:A: adjacent_3p downward } 0 22 {E63R:C -> E64R:A: adjacent_5p } 0 23 {E64R:A -> E63R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 F1R:G 0 1 F2R:C 0 2 F3R:G 0 3 F4R:G 0 4 F69R:U 0 5 F70R:C 0 6 F71R:G 0 7 F72R:C 0 [Edges] 0 {F1R:G -> F2R:C: adjacent_5p upward } 0 1 {F2R:C -> F1R:G: adjacent_3p downward } 0 2 {F1R:G -> F72R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {F72R:C -> F1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {F2R:C -> F3R:G: adjacent_5p upward } 0 5 {F3R:G -> F2R:C: adjacent_3p downward } 0 6 {F2R:C -> F71R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {F71R:G -> F2R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {F3R:G -> F4R:G: adjacent_5p upward } 0 9 {F4R:G -> F3R:G: adjacent_3p downward } 0 10 {F3R:G -> F70R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {F70R:C -> F3R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {F3R:G -> F71R:G: outward } 0 13 {F71R:G -> F3R:G: outward } 0 14 {F4R:G -> F69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {F69R:U -> F4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {F69R:U -> F70R:C: adjacent_5p } 0 17 {F70R:C -> F69R:U: adjacent_3p } 0 18 {F70R:C -> F71R:G: adjacent_5p } 0 19 {F71R:G -> F70R:C: adjacent_3p } 0 20 {F71R:G -> F72R:C: adjacent_5p upward } 0 21 {F72R:C -> F71R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 F2R:C 0 1 F3R:G 0 2 F4R:G 0 3 F5R:A 0 4 F68R:U 0 5 F69R:U 0 6 F70R:C 0 7 F71R:G 0 [Edges] 0 {F2R:C -> F3R:G: adjacent_5p upward } 0 1 {F3R:G -> F2R:C: adjacent_3p downward } 0 2 {F2R:C -> F71R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {F71R:G -> F2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {F3R:G -> F4R:G: adjacent_5p upward } 0 5 {F4R:G -> F3R:G: adjacent_3p downward } 0 6 {F3R:G -> F70R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {F70R:C -> F3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {F3R:G -> F71R:G: outward } 0 9 {F71R:G -> F3R:G: outward } 0 10 {F4R:G -> F5R:A: adjacent_5p upward } 0 11 {F5R:A -> F4R:G: adjacent_3p downward } 0 12 {F4R:G -> F69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {F69R:U -> F4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {F5R:A -> F68R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {F68R:U -> F5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {F68R:U -> F69R:U: adjacent_5p } 0 17 {F69R:U -> F68R:U: adjacent_3p } 0 18 {F69R:U -> F70R:C: adjacent_5p } 0 19 {F70R:C -> F69R:U: adjacent_3p } 0 20 {F70R:C -> F71R:G: adjacent_5p } 0 21 {F71R:G -> F70R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 F3R:G 0 1 F4R:G 0 2 F5R:A 0 3 F6R:U 0 4 F67R:A 0 5 F68R:U 0 6 F69R:U 0 7 F70R:C 0 [Edges] 0 {F3R:G -> F4R:G: adjacent_5p upward } 0 1 {F4R:G -> F3R:G: adjacent_3p downward } 0 2 {F3R:G -> F70R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {F70R:C -> F3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {F4R:G -> F5R:A: adjacent_5p upward } 0 5 {F5R:A -> F4R:G: adjacent_3p downward } 0 6 {F4R:G -> F69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {F69R:U -> F4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {F5R:A -> F6R:U: adjacent_5p upward } 0 9 {F6R:U -> F5R:A: adjacent_3p downward } 0 10 {F5R:A -> F68R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {F68R:U -> F5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {F6R:U -> F67R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {F67R:A -> F6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {F67R:A -> F68R:U: adjacent_5p upward } 0 15 {F68R:U -> F67R:A: adjacent_3p downward } 0 16 {F68R:U -> F69R:U: adjacent_5p } 0 17 {F69R:U -> F68R:U: adjacent_3p } 0 18 {F69R:U -> F70R:C: adjacent_5p } 0 19 {F70R:C -> F69R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 F4R:G 0 1 F5R:A 0 2 F6R:U 0 3 F7R:U 0 4 F66R:A 0 5 F67R:A 0 6 F68R:U 0 7 F69R:U 0 [Edges] 0 {F4R:G -> F5R:A: adjacent_5p upward } 0 1 {F5R:A -> F4R:G: adjacent_3p downward } 0 2 {F4R:G -> F69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {F69R:U -> F4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {F5R:A -> F6R:U: adjacent_5p upward } 0 5 {F6R:U -> F5R:A: adjacent_3p downward } 0 6 {F5R:A -> F68R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {F68R:U -> F5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {F6R:U -> F7R:U: adjacent_5p upward } 0 9 {F7R:U -> F6R:U: adjacent_3p downward } 0 10 {F6R:U -> F67R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {F67R:A -> F6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {F7R:U -> F66R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {F66R:A -> F7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {F66R:A -> F67R:A: adjacent_5p upward } 0 15 {F67R:A -> F66R:A: adjacent_3p downward } 0 16 {F67R:A -> F68R:U: adjacent_5p upward } 0 17 {F68R:U -> F67R:A: adjacent_3p downward } 0 18 {F68R:U -> F69R:U: adjacent_5p } 0 19 {F69R:U -> F68R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 F11R:C 0 1 F12R:U 0 2 F13R:C 0 3 F14R:A 0 4 F21R:A 0 5 F22R:G 0 6 F23R:A 0 7 F24R:G 0 [Edges] 0 {F11R:C -> F12R:U: adjacent_5p upward } 0 1 {F12R:U -> F11R:C: adjacent_3p downward } 0 2 {F11R:C -> F24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {F24R:G -> F11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {F12R:U -> F13R:C: adjacent_5p upward } 0 5 {F13R:C -> F12R:U: adjacent_3p downward } 0 6 {F12R:U -> F23R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {F23R:A -> F12R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {F13R:C -> F14R:A: adjacent_5p } 0 9 {F14R:A -> F13R:C: adjacent_3p } 0 10 {F13R:C -> F22R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {F22R:G -> F13R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {F14R:A -> F21R:A: pairing antiparallel trans one_hbond 40 Wh/Ss } 0 13 {F21R:A -> F14R:A: pairing antiparallel trans one_hbond 40 Ss/Wh } 0 14 {F14R:A -> F22R:G: outward } 0 15 {F22R:G -> F14R:A: outward } 0 16 {F21R:A -> F22R:G: adjacent_5p } 0 17 {F22R:G -> F21R:A: adjacent_3p } 0 18 {F22R:G -> F23R:A: adjacent_5p upward } 0 19 {F23R:A -> F22R:G: adjacent_3p downward } 0 20 {F23R:A -> F24R:G: adjacent_5p upward } 0 21 {F24R:G -> F23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 F50R:U 0 1 F51R:G 0 2 F52R:U 0 3 F53R:G 0 4 F61R:C 0 5 F62R:A 0 6 F63R:C 0 7 F64R:A 0 [Edges] 0 {F50R:U -> F51R:G: adjacent_5p } 0 1 {F51R:G -> F50R:U: adjacent_3p } 0 2 {F50R:U -> F64R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {F64R:A -> F50R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {F51R:G -> F52R:U: adjacent_5p upward } 0 5 {F52R:U -> F51R:G: adjacent_3p downward } 0 6 {F51R:G -> F63R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {F63R:C -> F51R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {F51R:G -> F64R:A: outward } 0 9 {F64R:A -> F51R:G: outward } 0 10 {F52R:U -> F53R:G: adjacent_5p } 0 11 {F53R:G -> F52R:U: adjacent_3p } 0 12 {F52R:U -> F62R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {F62R:A -> F52R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {F53R:G -> F61R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {F61R:C -> F53R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {F53R:G -> F62R:A: outward } 0 17 {F62R:A -> F53R:G: outward } 0 18 {F61R:C -> F62R:A: adjacent_5p upward } 0 19 {F62R:A -> F61R:C: adjacent_3p downward } 0 20 {F62R:A -> F63R:C: adjacent_5p upward } 0 21 {F63R:C -> F62R:A: adjacent_3p downward } 0 22 {F63R:C -> F64R:A: adjacent_5p } 0 23 {F64R:A -> F63R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A2R:A 0 1 A3R:G 0 2 A4R:G 0 3 A5R:A 0 4 B17R:A 0 5 B18R:U 0 6 B19R:C 0 7 B20R:U 0 [Edges] 0 {A2R:A -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:A: adjacent_3p downward } 0 2 {A2R:A -> B20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B20R:U -> A2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> B19R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B19R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> B18R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B18R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A5R:A -> B17R:A: pairing antiparallel trans one_hbond 41 Ss/Hh } 0 13 {B17R:A -> A5R:A: pairing antiparallel trans one_hbond 41 Hh/Ss } 0 14 {B17R:A -> B18R:U: adjacent_5p } 0 15 {B18R:U -> B17R:A: adjacent_3p } 0 16 {B18R:U -> B19R:C: adjacent_5p } 0 17 {B19R:C -> B18R:U: adjacent_3p } 0 18 {B19R:C -> B20R:U: adjacent_5p } 0 19 {B20R:U -> B19R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:G 0 2 A5R:A 0 3 A6R:A 0 4 B16R:A 0 5 B17R:A 0 6 B18R:U 0 7 B19R:C 0 [Edges] 0 {A3R:G -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> B19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B19R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B18R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B18R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A5R:A -> A6R:A: adjacent_5p } 0 9 {A6R:A -> A5R:A: adjacent_3p } 0 10 {A5R:A -> B16R:A: inward } 0 11 {B16R:A -> A5R:A: inward } 0 12 {A5R:A -> B17R:A: pairing antiparallel trans one_hbond 41 Ss/Hh } 0 13 {B17R:A -> A5R:A: pairing antiparallel trans one_hbond 41 Hh/Ss } 0 14 {A6R:A -> B16R:A: pairing antiparallel trans 41 Hh/Ss } 0 15 {B16R:A -> A6R:A: pairing antiparallel trans 41 Ss/Hh } 0 16 {A6R:A -> B17R:A: outward } 0 17 {B17R:A -> A6R:A: outward } 0 18 {B16R:A -> B17R:A: adjacent_5p } 0 19 {B17R:A -> B16R:A: adjacent_3p } 0 20 {B17R:A -> B18R:U: adjacent_5p } 0 21 {B18R:U -> B17R:A: adjacent_3p } 0 22 {B18R:U -> B19R:C: adjacent_5p } 0 23 {B19R:C -> B18R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 12 . . 3 . . 9 . 14 16 . . 4 . . 11 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:A 0 3 A7R:G 0 4 B15R:U 0 5 B16R:A 0 6 B17R:A 0 7 B18R:U 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B18R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B18R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A5R:A -> A6R:A: adjacent_5p } 0 5 {A6R:A -> A5R:A: adjacent_3p } 0 6 {A5R:A -> B16R:A: inward } 0 7 {B16R:A -> A5R:A: inward } 0 8 {A5R:A -> B17R:A: pairing antiparallel trans one_hbond 41 Ss/Hh } 0 9 {B17R:A -> A5R:A: pairing antiparallel trans one_hbond 41 Hh/Ss } 0 10 {A6R:A -> A7R:G: adjacent_5p upward } 0 11 {A7R:G -> A6R:A: adjacent_3p downward } 0 12 {A6R:A -> B16R:A: pairing antiparallel trans 41 Hh/Ss } 0 13 {B16R:A -> A6R:A: pairing antiparallel trans 41 Ss/Hh } 0 14 {A6R:A -> B17R:A: outward } 0 15 {B17R:A -> A6R:A: outward } 0 16 {A7R:G -> B15R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 17 {B15R:U -> A7R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 18 {B15R:U -> B16R:A: adjacent_5p upward } 0 19 {B16R:A -> B15R:U: adjacent_3p downward } 0 20 {B16R:A -> B17R:A: adjacent_5p } 0 21 {B17R:A -> B16R:A: adjacent_3p } 0 22 {B17R:A -> B18R:U: adjacent_5p } 0 23 {B18R:U -> B17R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . 7 13 . 19 . 20 . 6 . 9 15 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:A 0 2 A7R:G 0 3 A8R:G 0 4 B14R:U 0 5 B15R:U 0 6 B16R:A 0 7 B17R:A 0 [Edges] 0 {A5R:A -> A6R:A: adjacent_5p } 0 1 {A6R:A -> A5R:A: adjacent_3p } 0 2 {A5R:A -> B16R:A: inward } 0 3 {B16R:A -> A5R:A: inward } 0 4 {A5R:A -> B17R:A: pairing antiparallel trans one_hbond 41 Ss/Hh } 0 5 {B17R:A -> A5R:A: pairing antiparallel trans one_hbond 41 Hh/Ss } 0 6 {A6R:A -> A7R:G: adjacent_5p upward } 0 7 {A7R:G -> A6R:A: adjacent_3p downward } 0 8 {A6R:A -> B16R:A: pairing antiparallel trans 41 Hh/Ss } 0 9 {B16R:A -> A6R:A: pairing antiparallel trans 41 Ss/Hh } 0 10 {A6R:A -> B17R:A: outward } 0 11 {B17R:A -> A6R:A: outward } 0 12 {A7R:G -> A8R:G: adjacent_5p upward } 0 13 {A8R:G -> A7R:G: adjacent_3p downward } 0 14 {A7R:G -> B15R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {B15R:U -> A7R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A8R:G -> B14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 17 {B14R:U -> A8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 18 {B14R:U -> B15R:U: adjacent_5p upward } 0 19 {B15R:U -> B14R:U: adjacent_3p downward } 0 20 {B15R:U -> B16R:A: adjacent_5p upward } 0 21 {B16R:A -> B15R:U: adjacent_3p downward } 0 22 {B16R:A -> B17R:A: adjacent_5p } 0 23 {B17R:A -> B16R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 18 . . 5 . . 15 . 19 . 20 . 6 3 9 . . . 21 . 22 7 5 11 . . . . 23 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:G 0 2 A8R:G 0 3 A9R:C 0 4 B13R:G 0 5 B14R:U 0 6 B15R:U 0 7 B16R:A 0 [Edges] 0 {A6R:A -> A7R:G: adjacent_5p upward } 0 1 {A7R:G -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> B16R:A: pairing antiparallel trans 41 Hh/Ss } 0 3 {B16R:A -> A6R:A: pairing antiparallel trans 41 Ss/Hh } 0 4 {A7R:G -> A8R:G: adjacent_5p upward } 0 5 {A8R:G -> A7R:G: adjacent_3p downward } 0 6 {A7R:G -> B15R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B15R:U -> A7R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A8R:G -> A9R:C: adjacent_5p upward } 0 9 {A9R:C -> A8R:G: adjacent_3p downward } 0 10 {A8R:G -> B14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B14R:U -> A8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A9R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B13R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B13R:G -> B14R:U: adjacent_5p upward } 0 15 {B14R:U -> B13R:G: adjacent_3p downward } 0 16 {B14R:U -> B15R:U: adjacent_5p upward } 0 17 {B15R:U -> B14R:U: adjacent_3p downward } 0 18 {B15R:U -> B16R:A: adjacent_5p upward } 0 19 {B16R:A -> B15R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:G 0 2 A9R:C 0 3 A10R:G 0 4 B12R:C 0 5 B13R:G 0 6 B14R:U 0 7 B15R:U 0 [Edges] 0 {A7R:G -> A8R:G: adjacent_5p upward } 0 1 {A8R:G -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> B15R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B15R:U -> A7R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A8R:G -> A9R:C: adjacent_5p upward } 0 5 {A9R:C -> A8R:G: adjacent_3p downward } 0 6 {A8R:G -> B14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B14R:U -> A8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A9R:C -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:C: adjacent_3p downward } 0 10 {A9R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B13R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B12R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A10R:G -> B13R:G: outward } 0 15 {B13R:G -> A10R:G: outward } 0 16 {B12R:C -> B13R:G: adjacent_5p upward } 0 17 {B13R:G -> B12R:C: adjacent_3p downward } 0 18 {B13R:G -> B14R:U: adjacent_5p upward } 0 19 {B14R:U -> B13R:G: adjacent_3p downward } 0 20 {B14R:U -> B15R:U: adjacent_5p upward } 0 21 {B15R:U -> B14R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:C 0 2 A9R:A 0 3 A10R:C 0 4 A31R:G 0 5 A32R:U 0 6 A33R:G 0 7 A34R:C 0 [Edges] 0 {A7R:G -> A8R:C: adjacent_5p upward } 0 1 {A8R:C -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A34R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:C -> A9R:A: adjacent_5p } 0 5 {A9R:A -> A8R:C: adjacent_3p } 0 6 {A8R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A33R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:A -> A10R:C: adjacent_5p upward } 0 9 {A10R:C -> A9R:A: adjacent_3p downward } 0 10 {A9R:A -> A32R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A32R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:A -> A33R:G: outward } 0 13 {A33R:G -> A9R:A: outward } 0 14 {A10R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A31R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A31R:G -> A32R:U: adjacent_5p upward } 0 17 {A32R:U -> A31R:G: adjacent_3p downward } 0 18 {A32R:U -> A33R:G: adjacent_5p } 0 19 {A33R:G -> A32R:U: adjacent_3p } 0 20 {A33R:G -> A34R:C: adjacent_5p upward } 0 21 {A34R:C -> A33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:A 0 2 A10R:C 0 3 A11R:U 0 4 A30R:U 0 5 A31R:G 0 6 A32R:U 0 7 A33R:G 0 [Edges] 0 {A8R:C -> A9R:A: adjacent_5p } 0 1 {A9R:A -> A8R:C: adjacent_3p } 0 2 {A8R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A33R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:A -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:A: adjacent_3p downward } 0 6 {A9R:A -> A32R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A32R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:A -> A33R:G: outward } 0 9 {A33R:G -> A9R:A: outward } 0 10 {A10R:C -> A11R:U: adjacent_5p upward } 0 11 {A11R:U -> A10R:C: adjacent_3p downward } 0 12 {A10R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A31R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A11R:U -> A30R:U: pairing antiparallel cis XVI Ws/Ww } 0 15 {A30R:U -> A11R:U: pairing antiparallel cis XVI Ww/Ws } 0 16 {A30R:U -> A31R:G: adjacent_5p } 0 17 {A31R:G -> A30R:U: adjacent_3p } 0 18 {A31R:G -> A32R:U: adjacent_5p upward } 0 19 {A32R:U -> A31R:G: adjacent_3p downward } 0 20 {A32R:U -> A33R:G: adjacent_5p } 0 21 {A33R:G -> A32R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:A 0 1 A10R:C 0 2 A11R:U 0 3 A12R:C 0 4 A29R:U 0 5 A30R:U 0 6 A31R:G 0 7 A32R:U 0 [Edges] 0 {A9R:A -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:A: adjacent_3p downward } 0 2 {A9R:A -> A32R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A32R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A10R:C -> A11R:U: adjacent_5p upward } 0 5 {A11R:U -> A10R:C: adjacent_3p downward } 0 6 {A10R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A31R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:U -> A12R:C: adjacent_5p } 0 9 {A12R:C -> A11R:U: adjacent_3p } 0 10 {A11R:U -> A30R:U: pairing antiparallel cis XVI Ws/Ww } 0 11 {A30R:U -> A11R:U: pairing antiparallel cis XVI Ww/Ws } 0 12 {A12R:C -> A29R:U: pairing antiparallel cis XVIII Ww/Ww } 0 13 {A29R:U -> A12R:C: pairing antiparallel cis XVIII Ww/Ww } 0 14 {A29R:U -> A30R:U: adjacent_5p } 0 15 {A30R:U -> A29R:U: adjacent_3p } 0 16 {A30R:U -> A31R:G: adjacent_5p } 0 17 {A31R:G -> A30R:U: adjacent_3p } 0 18 {A31R:G -> A32R:U: adjacent_5p upward } 0 19 {A32R:U -> A31R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:C 0 1 A11R:U 0 2 A12R:C 0 3 A13R:U 0 4 A28R:U 0 5 A29R:U 0 6 A30R:U 0 7 A31R:G 0 [Edges] 0 {A10R:C -> A11R:U: adjacent_5p upward } 0 1 {A11R:U -> A10R:C: adjacent_3p downward } 0 2 {A10R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A31R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:U -> A12R:C: adjacent_5p } 0 5 {A12R:C -> A11R:U: adjacent_3p } 0 6 {A11R:U -> A30R:U: pairing antiparallel cis XVI Ws/Ww } 0 7 {A30R:U -> A11R:U: pairing antiparallel cis XVI Ww/Ws } 0 8 {A12R:C -> A13R:U: adjacent_5p upward } 0 9 {A13R:U -> A12R:C: adjacent_3p downward } 0 10 {A12R:C -> A29R:U: pairing antiparallel cis XVIII Ww/Ww } 0 11 {A29R:U -> A12R:C: pairing antiparallel cis XVIII Ww/Ww } 0 12 {A13R:U -> A28R:U: pairing antiparallel cis XVI Ww/Ws } 0 13 {A28R:U -> A13R:U: pairing antiparallel cis XVI Ws/Ww } 0 14 {A28R:U -> A29R:U: adjacent_5p } 0 15 {A29R:U -> A28R:U: adjacent_3p } 0 16 {A29R:U -> A30R:U: adjacent_5p } 0 17 {A30R:U -> A29R:U: adjacent_3p } 0 18 {A30R:U -> A31R:G: adjacent_5p } 0 19 {A31R:G -> A30R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:C 0 2 A13R:U 0 3 A14R:G 0 4 A27R:C 0 5 A28R:U 0 6 A29R:U 0 7 A30R:U 0 [Edges] 0 {A11R:U -> A12R:C: adjacent_5p } 0 1 {A12R:C -> A11R:U: adjacent_3p } 0 2 {A11R:U -> A30R:U: pairing antiparallel cis XVI Ws/Ww } 0 3 {A30R:U -> A11R:U: pairing antiparallel cis XVI Ww/Ws } 0 4 {A12R:C -> A13R:U: adjacent_5p upward } 0 5 {A13R:U -> A12R:C: adjacent_3p downward } 0 6 {A12R:C -> A29R:U: pairing antiparallel cis XVIII Ww/Ww } 0 7 {A29R:U -> A12R:C: pairing antiparallel cis XVIII Ww/Ww } 0 8 {A13R:U -> A14R:G: adjacent_5p } 0 9 {A14R:G -> A13R:U: adjacent_3p } 0 10 {A13R:U -> A28R:U: pairing antiparallel cis XVI Ww/Ws } 0 11 {A28R:U -> A13R:U: pairing antiparallel cis XVI Ws/Ww } 0 12 {A14R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A27R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A27R:C -> A28R:U: adjacent_5p } 0 15 {A28R:U -> A27R:C: adjacent_3p } 0 16 {A28R:U -> A29R:U: adjacent_5p } 0 17 {A29R:U -> A28R:U: adjacent_3p } 0 18 {A29R:U -> A30R:U: adjacent_5p } 0 19 {A30R:U -> A29R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A12R:C 0 1 A13R:U 0 2 A14R:G 0 3 A15R:G 0 4 A26R:C 0 5 A27R:C 0 6 A28R:U 0 7 A29R:U 0 [Edges] 0 {A12R:C -> A13R:U: adjacent_5p upward } 0 1 {A13R:U -> A12R:C: adjacent_3p downward } 0 2 {A12R:C -> A29R:U: pairing antiparallel cis XVIII Ww/Ww } 0 3 {A29R:U -> A12R:C: pairing antiparallel cis XVIII Ww/Ww } 0 4 {A13R:U -> A14R:G: adjacent_5p } 0 5 {A14R:G -> A13R:U: adjacent_3p } 0 6 {A13R:U -> A28R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {A28R:U -> A13R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {A14R:G -> A15R:G: adjacent_5p upward } 0 9 {A15R:G -> A14R:G: adjacent_3p downward } 0 10 {A14R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A27R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A15R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A26R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A26R:C -> A27R:C: adjacent_5p } 0 15 {A27R:C -> A26R:C: adjacent_3p } 0 16 {A27R:C -> A28R:U: adjacent_5p } 0 17 {A28R:U -> A27R:C: adjacent_3p } 0 18 {A28R:U -> A29R:U: adjacent_5p } 0 19 {A29R:U -> A28R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A13R:U 0 1 A14R:G 0 2 A15R:G 0 3 A16R:U 0 4 A25R:A 0 5 A26R:C 0 6 A27R:C 0 7 A28R:U 0 [Edges] 0 {A13R:U -> A14R:G: adjacent_5p } 0 1 {A14R:G -> A13R:U: adjacent_3p } 0 2 {A13R:U -> A28R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {A28R:U -> A13R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {A14R:G -> A15R:G: adjacent_5p upward } 0 5 {A15R:G -> A14R:G: adjacent_3p downward } 0 6 {A14R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A27R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A15R:G -> A16R:U: adjacent_5p upward } 0 9 {A16R:U -> A15R:G: adjacent_3p downward } 0 10 {A15R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A26R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A16R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A25R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A25R:A -> A26R:C: adjacent_5p upward } 0 15 {A26R:C -> A25R:A: adjacent_3p downward } 0 16 {A26R:C -> A27R:C: adjacent_5p } 0 17 {A27R:C -> A26R:C: adjacent_3p } 0 18 {A27R:C -> A28R:U: adjacent_5p } 0 19 {A28R:U -> A27R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A14R:G 0 1 A15R:G 0 2 A16R:U 0 3 A17R:A 0 4 A24R:U 0 5 A25R:A 0 6 A26R:C 0 7 A27R:C 0 [Edges] 0 {A14R:G -> A15R:G: adjacent_5p upward } 0 1 {A15R:G -> A14R:G: adjacent_3p downward } 0 2 {A14R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A15R:G -> A16R:U: adjacent_5p upward } 0 5 {A16R:U -> A15R:G: adjacent_3p downward } 0 6 {A15R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A26R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A16R:U -> A17R:A: adjacent_5p upward } 0 9 {A17R:A -> A16R:U: adjacent_3p downward } 0 10 {A16R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A25R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A17R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A24R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A17R:A -> A25R:A: outward } 0 15 {A25R:A -> A17R:A: outward } 0 16 {A24R:U -> A25R:A: adjacent_5p upward } 0 17 {A25R:A -> A24R:U: adjacent_3p downward } 0 18 {A25R:A -> A26R:C: adjacent_5p upward } 0 19 {A26R:C -> A25R:A: adjacent_3p downward } 0 20 {A26R:C -> A27R:C: adjacent_5p } 0 21 {A27R:C -> A26R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A15R:G 0 1 A16R:U 0 2 A17R:A 0 3 A18R:U 0 4 A23R:G 0 5 A24R:U 0 6 A25R:A 0 7 A26R:C 0 [Edges] 0 {A15R:G -> A16R:U: adjacent_5p upward } 0 1 {A16R:U -> A15R:G: adjacent_3p downward } 0 2 {A15R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A26R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A16R:U -> A17R:A: adjacent_5p upward } 0 5 {A17R:A -> A16R:U: adjacent_3p downward } 0 6 {A16R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A25R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A17R:A -> A18R:U: adjacent_5p upward } 0 9 {A18R:U -> A17R:A: adjacent_3p downward } 0 10 {A17R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A24R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A17R:A -> A25R:A: outward } 0 13 {A25R:A -> A17R:A: outward } 0 14 {A18R:U -> A23R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A23R:G -> A18R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A23R:G -> A24R:U: adjacent_5p upward } 0 17 {A24R:U -> A23R:G: adjacent_3p downward } 0 18 {A24R:U -> A25R:A: adjacent_5p upward } 0 19 {A25R:A -> A24R:U: adjacent_3p downward } 0 20 {A25R:A -> A26R:C: adjacent_5p upward } 0 21 {A26R:C -> A25R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A16R:U 0 1 A17R:A 0 2 A18R:U 0 3 A19R:U 0 4 A22R:G 0 5 A23R:G 0 6 A24R:U 0 7 A25R:A 0 [Edges] 0 {A16R:U -> A17R:A: adjacent_5p upward } 0 1 {A17R:A -> A16R:U: adjacent_3p downward } 0 2 {A16R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A25R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A17R:A -> A18R:U: adjacent_5p upward } 0 5 {A18R:U -> A17R:A: adjacent_3p downward } 0 6 {A17R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A24R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A17R:A -> A25R:A: outward } 0 9 {A25R:A -> A17R:A: outward } 0 10 {A18R:U -> A19R:U: adjacent_5p } 0 11 {A19R:U -> A18R:U: adjacent_3p } 0 12 {A18R:U -> A23R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A23R:G -> A18R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A19R:U -> A22R:G: pairing parallel trans 87 Bs/Ww } 0 15 {A22R:G -> A19R:U: pairing parallel trans 87 Ww/Bs } 0 16 {A22R:G -> A23R:G: adjacent_5p } 0 17 {A23R:G -> A22R:G: adjacent_3p } 0 18 {A23R:G -> A24R:U: adjacent_5p upward } 0 19 {A24R:U -> A23R:G: adjacent_3p downward } 0 20 {A24R:U -> A25R:A: adjacent_5p upward } 0 21 {A25R:A -> A24R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:G 0 2 A3R:C 0 3 A4R:G 0 4 A69R:C 0 5 A70R:G 0 6 A71R:C 0 7 A72R:C 0 [Edges] 0 {A1R:G -> A2R:G: adjacent_5p upward } 0 1 {A2R:G -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A72R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A72R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:G -> A3R:C: adjacent_5p upward } 0 5 {A3R:C -> A2R:G: adjacent_3p downward } 0 6 {A2R:G -> A71R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A71R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:C -> A4R:G: adjacent_5p } 0 9 {A4R:G -> A3R:C: adjacent_3p } 0 10 {A3R:C -> A70R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A70R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A69R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A69R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A4R:G -> A70R:G: outward } 0 15 {A70R:G -> A4R:G: outward } 0 16 {A69R:C -> A70R:G: adjacent_5p } 0 17 {A70R:G -> A69R:C: adjacent_3p } 0 18 {A70R:G -> A71R:C: adjacent_5p upward } 0 19 {A71R:C -> A70R:G: adjacent_3p downward } 0 20 {A71R:C -> A72R:C: adjacent_5p upward } 0 21 {A72R:C -> A71R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:C 0 4 A68R:G 0 5 A69R:C 0 6 A70R:G 0 7 A71R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A71R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A71R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p } 0 5 {A4R:G -> A3R:C: adjacent_3p } 0 6 {A3R:C -> A70R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A70R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A69R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A69R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A70R:G: outward } 0 13 {A70R:G -> A4R:G: outward } 0 14 {A5R:C -> A68R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A68R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A68R:G -> A69R:C: adjacent_5p upward } 0 17 {A69R:C -> A68R:G: adjacent_3p downward } 0 18 {A69R:C -> A70R:G: adjacent_5p } 0 19 {A70R:G -> A69R:C: adjacent_3p } 0 20 {A70R:G -> A71R:C: adjacent_5p upward } 0 21 {A71R:C -> A70R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:C 0 3 A6R:G 0 4 A67R:C 0 5 A68R:G 0 6 A69R:C 0 7 A70R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p } 0 1 {A4R:G -> A3R:C: adjacent_3p } 0 2 {A3R:C -> A70R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A70R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A69R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A69R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A70R:G: outward } 0 9 {A70R:G -> A4R:G: outward } 0 10 {A5R:C -> A6R:G: adjacent_5p } 0 11 {A6R:G -> A5R:C: adjacent_3p } 0 12 {A5R:C -> A68R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A68R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:G -> A67R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A67R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A6R:G -> A68R:G: outward } 0 17 {A68R:G -> A6R:G: outward } 0 18 {A67R:C -> A68R:G: adjacent_5p upward } 0 19 {A68R:G -> A67R:C: adjacent_3p downward } 0 20 {A68R:G -> A69R:C: adjacent_5p upward } 0 21 {A69R:C -> A68R:G: adjacent_3p downward } 0 22 {A69R:C -> A70R:G: adjacent_5p } 0 23 {A70R:G -> A69R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:C 0 2 A6R:G 0 3 A7R:U 0 4 A66R:A 0 5 A67R:C 0 6 A68R:G 0 7 A69R:C 0 [Edges] 0 {A4R:G -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A69R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:G: adjacent_5p } 0 5 {A6R:G -> A5R:C: adjacent_3p } 0 6 {A5R:C -> A68R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A68R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> A7R:U: adjacent_5p upward } 0 9 {A7R:U -> A6R:G: adjacent_3p downward } 0 10 {A6R:G -> A67R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A67R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:G -> A68R:G: outward } 0 13 {A68R:G -> A6R:G: outward } 0 14 {A7R:U -> A66R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A66R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A66R:A -> A67R:C: adjacent_5p upward } 0 17 {A67R:C -> A66R:A: adjacent_3p downward } 0 18 {A67R:C -> A68R:G: adjacent_5p upward } 0 19 {A68R:G -> A67R:C: adjacent_3p downward } 0 20 {A68R:G -> A69R:C: adjacent_5p upward } 0 21 {A69R:C -> A68R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:A 0 1 A11R:C 0 2 A12R:A 0 3 A13R:A 0 4 A22R:A 0 5 A23R:U 0 6 A24R:G 0 7 A25R:U 0 [Edges] 0 {A10R:A -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:A: adjacent_3p downward } 0 2 {A10R:A -> A25R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A25R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A11R:C -> A12R:A: adjacent_5p upward } 0 5 {A12R:A -> A11R:C: adjacent_3p downward } 0 6 {A11R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A24R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:A -> A13R:A: adjacent_5p upward } 0 9 {A13R:A -> A12R:A: adjacent_3p downward } 0 10 {A12R:A -> A23R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A23R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A12R:A -> A24R:G: outward } 0 13 {A24R:G -> A12R:A: outward } 0 14 {A13R:A -> A22R:A: pairing antiparallel trans one_hbond 41 Ss/Hh } 0 15 {A22R:A -> A13R:A: pairing antiparallel trans one_hbond 41 Hh/Ss } 0 16 {A22R:A -> A23R:U: adjacent_5p upward } 0 17 {A23R:U -> A22R:A: adjacent_3p downward } 0 18 {A23R:U -> A24R:G: adjacent_5p upward } 0 19 {A24R:G -> A23R:U: adjacent_3p downward } 0 20 {A24R:G -> A25R:U: adjacent_5p upward } 0 21 {A25R:U -> A24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A27R:G 0 1 A28R:C 0 2 A29R:G 0 3 A30R:G 0 4 A40R:C 0 5 A41R:C 0 6 A42R:G 0 7 A43R:U 0 [Edges] 0 {A27R:G -> A28R:C: adjacent_5p upward } 0 1 {A28R:C -> A27R:G: adjacent_3p downward } 0 2 {A27R:G -> A43R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A43R:U -> A27R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A28R:C -> A29R:G: adjacent_5p } 0 5 {A29R:G -> A28R:C: adjacent_3p } 0 6 {A28R:C -> A42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A42R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A29R:G -> A30R:G: adjacent_5p upward } 0 9 {A30R:G -> A29R:G: adjacent_3p downward } 0 10 {A29R:G -> A41R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A41R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A29R:G -> A42R:G: outward } 0 13 {A42R:G -> A29R:G: outward } 0 14 {A30R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A40R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A40R:C -> A41R:C: adjacent_5p upward } 0 17 {A41R:C -> A40R:C: adjacent_3p downward } 0 18 {A41R:C -> A42R:G: adjacent_5p } 0 19 {A42R:G -> A41R:C: adjacent_3p } 0 20 {A42R:G -> A43R:U: adjacent_5p upward } 0 21 {A43R:U -> A42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A28R:C 0 1 A29R:G 0 2 A30R:G 0 3 A31R:A 0 4 A39R:U 0 5 A40R:C 0 6 A41R:C 0 7 A42R:G 0 [Edges] 0 {A28R:C -> A29R:G: adjacent_5p } 0 1 {A29R:G -> A28R:C: adjacent_3p } 0 2 {A28R:C -> A42R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A42R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A29R:G -> A30R:G: adjacent_5p upward } 0 5 {A30R:G -> A29R:G: adjacent_3p downward } 0 6 {A29R:G -> A41R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A41R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A29R:G -> A42R:G: outward } 0 9 {A42R:G -> A29R:G: outward } 0 10 {A30R:G -> A31R:A: adjacent_5p upward } 0 11 {A31R:A -> A30R:G: adjacent_3p downward } 0 12 {A30R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A40R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A31R:A -> A39R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A39R:U -> A31R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A39R:U -> A40R:C: adjacent_5p upward } 0 17 {A40R:C -> A39R:U: adjacent_3p downward } 0 18 {A40R:C -> A41R:C: adjacent_5p upward } 0 19 {A41R:C -> A40R:C: adjacent_3p downward } 0 20 {A41R:C -> A42R:G: adjacent_5p } 0 21 {A42R:G -> A41R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A29R:G 0 1 A30R:G 0 2 A31R:A 0 3 A32R:U 0 4 A38R:A 0 5 A39R:U 0 6 A40R:C 0 7 A41R:C 0 [Edges] 0 {A29R:G -> A30R:G: adjacent_5p upward } 0 1 {A30R:G -> A29R:G: adjacent_3p downward } 0 2 {A29R:G -> A41R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A41R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A30R:G -> A31R:A: adjacent_5p upward } 0 5 {A31R:A -> A30R:G: adjacent_3p downward } 0 6 {A30R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A40R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A31R:A -> A32R:U: adjacent_5p upward } 0 9 {A32R:U -> A31R:A: adjacent_3p downward } 0 10 {A31R:A -> A39R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A39R:U -> A31R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A32R:U -> A38R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 13 {A38R:A -> A32R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 14 {A38R:A -> A39R:U: adjacent_5p upward } 0 15 {A39R:U -> A38R:A: adjacent_3p downward } 0 16 {A39R:U -> A40R:C: adjacent_5p upward } 0 17 {A40R:C -> A39R:U: adjacent_3p downward } 0 18 {A40R:C -> A41R:C: adjacent_5p upward } 0 19 {A41R:C -> A40R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A49R:U 0 1 A50R:C 0 2 A51R:C 0 3 A52R:G 0 4 A62R:C 0 5 A63R:G 0 6 A64R:G 0 7 A65R:A 0 [Edges] 0 {A49R:U -> A50R:C: adjacent_5p } 0 1 {A50R:C -> A49R:U: adjacent_3p } 0 2 {A49R:U -> A65R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A65R:A -> A49R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A50R:C -> A51R:C: adjacent_5p } 0 5 {A51R:C -> A50R:C: adjacent_3p } 0 6 {A50R:C -> A64R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A64R:G -> A50R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A51R:C -> A52R:G: adjacent_5p } 0 9 {A52R:G -> A51R:C: adjacent_3p } 0 10 {A51R:C -> A63R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A63R:G -> A51R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A52R:G -> A62R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A62R:C -> A52R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A52R:G -> A63R:G: outward } 0 15 {A63R:G -> A52R:G: outward } 0 16 {A62R:C -> A63R:G: adjacent_5p } 0 17 {A63R:G -> A62R:C: adjacent_3p } 0 18 {A63R:G -> A64R:G: adjacent_5p upward } 0 19 {A64R:G -> A63R:G: adjacent_3p downward } 0 20 {A64R:G -> A65R:A: adjacent_5p upward } 0 21 {A65R:A -> A64R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A50R:C 0 1 A51R:C 0 2 A52R:G 0 3 A53R:G 0 4 A61R:C 0 5 A62R:C 0 6 A63R:G 0 7 A64R:G 0 [Edges] 0 {A50R:C -> A51R:C: adjacent_5p } 0 1 {A51R:C -> A50R:C: adjacent_3p } 0 2 {A50R:C -> A64R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A64R:G -> A50R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A51R:C -> A52R:G: adjacent_5p } 0 5 {A52R:G -> A51R:C: adjacent_3p } 0 6 {A51R:C -> A63R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A63R:G -> A51R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A52R:G -> A53R:G: adjacent_5p upward } 0 9 {A53R:G -> A52R:G: adjacent_3p downward } 0 10 {A52R:G -> A62R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A62R:C -> A52R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A52R:G -> A63R:G: outward } 0 13 {A63R:G -> A52R:G: outward } 0 14 {A53R:G -> A61R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A61R:C -> A53R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A61R:C -> A62R:C: adjacent_5p } 0 17 {A62R:C -> A61R:C: adjacent_3p } 0 18 {A62R:C -> A63R:G: adjacent_5p } 0 19 {A63R:G -> A62R:C: adjacent_3p } 0 20 {A63R:G -> A64R:G: adjacent_5p upward } 0 21 {A64R:G -> A63R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 1R:G 0 1 2R:G 0 2 3R:U 0 3 4R:C 0 4 17R:G 0 5 18R:A 0 6 19R:C 0 7 20R:C 0 [Edges] 0 {1R:G -> 2R:G: adjacent_5p upward } 0 1 {2R:G -> 1R:G: adjacent_3p downward } 0 2 {1R:G -> 20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {20R:C -> 1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {2R:G -> 3R:U: adjacent_5p upward } 0 5 {3R:U -> 2R:G: adjacent_3p downward } 0 6 {2R:G -> 19R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {19R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {3R:U -> 4R:C: adjacent_5p upward } 0 9 {4R:C -> 3R:U: adjacent_3p downward } 0 10 {3R:U -> 18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {18R:A -> 3R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {4R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {17R:G -> 4R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {17R:G -> 18R:A: adjacent_5p upward } 0 15 {18R:A -> 17R:G: adjacent_3p downward } 0 16 {18R:A -> 19R:C: adjacent_5p upward } 0 17 {19R:C -> 18R:A: adjacent_3p downward } 0 18 {19R:C -> 20R:C: adjacent_5p upward } 0 19 {20R:C -> 19R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 2R:G 0 1 3R:U 0 2 4R:C 0 3 5R:A 0 4 16R:U 0 5 17R:G 0 6 18R:A 0 7 19R:C 0 [Edges] 0 {2R:G -> 3R:U: adjacent_5p upward } 0 1 {3R:U -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {19R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:U -> 4R:C: adjacent_5p upward } 0 5 {4R:C -> 3R:U: adjacent_3p downward } 0 6 {3R:U -> 18R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {18R:A -> 3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {4R:C -> 5R:A: adjacent_5p } 0 9 {5R:A -> 4R:C: adjacent_3p } 0 10 {4R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {17R:G -> 4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {5R:A -> 16R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {16R:U -> 5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {5R:A -> 17R:G: outward } 0 15 {17R:G -> 5R:A: outward } 0 16 {16R:U -> 17R:G: adjacent_5p upward } 0 17 {17R:G -> 16R:U: adjacent_3p downward } 0 18 {17R:G -> 18R:A: adjacent_5p upward } 0 19 {18R:A -> 17R:G: adjacent_3p downward } 0 20 {18R:A -> 19R:C: adjacent_5p upward } 0 21 {19R:C -> 18R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 3R:U 0 1 4R:C 0 2 5R:A 0 3 6R:G 0 4 15R:C 0 5 16R:U 0 6 17R:G 0 7 18R:A 0 [Edges] 0 {3R:U -> 4R:C: adjacent_5p upward } 0 1 {4R:C -> 3R:U: adjacent_3p downward } 0 2 {3R:U -> 18R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {18R:A -> 3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {4R:C -> 5R:A: adjacent_5p } 0 5 {5R:A -> 4R:C: adjacent_3p } 0 6 {4R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {17R:G -> 4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {5R:A -> 6R:G: adjacent_5p upward } 0 9 {6R:G -> 5R:A: adjacent_3p downward } 0 10 {5R:A -> 16R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {16R:U -> 5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {5R:A -> 17R:G: outward } 0 13 {17R:G -> 5R:A: outward } 0 14 {6R:G -> 15R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {15R:C -> 6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {15R:C -> 16R:U: adjacent_5p } 0 17 {16R:U -> 15R:C: adjacent_3p } 0 18 {16R:U -> 17R:G: adjacent_5p upward } 0 19 {17R:G -> 16R:U: adjacent_3p downward } 0 20 {17R:G -> 18R:A: adjacent_5p upward } 0 21 {18R:A -> 17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 4R:C 0 1 5R:A 0 2 6R:G 0 3 7R:U 0 4 14R:A 0 5 15R:C 0 6 16R:U 0 7 17R:G 0 [Edges] 0 {4R:C -> 5R:A: adjacent_5p } 0 1 {5R:A -> 4R:C: adjacent_3p } 0 2 {4R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {17R:G -> 4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {5R:A -> 6R:G: adjacent_5p upward } 0 5 {6R:G -> 5R:A: adjacent_3p downward } 0 6 {5R:A -> 16R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {16R:U -> 5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {5R:A -> 17R:G: outward } 0 9 {17R:G -> 5R:A: outward } 0 10 {6R:G -> 7R:U: adjacent_5p upward } 0 11 {7R:U -> 6R:G: adjacent_3p downward } 0 12 {6R:G -> 15R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {15R:C -> 6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {7R:U -> 14R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {14R:A -> 7R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {14R:A -> 15R:C: adjacent_5p upward } 0 17 {15R:C -> 14R:A: adjacent_3p downward } 0 18 {15R:C -> 16R:U: adjacent_5p } 0 19 {16R:U -> 15R:C: adjacent_3p } 0 20 {16R:U -> 17R:G: adjacent_5p upward } 0 21 {17R:G -> 16R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 5R:A 0 1 6R:G 0 2 7R:U 0 3 8R:G 0 4 13R:A 0 5 14R:A 0 6 15R:C 0 7 16R:U 0 [Edges] 0 {5R:A -> 6R:G: adjacent_5p upward } 0 1 {6R:G -> 5R:A: adjacent_3p downward } 0 2 {5R:A -> 16R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {16R:U -> 5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {6R:G -> 7R:U: adjacent_5p upward } 0 5 {7R:U -> 6R:G: adjacent_3p downward } 0 6 {6R:G -> 15R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {15R:C -> 6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {7R:U -> 8R:G: adjacent_5p upward } 0 9 {8R:G -> 7R:U: adjacent_3p downward } 0 10 {7R:U -> 14R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {14R:A -> 7R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {8R:G -> 13R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 13 {13R:A -> 8R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 14 {13R:A -> 14R:A: adjacent_5p upward } 0 15 {14R:A -> 13R:A: adjacent_3p downward } 0 16 {14R:A -> 15R:C: adjacent_5p upward } 0 17 {15R:C -> 14R:A: adjacent_3p downward } 0 18 {15R:C -> 16R:U: adjacent_5p } 0 19 {16R:U -> 15R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:U 0 3 A5R:G 0 4 A34R:C 0 5 A35R:A 0 6 A36R:C 0 7 A37R:C 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A37R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A37R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A36R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A36R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:U -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:U: adjacent_3p downward } 0 10 {A4R:U -> A35R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A35R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A34R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A5R:G -> A35R:A: outward } 0 15 {A35R:A -> A5R:G: outward } 0 16 {A34R:C -> A35R:A: adjacent_5p upward } 0 17 {A35R:A -> A34R:C: adjacent_3p downward } 0 18 {A35R:A -> A36R:C: adjacent_5p upward } 0 19 {A36R:C -> A35R:A: adjacent_3p downward } 0 20 {A36R:C -> A37R:C: adjacent_5p upward } 0 21 {A37R:C -> A36R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:U 0 2 A5R:G 0 3 A6R:A 0 4 A33R:U 0 5 A34R:C 0 6 A35R:A 0 7 A36R:C 0 [Edges] 0 {A3R:G -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A36R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A36R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:U -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:U: adjacent_3p downward } 0 6 {A4R:U -> A35R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A35R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:G -> A6R:A: adjacent_5p upward } 0 9 {A6R:A -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A34R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A35R:A: outward } 0 13 {A35R:A -> A5R:G: outward } 0 14 {A6R:A -> A33R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A33R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A33R:U -> A34R:C: adjacent_5p upward } 0 17 {A34R:C -> A33R:U: adjacent_3p downward } 0 18 {A34R:C -> A35R:A: adjacent_5p upward } 0 19 {A35R:A -> A34R:C: adjacent_3p downward } 0 20 {A35R:A -> A36R:C: adjacent_5p upward } 0 21 {A36R:C -> A35R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:U 0 2 A9R:C 0 3 A10R:C 0 4 A26R:G 0 5 A27R:G 0 6 A28R:A 0 7 A29R:G 0 [Edges] 0 {A7R:C -> A8R:U: adjacent_5p } 0 1 {A8R:U -> A7R:C: adjacent_3p } 0 2 {A7R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A29R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:U -> A9R:C: adjacent_5p upward } 0 5 {A9R:C -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A28R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:C -> A10R:C: adjacent_5p upward } 0 9 {A10R:C -> A9R:C: adjacent_3p downward } 0 10 {A9R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A27R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A26R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A26R:G -> A27R:G: adjacent_5p upward } 0 15 {A27R:G -> A26R:G: adjacent_3p downward } 0 16 {A27R:G -> A28R:A: adjacent_5p upward } 0 17 {A28R:A -> A27R:G: adjacent_3p downward } 0 18 {A28R:A -> A29R:G: adjacent_5p upward } 0 19 {A29R:G -> A28R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A14R:G 0 1 A15R:G 0 2 A16R:U 0 3 A17R:C 0 4 A22R:G 0 5 A23R:A 0 6 A24R:C 0 7 A25R:C 0 [Edges] 0 {A14R:G -> A15R:G: adjacent_5p upward } 0 1 {A15R:G -> A14R:G: adjacent_3p downward } 0 2 {A14R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A15R:G -> A16R:U: adjacent_5p upward } 0 5 {A16R:U -> A15R:G: adjacent_3p downward } 0 6 {A15R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A24R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A16R:U -> A17R:C: adjacent_5p upward } 0 9 {A17R:C -> A16R:U: adjacent_3p downward } 0 10 {A16R:U -> A23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A23R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A17R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A22R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A22R:G -> A23R:A: adjacent_5p upward } 0 15 {A23R:A -> A22R:G: adjacent_3p downward } 0 16 {A23R:A -> A24R:C: adjacent_5p upward } 0 17 {A24R:C -> A23R:A: adjacent_3p downward } 0 18 {A24R:C -> A25R:C: adjacent_5p upward } 0 19 {A25R:C -> A24R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A15R:G 0 1 A16R:U 0 2 A17R:C 0 3 A18R:G 0 4 A21R:A 0 5 A22R:G 0 6 A23R:A 0 7 A24R:C 0 [Edges] 0 {A15R:G -> A16R:U: adjacent_5p upward } 0 1 {A16R:U -> A15R:G: adjacent_3p downward } 0 2 {A15R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A16R:U -> A17R:C: adjacent_5p upward } 0 5 {A17R:C -> A16R:U: adjacent_3p downward } 0 6 {A16R:U -> A23R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A23R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A17R:C -> A18R:G: adjacent_5p upward } 0 9 {A18R:G -> A17R:C: adjacent_3p downward } 0 10 {A17R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A22R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A18R:G -> A21R:A: pairing antiparallel trans one_hbond Ww/Hh } 0 13 {A21R:A -> A18R:G: pairing antiparallel trans one_hbond Hh/Ww } 0 14 {A21R:A -> A22R:G: adjacent_5p upward } 0 15 {A22R:G -> A21R:A: adjacent_3p downward } 0 16 {A22R:G -> A23R:A: adjacent_5p upward } 0 17 {A23R:A -> A22R:G: adjacent_3p downward } 0 18 {A23R:A -> A24R:C: adjacent_5p upward } 0 19 {A24R:C -> A23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B276R:G 0 1 B277R:G 0 2 B278R:C 0 3 B279R:G 0 4 B302R:U 0 5 B303R:G 0 6 B304R:U 0 7 B305R:A 0 [Edges] 0 {B276R:G -> B277R:G: adjacent_5p upward } 0 1 {B277R:G -> B276R:G: adjacent_3p downward } 0 2 {B276R:G -> B305R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {B305R:A -> B276R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {B277R:G -> B278R:C: adjacent_5p upward } 0 5 {B278R:C -> B277R:G: adjacent_3p downward } 0 6 {B277R:G -> B304R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B304R:U -> B277R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B278R:C -> B279R:G: adjacent_5p } 0 9 {B279R:G -> B278R:C: adjacent_3p } 0 10 {B278R:C -> B303R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B303R:G -> B278R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B279R:G -> B302R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B302R:U -> B279R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {B302R:U -> B303R:G: adjacent_5p upward } 0 15 {B303R:G -> B302R:U: adjacent_3p downward } 0 16 {B303R:G -> B304R:U: adjacent_5p } 0 17 {B304R:U -> B303R:G: adjacent_3p } 0 18 {B304R:U -> B305R:A: adjacent_5p } 0 19 {B305R:A -> B304R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B277R:G 0 1 B278R:C 0 2 B279R:G 0 3 B280R:G 0 4 B301R:C 0 5 B302R:U 0 6 B303R:G 0 7 B304R:U 0 [Edges] 0 {B277R:G -> B278R:C: adjacent_5p upward } 0 1 {B278R:C -> B277R:G: adjacent_3p downward } 0 2 {B277R:G -> B304R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B304R:U -> B277R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B278R:C -> B279R:G: adjacent_5p } 0 5 {B279R:G -> B278R:C: adjacent_3p } 0 6 {B278R:C -> B303R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B303R:G -> B278R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B279R:G -> B280R:G: adjacent_5p upward } 0 9 {B280R:G -> B279R:G: adjacent_3p downward } 0 10 {B279R:G -> B302R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B302R:U -> B279R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {B280R:G -> B301R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B301R:C -> B280R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B301R:C -> B302R:U: adjacent_5p upward } 0 15 {B302R:U -> B301R:C: adjacent_3p downward } 0 16 {B302R:U -> B303R:G: adjacent_5p upward } 0 17 {B303R:G -> B302R:U: adjacent_3p downward } 0 18 {B303R:G -> B304R:U: adjacent_5p } 0 19 {B304R:U -> B303R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B278R:C 0 1 B279R:G 0 2 B280R:G 0 3 B281R:U 0 4 B300R:U 0 5 B301R:C 0 6 B302R:U 0 7 B303R:G 0 [Edges] 0 {B278R:C -> B279R:G: adjacent_5p } 0 1 {B279R:G -> B278R:C: adjacent_3p } 0 2 {B278R:C -> B303R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B303R:G -> B278R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B279R:G -> B280R:G: adjacent_5p upward } 0 5 {B280R:G -> B279R:G: adjacent_3p downward } 0 6 {B279R:G -> B302R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B302R:U -> B279R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B280R:G -> B281R:U: adjacent_5p upward } 0 9 {B281R:U -> B280R:G: adjacent_3p downward } 0 10 {B280R:G -> B301R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B301R:C -> B280R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B281R:U -> B300R:U: pairing antiparallel cis XVI Ww/Ws } 0 13 {B300R:U -> B281R:U: pairing antiparallel cis XVI Ws/Ww } 0 14 {B300R:U -> B301R:C: adjacent_5p upward } 0 15 {B301R:C -> B300R:U: adjacent_3p downward } 0 16 {B301R:C -> B302R:U: adjacent_5p upward } 0 17 {B302R:U -> B301R:C: adjacent_3p downward } 0 18 {B302R:U -> B303R:G: adjacent_5p upward } 0 19 {B303R:G -> B302R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B283R:C 0 1 B284R:U 0 2 B285R:A 0 3 B286R:G 0 4 B295R:C 0 5 B296R:U 0 6 B297R:A 0 7 B298R:G 0 [Edges] 0 {B283R:C -> B284R:U: adjacent_5p upward } 0 1 {B284R:U -> B283R:C: adjacent_3p downward } 0 2 {B283R:C -> B298R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B298R:G -> B283R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B284R:U -> B285R:A: adjacent_5p upward } 0 5 {B285R:A -> B284R:U: adjacent_3p downward } 0 6 {B284R:U -> B297R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B297R:A -> B284R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B285R:A -> B286R:G: adjacent_5p upward } 0 9 {B286R:G -> B285R:A: adjacent_3p downward } 0 10 {B285R:A -> B296R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B296R:U -> B285R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B285R:A -> B297R:A: outward } 0 13 {B297R:A -> B285R:A: outward } 0 14 {B286R:G -> B295R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B295R:C -> B286R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B295R:C -> B296R:U: adjacent_5p upward } 0 17 {B296R:U -> B295R:C: adjacent_3p downward } 0 18 {B296R:U -> B297R:A: adjacent_5p upward } 0 19 {B297R:A -> B296R:U: adjacent_3p downward } 0 20 {B297R:A -> B298R:G: adjacent_5p upward } 0 21 {B298R:G -> B297R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B284R:U 0 1 B285R:A 0 2 B286R:G 0 3 B287R:U 0 4 B294R:A 0 5 B295R:C 0 6 B296R:U 0 7 B297R:A 0 [Edges] 0 {B284R:U -> B285R:A: adjacent_5p upward } 0 1 {B285R:A -> B284R:U: adjacent_3p downward } 0 2 {B284R:U -> B297R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B297R:A -> B284R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B285R:A -> B286R:G: adjacent_5p upward } 0 5 {B286R:G -> B285R:A: adjacent_3p downward } 0 6 {B285R:A -> B296R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B296R:U -> B285R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B285R:A -> B297R:A: outward } 0 9 {B297R:A -> B285R:A: outward } 0 10 {B286R:G -> B287R:U: adjacent_5p upward } 0 11 {B287R:U -> B286R:G: adjacent_3p downward } 0 12 {B286R:G -> B295R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B295R:C -> B286R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B287R:U -> B294R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B294R:A -> B287R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B294R:A -> B295R:C: adjacent_5p upward } 0 17 {B295R:C -> B294R:A: adjacent_3p downward } 0 18 {B295R:C -> B296R:U: adjacent_5p upward } 0 19 {B296R:U -> B295R:C: adjacent_3p downward } 0 20 {B296R:U -> B297R:A: adjacent_5p upward } 0 21 {B297R:A -> B296R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B285R:A 0 1 B286R:G 0 2 B287R:U 0 3 B288R:U 0 4 B293R:A 0 5 B294R:A 0 6 B295R:C 0 7 B296R:U 0 [Edges] 0 {B285R:A -> B286R:G: adjacent_5p upward } 0 1 {B286R:G -> B285R:A: adjacent_3p downward } 0 2 {B285R:A -> B296R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B296R:U -> B285R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B286R:G -> B287R:U: adjacent_5p upward } 0 5 {B287R:U -> B286R:G: adjacent_3p downward } 0 6 {B286R:G -> B295R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B295R:C -> B286R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B287R:U -> B288R:U: adjacent_5p upward } 0 9 {B288R:U -> B287R:U: adjacent_3p downward } 0 10 {B287R:U -> B294R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B294R:A -> B287R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B288R:U -> B293R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B293R:A -> B288R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B293R:A -> B294R:A: adjacent_5p upward } 0 15 {B294R:A -> B293R:A: adjacent_3p downward } 0 16 {B294R:A -> B295R:C: adjacent_5p upward } 0 17 {B295R:C -> B294R:A: adjacent_3p downward } 0 18 {B295R:C -> B296R:U: adjacent_5p upward } 0 19 {B296R:U -> B295R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B286R:G 0 1 B287R:U 0 2 B288R:U 0 3 B289R:G 0 4 B292R:A 0 5 B293R:A 0 6 B294R:A 0 7 B295R:C 0 [Edges] 0 {B286R:G -> B287R:U: adjacent_5p upward } 0 1 {B287R:U -> B286R:G: adjacent_3p downward } 0 2 {B286R:G -> B295R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B295R:C -> B286R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B287R:U -> B288R:U: adjacent_5p upward } 0 5 {B288R:U -> B287R:U: adjacent_3p downward } 0 6 {B287R:U -> B294R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B294R:A -> B287R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B288R:U -> B289R:G: adjacent_5p upward } 0 9 {B289R:G -> B288R:U: adjacent_3p downward } 0 10 {B288R:U -> B293R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B293R:A -> B288R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B289R:G -> B292R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {B292R:A -> B289R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {B292R:A -> B293R:A: adjacent_5p upward } 0 15 {B293R:A -> B292R:A: adjacent_3p downward } 0 16 {B293R:A -> B294R:A: adjacent_5p upward } 0 17 {B294R:A -> B293R:A: adjacent_3p downward } 0 18 {B294R:A -> B295R:C: adjacent_5p upward } 0 19 {B295R:C -> B294R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B310R:G 0 1 B311R:C 0 2 B312R:G 0 3 B313R:G 0 4 B349R:C 0 5 B350R:C 0 6 B351R:G 0 7 B352R:C 0 [Edges] 0 {B310R:G -> B311R:C: adjacent_5p upward } 0 1 {B311R:C -> B310R:G: adjacent_3p downward } 0 2 {B310R:G -> B352R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B352R:C -> B310R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B311R:C -> B312R:G: adjacent_5p upward } 0 5 {B312R:G -> B311R:C: adjacent_3p downward } 0 6 {B311R:C -> B351R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B351R:G -> B311R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B312R:G -> B313R:G: adjacent_5p upward } 0 9 {B313R:G -> B312R:G: adjacent_3p downward } 0 10 {B312R:G -> B350R:C: pairing antiparallel cis Ww/Ww } 0 11 {B350R:C -> B312R:G: pairing antiparallel cis Ww/Ww } 0 12 {B312R:G -> B351R:G: outward } 0 13 {B351R:G -> B312R:G: outward } 0 14 {B313R:G -> B349R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B349R:C -> B313R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B349R:C -> B350R:C: adjacent_5p upward } 0 17 {B350R:C -> B349R:C: adjacent_3p downward } 0 18 {B350R:C -> B351R:G: adjacent_5p } 0 19 {B351R:G -> B350R:C: adjacent_3p } 0 20 {B351R:G -> B352R:C: adjacent_5p upward } 0 21 {B352R:C -> B351R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B320R:G 0 1 B321R:G 0 2 B322R:U 0 3 B323R:G 0 4 B342R:C 0 5 B343R:A 0 6 B344R:C 0 7 B345R:C 0 [Edges] 0 {B320R:G -> B321R:G: adjacent_5p upward } 0 1 {B321R:G -> B320R:G: adjacent_3p downward } 0 2 {B320R:G -> B345R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B345R:C -> B320R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B321R:G -> B322R:U: adjacent_5p upward } 0 5 {B322R:U -> B321R:G: adjacent_3p downward } 0 6 {B321R:G -> B344R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B344R:C -> B321R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B322R:U -> B323R:G: adjacent_5p } 0 9 {B323R:G -> B322R:U: adjacent_3p } 0 10 {B322R:U -> B343R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B343R:A -> B322R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B323R:G -> B342R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B342R:C -> B323R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B342R:C -> B343R:A: adjacent_5p upward } 0 15 {B343R:A -> B342R:C: adjacent_3p downward } 0 16 {B343R:A -> B344R:C: adjacent_5p upward } 0 17 {B344R:C -> B343R:A: adjacent_3p downward } 0 18 {B344R:C -> B345R:C: adjacent_5p upward } 0 19 {B345R:C -> B344R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B324R:G 0 1 B325R:A 0 2 B326R:A 0 3 B327R:C 0 4 B334R:G 0 5 B335R:U 0 6 B336R:U 0 7 B337R:C 0 [Edges] 0 {B324R:G -> B325R:A: adjacent_5p upward } 0 1 {B325R:A -> B324R:G: adjacent_3p downward } 0 2 {B324R:G -> B337R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B337R:C -> B324R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B325R:A -> B326R:A: adjacent_5p upward } 0 5 {B326R:A -> B325R:A: adjacent_3p downward } 0 6 {B325R:A -> B335R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {B335R:U -> B325R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {B325R:A -> B336R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B336R:U -> B325R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B326R:A -> B327R:C: adjacent_5p upward } 0 11 {B327R:C -> B326R:A: adjacent_3p downward } 0 12 {B326R:A -> B335R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B335R:U -> B326R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B327R:C -> B334R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B334R:G -> B327R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B334R:G -> B335R:U: adjacent_5p upward } 0 17 {B335R:U -> B334R:G: adjacent_3p downward } 0 18 {B335R:U -> B336R:U: adjacent_5p upward } 0 19 {B336R:U -> B335R:U: adjacent_3p downward } 0 20 {B336R:U -> B337R:C: adjacent_5p upward } 0 21 {B337R:C -> B336R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . 7 13 . 17 . 18 . 6 . 9 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B325R:A 0 1 B326R:A 0 2 B327R:C 0 3 B328R:U 0 4 B333R:A 0 5 B334R:G 0 6 B335R:U 0 7 B336R:U 0 [Edges] 0 {B325R:A -> B326R:A: adjacent_5p upward } 0 1 {B326R:A -> B325R:A: adjacent_3p downward } 0 2 {B325R:A -> B335R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B335R:U -> B325R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {B325R:A -> B336R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {B336R:U -> B325R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {B326R:A -> B327R:C: adjacent_5p upward } 0 7 {B327R:C -> B326R:A: adjacent_3p downward } 0 8 {B326R:A -> B335R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B335R:U -> B326R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B327R:C -> B328R:U: adjacent_5p } 0 11 {B328R:U -> B327R:C: adjacent_3p } 0 12 {B327R:C -> B334R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B334R:G -> B327R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B328R:U -> B333R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B333R:A -> B328R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B333R:A -> B334R:G: adjacent_5p upward } 0 17 {B334R:G -> B333R:A: adjacent_3p downward } 0 18 {B334R:G -> B335R:U: adjacent_5p upward } 0 19 {B335R:U -> B334R:G: adjacent_3p downward } 0 20 {B335R:U -> B336R:U: adjacent_5p upward } 0 21 {B336R:U -> B335R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 . 2 . 7 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 3 9 . . . 19 . 20 7 5 . . . . . 21 . [GraphModel] [Vertices] 0 B353R:A 0 1 B354R:A 0 2 B355R:C 0 3 B356R:C 0 4 B373R:G 0 5 B374R:G 0 6 B375R:U 0 7 B376R:U 0 [Edges] 0 {B353R:A -> B354R:A: adjacent_5p upward } 0 1 {B354R:A -> B353R:A: adjacent_3p downward } 0 2 {B353R:A -> B376R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B376R:U -> B353R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B354R:A -> B355R:C: adjacent_5p upward } 0 5 {B355R:C -> B354R:A: adjacent_3p downward } 0 6 {B354R:A -> B375R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B375R:U -> B354R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B355R:C -> B356R:C: adjacent_5p upward } 0 9 {B356R:C -> B355R:C: adjacent_3p downward } 0 10 {B355R:C -> B374R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B374R:G -> B355R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B356R:C -> B373R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B373R:G -> B356R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B373R:G -> B374R:G: adjacent_5p upward } 0 15 {B374R:G -> B373R:G: adjacent_3p downward } 0 16 {B374R:G -> B375R:U: adjacent_5p upward } 0 17 {B375R:U -> B374R:G: adjacent_3p downward } 0 18 {B375R:U -> B376R:U: adjacent_5p upward } 0 19 {B376R:U -> B375R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B354R:A 0 1 B355R:C 0 2 B356R:C 0 3 B357R:C 0 4 B372R:G 0 5 B373R:G 0 6 B374R:G 0 7 B375R:U 0 [Edges] 0 {B354R:A -> B355R:C: adjacent_5p upward } 0 1 {B355R:C -> B354R:A: adjacent_3p downward } 0 2 {B354R:A -> B375R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B375R:U -> B354R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B355R:C -> B356R:C: adjacent_5p upward } 0 5 {B356R:C -> B355R:C: adjacent_3p downward } 0 6 {B355R:C -> B374R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B374R:G -> B355R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B356R:C -> B357R:C: adjacent_5p } 0 9 {B357R:C -> B356R:C: adjacent_3p } 0 10 {B356R:C -> B373R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B373R:G -> B356R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B357R:C -> B372R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B372R:G -> B357R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B372R:G -> B373R:G: adjacent_5p upward } 0 15 {B373R:G -> B372R:G: adjacent_3p downward } 0 16 {B373R:G -> B374R:G: adjacent_5p upward } 0 17 {B374R:G -> B373R:G: adjacent_3p downward } 0 18 {B374R:G -> B375R:U: adjacent_5p upward } 0 19 {B375R:U -> B374R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B355R:C 0 1 B356R:C 0 2 B357R:C 0 3 B358R:U 0 4 B371R:A 0 5 B372R:G 0 6 B373R:G 0 7 B374R:G 0 [Edges] 0 {B355R:C -> B356R:C: adjacent_5p upward } 0 1 {B356R:C -> B355R:C: adjacent_3p downward } 0 2 {B355R:C -> B374R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B374R:G -> B355R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B356R:C -> B357R:C: adjacent_5p } 0 5 {B357R:C -> B356R:C: adjacent_3p } 0 6 {B356R:C -> B373R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B373R:G -> B356R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B357R:C -> B358R:U: adjacent_5p } 0 9 {B358R:U -> B357R:C: adjacent_3p } 0 10 {B357R:C -> B372R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B372R:G -> B357R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B358R:U -> B371R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B371R:A -> B358R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B371R:A -> B372R:G: adjacent_5p upward } 0 15 {B372R:G -> B371R:A: adjacent_3p downward } 0 16 {B372R:G -> B373R:G: adjacent_5p upward } 0 17 {B373R:G -> B372R:G: adjacent_3p downward } 0 18 {B373R:G -> B374R:G: adjacent_5p upward } 0 19 {B374R:G -> B373R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B356R:C 0 1 B357R:C 0 2 B358R:U 0 3 B359R:G 0 4 B370R:C 0 5 B371R:A 0 6 B372R:G 0 7 B373R:G 0 [Edges] 0 {B356R:C -> B357R:C: adjacent_5p } 0 1 {B357R:C -> B356R:C: adjacent_3p } 0 2 {B356R:C -> B373R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B373R:G -> B356R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B357R:C -> B358R:U: adjacent_5p } 0 5 {B358R:U -> B357R:C: adjacent_3p } 0 6 {B357R:C -> B372R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B372R:G -> B357R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B358R:U -> B359R:G: adjacent_5p upward } 0 9 {B359R:G -> B358R:U: adjacent_3p downward } 0 10 {B358R:U -> B371R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B371R:A -> B358R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B359R:G -> B370R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B370R:C -> B359R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B370R:C -> B371R:A: adjacent_5p } 0 15 {B371R:A -> B370R:C: adjacent_3p } 0 16 {B371R:A -> B372R:G: adjacent_5p upward } 0 17 {B372R:G -> B371R:A: adjacent_3p downward } 0 18 {B372R:G -> B373R:G: adjacent_5p upward } 0 19 {B373R:G -> B372R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B357R:C 0 1 B358R:U 0 2 B359R:G 0 3 B360R:G 0 4 B369R:C 0 5 B370R:C 0 6 B371R:A 0 7 B372R:G 0 [Edges] 0 {B357R:C -> B358R:U: adjacent_5p } 0 1 {B358R:U -> B357R:C: adjacent_3p } 0 2 {B357R:C -> B372R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B372R:G -> B357R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B358R:U -> B359R:G: adjacent_5p upward } 0 5 {B359R:G -> B358R:U: adjacent_3p downward } 0 6 {B358R:U -> B371R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B371R:A -> B358R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B359R:G -> B360R:G: adjacent_5p upward } 0 9 {B360R:G -> B359R:G: adjacent_3p downward } 0 10 {B359R:G -> B370R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B370R:C -> B359R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B360R:G -> B369R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B369R:C -> B360R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B369R:C -> B370R:C: adjacent_5p upward } 0 15 {B370R:C -> B369R:C: adjacent_3p downward } 0 16 {B370R:C -> B371R:A: adjacent_5p } 0 17 {B371R:A -> B370R:C: adjacent_3p } 0 18 {B371R:A -> B372R:G: adjacent_5p upward } 0 19 {B372R:G -> B371R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B358R:U 0 1 B359R:G 0 2 B360R:G 0 3 B361R:G 0 4 B368R:C 0 5 B369R:C 0 6 B370R:C 0 7 B371R:A 0 [Edges] 0 {B358R:U -> B359R:G: adjacent_5p upward } 0 1 {B359R:G -> B358R:U: adjacent_3p downward } 0 2 {B358R:U -> B371R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B371R:A -> B358R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B359R:G -> B360R:G: adjacent_5p upward } 0 5 {B360R:G -> B359R:G: adjacent_3p downward } 0 6 {B359R:G -> B370R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B370R:C -> B359R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B360R:G -> B361R:G: adjacent_5p upward } 0 9 {B361R:G -> B360R:G: adjacent_3p downward } 0 10 {B360R:G -> B369R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B369R:C -> B360R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B361R:G -> B368R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B368R:C -> B361R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B368R:C -> B369R:C: adjacent_5p upward } 0 15 {B369R:C -> B368R:C: adjacent_3p downward } 0 16 {B369R:C -> B370R:C: adjacent_5p upward } 0 17 {B370R:C -> B369R:C: adjacent_3p downward } 0 18 {B370R:C -> B371R:A: adjacent_5p } 0 19 {B371R:A -> B370R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B359R:G 0 1 B360R:G 0 2 B361R:G 0 3 B362R:A 0 4 B367R:U 0 5 B368R:C 0 6 B369R:C 0 7 B370R:C 0 [Edges] 0 {B359R:G -> B360R:G: adjacent_5p upward } 0 1 {B360R:G -> B359R:G: adjacent_3p downward } 0 2 {B359R:G -> B370R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B370R:C -> B359R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B360R:G -> B361R:G: adjacent_5p upward } 0 5 {B361R:G -> B360R:G: adjacent_3p downward } 0 6 {B360R:G -> B369R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B369R:C -> B360R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B361R:G -> B362R:A: adjacent_5p } 0 9 {B362R:A -> B361R:G: adjacent_3p } 0 10 {B361R:G -> B368R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B368R:C -> B361R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B362R:A -> B367R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B367R:U -> B362R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B367R:U -> B368R:C: adjacent_5p upward } 0 15 {B368R:C -> B367R:U: adjacent_3p downward } 0 16 {B368R:C -> B369R:C: adjacent_5p upward } 0 17 {B369R:C -> B368R:C: adjacent_3p downward } 0 18 {B369R:C -> B370R:C: adjacent_5p upward } 0 19 {B370R:C -> B369R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A15R:G 0 1 A16R:G 0 2 A17R:A 0 3 A18R:C 0 4 A78R:G 0 5 A79R:U 0 6 A80R:C 0 7 A81R:C 0 [Edges] 0 {A15R:G -> A16R:G: adjacent_5p upward } 0 1 {A16R:G -> A15R:G: adjacent_3p downward } 0 2 {A15R:G -> A81R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A81R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A16R:G -> A17R:A: adjacent_5p upward } 0 5 {A17R:A -> A16R:G: adjacent_3p downward } 0 6 {A16R:G -> A80R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A80R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A17R:A -> A18R:C: adjacent_5p upward } 0 9 {A18R:C -> A17R:A: adjacent_3p downward } 0 10 {A17R:A -> A79R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A79R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A18R:C -> A78R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A78R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A78R:G -> A79R:U: adjacent_5p upward } 0 15 {A79R:U -> A78R:G: adjacent_3p downward } 0 16 {A79R:U -> A80R:C: adjacent_5p upward } 0 17 {A80R:C -> A79R:U: adjacent_3p downward } 0 18 {A80R:C -> A81R:C: adjacent_5p upward } 0 19 {A81R:C -> A80R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A16R:G 0 1 A17R:A 0 2 A18R:C 0 3 A19R:A 0 4 A77R:U 0 5 A78R:G 0 6 A79R:U 0 7 A80R:C 0 [Edges] 0 {A16R:G -> A17R:A: adjacent_5p upward } 0 1 {A17R:A -> A16R:G: adjacent_3p downward } 0 2 {A16R:G -> A80R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A80R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A17R:A -> A18R:C: adjacent_5p upward } 0 5 {A18R:C -> A17R:A: adjacent_3p downward } 0 6 {A17R:A -> A79R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A79R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A18R:C -> A19R:A: adjacent_5p upward } 0 9 {A19R:A -> A18R:C: adjacent_3p downward } 0 10 {A18R:C -> A78R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A78R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A19R:A -> A77R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A77R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A19R:A -> A78R:G: outward } 0 15 {A78R:G -> A19R:A: outward } 0 16 {A77R:U -> A78R:G: adjacent_5p upward } 0 17 {A78R:G -> A77R:U: adjacent_3p downward } 0 18 {A78R:G -> A79R:U: adjacent_5p upward } 0 19 {A79R:U -> A78R:G: adjacent_3p downward } 0 20 {A79R:U -> A80R:C: adjacent_5p upward } 0 21 {A80R:C -> A79R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A17R:A 0 1 A18R:C 0 2 A19R:A 0 3 A20R:U 0 4 A76R:A 0 5 A77R:U 0 6 A78R:G 0 7 A79R:U 0 [Edges] 0 {A17R:A -> A18R:C: adjacent_5p upward } 0 1 {A18R:C -> A17R:A: adjacent_3p downward } 0 2 {A17R:A -> A79R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A79R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A18R:C -> A19R:A: adjacent_5p upward } 0 5 {A19R:A -> A18R:C: adjacent_3p downward } 0 6 {A18R:C -> A78R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A78R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A19R:A -> A20R:U: adjacent_5p upward } 0 9 {A20R:U -> A19R:A: adjacent_3p downward } 0 10 {A19R:A -> A77R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A77R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A19R:A -> A78R:G: outward } 0 13 {A78R:G -> A19R:A: outward } 0 14 {A20R:U -> A76R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A76R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A76R:A -> A77R:U: adjacent_5p upward } 0 17 {A77R:U -> A76R:A: adjacent_3p downward } 0 18 {A77R:U -> A78R:G: adjacent_5p upward } 0 19 {A78R:G -> A77R:U: adjacent_3p downward } 0 20 {A78R:G -> A79R:U: adjacent_5p upward } 0 21 {A79R:U -> A78R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A18R:C 0 1 A19R:A 0 2 A20R:U 0 3 A21R:A 0 4 A75R:U 0 5 A76R:A 0 6 A77R:U 0 7 A78R:G 0 [Edges] 0 {A18R:C -> A19R:A: adjacent_5p upward } 0 1 {A19R:A -> A18R:C: adjacent_3p downward } 0 2 {A18R:C -> A78R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A78R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A19R:A -> A20R:U: adjacent_5p upward } 0 5 {A20R:U -> A19R:A: adjacent_3p downward } 0 6 {A19R:A -> A77R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A77R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A19R:A -> A78R:G: outward } 0 9 {A78R:G -> A19R:A: outward } 0 10 {A20R:U -> A21R:A: adjacent_5p upward } 0 11 {A21R:A -> A20R:U: adjacent_3p downward } 0 12 {A20R:U -> A76R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A76R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A21R:A -> A75R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A75R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A21R:A -> A76R:A: outward } 0 17 {A76R:A -> A21R:A: outward } 0 18 {A75R:U -> A76R:A: adjacent_5p upward } 0 19 {A76R:A -> A75R:U: adjacent_3p downward } 0 20 {A76R:A -> A77R:U: adjacent_5p upward } 0 21 {A77R:U -> A76R:A: adjacent_3p downward } 0 22 {A77R:U -> A78R:G: adjacent_5p upward } 0 23 {A78R:G -> A77R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A25R:U 0 1 A26R:C 0 2 A27R:G 0 3 A28R:C 0 4 A42R:G 0 5 A43R:C 0 6 A44R:A 0 7 A45R:A 0 [Edges] 0 {A25R:U -> A26R:C: adjacent_5p upward } 0 1 {A26R:C -> A25R:U: adjacent_3p downward } 0 2 {A25R:U -> A45R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A45R:A -> A25R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A26R:C -> A27R:G: adjacent_5p } 0 5 {A27R:G -> A26R:C: adjacent_3p } 0 6 {A27R:G -> A28R:C: adjacent_5p upward } 0 7 {A28R:C -> A27R:G: adjacent_3p downward } 0 8 {A27R:G -> A43R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A43R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A27R:G -> A44R:A: outward } 0 11 {A44R:A -> A27R:G: outward } 0 12 {A28R:C -> A42R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A42R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A42R:G -> A43R:C: adjacent_5p upward } 0 15 {A43R:C -> A42R:G: adjacent_3p downward } 0 16 {A43R:C -> A44R:A: adjacent_5p upward } 0 17 {A44R:A -> A43R:C: adjacent_3p downward } 0 18 {A44R:A -> A45R:A: adjacent_5p upward } 0 19 {A45R:A -> A44R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 10 . 3 . . 7 . 12 . . . 4 . . . 13 . 14 . . 5 . . 9 . 15 . 16 . 6 . . 11 . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A27R:G 0 1 A28R:C 0 2 A29R:G 0 3 A30R:U 0 4 A40R:A 0 5 A41R:C 0 6 A42R:G 0 7 A43R:C 0 [Edges] 0 {A27R:G -> A28R:C: adjacent_5p upward } 0 1 {A28R:C -> A27R:G: adjacent_3p downward } 0 2 {A27R:G -> A43R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A43R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A28R:C -> A29R:G: adjacent_5p upward } 0 5 {A29R:G -> A28R:C: adjacent_3p downward } 0 6 {A28R:C -> A42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A42R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A29R:G -> A30R:U: adjacent_5p upward } 0 9 {A30R:U -> A29R:G: adjacent_3p downward } 0 10 {A29R:G -> A41R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A41R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A29R:G -> A42R:G: outward } 0 13 {A42R:G -> A29R:G: outward } 0 14 {A30R:U -> A40R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A40R:A -> A30R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A40R:A -> A41R:C: adjacent_5p upward } 0 17 {A41R:C -> A40R:A: adjacent_3p downward } 0 18 {A41R:C -> A42R:G: adjacent_5p upward } 0 19 {A42R:G -> A41R:C: adjacent_3p downward } 0 20 {A42R:G -> A43R:C: adjacent_5p upward } 0 21 {A43R:C -> A42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A28R:C 0 1 A29R:G 0 2 A30R:U 0 3 A31R:G 0 4 A39R:C 0 5 A40R:A 0 6 A41R:C 0 7 A42R:G 0 [Edges] 0 {A28R:C -> A29R:G: adjacent_5p upward } 0 1 {A29R:G -> A28R:C: adjacent_3p downward } 0 2 {A28R:C -> A42R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A42R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A29R:G -> A30R:U: adjacent_5p upward } 0 5 {A30R:U -> A29R:G: adjacent_3p downward } 0 6 {A29R:G -> A41R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A41R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A29R:G -> A42R:G: outward } 0 9 {A42R:G -> A29R:G: outward } 0 10 {A30R:U -> A31R:G: adjacent_5p upward } 0 11 {A31R:G -> A30R:U: adjacent_3p downward } 0 12 {A30R:U -> A40R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A40R:A -> A30R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A31R:G -> A39R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A39R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A31R:G -> A40R:A: outward } 0 17 {A40R:A -> A31R:G: outward } 0 18 {A39R:C -> A40R:A: adjacent_5p } 0 19 {A40R:A -> A39R:C: adjacent_3p } 0 20 {A40R:A -> A41R:C: adjacent_5p upward } 0 21 {A41R:C -> A40R:A: adjacent_3p downward } 0 22 {A41R:C -> A42R:G: adjacent_5p upward } 0 23 {A42R:G -> A41R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A54R:C 0 1 A55R:G 0 2 A56R:G 0 3 A57R:G 0 4 A69R:U 0 5 A70R:C 0 6 A71R:C 0 7 A72R:G 0 [Edges] 0 {A54R:C -> A55R:G: adjacent_5p } 0 1 {A55R:G -> A54R:C: adjacent_3p } 0 2 {A54R:C -> A72R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A72R:G -> A54R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A55R:G -> A56R:G: adjacent_5p upward } 0 5 {A56R:G -> A55R:G: adjacent_3p downward } 0 6 {A55R:G -> A71R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A71R:C -> A55R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A55R:G -> A72R:G: outward } 0 9 {A72R:G -> A55R:G: outward } 0 10 {A56R:G -> A57R:G: adjacent_5p upward } 0 11 {A57R:G -> A56R:G: adjacent_3p downward } 0 12 {A56R:G -> A70R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A70R:C -> A56R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A57R:G -> A69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A69R:U -> A57R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A69R:U -> A70R:C: adjacent_5p } 0 17 {A70R:C -> A69R:U: adjacent_3p } 0 18 {A70R:C -> A71R:C: adjacent_5p upward } 0 19 {A71R:C -> A70R:C: adjacent_3p downward } 0 20 {A71R:C -> A72R:G: adjacent_5p upward } 0 21 {A72R:G -> A71R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A55R:G 0 1 A56R:G 0 2 A57R:G 0 3 A58R:C 0 4 A68R:G 0 5 A69R:U 0 6 A70R:C 0 7 A71R:C 0 [Edges] 0 {A55R:G -> A56R:G: adjacent_5p upward } 0 1 {A56R:G -> A55R:G: adjacent_3p downward } 0 2 {A55R:G -> A71R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A71R:C -> A55R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A56R:G -> A57R:G: adjacent_5p upward } 0 5 {A57R:G -> A56R:G: adjacent_3p downward } 0 6 {A56R:G -> A70R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A70R:C -> A56R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A57R:G -> A58R:C: adjacent_5p upward } 0 9 {A58R:C -> A57R:G: adjacent_3p downward } 0 10 {A57R:G -> A69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A69R:U -> A57R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A58R:C -> A68R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A68R:G -> A58R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A68R:G -> A69R:U: adjacent_5p upward } 0 15 {A69R:U -> A68R:G: adjacent_3p downward } 0 16 {A69R:U -> A70R:C: adjacent_5p } 0 17 {A70R:C -> A69R:U: adjacent_3p } 0 18 {A70R:C -> A71R:C: adjacent_5p upward } 0 19 {A71R:C -> A70R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A56R:G 0 1 A57R:G 0 2 A58R:C 0 3 A59R:A 0 4 A67R:U 0 5 A68R:G 0 6 A69R:U 0 7 A70R:C 0 [Edges] 0 {A56R:G -> A57R:G: adjacent_5p upward } 0 1 {A57R:G -> A56R:G: adjacent_3p downward } 0 2 {A56R:G -> A70R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A70R:C -> A56R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A57R:G -> A58R:C: adjacent_5p upward } 0 5 {A58R:C -> A57R:G: adjacent_3p downward } 0 6 {A57R:G -> A69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A69R:U -> A57R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A58R:C -> A59R:A: adjacent_5p upward } 0 9 {A59R:A -> A58R:C: adjacent_3p downward } 0 10 {A58R:C -> A68R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A68R:G -> A58R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A59R:A -> A67R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A67R:U -> A59R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A59R:A -> A68R:G: outward } 0 15 {A68R:G -> A59R:A: outward } 0 16 {A67R:U -> A68R:G: adjacent_5p upward } 0 17 {A68R:G -> A67R:U: adjacent_3p downward } 0 18 {A68R:G -> A69R:U: adjacent_5p upward } 0 19 {A69R:U -> A68R:G: adjacent_3p downward } 0 20 {A69R:U -> A70R:C: adjacent_5p } 0 21 {A70R:C -> A69R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A76R:G 0 1 A77R:G 0 2 A78R:U 0 3 A79R:G 0 4 A231R:C 0 5 A232R:A 0 6 A233R:C 0 7 A234R:C 0 [Edges] 0 {A76R:G -> A77R:G: adjacent_5p upward } 0 1 {A77R:G -> A76R:G: adjacent_3p downward } 0 2 {A76R:G -> A234R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A234R:C -> A76R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A77R:G -> A78R:U: adjacent_5p upward } 0 5 {A78R:U -> A77R:G: adjacent_3p downward } 0 6 {A77R:G -> A233R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A233R:C -> A77R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A78R:U -> A79R:G: adjacent_5p } 0 9 {A79R:G -> A78R:U: adjacent_3p } 0 10 {A78R:U -> A232R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A232R:A -> A78R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A79R:G -> A231R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A231R:C -> A79R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A79R:G -> A232R:A: outward } 0 15 {A232R:A -> A79R:G: outward } 0 16 {A231R:C -> A232R:A: adjacent_5p } 0 17 {A232R:A -> A231R:C: adjacent_3p } 0 18 {A232R:A -> A233R:C: adjacent_5p upward } 0 19 {A233R:C -> A232R:A: adjacent_3p downward } 0 20 {A233R:C -> A234R:C: adjacent_5p } 0 21 {A234R:C -> A233R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A80R:C 0 1 A81R:C 0 2 A82R:A 0 3 A83R:G 0 4 A91R:C 0 5 A92R:U 0 6 A93R:G 0 7 A94R:G 0 [Edges] 0 {A80R:C -> A81R:C: adjacent_5p } 0 1 {A81R:C -> A80R:C: adjacent_3p } 0 2 {A80R:C -> A94R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A94R:G -> A80R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A81R:C -> A82R:A: adjacent_5p } 0 5 {A82R:A -> A81R:C: adjacent_3p } 0 6 {A81R:C -> A93R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A93R:G -> A81R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A82R:A -> A83R:G: adjacent_5p upward } 0 9 {A83R:G -> A82R:A: adjacent_3p downward } 0 10 {A82R:A -> A92R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A92R:U -> A82R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A83R:G -> A91R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A91R:C -> A83R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A91R:C -> A92R:U: adjacent_5p } 0 15 {A92R:U -> A91R:C: adjacent_3p } 0 16 {A92R:U -> A93R:G: adjacent_5p upward } 0 17 {A93R:G -> A92R:U: adjacent_3p downward } 0 18 {A93R:G -> A94R:G: adjacent_5p upward } 0 19 {A94R:G -> A93R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A81R:C 0 1 A82R:A 0 2 A83R:G 0 3 A84R:G 0 4 A90R:C 0 5 A91R:C 0 6 A92R:U 0 7 A93R:G 0 [Edges] 0 {A81R:C -> A82R:A: adjacent_5p } 0 1 {A82R:A -> A81R:C: adjacent_3p } 0 2 {A81R:C -> A93R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A93R:G -> A81R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A82R:A -> A83R:G: adjacent_5p upward } 0 5 {A83R:G -> A82R:A: adjacent_3p downward } 0 6 {A82R:A -> A92R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A92R:U -> A82R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A83R:G -> A84R:G: adjacent_5p upward } 0 9 {A84R:G -> A83R:G: adjacent_3p downward } 0 10 {A83R:G -> A91R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A91R:C -> A83R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A84R:G -> A90R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A90R:C -> A84R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A90R:C -> A91R:C: adjacent_5p } 0 15 {A91R:C -> A90R:C: adjacent_3p } 0 16 {A91R:C -> A92R:U: adjacent_5p } 0 17 {A92R:U -> A91R:C: adjacent_3p } 0 18 {A92R:U -> A93R:G: adjacent_5p upward } 0 19 {A93R:G -> A92R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A96R:C 0 1 A97R:G 0 2 A98R:G 0 3 A99R:G 0 4 A104R:C 0 5 A105R:C 0 6 A106R:C 0 7 A107R:G 0 [Edges] 0 {A96R:C -> A97R:G: adjacent_5p } 0 1 {A97R:G -> A96R:C: adjacent_3p } 0 2 {A96R:C -> A107R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A107R:G -> A96R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A97R:G -> A98R:G: adjacent_5p upward } 0 5 {A98R:G -> A97R:G: adjacent_3p downward } 0 6 {A97R:G -> A106R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A106R:C -> A97R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A97R:G -> A107R:G: outward } 0 9 {A107R:G -> A97R:G: outward } 0 10 {A98R:G -> A99R:G: adjacent_5p upward } 0 11 {A99R:G -> A98R:G: adjacent_3p downward } 0 12 {A98R:G -> A105R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A105R:C -> A98R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A99R:G -> A104R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A104R:C -> A99R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A104R:C -> A105R:C: adjacent_5p } 0 17 {A105R:C -> A104R:C: adjacent_3p } 0 18 {A105R:C -> A106R:C: adjacent_5p } 0 19 {A106R:C -> A105R:C: adjacent_3p } 0 20 {A106R:C -> A107R:G: adjacent_5p upward } 0 21 {A107R:G -> A106R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A141R:G 0 1 A142R:C 0 2 A143R:C 0 3 A144R:G 0 4 A155R:C 0 5 A156R:G 0 6 A157R:G 0 7 A158R:U 0 [Edges] 0 {A141R:G -> A142R:C: adjacent_5p upward } 0 1 {A142R:C -> A141R:G: adjacent_3p downward } 0 2 {A141R:G -> A158R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 3 {A158R:U -> A141R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 4 {A142R:C -> A143R:C: adjacent_5p } 0 5 {A143R:C -> A142R:C: adjacent_3p } 0 6 {A142R:C -> A157R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A157R:G -> A142R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A143R:C -> A144R:G: adjacent_5p } 0 9 {A144R:G -> A143R:C: adjacent_3p } 0 10 {A143R:C -> A156R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A156R:G -> A143R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A144R:G -> A155R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A155R:C -> A144R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A144R:G -> A156R:G: outward } 0 15 {A156R:G -> A144R:G: outward } 0 16 {A155R:C -> A156R:G: adjacent_5p } 0 17 {A156R:G -> A155R:C: adjacent_3p } 0 18 {A156R:G -> A157R:G: adjacent_5p upward } 0 19 {A157R:G -> A156R:G: adjacent_3p downward } 0 20 {A157R:G -> A158R:U: adjacent_5p upward } 0 21 {A158R:U -> A157R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A142R:C 0 1 A143R:C 0 2 A144R:G 0 3 A145R:G 0 4 A154R:C 0 5 A155R:C 0 6 A156R:G 0 7 A157R:G 0 [Edges] 0 {A142R:C -> A143R:C: adjacent_5p } 0 1 {A143R:C -> A142R:C: adjacent_3p } 0 2 {A142R:C -> A157R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A157R:G -> A142R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A143R:C -> A144R:G: adjacent_5p } 0 5 {A144R:G -> A143R:C: adjacent_3p } 0 6 {A143R:C -> A156R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A156R:G -> A143R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A144R:G -> A145R:G: adjacent_5p upward } 0 9 {A145R:G -> A144R:G: adjacent_3p downward } 0 10 {A144R:G -> A155R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A155R:C -> A144R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A144R:G -> A156R:G: outward } 0 13 {A156R:G -> A144R:G: outward } 0 14 {A145R:G -> A154R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A154R:C -> A145R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A154R:C -> A155R:C: adjacent_5p } 0 17 {A155R:C -> A154R:C: adjacent_3p } 0 18 {A155R:C -> A156R:G: adjacent_5p } 0 19 {A156R:G -> A155R:C: adjacent_3p } 0 20 {A156R:G -> A157R:G: adjacent_5p upward } 0 21 {A157R:G -> A156R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A143R:C 0 1 A144R:G 0 2 A145R:G 0 3 A146R:G 0 4 A153R:C 0 5 A154R:C 0 6 A155R:C 0 7 A156R:G 0 [Edges] 0 {A143R:C -> A144R:G: adjacent_5p } 0 1 {A144R:G -> A143R:C: adjacent_3p } 0 2 {A143R:C -> A156R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A156R:G -> A143R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A144R:G -> A145R:G: adjacent_5p upward } 0 5 {A145R:G -> A144R:G: adjacent_3p downward } 0 6 {A144R:G -> A155R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A155R:C -> A144R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A144R:G -> A156R:G: outward } 0 9 {A156R:G -> A144R:G: outward } 0 10 {A145R:G -> A146R:G: adjacent_5p upward } 0 11 {A146R:G -> A145R:G: adjacent_3p downward } 0 12 {A145R:G -> A154R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A154R:C -> A145R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A146R:G -> A153R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A153R:C -> A146R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A153R:C -> A154R:C: adjacent_5p } 0 17 {A154R:C -> A153R:C: adjacent_3p } 0 18 {A154R:C -> A155R:C: adjacent_5p } 0 19 {A155R:C -> A154R:C: adjacent_3p } 0 20 {A155R:C -> A156R:G: adjacent_5p } 0 21 {A156R:G -> A155R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A144R:G 0 1 A145R:G 0 2 A146R:G 0 3 A147R:G 0 4 A152R:C 0 5 A153R:C 0 6 A154R:C 0 7 A155R:C 0 [Edges] 0 {A144R:G -> A145R:G: adjacent_5p upward } 0 1 {A145R:G -> A144R:G: adjacent_3p downward } 0 2 {A144R:G -> A155R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A155R:C -> A144R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A145R:G -> A146R:G: adjacent_5p upward } 0 5 {A146R:G -> A145R:G: adjacent_3p downward } 0 6 {A145R:G -> A154R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A154R:C -> A145R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A146R:G -> A147R:G: adjacent_5p upward } 0 9 {A147R:G -> A146R:G: adjacent_3p downward } 0 10 {A146R:G -> A153R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A153R:C -> A146R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A147R:G -> A152R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A152R:C -> A147R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A152R:C -> A153R:C: adjacent_5p upward } 0 15 {A153R:C -> A152R:C: adjacent_3p downward } 0 16 {A153R:C -> A154R:C: adjacent_5p } 0 17 {A154R:C -> A153R:C: adjacent_3p } 0 18 {A154R:C -> A155R:C: adjacent_5p } 0 19 {A155R:C -> A154R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A176R:G 0 1 A177R:G 0 2 A178R:C 0 3 A179R:G 0 4 A191R:C 0 5 A192R:A 0 6 A193R:C 0 7 A194R:C 0 [Edges] 0 {A176R:G -> A177R:G: adjacent_5p upward } 0 1 {A177R:G -> A176R:G: adjacent_3p downward } 0 2 {A176R:G -> A194R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A194R:C -> A176R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A177R:G -> A178R:C: adjacent_5p upward } 0 5 {A178R:C -> A177R:G: adjacent_3p downward } 0 6 {A177R:G -> A193R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A193R:C -> A177R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A177R:G -> A194R:C: outward } 0 9 {A194R:C -> A177R:G: outward } 0 10 {A178R:C -> A179R:G: adjacent_5p upward } 0 11 {A179R:G -> A178R:C: adjacent_3p downward } 0 12 {A178R:C -> A192R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 13 {A192R:A -> A178R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 14 {A179R:G -> A191R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A191R:C -> A179R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A179R:G -> A192R:A: outward } 0 17 {A192R:A -> A179R:G: outward } 0 18 {A191R:C -> A192R:A: adjacent_5p } 0 19 {A192R:A -> A191R:C: adjacent_3p } 0 20 {A192R:A -> A193R:C: adjacent_5p upward } 0 21 {A193R:C -> A192R:A: adjacent_3p downward } 0 22 {A193R:C -> A194R:C: adjacent_5p } 0 23 {A194R:C -> A193R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A177R:G 0 1 A178R:C 0 2 A179R:G 0 3 A180R:G 0 4 A190R:C 0 5 A191R:C 0 6 A192R:A 0 7 A193R:C 0 [Edges] 0 {A177R:G -> A178R:C: adjacent_5p upward } 0 1 {A178R:C -> A177R:G: adjacent_3p downward } 0 2 {A177R:G -> A193R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A193R:C -> A177R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A178R:C -> A179R:G: adjacent_5p upward } 0 5 {A179R:G -> A178R:C: adjacent_3p downward } 0 6 {A178R:C -> A192R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 7 {A192R:A -> A178R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 8 {A179R:G -> A180R:G: adjacent_5p upward } 0 9 {A180R:G -> A179R:G: adjacent_3p downward } 0 10 {A179R:G -> A191R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A191R:C -> A179R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A179R:G -> A192R:A: outward } 0 13 {A192R:A -> A179R:G: outward } 0 14 {A180R:G -> A190R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A190R:C -> A180R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A190R:C -> A191R:C: adjacent_5p } 0 17 {A191R:C -> A190R:C: adjacent_3p } 0 18 {A191R:C -> A192R:A: adjacent_5p } 0 19 {A192R:A -> A191R:C: adjacent_3p } 0 20 {A192R:A -> A193R:C: adjacent_5p upward } 0 21 {A193R:C -> A192R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A178R:C 0 1 A179R:G 0 2 A180R:G 0 3 A181R:G 0 4 A189R:C 0 5 A190R:C 0 6 A191R:C 0 7 A192R:A 0 [Edges] 0 {A178R:C -> A179R:G: adjacent_5p upward } 0 1 {A179R:G -> A178R:C: adjacent_3p downward } 0 2 {A178R:C -> A192R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 3 {A192R:A -> A178R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 4 {A179R:G -> A180R:G: adjacent_5p upward } 0 5 {A180R:G -> A179R:G: adjacent_3p downward } 0 6 {A179R:G -> A191R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A191R:C -> A179R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A179R:G -> A192R:A: outward } 0 9 {A192R:A -> A179R:G: outward } 0 10 {A180R:G -> A181R:G: adjacent_5p upward } 0 11 {A181R:G -> A180R:G: adjacent_3p downward } 0 12 {A180R:G -> A190R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A190R:C -> A180R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A181R:G -> A189R:C: pairing antiparallel cis Ww/Ww } 0 15 {A189R:C -> A181R:G: pairing antiparallel cis Ww/Ww } 0 16 {A181R:G -> A190R:C: outward } 0 17 {A190R:C -> A181R:G: outward } 0 18 {A189R:C -> A190R:C: adjacent_5p } 0 19 {A190R:C -> A189R:C: adjacent_3p } 0 20 {A190R:C -> A191R:C: adjacent_5p } 0 21 {A191R:C -> A190R:C: adjacent_3p } 0 22 {A191R:C -> A192R:A: adjacent_5p } 0 23 {A192R:A -> A191R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A196R:C 0 1 A197R:C 0 2 A198R:U 0 3 A199R:G 0 4 A214R:C 0 5 A215R:G 0 6 A216R:G 0 7 A217R:G 0 [Edges] 0 {A196R:C -> A197R:C: adjacent_5p } 0 1 {A197R:C -> A196R:C: adjacent_3p } 0 2 {A196R:C -> A217R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A217R:G -> A196R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A197R:C -> A198R:U: adjacent_5p upward } 0 5 {A198R:U -> A197R:C: adjacent_3p downward } 0 6 {A197R:C -> A216R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A216R:G -> A197R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A198R:U -> A199R:G: adjacent_5p } 0 9 {A199R:G -> A198R:U: adjacent_3p } 0 10 {A198R:U -> A215R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A215R:G -> A198R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A199R:G -> A214R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A214R:C -> A199R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A199R:G -> A215R:G: outward } 0 15 {A215R:G -> A199R:G: outward } 0 16 {A214R:C -> A215R:G: adjacent_5p upward } 0 17 {A215R:G -> A214R:C: adjacent_3p downward } 0 18 {A215R:G -> A216R:G: adjacent_5p upward } 0 19 {A216R:G -> A215R:G: adjacent_3p downward } 0 20 {A216R:G -> A217R:G: adjacent_5p upward } 0 21 {A217R:G -> A216R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A197R:C 0 1 A198R:U 0 2 A199R:G 0 3 A200R:G 0 4 A213R:C 0 5 A214R:C 0 6 A215R:G 0 7 A216R:G 0 [Edges] 0 {A197R:C -> A198R:U: adjacent_5p upward } 0 1 {A198R:U -> A197R:C: adjacent_3p downward } 0 2 {A197R:C -> A216R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A216R:G -> A197R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A198R:U -> A199R:G: adjacent_5p } 0 5 {A199R:G -> A198R:U: adjacent_3p } 0 6 {A198R:U -> A215R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A215R:G -> A198R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A199R:G -> A200R:G: adjacent_5p upward } 0 9 {A200R:G -> A199R:G: adjacent_3p downward } 0 10 {A199R:G -> A214R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A214R:C -> A199R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A199R:G -> A215R:G: outward } 0 13 {A215R:G -> A199R:G: outward } 0 14 {A200R:G -> A213R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A213R:C -> A200R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A213R:C -> A214R:C: adjacent_5p upward } 0 17 {A214R:C -> A213R:C: adjacent_3p downward } 0 18 {A214R:C -> A215R:G: adjacent_5p upward } 0 19 {A215R:G -> A214R:C: adjacent_3p downward } 0 20 {A215R:G -> A216R:G: adjacent_5p upward } 0 21 {A216R:G -> A215R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A198R:U 0 1 A199R:G 0 2 A200R:G 0 3 A201R:C 0 4 A212R:G 0 5 A213R:C 0 6 A214R:C 0 7 A215R:G 0 [Edges] 0 {A198R:U -> A199R:G: adjacent_5p } 0 1 {A199R:G -> A198R:U: adjacent_3p } 0 2 {A198R:U -> A215R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A215R:G -> A198R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A199R:G -> A200R:G: adjacent_5p upward } 0 5 {A200R:G -> A199R:G: adjacent_3p downward } 0 6 {A199R:G -> A214R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A214R:C -> A199R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A199R:G -> A215R:G: outward } 0 9 {A215R:G -> A199R:G: outward } 0 10 {A200R:G -> A201R:C: adjacent_5p upward } 0 11 {A201R:C -> A200R:G: adjacent_3p downward } 0 12 {A200R:G -> A213R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A213R:C -> A200R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A201R:C -> A212R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A212R:G -> A201R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A212R:G -> A213R:C: adjacent_5p upward } 0 17 {A213R:C -> A212R:G: adjacent_3p downward } 0 18 {A213R:C -> A214R:C: adjacent_5p upward } 0 19 {A214R:C -> A213R:C: adjacent_3p downward } 0 20 {A214R:C -> A215R:G: adjacent_5p upward } 0 21 {A215R:G -> A214R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A199R:G 0 1 A200R:G 0 2 A201R:C 0 3 A202R:C 0 4 A211R:G 0 5 A212R:G 0 6 A213R:C 0 7 A214R:C 0 [Edges] 0 {A199R:G -> A200R:G: adjacent_5p upward } 0 1 {A200R:G -> A199R:G: adjacent_3p downward } 0 2 {A199R:G -> A214R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A214R:C -> A199R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A200R:G -> A201R:C: adjacent_5p upward } 0 5 {A201R:C -> A200R:G: adjacent_3p downward } 0 6 {A200R:G -> A213R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A213R:C -> A200R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A201R:C -> A202R:C: adjacent_5p } 0 9 {A202R:C -> A201R:C: adjacent_3p } 0 10 {A201R:C -> A212R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A212R:G -> A201R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A202R:C -> A211R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A211R:G -> A202R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A211R:G -> A212R:G: adjacent_5p upward } 0 15 {A212R:G -> A211R:G: adjacent_3p downward } 0 16 {A212R:G -> A213R:C: adjacent_5p upward } 0 17 {A213R:C -> A212R:G: adjacent_3p downward } 0 18 {A213R:C -> A214R:C: adjacent_5p upward } 0 19 {A214R:C -> A213R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A200R:G 0 1 A201R:C 0 2 A202R:C 0 3 A203R:U 0 4 A210R:A 0 5 A211R:G 0 6 A212R:G 0 7 A213R:C 0 [Edges] 0 {A200R:G -> A201R:C: adjacent_5p upward } 0 1 {A201R:C -> A200R:G: adjacent_3p downward } 0 2 {A200R:G -> A213R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A213R:C -> A200R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A201R:C -> A202R:C: adjacent_5p } 0 5 {A202R:C -> A201R:C: adjacent_3p } 0 6 {A201R:C -> A212R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A212R:G -> A201R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A202R:C -> A203R:U: adjacent_5p } 0 9 {A203R:U -> A202R:C: adjacent_3p } 0 10 {A202R:C -> A211R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A211R:G -> A202R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A203R:U -> A210R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A210R:A -> A203R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A210R:A -> A211R:G: adjacent_5p upward } 0 15 {A211R:G -> A210R:A: adjacent_3p downward } 0 16 {A211R:G -> A212R:G: adjacent_5p upward } 0 17 {A212R:G -> A211R:G: adjacent_3p downward } 0 18 {A212R:G -> A213R:C: adjacent_5p upward } 0 19 {A213R:C -> A212R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A201R:C 0 1 A202R:C 0 2 A203R:U 0 3 A204R:G 0 4 A209R:C 0 5 A210R:A 0 6 A211R:G 0 7 A212R:G 0 [Edges] 0 {A201R:C -> A202R:C: adjacent_5p } 0 1 {A202R:C -> A201R:C: adjacent_3p } 0 2 {A201R:C -> A212R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A212R:G -> A201R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A202R:C -> A203R:U: adjacent_5p } 0 5 {A203R:U -> A202R:C: adjacent_3p } 0 6 {A202R:C -> A211R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A211R:G -> A202R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A203R:U -> A204R:G: adjacent_5p upward } 0 9 {A204R:G -> A203R:U: adjacent_3p downward } 0 10 {A203R:U -> A210R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A210R:A -> A203R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A204R:G -> A209R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A209R:C -> A204R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A204R:G -> A210R:A: outward } 0 15 {A210R:A -> A204R:G: outward } 0 16 {A209R:C -> A210R:A: adjacent_5p } 0 17 {A210R:A -> A209R:C: adjacent_3p } 0 18 {A210R:A -> A211R:G: adjacent_5p upward } 0 19 {A211R:G -> A210R:A: adjacent_3p downward } 0 20 {A211R:G -> A212R:G: adjacent_5p upward } 0 21 {A212R:G -> A211R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:U 0 3 A5R:G 0 4 A31R:C 0 5 A32R:A 0 6 A33R:G 0 7 A34R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p } 0 1 {A3R:C -> A2R:G: adjacent_3p } 0 2 {A2R:G -> A34R:C: pairing antiparallel cis Ww/Ww } 0 3 {A34R:C -> A2R:G: pairing antiparallel cis Ww/Ww } 0 4 {A3R:C -> A4R:U: adjacent_5p } 0 5 {A4R:U -> A3R:C: adjacent_3p } 0 6 {A3R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A33R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:U -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:U: adjacent_3p downward } 0 10 {A4R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A32R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A31R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A5R:G -> A32R:A: outward } 0 15 {A32R:A -> A5R:G: outward } 0 16 {A31R:C -> A32R:A: adjacent_5p upward } 0 17 {A32R:A -> A31R:C: adjacent_3p downward } 0 18 {A32R:A -> A33R:G: adjacent_5p upward } 0 19 {A33R:G -> A32R:A: adjacent_3p downward } 0 20 {A33R:G -> A34R:C: adjacent_5p } 0 21 {A34R:C -> A33R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:U 0 2 A5R:G 0 3 A6R:G 0 4 A30R:A 0 5 A31R:C 0 6 A32R:A 0 7 A33R:G 0 [Edges] 0 {A3R:C -> A4R:U: adjacent_5p } 0 1 {A4R:U -> A3R:C: adjacent_3p } 0 2 {A3R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A33R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:U -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:U: adjacent_3p downward } 0 6 {A4R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A32R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:G -> A6R:G: adjacent_5p } 0 9 {A6R:G -> A5R:G: adjacent_3p } 0 10 {A5R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A31R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A32R:A: outward } 0 13 {A32R:A -> A5R:G: outward } 0 14 {A6R:G -> A30R:A: pairing antiparallel cis VIII Ww/Ww } 0 15 {A30R:A -> A6R:G: pairing antiparallel cis VIII Ww/Ww } 0 16 {A30R:A -> A31R:C: adjacent_5p upward } 0 17 {A31R:C -> A30R:A: adjacent_3p downward } 0 18 {A31R:C -> A32R:A: adjacent_5p upward } 0 19 {A32R:A -> A31R:C: adjacent_3p downward } 0 20 {A32R:A -> A33R:G: adjacent_5p upward } 0 21 {A33R:G -> A32R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:A 0 1 A8R:C 0 2 A9R:U 0 3 A10R:C 0 4 A25R:G 0 5 A26R:A 0 6 A27R:G 0 7 A28R:A 0 [Edges] 0 {A7R:A -> A8R:C: adjacent_5p upward } 0 1 {A8R:C -> A7R:A: adjacent_3p downward } 0 2 {A7R:A -> A28R:A: pairing parallel trans I Ww/Ww } 0 3 {A28R:A -> A7R:A: pairing parallel trans I Ww/Ww } 0 4 {A8R:C -> A9R:U: adjacent_5p upward } 0 5 {A9R:U -> A8R:C: adjacent_3p downward } 0 6 {A8R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A27R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:U -> A10R:C: adjacent_5p upward } 0 9 {A10R:C -> A9R:U: adjacent_3p downward } 0 10 {A9R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A26R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A10R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A25R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A25R:G -> A26R:A: adjacent_5p upward } 0 15 {A26R:A -> A25R:G: adjacent_3p downward } 0 16 {A26R:A -> A27R:G: adjacent_5p upward } 0 17 {A27R:G -> A26R:A: adjacent_3p downward } 0 18 {A27R:G -> A28R:A: adjacent_5p inward } 0 19 {A28R:A -> A27R:G: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:G 0 1 A12R:U 0 2 A13R:A 0 3 A14R:C 0 4 A19R:G 0 5 A20R:U 0 6 A21R:A 0 7 A22R:C 0 [Edges] 0 {A11R:G -> A12R:U: adjacent_5p upward } 0 1 {A12R:U -> A11R:G: adjacent_3p downward } 0 2 {A11R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:U -> A13R:A: adjacent_5p } 0 5 {A13R:A -> A12R:U: adjacent_3p } 0 6 {A12R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A21R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A13R:A -> A14R:C: adjacent_5p upward } 0 9 {A14R:C -> A13R:A: adjacent_3p downward } 0 10 {A13R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A20R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A13R:A -> A21R:A: outward } 0 13 {A21R:A -> A13R:A: outward } 0 14 {A14R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A19R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A19R:G -> A20R:U: adjacent_5p upward } 0 17 {A20R:U -> A19R:G: adjacent_3p downward } 0 18 {A20R:U -> A21R:A: adjacent_5p } 0 19 {A21R:A -> A20R:U: adjacent_3p } 0 20 {A21R:A -> A22R:C: adjacent_5p upward } 0 21 {A22R:C -> A21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A12R:U 0 1 A13R:A 0 2 A14R:C 0 3 A15R:U 0 4 A18R:G 0 5 A19R:G 0 6 A20R:U 0 7 A21R:A 0 [Edges] 0 {A12R:U -> A13R:A: adjacent_5p } 0 1 {A13R:A -> A12R:U: adjacent_3p } 0 2 {A12R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A21R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A13R:A -> A14R:C: adjacent_5p upward } 0 5 {A14R:C -> A13R:A: adjacent_3p downward } 0 6 {A13R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A20R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A13R:A -> A21R:A: outward } 0 9 {A21R:A -> A13R:A: outward } 0 10 {A14R:C -> A15R:U: adjacent_5p upward } 0 11 {A15R:U -> A14R:C: adjacent_3p downward } 0 12 {A14R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A15R:U -> A18R:G: pairing parallel trans one_hbond Ws/Ww } 0 15 {A18R:G -> A15R:U: pairing parallel trans one_hbond Ww/Ws } 0 16 {A18R:G -> A19R:G: adjacent_5p outward } 0 17 {A19R:G -> A18R:G: adjacent_3p outward } 0 18 {A19R:G -> A20R:U: adjacent_5p upward } 0 19 {A20R:U -> A19R:G: adjacent_3p downward } 0 20 {A20R:U -> A21R:A: adjacent_5p } 0 21 {A21R:A -> A20R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 B18R:G 0 1 B19R:C 0 2 B20R:A 0 3 B21R:G 0 4 B41R:C 0 5 B42R:U 0 6 B43R:G 0 7 B44R:C 0 [Edges] 0 {B18R:G -> B19R:C: adjacent_5p upward } 0 1 {B19R:C -> B18R:G: adjacent_3p downward } 0 2 {B18R:G -> B44R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B44R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B19R:C -> B20R:A: adjacent_5p } 0 5 {B20R:A -> B19R:C: adjacent_3p } 0 6 {B19R:C -> B43R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B43R:G -> B19R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B20R:A -> B21R:G: adjacent_5p upward } 0 9 {B21R:G -> B20R:A: adjacent_3p downward } 0 10 {B20R:A -> B42R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B42R:U -> B20R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B20R:A -> B43R:G: outward } 0 13 {B43R:G -> B20R:A: outward } 0 14 {B21R:G -> B41R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B41R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B41R:C -> B42R:U: adjacent_5p } 0 17 {B42R:U -> B41R:C: adjacent_3p } 0 18 {B42R:U -> B43R:G: adjacent_5p } 0 19 {B43R:G -> B42R:U: adjacent_3p } 0 20 {B43R:G -> B44R:C: adjacent_5p upward } 0 21 {B44R:C -> B43R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B19R:C 0 1 B20R:A 0 2 B21R:G 0 3 B22R:A 0 4 B40R:U 0 5 B41R:C 0 6 B42R:U 0 7 B43R:G 0 [Edges] 0 {B19R:C -> B20R:A: adjacent_5p } 0 1 {B20R:A -> B19R:C: adjacent_3p } 0 2 {B19R:C -> B43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B43R:G -> B19R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B20R:A -> B21R:G: adjacent_5p upward } 0 5 {B21R:G -> B20R:A: adjacent_3p downward } 0 6 {B20R:A -> B42R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B42R:U -> B20R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B20R:A -> B43R:G: outward } 0 9 {B43R:G -> B20R:A: outward } 0 10 {B21R:G -> B22R:A: adjacent_5p upward } 0 11 {B22R:A -> B21R:G: adjacent_3p downward } 0 12 {B21R:G -> B41R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B41R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B22R:A -> B40R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B40R:U -> B22R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B40R:U -> B41R:C: adjacent_5p upward } 0 17 {B41R:C -> B40R:U: adjacent_3p downward } 0 18 {B41R:C -> B42R:U: adjacent_5p } 0 19 {B42R:U -> B41R:C: adjacent_3p } 0 20 {B42R:U -> B43R:G: adjacent_5p } 0 21 {B43R:G -> B42R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B26R:G 0 1 B27R:A 0 2 B28R:G 0 3 B29R:C 0 4 B36R:G 0 5 B37R:C 0 6 B38R:U 0 7 B39R:C 0 [Edges] 0 {B26R:G -> B27R:A: adjacent_5p upward } 0 1 {B27R:A -> B26R:G: adjacent_3p downward } 0 2 {B26R:G -> B39R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B39R:C -> B26R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B27R:A -> B28R:G: adjacent_5p upward } 0 5 {B28R:G -> B27R:A: adjacent_3p downward } 0 6 {B27R:A -> B38R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B38R:U -> B27R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B28R:G -> B29R:C: adjacent_5p upward } 0 9 {B29R:C -> B28R:G: adjacent_3p downward } 0 10 {B28R:G -> B37R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B37R:C -> B28R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B29R:C -> B36R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B36R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B36R:G -> B37R:C: adjacent_5p } 0 15 {B37R:C -> B36R:G: adjacent_3p } 0 16 {B37R:C -> B38R:U: adjacent_5p } 0 17 {B38R:U -> B37R:C: adjacent_3p } 0 18 {B38R:U -> B39R:C: adjacent_5p } 0 19 {B39R:C -> B38R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:C 0 2 4R:G 0 3 5R:U 0 4 15R:A 0 5 16R:C 0 6 17R:G 0 7 18R:C 0 [Edges] 0 {2R:G -> 3R:C: adjacent_5p upward } 0 1 {3R:C -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {18R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:C -> 4R:G: adjacent_5p upward } 0 5 {4R:G -> 3R:C: adjacent_3p downward } 0 6 {3R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {17R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:G -> 5R:U: adjacent_5p upward } 0 9 {5R:U -> 4R:G: adjacent_3p downward } 0 10 {4R:G -> 16R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {16R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {4R:G -> 17R:G: outward } 0 13 {17R:G -> 4R:G: outward } 0 14 {5R:U -> 15R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {15R:A -> 5R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {15R:A -> 16R:C: adjacent_5p upward } 0 17 {16R:C -> 15R:A: adjacent_3p downward } 0 18 {16R:C -> 17R:G: adjacent_5p upward } 0 19 {17R:G -> 16R:C: adjacent_3p downward } 0 20 {17R:G -> 18R:C: adjacent_5p upward } 0 21 {18R:C -> 17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 3R:C 0 1 4R:G 0 2 5R:U 0 3 6R:A 0 4 14R:U 0 5 15R:A 0 6 16R:C 0 7 17R:G 0 [Edges] 0 {3R:C -> 4R:G: adjacent_5p upward } 0 1 {4R:G -> 3R:C: adjacent_3p downward } 0 2 {3R:C -> 17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {17R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:G -> 5R:U: adjacent_5p upward } 0 5 {5R:U -> 4R:G: adjacent_3p downward } 0 6 {4R:G -> 16R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {16R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:G -> 17R:G: outward } 0 9 {17R:G -> 4R:G: outward } 0 10 {5R:U -> 6R:A: adjacent_5p upward } 0 11 {6R:A -> 5R:U: adjacent_3p downward } 0 12 {5R:U -> 15R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {15R:A -> 5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {6R:A -> 14R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {14R:U -> 6R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {6R:A -> 15R:A: outward } 0 17 {15R:A -> 6R:A: outward } 0 18 {14R:U -> 15R:A: adjacent_5p upward } 0 19 {15R:A -> 14R:U: adjacent_3p downward } 0 20 {15R:A -> 16R:C: adjacent_5p upward } 0 21 {16R:C -> 15R:A: adjacent_3p downward } 0 22 {16R:C -> 17R:G: adjacent_5p upward } 0 23 {17R:G -> 16R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 4R:G 0 1 5R:U 0 2 6R:A 0 3 7R:C 0 4 13R:G 0 5 14R:U 0 6 15R:A 0 7 16R:C 0 [Edges] 0 {4R:G -> 5R:U: adjacent_5p upward } 0 1 {5R:U -> 4R:G: adjacent_3p downward } 0 2 {4R:G -> 16R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {16R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {5R:U -> 6R:A: adjacent_5p upward } 0 5 {6R:A -> 5R:U: adjacent_3p downward } 0 6 {5R:U -> 15R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {15R:A -> 5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {6R:A -> 7R:C: adjacent_5p upward } 0 9 {7R:C -> 6R:A: adjacent_3p downward } 0 10 {6R:A -> 14R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {14R:U -> 6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {6R:A -> 15R:A: outward } 0 13 {15R:A -> 6R:A: outward } 0 14 {7R:C -> 13R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {13R:G -> 7R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {13R:G -> 14R:U: adjacent_5p upward } 0 17 {14R:U -> 13R:G: adjacent_3p downward } 0 18 {14R:U -> 15R:A: adjacent_5p upward } 0 19 {15R:A -> 14R:U: adjacent_3p downward } 0 20 {15R:A -> 16R:C: adjacent_5p upward } 0 21 {16R:C -> 15R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C1R:G 0 1 C2R:G 0 2 C3R:C 0 3 C4R:C 0 4 C69R:G 0 5 C70R:G 0 6 C71R:C 0 7 C72R:C 0 [Edges] 0 {C1R:G -> C2R:G: adjacent_5p } 0 1 {C2R:G -> C1R:G: adjacent_3p } 0 2 {C1R:G -> C72R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C72R:C -> C1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C2R:G -> C3R:C: adjacent_5p upward } 0 5 {C3R:C -> C2R:G: adjacent_3p downward } 0 6 {C2R:G -> C71R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {C71R:C -> C2R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {C3R:C -> C4R:C: adjacent_5p } 0 9 {C4R:C -> C3R:C: adjacent_3p } 0 10 {C3R:C -> C70R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C70R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C4R:C -> C69R:G: pairing antiparallel cis Ww/Ww } 0 13 {C69R:G -> C4R:C: pairing antiparallel cis Ww/Ww } 0 14 {C4R:C -> C70R:G: outward } 0 15 {C70R:G -> C4R:C: outward } 0 16 {C69R:G -> C70R:G: adjacent_5p upward } 0 17 {C70R:G -> C69R:G: adjacent_3p downward } 0 18 {C70R:G -> C71R:C: adjacent_5p upward } 0 19 {C71R:C -> C70R:G: adjacent_3p downward } 0 20 {C71R:C -> C72R:C: adjacent_5p } 0 21 {C72R:C -> C71R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C2R:G 0 1 C3R:C 0 2 C4R:C 0 3 C5R:A 0 4 C68R:U 0 5 C69R:G 0 6 C70R:G 0 7 C71R:C 0 [Edges] 0 {C2R:G -> C3R:C: adjacent_5p upward } 0 1 {C3R:C -> C2R:G: adjacent_3p downward } 0 2 {C2R:G -> C71R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {C71R:C -> C2R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {C3R:C -> C4R:C: adjacent_5p } 0 5 {C4R:C -> C3R:C: adjacent_3p } 0 6 {C3R:C -> C70R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C70R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:C -> C5R:A: adjacent_5p upward } 0 9 {C5R:A -> C4R:C: adjacent_3p downward } 0 10 {C4R:C -> C69R:G: pairing antiparallel cis Ww/Ww } 0 11 {C69R:G -> C4R:C: pairing antiparallel cis Ww/Ww } 0 12 {C4R:C -> C70R:G: outward } 0 13 {C70R:G -> C4R:C: outward } 0 14 {C5R:A -> C68R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {C68R:U -> C5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {C68R:U -> C69R:G: adjacent_5p } 0 17 {C69R:G -> C68R:U: adjacent_3p } 0 18 {C69R:G -> C70R:G: adjacent_5p upward } 0 19 {C70R:G -> C69R:G: adjacent_3p downward } 0 20 {C70R:G -> C71R:C: adjacent_5p upward } 0 21 {C71R:C -> C70R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C3R:C 0 1 C4R:C 0 2 C5R:A 0 3 C6R:G 0 4 C67R:C 0 5 C68R:U 0 6 C69R:G 0 7 C70R:G 0 [Edges] 0 {C3R:C -> C4R:C: adjacent_5p } 0 1 {C4R:C -> C3R:C: adjacent_3p } 0 2 {C3R:C -> C70R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C70R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C4R:C -> C5R:A: adjacent_5p upward } 0 5 {C5R:A -> C4R:C: adjacent_3p downward } 0 6 {C4R:C -> C69R:G: pairing antiparallel cis Ww/Ww } 0 7 {C69R:G -> C4R:C: pairing antiparallel cis Ww/Ww } 0 8 {C4R:C -> C70R:G: outward } 0 9 {C70R:G -> C4R:C: outward } 0 10 {C5R:A -> C6R:G: adjacent_5p upward } 0 11 {C6R:G -> C5R:A: adjacent_3p downward } 0 12 {C5R:A -> C68R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {C68R:U -> C5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {C6R:G -> C67R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C67R:C -> C6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C67R:C -> C68R:U: adjacent_5p } 0 17 {C68R:U -> C67R:C: adjacent_3p } 0 18 {C68R:U -> C69R:G: adjacent_5p } 0 19 {C69R:G -> C68R:U: adjacent_3p } 0 20 {C69R:G -> C70R:G: adjacent_5p upward } 0 21 {C70R:G -> C69R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C4R:C 0 1 C5R:A 0 2 C6R:G 0 3 C7R:G 0 4 C66R:C 0 5 C67R:C 0 6 C68R:U 0 7 C69R:G 0 [Edges] 0 {C4R:C -> C5R:A: adjacent_5p upward } 0 1 {C5R:A -> C4R:C: adjacent_3p downward } 0 2 {C4R:C -> C69R:G: pairing antiparallel cis Ww/Ww } 0 3 {C69R:G -> C4R:C: pairing antiparallel cis Ww/Ww } 0 4 {C5R:A -> C6R:G: adjacent_5p upward } 0 5 {C6R:G -> C5R:A: adjacent_3p downward } 0 6 {C5R:A -> C68R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C68R:U -> C5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C6R:G -> C7R:G: adjacent_5p upward } 0 9 {C7R:G -> C6R:G: adjacent_3p downward } 0 10 {C6R:G -> C67R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C67R:C -> C6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C7R:G -> C66R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C66R:C -> C7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C66R:C -> C67R:C: adjacent_5p upward } 0 15 {C67R:C -> C66R:C: adjacent_3p downward } 0 16 {C67R:C -> C68R:U: adjacent_5p } 0 17 {C68R:U -> C67R:C: adjacent_3p } 0 18 {C68R:U -> C69R:G: adjacent_5p } 0 19 {C69R:G -> C68R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C49R:G 0 1 C50R:G 0 2 C51R:C 0 3 C52R:G 0 4 C62R:C 0 5 C63R:G 0 6 C64R:C 0 7 C65R:C 0 [Edges] 0 {C49R:G -> C50R:G: adjacent_5p upward } 0 1 {C50R:G -> C49R:G: adjacent_3p downward } 0 2 {C49R:G -> C65R:C: pairing antiparallel cis Ww/Ww } 0 3 {C65R:C -> C49R:G: pairing antiparallel cis Ww/Ww } 0 4 {C50R:G -> C51R:C: adjacent_5p upward } 0 5 {C51R:C -> C50R:G: adjacent_3p downward } 0 6 {C50R:G -> C64R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C64R:C -> C50R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C51R:C -> C52R:G: adjacent_5p } 0 9 {C52R:G -> C51R:C: adjacent_3p } 0 10 {C51R:C -> C63R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C63R:G -> C51R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C52R:G -> C62R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C62R:C -> C52R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C52R:G -> C63R:G: outward } 0 15 {C63R:G -> C52R:G: outward } 0 16 {C62R:C -> C63R:G: adjacent_5p } 0 17 {C63R:G -> C62R:C: adjacent_3p } 0 18 {C63R:G -> C64R:C: adjacent_5p } 0 19 {C64R:C -> C63R:G: adjacent_3p } 0 20 {C64R:C -> C65R:C: adjacent_5p upward } 0 21 {C65R:C -> C64R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C50R:G 0 1 C51R:C 0 2 C52R:G 0 3 C53R:G 0 4 C61R:C 0 5 C62R:C 0 6 C63R:G 0 7 C64R:C 0 [Edges] 0 {C50R:G -> C51R:C: adjacent_5p upward } 0 1 {C51R:C -> C50R:G: adjacent_3p downward } 0 2 {C50R:G -> C64R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C64R:C -> C50R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C51R:C -> C52R:G: adjacent_5p } 0 5 {C52R:G -> C51R:C: adjacent_3p } 0 6 {C51R:C -> C63R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C63R:G -> C51R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C52R:G -> C53R:G: adjacent_5p upward } 0 9 {C53R:G -> C52R:G: adjacent_3p downward } 0 10 {C52R:G -> C62R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C62R:C -> C52R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C52R:G -> C63R:G: outward } 0 13 {C63R:G -> C52R:G: outward } 0 14 {C53R:G -> C61R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 15 {C61R:C -> C53R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 16 {C61R:C -> C62R:C: adjacent_5p } 0 17 {C62R:C -> C61R:C: adjacent_3p } 0 18 {C62R:C -> C63R:G: adjacent_5p } 0 19 {C63R:G -> C62R:C: adjacent_3p } 0 20 {C63R:G -> C64R:C: adjacent_5p } 0 21 {C64R:C -> C63R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D1R:G 0 1 D2R:G 0 2 D3R:C 0 3 D4R:C 0 4 D69R:G 0 5 D70R:G 0 6 D71R:C 0 7 D72R:C 0 [Edges] 0 {D1R:G -> D2R:G: adjacent_5p } 0 1 {D2R:G -> D1R:G: adjacent_3p } 0 2 {D1R:G -> D72R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D72R:C -> D1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D2R:G -> D3R:C: adjacent_5p upward } 0 5 {D3R:C -> D2R:G: adjacent_3p downward } 0 6 {D2R:G -> D71R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {D71R:C -> D2R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {D3R:C -> D4R:C: adjacent_5p } 0 9 {D4R:C -> D3R:C: adjacent_3p } 0 10 {D3R:C -> D70R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D70R:G -> D3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D4R:C -> D69R:G: pairing antiparallel cis Ww/Ww } 0 13 {D69R:G -> D4R:C: pairing antiparallel cis Ww/Ww } 0 14 {D4R:C -> D70R:G: outward } 0 15 {D70R:G -> D4R:C: outward } 0 16 {D69R:G -> D70R:G: adjacent_5p upward } 0 17 {D70R:G -> D69R:G: adjacent_3p downward } 0 18 {D70R:G -> D71R:C: adjacent_5p upward } 0 19 {D71R:C -> D70R:G: adjacent_3p downward } 0 20 {D71R:C -> D72R:C: adjacent_5p } 0 21 {D72R:C -> D71R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D2R:G 0 1 D3R:C 0 2 D4R:C 0 3 D5R:A 0 4 D68R:U 0 5 D69R:G 0 6 D70R:G 0 7 D71R:C 0 [Edges] 0 {D2R:G -> D3R:C: adjacent_5p upward } 0 1 {D3R:C -> D2R:G: adjacent_3p downward } 0 2 {D2R:G -> D71R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {D71R:C -> D2R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {D3R:C -> D4R:C: adjacent_5p } 0 5 {D4R:C -> D3R:C: adjacent_3p } 0 6 {D3R:C -> D70R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D70R:G -> D3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D4R:C -> D5R:A: adjacent_5p upward } 0 9 {D5R:A -> D4R:C: adjacent_3p downward } 0 10 {D4R:C -> D69R:G: pairing antiparallel cis Ww/Ww } 0 11 {D69R:G -> D4R:C: pairing antiparallel cis Ww/Ww } 0 12 {D4R:C -> D70R:G: outward } 0 13 {D70R:G -> D4R:C: outward } 0 14 {D5R:A -> D68R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {D68R:U -> D5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {D68R:U -> D69R:G: adjacent_5p } 0 17 {D69R:G -> D68R:U: adjacent_3p } 0 18 {D69R:G -> D70R:G: adjacent_5p upward } 0 19 {D70R:G -> D69R:G: adjacent_3p downward } 0 20 {D70R:G -> D71R:C: adjacent_5p upward } 0 21 {D71R:C -> D70R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D3R:C 0 1 D4R:C 0 2 D5R:A 0 3 D6R:G 0 4 D67R:C 0 5 D68R:U 0 6 D69R:G 0 7 D70R:G 0 [Edges] 0 {D3R:C -> D4R:C: adjacent_5p } 0 1 {D4R:C -> D3R:C: adjacent_3p } 0 2 {D3R:C -> D70R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D70R:G -> D3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D4R:C -> D5R:A: adjacent_5p upward } 0 5 {D5R:A -> D4R:C: adjacent_3p downward } 0 6 {D4R:C -> D69R:G: pairing antiparallel cis Ww/Ww } 0 7 {D69R:G -> D4R:C: pairing antiparallel cis Ww/Ww } 0 8 {D4R:C -> D70R:G: outward } 0 9 {D70R:G -> D4R:C: outward } 0 10 {D5R:A -> D6R:G: adjacent_5p upward } 0 11 {D6R:G -> D5R:A: adjacent_3p downward } 0 12 {D5R:A -> D68R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {D68R:U -> D5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {D6R:G -> D67R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D67R:C -> D6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D67R:C -> D68R:U: adjacent_5p } 0 17 {D68R:U -> D67R:C: adjacent_3p } 0 18 {D68R:U -> D69R:G: adjacent_5p } 0 19 {D69R:G -> D68R:U: adjacent_3p } 0 20 {D69R:G -> D70R:G: adjacent_5p upward } 0 21 {D70R:G -> D69R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D4R:C 0 1 D5R:A 0 2 D6R:G 0 3 D7R:G 0 4 D66R:C 0 5 D67R:C 0 6 D68R:U 0 7 D69R:G 0 [Edges] 0 {D4R:C -> D5R:A: adjacent_5p upward } 0 1 {D5R:A -> D4R:C: adjacent_3p downward } 0 2 {D4R:C -> D69R:G: pairing antiparallel cis Ww/Ww } 0 3 {D69R:G -> D4R:C: pairing antiparallel cis Ww/Ww } 0 4 {D5R:A -> D6R:G: adjacent_5p upward } 0 5 {D6R:G -> D5R:A: adjacent_3p downward } 0 6 {D5R:A -> D68R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D68R:U -> D5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D6R:G -> D7R:G: adjacent_5p upward } 0 9 {D7R:G -> D6R:G: adjacent_3p downward } 0 10 {D6R:G -> D67R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D67R:C -> D6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D7R:G -> D66R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D66R:C -> D7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D66R:C -> D67R:C: adjacent_5p upward } 0 15 {D67R:C -> D66R:C: adjacent_3p downward } 0 16 {D67R:C -> D68R:U: adjacent_5p } 0 17 {D68R:U -> D67R:C: adjacent_3p } 0 18 {D68R:U -> D69R:G: adjacent_5p } 0 19 {D69R:G -> D68R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D49R:G 0 1 D50R:G 0 2 D51R:C 0 3 D52R:G 0 4 D62R:C 0 5 D63R:G 0 6 D64R:C 0 7 D65R:C 0 [Edges] 0 {D49R:G -> D50R:G: adjacent_5p upward } 0 1 {D50R:G -> D49R:G: adjacent_3p downward } 0 2 {D49R:G -> D65R:C: pairing antiparallel cis Ww/Ww } 0 3 {D65R:C -> D49R:G: pairing antiparallel cis Ww/Ww } 0 4 {D50R:G -> D51R:C: adjacent_5p upward } 0 5 {D51R:C -> D50R:G: adjacent_3p downward } 0 6 {D50R:G -> D64R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D64R:C -> D50R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D51R:C -> D52R:G: adjacent_5p } 0 9 {D52R:G -> D51R:C: adjacent_3p } 0 10 {D51R:C -> D63R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D63R:G -> D51R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D52R:G -> D62R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D62R:C -> D52R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D52R:G -> D63R:G: outward } 0 15 {D63R:G -> D52R:G: outward } 0 16 {D62R:C -> D63R:G: adjacent_5p } 0 17 {D63R:G -> D62R:C: adjacent_3p } 0 18 {D63R:G -> D64R:C: adjacent_5p } 0 19 {D64R:C -> D63R:G: adjacent_3p } 0 20 {D64R:C -> D65R:C: adjacent_5p upward } 0 21 {D65R:C -> D64R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D50R:G 0 1 D51R:C 0 2 D52R:G 0 3 D53R:G 0 4 D61R:C 0 5 D62R:C 0 6 D63R:G 0 7 D64R:C 0 [Edges] 0 {D50R:G -> D51R:C: adjacent_5p upward } 0 1 {D51R:C -> D50R:G: adjacent_3p downward } 0 2 {D50R:G -> D64R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D64R:C -> D50R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D51R:C -> D52R:G: adjacent_5p } 0 5 {D52R:G -> D51R:C: adjacent_3p } 0 6 {D51R:C -> D63R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D63R:G -> D51R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D52R:G -> D53R:G: adjacent_5p upward } 0 9 {D53R:G -> D52R:G: adjacent_3p downward } 0 10 {D52R:G -> D62R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D62R:C -> D52R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D52R:G -> D63R:G: outward } 0 13 {D63R:G -> D52R:G: outward } 0 14 {D53R:G -> D61R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 15 {D61R:C -> D53R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 16 {D61R:C -> D62R:C: adjacent_5p } 0 17 {D62R:C -> D61R:C: adjacent_3p } 0 18 {D62R:C -> D63R:G: adjacent_5p } 0 19 {D63R:G -> D62R:C: adjacent_3p } 0 20 {D63R:G -> D64R:C: adjacent_5p } 0 21 {D64R:C -> D63R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 1R:G 0 1 2R:A 0 2 3R:C 0 3 4R:U 0 4 10R:G 0 5 11R:G 0 6 12R:U 0 7 13R:C 0 [Edges] 0 {1R:G -> 2R:A: adjacent_5p upward } 0 1 {2R:A -> 1R:G: adjacent_3p downward } 0 2 {1R:G -> 13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {13R:C -> 1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {2R:A -> 3R:C: adjacent_5p upward } 0 5 {3R:C -> 2R:A: adjacent_3p downward } 0 6 {2R:A -> 12R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {12R:U -> 2R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {3R:C -> 4R:U: adjacent_5p upward } 0 9 {4R:U -> 3R:C: adjacent_3p downward } 0 10 {3R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {11R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {4R:U -> 10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {10R:G -> 4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {10R:G -> 11R:G: adjacent_5p upward } 0 15 {11R:G -> 10R:G: adjacent_3p downward } 0 16 {11R:G -> 12R:U: adjacent_5p upward } 0 17 {12R:U -> 11R:G: adjacent_3p downward } 0 18 {12R:U -> 13R:C: adjacent_5p upward } 0 19 {13R:C -> 12R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 2R:A 0 1 3R:C 0 2 4R:U 0 3 5R:G 0 4 9R:C 0 5 10R:G 0 6 11R:G 0 7 12R:U 0 [Edges] 0 {2R:A -> 3R:C: adjacent_5p upward } 0 1 {3R:C -> 2R:A: adjacent_3p downward } 0 2 {2R:A -> 12R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {12R:U -> 2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {3R:C -> 4R:U: adjacent_5p upward } 0 5 {4R:U -> 3R:C: adjacent_3p downward } 0 6 {3R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {11R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:U -> 5R:G: adjacent_5p upward } 0 9 {5R:G -> 4R:U: adjacent_3p downward } 0 10 {4R:U -> 10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {10R:G -> 4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {5R:G -> 9R:C: pairing parallel trans 119 Ss/Ww } 0 13 {9R:C -> 5R:G: pairing parallel trans 119 Ww/Ss } 0 14 {9R:C -> 10R:G: adjacent_5p outward } 0 15 {10R:G -> 9R:C: adjacent_3p outward } 0 16 {10R:G -> 11R:G: adjacent_5p upward } 0 17 {11R:G -> 10R:G: adjacent_3p downward } 0 18 {11R:G -> 12R:U: adjacent_5p upward } 0 19 {12R:U -> 11R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 '0'12R:U 0 1 '0'13R:G 0 2 '0'14R:C 0 3 '0'15R:C 0 4 '0'528R:G 0 5 '0'529R:G 0 6 '0'530R:C 0 7 '0'531R:G 0 [Edges] 0 {'0'12R:U -> '0'13R:G: adjacent_5p } 0 1 {'0'13R:G -> '0'12R:U: adjacent_3p } 0 2 {'0'12R:U -> '0'531R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 3 {'0'531R:G -> '0'12R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 4 {'0'13R:G -> '0'14R:C: adjacent_5p upward } 0 5 {'0'14R:C -> '0'13R:G: adjacent_3p downward } 0 6 {'0'13R:G -> '0'530R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'530R:C -> '0'13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'14R:C -> '0'15R:C: adjacent_5p upward } 0 9 {'0'15R:C -> '0'14R:C: adjacent_3p downward } 0 10 {'0'14R:C -> '0'529R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'529R:G -> '0'14R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'15R:C -> '0'528R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'528R:G -> '0'15R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'528R:G -> '0'529R:G: adjacent_5p upward } 0 15 {'0'529R:G -> '0'528R:G: adjacent_3p downward } 0 16 {'0'529R:G -> '0'530R:C: adjacent_5p upward } 0 17 {'0'530R:C -> '0'529R:G: adjacent_3p downward } 0 18 {'0'530R:C -> '0'531R:G: adjacent_5p upward } 0 19 {'0'531R:G -> '0'530R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'13R:G 0 1 '0'14R:C 0 2 '0'15R:C 0 3 '0'16R:A 0 4 '0'527R:U 0 5 '0'528R:G 0 6 '0'529R:G 0 7 '0'530R:C 0 [Edges] 0 {'0'13R:G -> '0'14R:C: adjacent_5p upward } 0 1 {'0'14R:C -> '0'13R:G: adjacent_3p downward } 0 2 {'0'13R:G -> '0'530R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'530R:C -> '0'13R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'14R:C -> '0'15R:C: adjacent_5p upward } 0 5 {'0'15R:C -> '0'14R:C: adjacent_3p downward } 0 6 {'0'14R:C -> '0'529R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'529R:G -> '0'14R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'15R:C -> '0'16R:A: adjacent_5p upward } 0 9 {'0'16R:A -> '0'15R:C: adjacent_3p downward } 0 10 {'0'15R:C -> '0'528R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'528R:G -> '0'15R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'16R:A -> '0'527R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'527R:U -> '0'16R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'16R:A -> '0'528R:G: outward } 0 15 {'0'528R:G -> '0'16R:A: outward } 0 16 {'0'527R:U -> '0'528R:G: adjacent_5p } 0 17 {'0'528R:G -> '0'527R:U: adjacent_3p } 0 18 {'0'528R:G -> '0'529R:G: adjacent_5p upward } 0 19 {'0'529R:G -> '0'528R:G: adjacent_3p downward } 0 20 {'0'529R:G -> '0'530R:C: adjacent_5p upward } 0 21 {'0'530R:C -> '0'529R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'14R:C 0 1 '0'15R:C 0 2 '0'16R:A 0 3 '0'17R:G 0 4 '0'526R:U 0 5 '0'527R:U 0 6 '0'528R:G 0 7 '0'529R:G 0 [Edges] 0 {'0'14R:C -> '0'15R:C: adjacent_5p upward } 0 1 {'0'15R:C -> '0'14R:C: adjacent_3p downward } 0 2 {'0'14R:C -> '0'529R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'529R:G -> '0'14R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'15R:C -> '0'16R:A: adjacent_5p upward } 0 5 {'0'16R:A -> '0'15R:C: adjacent_3p downward } 0 6 {'0'15R:C -> '0'528R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'528R:G -> '0'15R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'16R:A -> '0'17R:G: adjacent_5p upward } 0 9 {'0'17R:G -> '0'16R:A: adjacent_3p downward } 0 10 {'0'16R:A -> '0'527R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'527R:U -> '0'16R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'16R:A -> '0'528R:G: outward } 0 13 {'0'528R:G -> '0'16R:A: outward } 0 14 {'0'17R:G -> '0'526R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {'0'526R:U -> '0'17R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {'0'526R:U -> '0'527R:U: adjacent_5p } 0 17 {'0'527R:U -> '0'526R:U: adjacent_3p } 0 18 {'0'527R:U -> '0'528R:G: adjacent_5p } 0 19 {'0'528R:G -> '0'527R:U: adjacent_3p } 0 20 {'0'528R:G -> '0'529R:G: adjacent_5p upward } 0 21 {'0'529R:G -> '0'528R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'15R:C 0 1 '0'16R:A 0 2 '0'17R:G 0 3 '0'18R:C 0 4 '0'525R:G 0 5 '0'526R:U 0 6 '0'527R:U 0 7 '0'528R:G 0 [Edges] 0 {'0'15R:C -> '0'16R:A: adjacent_5p upward } 0 1 {'0'16R:A -> '0'15R:C: adjacent_3p downward } 0 2 {'0'15R:C -> '0'528R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'528R:G -> '0'15R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'16R:A -> '0'17R:G: adjacent_5p upward } 0 5 {'0'17R:G -> '0'16R:A: adjacent_3p downward } 0 6 {'0'16R:A -> '0'527R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'527R:U -> '0'16R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'16R:A -> '0'528R:G: outward } 0 9 {'0'528R:G -> '0'16R:A: outward } 0 10 {'0'17R:G -> '0'18R:C: adjacent_5p upward } 0 11 {'0'18R:C -> '0'17R:G: adjacent_3p downward } 0 12 {'0'17R:G -> '0'526R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {'0'526R:U -> '0'17R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {'0'18R:C -> '0'525R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'525R:G -> '0'18R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'525R:G -> '0'526R:U: adjacent_5p upward } 0 17 {'0'526R:U -> '0'525R:G: adjacent_3p downward } 0 18 {'0'526R:U -> '0'527R:U: adjacent_5p } 0 19 {'0'527R:U -> '0'526R:U: adjacent_3p } 0 20 {'0'527R:U -> '0'528R:G: adjacent_5p } 0 21 {'0'528R:G -> '0'527R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'16R:A 0 1 '0'17R:G 0 2 '0'18R:C 0 3 '0'19R:U 0 4 '0'524R:A 0 5 '0'525R:G 0 6 '0'526R:U 0 7 '0'527R:U 0 [Edges] 0 {'0'16R:A -> '0'17R:G: adjacent_5p upward } 0 1 {'0'17R:G -> '0'16R:A: adjacent_3p downward } 0 2 {'0'16R:A -> '0'527R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'527R:U -> '0'16R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'17R:G -> '0'18R:C: adjacent_5p upward } 0 5 {'0'18R:C -> '0'17R:G: adjacent_3p downward } 0 6 {'0'17R:G -> '0'526R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'526R:U -> '0'17R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'18R:C -> '0'19R:U: adjacent_5p upward } 0 9 {'0'19R:U -> '0'18R:C: adjacent_3p downward } 0 10 {'0'18R:C -> '0'525R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'525R:G -> '0'18R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'19R:U -> '0'524R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'524R:A -> '0'19R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'524R:A -> '0'525R:G: adjacent_5p upward } 0 15 {'0'525R:G -> '0'524R:A: adjacent_3p downward } 0 16 {'0'525R:G -> '0'526R:U: adjacent_5p upward } 0 17 {'0'526R:U -> '0'525R:G: adjacent_3p downward } 0 18 {'0'526R:U -> '0'527R:U: adjacent_5p } 0 19 {'0'527R:U -> '0'526R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'17R:G 0 1 '0'18R:C 0 2 '0'19R:U 0 3 '0'20R:G 0 4 '0'523R:C 0 5 '0'524R:A 0 6 '0'525R:G 0 7 '0'526R:U 0 [Edges] 0 {'0'17R:G -> '0'18R:C: adjacent_5p upward } 0 1 {'0'18R:C -> '0'17R:G: adjacent_3p downward } 0 2 {'0'17R:G -> '0'526R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'526R:U -> '0'17R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'18R:C -> '0'19R:U: adjacent_5p upward } 0 5 {'0'19R:U -> '0'18R:C: adjacent_3p downward } 0 6 {'0'18R:C -> '0'525R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'525R:G -> '0'18R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'19R:U -> '0'20R:G: adjacent_5p upward } 0 9 {'0'20R:G -> '0'19R:U: adjacent_3p downward } 0 10 {'0'19R:U -> '0'524R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'524R:A -> '0'19R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'20R:G -> '0'523R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'523R:C -> '0'20R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'20R:G -> '0'524R:A: outward } 0 15 {'0'524R:A -> '0'20R:G: outward } 0 16 {'0'523R:C -> '0'524R:A: adjacent_5p upward } 0 17 {'0'524R:A -> '0'523R:C: adjacent_3p downward } 0 18 {'0'524R:A -> '0'525R:G: adjacent_5p upward } 0 19 {'0'525R:G -> '0'524R:A: adjacent_3p downward } 0 20 {'0'525R:G -> '0'526R:U: adjacent_5p upward } 0 21 {'0'526R:U -> '0'525R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'18R:C 0 1 '0'19R:U 0 2 '0'20R:G 0 3 '0'21R:G 0 4 '0'522R:U 0 5 '0'523R:C 0 6 '0'524R:A 0 7 '0'525R:G 0 [Edges] 0 {'0'18R:C -> '0'19R:U: adjacent_5p upward } 0 1 {'0'19R:U -> '0'18R:C: adjacent_3p downward } 0 2 {'0'18R:C -> '0'525R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'525R:G -> '0'18R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'19R:U -> '0'20R:G: adjacent_5p upward } 0 5 {'0'20R:G -> '0'19R:U: adjacent_3p downward } 0 6 {'0'19R:U -> '0'524R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'524R:A -> '0'19R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'20R:G -> '0'21R:G: adjacent_5p upward } 0 9 {'0'21R:G -> '0'20R:G: adjacent_3p downward } 0 10 {'0'20R:G -> '0'523R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'523R:C -> '0'20R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'20R:G -> '0'524R:A: outward } 0 13 {'0'524R:A -> '0'20R:G: outward } 0 14 {'0'21R:G -> '0'522R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {'0'522R:U -> '0'21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {'0'522R:U -> '0'523R:C: adjacent_5p } 0 17 {'0'523R:C -> '0'522R:U: adjacent_3p } 0 18 {'0'523R:C -> '0'524R:A: adjacent_5p upward } 0 19 {'0'524R:A -> '0'523R:C: adjacent_3p downward } 0 20 {'0'524R:A -> '0'525R:G: adjacent_5p upward } 0 21 {'0'525R:G -> '0'524R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'19R:U 0 1 '0'20R:G 0 2 '0'21R:G 0 3 '0'22R:U 0 4 '0'521R:A 0 5 '0'522R:U 0 6 '0'523R:C 0 7 '0'524R:A 0 [Edges] 0 {'0'19R:U -> '0'20R:G: adjacent_5p upward } 0 1 {'0'20R:G -> '0'19R:U: adjacent_3p downward } 0 2 {'0'19R:U -> '0'524R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'524R:A -> '0'19R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'20R:G -> '0'21R:G: adjacent_5p upward } 0 5 {'0'21R:G -> '0'20R:G: adjacent_3p downward } 0 6 {'0'20R:G -> '0'523R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'523R:C -> '0'20R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'20R:G -> '0'524R:A: outward } 0 9 {'0'524R:A -> '0'20R:G: outward } 0 10 {'0'21R:G -> '0'22R:U: adjacent_5p upward } 0 11 {'0'22R:U -> '0'21R:G: adjacent_3p downward } 0 12 {'0'21R:G -> '0'522R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {'0'522R:U -> '0'21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {'0'22R:U -> '0'521R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 15 {'0'521R:A -> '0'22R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 16 {'0'521R:A -> '0'522R:U: adjacent_5p } 0 17 {'0'522R:U -> '0'521R:A: adjacent_3p } 0 18 {'0'522R:U -> '0'523R:C: adjacent_5p } 0 19 {'0'523R:C -> '0'522R:U: adjacent_3p } 0 20 {'0'523R:C -> '0'524R:A: adjacent_5p upward } 0 21 {'0'524R:A -> '0'523R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'20R:G 0 1 '0'21R:G 0 2 '0'22R:U 0 3 '0'23R:G 0 4 '0'520R:A 0 5 '0'521R:A 0 6 '0'522R:U 0 7 '0'523R:C 0 [Edges] 0 {'0'20R:G -> '0'21R:G: adjacent_5p upward } 0 1 {'0'21R:G -> '0'20R:G: adjacent_3p downward } 0 2 {'0'20R:G -> '0'523R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'523R:C -> '0'20R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'21R:G -> '0'22R:U: adjacent_5p upward } 0 5 {'0'22R:U -> '0'21R:G: adjacent_3p downward } 0 6 {'0'21R:G -> '0'522R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'522R:U -> '0'21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'22R:U -> '0'23R:G: adjacent_5p upward } 0 9 {'0'23R:G -> '0'22R:U: adjacent_3p downward } 0 10 {'0'22R:U -> '0'521R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 11 {'0'521R:A -> '0'22R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 12 {'0'23R:G -> '0'520R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {'0'520R:A -> '0'23R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {'0'520R:A -> '0'521R:A: adjacent_5p upward } 0 15 {'0'521R:A -> '0'520R:A: adjacent_3p downward } 0 16 {'0'521R:A -> '0'522R:U: adjacent_5p } 0 17 {'0'522R:U -> '0'521R:A: adjacent_3p } 0 18 {'0'522R:U -> '0'523R:C: adjacent_5p } 0 19 {'0'523R:C -> '0'522R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'21R:G 0 1 '0'22R:U 0 2 '0'23R:G 0 3 '0'24R:G 0 4 '0'519R:A 0 5 '0'520R:A 0 6 '0'521R:A 0 7 '0'522R:U 0 [Edges] 0 {'0'21R:G -> '0'22R:U: adjacent_5p upward } 0 1 {'0'22R:U -> '0'21R:G: adjacent_3p downward } 0 2 {'0'21R:G -> '0'522R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'522R:U -> '0'21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'22R:U -> '0'23R:G: adjacent_5p upward } 0 5 {'0'23R:G -> '0'22R:U: adjacent_3p downward } 0 6 {'0'22R:U -> '0'521R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 7 {'0'521R:A -> '0'22R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 8 {'0'23R:G -> '0'24R:G: adjacent_5p upward } 0 9 {'0'24R:G -> '0'23R:G: adjacent_3p downward } 0 10 {'0'23R:G -> '0'520R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {'0'520R:A -> '0'23R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {'0'24R:G -> '0'519R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {'0'519R:A -> '0'24R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {'0'519R:A -> '0'520R:A: adjacent_5p upward } 0 15 {'0'520R:A -> '0'519R:A: adjacent_3p downward } 0 16 {'0'520R:A -> '0'521R:A: adjacent_5p upward } 0 17 {'0'521R:A -> '0'520R:A: adjacent_3p downward } 0 18 {'0'521R:A -> '0'522R:U: adjacent_5p } 0 19 {'0'522R:U -> '0'521R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'22R:U 0 1 '0'23R:G 0 2 '0'24R:G 0 3 '0'25R:A 0 4 '0'518R:G 0 5 '0'519R:A 0 6 '0'520R:A 0 7 '0'521R:A 0 [Edges] 0 {'0'22R:U -> '0'23R:G: adjacent_5p upward } 0 1 {'0'23R:G -> '0'22R:U: adjacent_3p downward } 0 2 {'0'22R:U -> '0'521R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 3 {'0'521R:A -> '0'22R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 4 {'0'23R:G -> '0'24R:G: adjacent_5p upward } 0 5 {'0'24R:G -> '0'23R:G: adjacent_3p downward } 0 6 {'0'23R:G -> '0'520R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {'0'520R:A -> '0'23R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {'0'24R:G -> '0'25R:A: adjacent_5p } 0 9 {'0'25R:A -> '0'24R:G: adjacent_3p } 0 10 {'0'24R:G -> '0'518R:G: inward } 0 11 {'0'518R:G -> '0'24R:G: inward } 0 12 {'0'24R:G -> '0'519R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {'0'519R:A -> '0'24R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {'0'25R:A -> '0'518R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {'0'518R:G -> '0'25R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {'0'25R:A -> '0'519R:A: outward } 0 17 {'0'519R:A -> '0'25R:A: outward } 0 18 {'0'518R:G -> '0'519R:A: adjacent_5p } 0 19 {'0'519R:A -> '0'518R:G: adjacent_3p } 0 20 {'0'519R:A -> '0'520R:A: adjacent_5p upward } 0 21 {'0'520R:A -> '0'519R:A: adjacent_3p downward } 0 22 {'0'520R:A -> '0'521R:A: adjacent_5p upward } 0 23 {'0'521R:A -> '0'520R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 12 . . 3 . . 9 . 14 16 . . 4 . . 11 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 '0'23R:G 0 1 '0'24R:G 0 2 '0'25R:A 0 3 '0'26R:U 0 4 '0'517R:U 0 5 '0'518R:G 0 6 '0'519R:A 0 7 '0'520R:A 0 [Edges] 0 {'0'23R:G -> '0'24R:G: adjacent_5p upward } 0 1 {'0'24R:G -> '0'23R:G: adjacent_3p downward } 0 2 {'0'23R:G -> '0'520R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {'0'520R:A -> '0'23R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {'0'24R:G -> '0'25R:A: adjacent_5p } 0 5 {'0'25R:A -> '0'24R:G: adjacent_3p } 0 6 {'0'24R:G -> '0'518R:G: inward } 0 7 {'0'518R:G -> '0'24R:G: inward } 0 8 {'0'24R:G -> '0'519R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 9 {'0'519R:A -> '0'24R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 10 {'0'25R:A -> '0'26R:U: adjacent_5p upward } 0 11 {'0'26R:U -> '0'25R:A: adjacent_3p downward } 0 12 {'0'25R:A -> '0'518R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {'0'518R:G -> '0'25R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {'0'25R:A -> '0'519R:A: outward } 0 15 {'0'519R:A -> '0'25R:A: outward } 0 16 {'0'26R:U -> '0'517R:U: pairing antiparallel cis XVI Ww/Ws } 0 17 {'0'517R:U -> '0'26R:U: pairing antiparallel cis XVI Ws/Ww } 0 18 {'0'517R:U -> '0'518R:G: adjacent_5p upward } 0 19 {'0'518R:G -> '0'517R:U: adjacent_3p downward } 0 20 {'0'518R:G -> '0'519R:A: adjacent_5p } 0 21 {'0'519R:A -> '0'518R:G: adjacent_3p } 0 22 {'0'519R:A -> '0'520R:A: adjacent_5p upward } 0 23 {'0'520R:A -> '0'519R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . 7 13 . 19 . 20 . 6 . 9 15 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 '0'24R:G 0 1 '0'25R:A 0 2 '0'26R:U 0 3 '0'27R:U 0 4 '0'516R:A 0 5 '0'517R:U 0 6 '0'518R:G 0 7 '0'519R:A 0 [Edges] 0 {'0'24R:G -> '0'25R:A: adjacent_5p } 0 1 {'0'25R:A -> '0'24R:G: adjacent_3p } 0 2 {'0'24R:G -> '0'518R:G: inward } 0 3 {'0'518R:G -> '0'24R:G: inward } 0 4 {'0'24R:G -> '0'519R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 5 {'0'519R:A -> '0'24R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 6 {'0'25R:A -> '0'26R:U: adjacent_5p upward } 0 7 {'0'26R:U -> '0'25R:A: adjacent_3p downward } 0 8 {'0'25R:A -> '0'518R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {'0'518R:G -> '0'25R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {'0'25R:A -> '0'519R:A: outward } 0 11 {'0'519R:A -> '0'25R:A: outward } 0 12 {'0'26R:U -> '0'27R:U: adjacent_5p upward } 0 13 {'0'27R:U -> '0'26R:U: adjacent_3p downward } 0 14 {'0'26R:U -> '0'517R:U: pairing antiparallel cis XVI Ww/Ws } 0 15 {'0'517R:U -> '0'26R:U: pairing antiparallel cis XVI Ws/Ww } 0 16 {'0'27R:U -> '0'516R:A: pairing antiparallel cis XX Ww/Ww } 0 17 {'0'516R:A -> '0'27R:U: pairing antiparallel cis XX Ww/Ww } 0 18 {'0'516R:A -> '0'517R:U: adjacent_5p upward } 0 19 {'0'517R:U -> '0'516R:A: adjacent_3p downward } 0 20 {'0'517R:U -> '0'518R:G: adjacent_5p upward } 0 21 {'0'518R:G -> '0'517R:U: adjacent_3p downward } 0 22 {'0'518R:G -> '0'519R:A: adjacent_5p } 0 23 {'0'519R:A -> '0'518R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 18 . . 5 . . 15 . 19 . 20 . 6 3 9 . . . 21 . 22 7 5 11 . . . . 23 . [GraphModel] [Vertices] 0 '0'30R:U 0 1 '0'31R:C 0 2 '0'32R:G 0 3 '0'33R:G 0 4 '0'450R:C 0 5 '0'451R:C 0 6 '0'452R:G 0 7 '0'453R:A 0 [Edges] 0 {'0'30R:U -> '0'31R:C: adjacent_5p } 0 1 {'0'31R:C -> '0'30R:U: adjacent_3p } 0 2 {'0'30R:U -> '0'453R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {'0'453R:A -> '0'30R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {'0'31R:C -> '0'32R:G: adjacent_5p } 0 5 {'0'32R:G -> '0'31R:C: adjacent_3p } 0 6 {'0'32R:G -> '0'33R:G: adjacent_5p upward } 0 7 {'0'33R:G -> '0'32R:G: adjacent_3p downward } 0 8 {'0'32R:G -> '0'451R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'451R:C -> '0'32R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'33R:G -> '0'450R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'450R:C -> '0'33R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'450R:C -> '0'451R:C: adjacent_5p } 0 13 {'0'451R:C -> '0'450R:C: adjacent_3p } 0 14 {'0'451R:C -> '0'452R:G: adjacent_5p upward } 0 15 {'0'452R:G -> '0'451R:C: adjacent_3p downward } 0 16 {'0'452R:G -> '0'453R:A: adjacent_5p } 0 17 {'0'453R:A -> '0'452R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '0'34R:C 0 1 '0'35R:U 0 2 '0'36R:C 0 3 '0'37R:A 0 4 '0'445R:U 0 5 '0'446R:G 0 6 '0'447R:A 0 7 '0'448R:G 0 [Edges] 0 {'0'34R:C -> '0'35R:U: adjacent_5p upward } 0 1 {'0'35R:U -> '0'34R:C: adjacent_3p downward } 0 2 {'0'34R:C -> '0'448R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'448R:G -> '0'34R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'35R:U -> '0'36R:C: adjacent_5p upward } 0 5 {'0'36R:C -> '0'35R:U: adjacent_3p downward } 0 6 {'0'35R:U -> '0'447R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'447R:A -> '0'35R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'36R:C -> '0'37R:A: adjacent_5p upward } 0 9 {'0'37R:A -> '0'36R:C: adjacent_3p downward } 0 10 {'0'36R:C -> '0'446R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'446R:G -> '0'36R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'37R:A -> '0'445R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'445R:U -> '0'37R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'37R:A -> '0'446R:G: outward } 0 15 {'0'446R:G -> '0'37R:A: outward } 0 16 {'0'445R:U -> '0'446R:G: adjacent_5p upward } 0 17 {'0'446R:G -> '0'445R:U: adjacent_3p downward } 0 18 {'0'446R:G -> '0'447R:A: adjacent_5p upward } 0 19 {'0'447R:A -> '0'446R:G: adjacent_3p downward } 0 20 {'0'447R:A -> '0'448R:G: adjacent_5p upward } 0 21 {'0'448R:G -> '0'447R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'35R:U 0 1 '0'36R:C 0 2 '0'37R:A 0 3 '0'38R:G 0 4 '0'444R:C 0 5 '0'445R:U 0 6 '0'446R:G 0 7 '0'447R:A 0 [Edges] 0 {'0'35R:U -> '0'36R:C: adjacent_5p upward } 0 1 {'0'36R:C -> '0'35R:U: adjacent_3p downward } 0 2 {'0'35R:U -> '0'447R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'447R:A -> '0'35R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'36R:C -> '0'37R:A: adjacent_5p upward } 0 5 {'0'37R:A -> '0'36R:C: adjacent_3p downward } 0 6 {'0'36R:C -> '0'446R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'446R:G -> '0'36R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'37R:A -> '0'38R:G: adjacent_5p upward } 0 9 {'0'38R:G -> '0'37R:A: adjacent_3p downward } 0 10 {'0'37R:A -> '0'445R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'445R:U -> '0'37R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'37R:A -> '0'446R:G: outward } 0 13 {'0'446R:G -> '0'37R:A: outward } 0 14 {'0'38R:G -> '0'444R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'444R:C -> '0'38R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'444R:C -> '0'445R:U: adjacent_5p upward } 0 17 {'0'445R:U -> '0'444R:C: adjacent_3p downward } 0 18 {'0'445R:U -> '0'446R:G: adjacent_5p upward } 0 19 {'0'446R:G -> '0'445R:U: adjacent_3p downward } 0 20 {'0'446R:G -> '0'447R:A: adjacent_5p upward } 0 21 {'0'447R:A -> '0'446R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'36R:C 0 1 '0'37R:A 0 2 '0'38R:G 0 3 '0'39R:G 0 4 '0'443R:C 0 5 '0'444R:C 0 6 '0'445R:U 0 7 '0'446R:G 0 [Edges] 0 {'0'36R:C -> '0'37R:A: adjacent_5p upward } 0 1 {'0'37R:A -> '0'36R:C: adjacent_3p downward } 0 2 {'0'36R:C -> '0'446R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'446R:G -> '0'36R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'37R:A -> '0'38R:G: adjacent_5p upward } 0 5 {'0'38R:G -> '0'37R:A: adjacent_3p downward } 0 6 {'0'37R:A -> '0'445R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'445R:U -> '0'37R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'37R:A -> '0'446R:G: outward } 0 9 {'0'446R:G -> '0'37R:A: outward } 0 10 {'0'38R:G -> '0'39R:G: adjacent_5p upward } 0 11 {'0'39R:G -> '0'38R:G: adjacent_3p downward } 0 12 {'0'38R:G -> '0'444R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'444R:C -> '0'38R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'39R:G -> '0'443R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'443R:C -> '0'39R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'443R:C -> '0'444R:C: adjacent_5p } 0 17 {'0'444R:C -> '0'443R:C: adjacent_3p } 0 18 {'0'444R:C -> '0'445R:U: adjacent_5p upward } 0 19 {'0'445R:U -> '0'444R:C: adjacent_3p downward } 0 20 {'0'445R:U -> '0'446R:G: adjacent_5p upward } 0 21 {'0'446R:G -> '0'445R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'37R:A 0 1 '0'38R:G 0 2 '0'39R:G 0 3 '0'40R:C 0 4 '0'442R:A 0 5 '0'443R:C 0 6 '0'444R:C 0 7 '0'445R:U 0 [Edges] 0 {'0'37R:A -> '0'38R:G: adjacent_5p upward } 0 1 {'0'38R:G -> '0'37R:A: adjacent_3p downward } 0 2 {'0'37R:A -> '0'445R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'445R:U -> '0'37R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'38R:G -> '0'39R:G: adjacent_5p upward } 0 5 {'0'39R:G -> '0'38R:G: adjacent_3p downward } 0 6 {'0'38R:G -> '0'444R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'444R:C -> '0'38R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'39R:G -> '0'40R:C: adjacent_5p upward } 0 9 {'0'40R:C -> '0'39R:G: adjacent_3p downward } 0 10 {'0'39R:G -> '0'443R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'443R:C -> '0'39R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'40R:C -> '0'442R:A: pairing antiparallel cis one_hbond 78 Ww/Wh } 0 13 {'0'442R:A -> '0'40R:C: pairing antiparallel cis one_hbond 78 Wh/Ww } 0 14 {'0'442R:A -> '0'443R:C: adjacent_5p upward } 0 15 {'0'443R:C -> '0'442R:A: adjacent_3p downward } 0 16 {'0'443R:C -> '0'444R:C: adjacent_5p } 0 17 {'0'444R:C -> '0'443R:C: adjacent_3p } 0 18 {'0'444R:C -> '0'445R:U: adjacent_5p upward } 0 19 {'0'445R:U -> '0'444R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'49R:A 0 1 '0'50R:G 0 2 '0'51R:G 0 3 '0'52R:A 0 4 '0'109R:U 0 5 '0'110R:C 0 6 '0'111R:C 0 7 '0'112R:G 0 [Edges] 0 {'0'49R:A -> '0'50R:G: adjacent_5p upward } 0 1 {'0'50R:G -> '0'49R:A: adjacent_3p downward } 0 2 {'0'49R:A -> '0'112R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'112R:G -> '0'49R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'50R:G -> '0'51R:G: adjacent_5p upward } 0 5 {'0'51R:G -> '0'50R:G: adjacent_3p downward } 0 6 {'0'50R:G -> '0'111R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'111R:C -> '0'50R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'51R:G -> '0'52R:A: adjacent_5p upward } 0 9 {'0'52R:A -> '0'51R:G: adjacent_3p downward } 0 10 {'0'51R:G -> '0'110R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'110R:C -> '0'51R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'52R:A -> '0'109R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'109R:U -> '0'52R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'109R:U -> '0'110R:C: adjacent_5p upward } 0 15 {'0'110R:C -> '0'109R:U: adjacent_3p downward } 0 16 {'0'110R:C -> '0'111R:C: adjacent_5p upward } 0 17 {'0'111R:C -> '0'110R:C: adjacent_3p downward } 0 18 {'0'111R:C -> '0'112R:G: adjacent_5p upward } 0 19 {'0'112R:G -> '0'111R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'57R:C 0 1 '0'58R:C 0 2 '0'59R:A 0 3 '0'60R:A 0 4 '0'86R:A 0 5 '0'87R:C 0 6 '0'88R:G 0 7 '0'89R:G 0 [Edges] 0 {'0'57R:C -> '0'58R:C: adjacent_5p upward } 0 1 {'0'58R:C -> '0'57R:C: adjacent_3p downward } 0 2 {'0'57R:C -> '0'89R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'89R:G -> '0'57R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'58R:C -> '0'59R:A: adjacent_5p } 0 5 {'0'59R:A -> '0'58R:C: adjacent_3p } 0 6 {'0'58R:C -> '0'88R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'88R:G -> '0'58R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'59R:A -> '0'60R:A: adjacent_5p } 0 9 {'0'60R:A -> '0'59R:A: adjacent_3p } 0 10 {'0'60R:A -> '0'86R:A: pairing parallel trans I Ww/Ww } 0 11 {'0'86R:A -> '0'60R:A: pairing parallel trans I Ww/Ww } 0 12 {'0'86R:A -> '0'87R:C: adjacent_5p } 0 13 {'0'87R:C -> '0'86R:A: adjacent_3p } 0 14 {'0'87R:C -> '0'88R:G: adjacent_5p } 0 15 {'0'88R:G -> '0'87R:C: adjacent_3p } 0 16 {'0'88R:G -> '0'89R:G: adjacent_5p upward } 0 17 {'0'89R:G -> '0'88R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '0'58R:C 0 1 '0'59R:A 0 2 '0'60R:A 0 3 '0'61R:G 0 4 '0'85R:C 0 5 '0'86R:A 0 6 '0'87R:C 0 7 '0'88R:G 0 [Edges] 0 {'0'58R:C -> '0'59R:A: adjacent_5p } 0 1 {'0'59R:A -> '0'58R:C: adjacent_3p } 0 2 {'0'58R:C -> '0'88R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'88R:G -> '0'58R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'59R:A -> '0'60R:A: adjacent_5p } 0 5 {'0'60R:A -> '0'59R:A: adjacent_3p } 0 6 {'0'60R:A -> '0'61R:G: adjacent_5p upward } 0 7 {'0'61R:G -> '0'60R:A: adjacent_3p downward } 0 8 {'0'60R:A -> '0'86R:A: pairing parallel trans I Ww/Ww } 0 9 {'0'86R:A -> '0'60R:A: pairing parallel trans I Ww/Ww } 0 10 {'0'61R:G -> '0'85R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'85R:C -> '0'61R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'85R:C -> '0'86R:A: adjacent_5p inward } 0 13 {'0'86R:A -> '0'85R:C: adjacent_3p inward } 0 14 {'0'86R:A -> '0'87R:C: adjacent_5p } 0 15 {'0'87R:C -> '0'86R:A: adjacent_3p } 0 16 {'0'87R:C -> '0'88R:G: adjacent_5p } 0 17 {'0'88R:G -> '0'87R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '0'63R:U 0 1 '0'64R:G 0 2 '0'65R:C 0 3 '0'66R:G 0 4 '0'67R:A 0 5 '0'68R:U 0 6 '0'69R:A 0 7 '0'70R:A 0 [Edges] 0 {'0'63R:U -> '0'64R:G: adjacent_5p upward } 0 1 {'0'64R:G -> '0'63R:U: adjacent_3p downward } 0 2 {'0'63R:U -> '0'70R:A: pairing parallel cis XXIII Ww/Hh } 0 3 {'0'70R:A -> '0'63R:U: pairing parallel cis XXIII Hh/Ww } 0 4 {'0'64R:G -> '0'65R:C: adjacent_5p upward } 0 5 {'0'65R:C -> '0'64R:G: adjacent_3p downward } 0 6 {'0'64R:G -> '0'70R:A: downward } 0 7 {'0'70R:A -> '0'64R:G: upward } 0 8 {'0'65R:C -> '0'66R:G: adjacent_5p upward } 0 9 {'0'66R:G -> '0'65R:C: adjacent_3p downward } 0 10 {'0'66R:G -> '0'67R:A: adjacent_5p pairing antiparallel cis one_hbond 55 Sw/Ww } 0 11 {'0'67R:A -> '0'66R:G: adjacent_3p pairing antiparallel cis one_hbond 55 Ww/Sw } 0 12 {'0'67R:A -> '0'68R:U: adjacent_5p } 0 13 {'0'68R:U -> '0'67R:A: adjacent_3p } 0 14 {'0'67R:A -> '0'69R:A: upward } 0 15 {'0'69R:A -> '0'67R:A: downward } 0 16 {'0'68R:U -> '0'69R:A: adjacent_5p } 0 17 {'0'69R:A -> '0'68R:U: adjacent_3p } 0 18 {'0'69R:A -> '0'70R:A: adjacent_5p } 0 19 {'0'70R:A -> '0'69R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . 6 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 14 . 5 . . . . 13 . 16 . 6 . . . . 15 17 . 18 7 3 7 . . . . 19 . [GraphModel] [Vertices] 0 '0'71R:G 0 1 '0'72R:C 0 2 '0'73R:C 0 3 '0'74R:A 0 4 '0'103R:U 0 5 '0'104R:G 0 6 '0'105R:G 0 7 '0'106R:A 0 [Edges] 0 {'0'71R:G -> '0'72R:C: adjacent_5p } 0 1 {'0'72R:C -> '0'71R:G: adjacent_3p } 0 2 {'0'71R:G -> '0'106R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {'0'106R:A -> '0'71R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {'0'72R:C -> '0'73R:C: adjacent_5p } 0 5 {'0'73R:C -> '0'72R:C: adjacent_3p } 0 6 {'0'72R:C -> '0'105R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'105R:G -> '0'72R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'73R:C -> '0'74R:A: adjacent_5p } 0 9 {'0'74R:A -> '0'73R:C: adjacent_3p } 0 10 {'0'73R:C -> '0'104R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'104R:G -> '0'73R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'74R:A -> '0'103R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'103R:U -> '0'74R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'74R:A -> '0'104R:G: outward } 0 15 {'0'104R:G -> '0'74R:A: outward } 0 16 {'0'103R:U -> '0'104R:G: adjacent_5p upward } 0 17 {'0'104R:G -> '0'103R:U: adjacent_3p downward } 0 18 {'0'104R:G -> '0'105R:G: adjacent_5p upward } 0 19 {'0'105R:G -> '0'104R:G: adjacent_3p downward } 0 20 {'0'105R:G -> '0'106R:A: adjacent_5p upward } 0 21 {'0'106R:A -> '0'105R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'72R:C 0 1 '0'73R:C 0 2 '0'74R:A 0 3 '0'75R:U 0 4 '0'102R:A 0 5 '0'103R:U 0 6 '0'104R:G 0 7 '0'105R:G 0 [Edges] 0 {'0'72R:C -> '0'73R:C: adjacent_5p } 0 1 {'0'73R:C -> '0'72R:C: adjacent_3p } 0 2 {'0'72R:C -> '0'105R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'105R:G -> '0'72R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'73R:C -> '0'74R:A: adjacent_5p } 0 5 {'0'74R:A -> '0'73R:C: adjacent_3p } 0 6 {'0'73R:C -> '0'104R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'104R:G -> '0'73R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'74R:A -> '0'75R:U: adjacent_5p upward } 0 9 {'0'75R:U -> '0'74R:A: adjacent_3p downward } 0 10 {'0'74R:A -> '0'103R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'103R:U -> '0'74R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'74R:A -> '0'104R:G: outward } 0 13 {'0'104R:G -> '0'74R:A: outward } 0 14 {'0'75R:U -> '0'102R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'102R:A -> '0'75R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'102R:A -> '0'103R:U: adjacent_5p upward } 0 17 {'0'103R:U -> '0'102R:A: adjacent_3p downward } 0 18 {'0'103R:U -> '0'104R:G: adjacent_5p upward } 0 19 {'0'104R:G -> '0'103R:U: adjacent_3p downward } 0 20 {'0'104R:G -> '0'105R:G: adjacent_5p upward } 0 21 {'0'105R:G -> '0'104R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'73R:C 0 1 '0'74R:A 0 2 '0'75R:U 0 3 '0'76R:G 0 4 '0'101R:C 0 5 '0'102R:A 0 6 '0'103R:U 0 7 '0'104R:G 0 [Edges] 0 {'0'73R:C -> '0'74R:A: adjacent_5p } 0 1 {'0'74R:A -> '0'73R:C: adjacent_3p } 0 2 {'0'73R:C -> '0'104R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'104R:G -> '0'73R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'74R:A -> '0'75R:U: adjacent_5p upward } 0 5 {'0'75R:U -> '0'74R:A: adjacent_3p downward } 0 6 {'0'74R:A -> '0'103R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'103R:U -> '0'74R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'74R:A -> '0'104R:G: outward } 0 9 {'0'104R:G -> '0'74R:A: outward } 0 10 {'0'75R:U -> '0'76R:G: adjacent_5p upward } 0 11 {'0'76R:G -> '0'75R:U: adjacent_3p downward } 0 12 {'0'75R:U -> '0'102R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'102R:A -> '0'75R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'76R:G -> '0'101R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'101R:C -> '0'76R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'76R:G -> '0'102R:A: outward } 0 17 {'0'102R:A -> '0'76R:G: outward } 0 18 {'0'101R:C -> '0'102R:A: adjacent_5p } 0 19 {'0'102R:A -> '0'101R:C: adjacent_3p } 0 20 {'0'102R:A -> '0'103R:U: adjacent_5p upward } 0 21 {'0'103R:U -> '0'102R:A: adjacent_3p downward } 0 22 {'0'103R:U -> '0'104R:G: adjacent_5p upward } 0 23 {'0'104R:G -> '0'103R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'74R:A 0 1 '0'75R:U 0 2 '0'76R:G 0 3 '0'77R:G 0 4 '0'100R:C 0 5 '0'101R:C 0 6 '0'102R:A 0 7 '0'103R:U 0 [Edges] 0 {'0'74R:A -> '0'75R:U: adjacent_5p upward } 0 1 {'0'75R:U -> '0'74R:A: adjacent_3p downward } 0 2 {'0'74R:A -> '0'103R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'103R:U -> '0'74R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'75R:U -> '0'76R:G: adjacent_5p upward } 0 5 {'0'76R:G -> '0'75R:U: adjacent_3p downward } 0 6 {'0'75R:U -> '0'102R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'102R:A -> '0'75R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'76R:G -> '0'77R:G: adjacent_5p upward } 0 9 {'0'77R:G -> '0'76R:G: adjacent_3p downward } 0 10 {'0'76R:G -> '0'101R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'101R:C -> '0'76R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'76R:G -> '0'102R:A: outward } 0 13 {'0'102R:A -> '0'76R:G: outward } 0 14 {'0'77R:G -> '0'100R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'100R:C -> '0'77R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'100R:C -> '0'101R:C: adjacent_5p } 0 17 {'0'101R:C -> '0'100R:C: adjacent_3p } 0 18 {'0'101R:C -> '0'102R:A: adjacent_5p } 0 19 {'0'102R:A -> '0'101R:C: adjacent_3p } 0 20 {'0'102R:A -> '0'103R:U: adjacent_5p upward } 0 21 {'0'103R:U -> '0'102R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'75R:U 0 1 '0'76R:G 0 2 '0'77R:G 0 3 '0'78R:G 0 4 '0'99R:A 0 5 '0'100R:C 0 6 '0'101R:C 0 7 '0'102R:A 0 [Edges] 0 {'0'75R:U -> '0'76R:G: adjacent_5p upward } 0 1 {'0'76R:G -> '0'75R:U: adjacent_3p downward } 0 2 {'0'75R:U -> '0'102R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'102R:A -> '0'75R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'76R:G -> '0'77R:G: adjacent_5p upward } 0 5 {'0'77R:G -> '0'76R:G: adjacent_3p downward } 0 6 {'0'76R:G -> '0'101R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'101R:C -> '0'76R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'76R:G -> '0'102R:A: outward } 0 9 {'0'102R:A -> '0'76R:G: outward } 0 10 {'0'77R:G -> '0'78R:G: adjacent_5p upward } 0 11 {'0'78R:G -> '0'77R:G: adjacent_3p downward } 0 12 {'0'77R:G -> '0'100R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'100R:C -> '0'77R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'78R:G -> '0'99R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {'0'99R:A -> '0'78R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {'0'99R:A -> '0'100R:C: adjacent_5p upward } 0 17 {'0'100R:C -> '0'99R:A: adjacent_3p downward } 0 18 {'0'100R:C -> '0'101R:C: adjacent_5p } 0 19 {'0'101R:C -> '0'100R:C: adjacent_3p } 0 20 {'0'101R:C -> '0'102R:A: adjacent_5p } 0 21 {'0'102R:A -> '0'101R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'76R:G 0 1 '0'77R:G 0 2 '0'78R:G 0 3 '0'79R:G 0 4 '0'98R:A 0 5 '0'99R:A 0 6 '0'100R:C 0 7 '0'101R:C 0 [Edges] 0 {'0'76R:G -> '0'77R:G: adjacent_5p upward } 0 1 {'0'77R:G -> '0'76R:G: adjacent_3p downward } 0 2 {'0'76R:G -> '0'101R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'101R:C -> '0'76R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'77R:G -> '0'78R:G: adjacent_5p upward } 0 5 {'0'78R:G -> '0'77R:G: adjacent_3p downward } 0 6 {'0'77R:G -> '0'100R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'100R:C -> '0'77R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'78R:G -> '0'79R:G: adjacent_5p upward } 0 9 {'0'79R:G -> '0'78R:G: adjacent_3p downward } 0 10 {'0'78R:G -> '0'99R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {'0'99R:A -> '0'78R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {'0'79R:G -> '0'98R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 13 {'0'98R:A -> '0'79R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 14 {'0'98R:A -> '0'99R:A: adjacent_5p upward } 0 15 {'0'99R:A -> '0'98R:A: adjacent_3p downward } 0 16 {'0'99R:A -> '0'100R:C: adjacent_5p upward } 0 17 {'0'100R:C -> '0'99R:A: adjacent_3p downward } 0 18 {'0'100R:C -> '0'101R:C: adjacent_5p } 0 19 {'0'101R:C -> '0'100R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'77R:G 0 1 '0'78R:G 0 2 '0'79R:G 0 3 '0'80R:A 0 4 '0'97R:G 0 5 '0'98R:A 0 6 '0'99R:A 0 7 '0'100R:C 0 [Edges] 0 {'0'77R:G -> '0'78R:G: adjacent_5p upward } 0 1 {'0'78R:G -> '0'77R:G: adjacent_3p downward } 0 2 {'0'77R:G -> '0'100R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'100R:C -> '0'77R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'78R:G -> '0'79R:G: adjacent_5p upward } 0 5 {'0'79R:G -> '0'78R:G: adjacent_3p downward } 0 6 {'0'78R:G -> '0'99R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {'0'99R:A -> '0'78R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {'0'79R:G -> '0'80R:A: adjacent_5p } 0 9 {'0'80R:A -> '0'79R:G: adjacent_3p } 0 10 {'0'79R:G -> '0'98R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 11 {'0'98R:A -> '0'79R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 12 {'0'80R:A -> '0'97R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {'0'97R:G -> '0'80R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {'0'80R:A -> '0'98R:A: outward } 0 15 {'0'98R:A -> '0'80R:A: outward } 0 16 {'0'97R:G -> '0'98R:A: adjacent_5p } 0 17 {'0'98R:A -> '0'97R:G: adjacent_3p } 0 18 {'0'98R:A -> '0'99R:A: adjacent_5p upward } 0 19 {'0'99R:A -> '0'98R:A: adjacent_3p downward } 0 20 {'0'99R:A -> '0'100R:C: adjacent_5p upward } 0 21 {'0'100R:C -> '0'99R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'80R:A 0 1 '0'81R:G 0 2 '0'82R:C 0 3 '0'83R:C 0 4 '0'91R:G 0 5 '0'92R:G 0 6 '0'93R:C 0 7 '0'94R:G 0 [Edges] 0 {'0'80R:A -> '0'81R:G: adjacent_5p } 0 1 {'0'81R:G -> '0'80R:A: adjacent_3p } 0 2 {'0'80R:A -> '0'94R:G: pairing parallel trans one_hbond Bs/Ss } 0 3 {'0'94R:G -> '0'80R:A: pairing parallel trans one_hbond Ss/Bs } 0 4 {'0'81R:G -> '0'82R:C: adjacent_5p upward } 0 5 {'0'82R:C -> '0'81R:G: adjacent_3p downward } 0 6 {'0'81R:G -> '0'93R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'93R:C -> '0'81R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'81R:G -> '0'94R:G: outward } 0 9 {'0'94R:G -> '0'81R:G: outward } 0 10 {'0'82R:C -> '0'83R:C: adjacent_5p } 0 11 {'0'83R:C -> '0'82R:C: adjacent_3p } 0 12 {'0'82R:C -> '0'92R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'92R:G -> '0'82R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'83R:C -> '0'91R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'91R:G -> '0'83R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'91R:G -> '0'92R:G: adjacent_5p upward } 0 17 {'0'92R:G -> '0'91R:G: adjacent_3p downward } 0 18 {'0'92R:G -> '0'93R:C: adjacent_5p upward } 0 19 {'0'93R:C -> '0'92R:G: adjacent_3p downward } 0 20 {'0'93R:C -> '0'94R:G: adjacent_5p upward } 0 21 {'0'94R:G -> '0'93R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'131R:A 0 1 '0'132R:A 0 2 '0'133R:U 0 3 '0'134R:U 0 4 '0'144R:A 0 5 '0'145R:A 0 6 '0'146R:U 0 7 '0'147R:G 0 [Edges] 0 {'0'131R:A -> '0'132R:A: adjacent_5p upward } 0 1 {'0'132R:A -> '0'131R:A: adjacent_3p downward } 0 2 {'0'131R:A -> '0'147R:G: pairing parallel cis one_hbond 61 Wh/Hh } 0 3 {'0'147R:G -> '0'131R:A: pairing parallel cis one_hbond 61 Hh/Wh } 0 4 {'0'132R:A -> '0'133R:U: adjacent_5p upward } 0 5 {'0'133R:U -> '0'132R:A: adjacent_3p downward } 0 6 {'0'132R:A -> '0'146R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'146R:U -> '0'132R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'133R:U -> '0'134R:U: adjacent_5p upward } 0 9 {'0'134R:U -> '0'133R:U: adjacent_3p downward } 0 10 {'0'133R:U -> '0'145R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'145R:A -> '0'133R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'134R:U -> '0'144R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'144R:A -> '0'134R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'144R:A -> '0'145R:A: adjacent_5p upward } 0 15 {'0'145R:A -> '0'144R:A: adjacent_3p downward } 0 16 {'0'145R:A -> '0'146R:U: adjacent_5p upward } 0 17 {'0'146R:U -> '0'145R:A: adjacent_3p downward } 0 18 {'0'146R:U -> '0'147R:G: adjacent_5p inward } 0 19 {'0'147R:G -> '0'146R:U: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'132R:A 0 1 '0'133R:U 0 2 '0'134R:U 0 3 '0'135R:G 0 4 '0'143R:C 0 5 '0'144R:A 0 6 '0'145R:A 0 7 '0'146R:U 0 [Edges] 0 {'0'132R:A -> '0'133R:U: adjacent_5p upward } 0 1 {'0'133R:U -> '0'132R:A: adjacent_3p downward } 0 2 {'0'132R:A -> '0'146R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'146R:U -> '0'132R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'133R:U -> '0'134R:U: adjacent_5p upward } 0 5 {'0'134R:U -> '0'133R:U: adjacent_3p downward } 0 6 {'0'133R:U -> '0'145R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'145R:A -> '0'133R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'134R:U -> '0'135R:G: adjacent_5p } 0 9 {'0'135R:G -> '0'134R:U: adjacent_3p } 0 10 {'0'134R:U -> '0'144R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'144R:A -> '0'134R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'135R:G -> '0'143R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'143R:C -> '0'135R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'135R:G -> '0'144R:A: outward } 0 15 {'0'144R:A -> '0'135R:G: outward } 0 16 {'0'143R:C -> '0'144R:A: adjacent_5p upward } 0 17 {'0'144R:A -> '0'143R:C: adjacent_3p downward } 0 18 {'0'144R:A -> '0'145R:A: adjacent_5p upward } 0 19 {'0'145R:A -> '0'144R:A: adjacent_3p downward } 0 20 {'0'145R:A -> '0'146R:U: adjacent_5p upward } 0 21 {'0'146R:U -> '0'145R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'133R:U 0 1 '0'134R:U 0 2 '0'135R:G 0 3 '0'136R:C 0 4 '0'142R:G 0 5 '0'143R:C 0 6 '0'144R:A 0 7 '0'145R:A 0 [Edges] 0 {'0'133R:U -> '0'134R:U: adjacent_5p upward } 0 1 {'0'134R:U -> '0'133R:U: adjacent_3p downward } 0 2 {'0'133R:U -> '0'145R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'145R:A -> '0'133R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'134R:U -> '0'135R:G: adjacent_5p } 0 5 {'0'135R:G -> '0'134R:U: adjacent_3p } 0 6 {'0'134R:U -> '0'144R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'144R:A -> '0'134R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'135R:G -> '0'136R:C: adjacent_5p upward } 0 9 {'0'136R:C -> '0'135R:G: adjacent_3p downward } 0 10 {'0'135R:G -> '0'143R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'143R:C -> '0'135R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'135R:G -> '0'144R:A: outward } 0 13 {'0'144R:A -> '0'135R:G: outward } 0 14 {'0'136R:C -> '0'142R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'142R:G -> '0'136R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'142R:G -> '0'143R:C: adjacent_5p upward } 0 17 {'0'143R:C -> '0'142R:G: adjacent_3p downward } 0 18 {'0'143R:C -> '0'144R:A: adjacent_5p upward } 0 19 {'0'144R:A -> '0'143R:C: adjacent_3p downward } 0 20 {'0'144R:A -> '0'145R:A: adjacent_5p upward } 0 21 {'0'145R:A -> '0'144R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'154R:C 0 1 '0'155R:C 0 2 '0'156R:C 0 3 '0'157R:G 0 4 '0'179R:C 0 5 '0'180R:G 0 6 '0'181R:G 0 7 '0'182R:G 0 [Edges] 0 {'0'154R:C -> '0'155R:C: adjacent_5p } 0 1 {'0'155R:C -> '0'154R:C: adjacent_3p } 0 2 {'0'154R:C -> '0'182R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'182R:G -> '0'154R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'155R:C -> '0'156R:C: adjacent_5p } 0 5 {'0'156R:C -> '0'155R:C: adjacent_3p } 0 6 {'0'155R:C -> '0'181R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'181R:G -> '0'155R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'156R:C -> '0'157R:G: adjacent_5p } 0 9 {'0'157R:G -> '0'156R:C: adjacent_3p } 0 10 {'0'156R:C -> '0'180R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'180R:G -> '0'156R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'157R:G -> '0'179R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'179R:C -> '0'157R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'157R:G -> '0'180R:G: outward } 0 15 {'0'180R:G -> '0'157R:G: outward } 0 16 {'0'179R:C -> '0'180R:G: adjacent_5p } 0 17 {'0'180R:G -> '0'179R:C: adjacent_3p } 0 18 {'0'180R:G -> '0'181R:G: adjacent_5p upward } 0 19 {'0'181R:G -> '0'180R:G: adjacent_3p downward } 0 20 {'0'181R:G -> '0'182R:G: adjacent_5p upward } 0 21 {'0'182R:G -> '0'181R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'155R:C 0 1 '0'156R:C 0 2 '0'157R:G 0 3 '0'158R:A 0 4 '0'178R:U 0 5 '0'179R:C 0 6 '0'180R:G 0 7 '0'181R:G 0 [Edges] 0 {'0'155R:C -> '0'156R:C: adjacent_5p } 0 1 {'0'156R:C -> '0'155R:C: adjacent_3p } 0 2 {'0'155R:C -> '0'181R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'181R:G -> '0'155R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'156R:C -> '0'157R:G: adjacent_5p } 0 5 {'0'157R:G -> '0'156R:C: adjacent_3p } 0 6 {'0'156R:C -> '0'180R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'180R:G -> '0'156R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'157R:G -> '0'158R:A: adjacent_5p upward } 0 9 {'0'158R:A -> '0'157R:G: adjacent_3p downward } 0 10 {'0'157R:G -> '0'179R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'179R:C -> '0'157R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'157R:G -> '0'180R:G: outward } 0 13 {'0'180R:G -> '0'157R:G: outward } 0 14 {'0'158R:A -> '0'178R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'178R:U -> '0'158R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'158R:A -> '0'179R:C: outward } 0 17 {'0'179R:C -> '0'158R:A: outward } 0 18 {'0'178R:U -> '0'179R:C: adjacent_5p upward } 0 19 {'0'179R:C -> '0'178R:U: adjacent_3p downward } 0 20 {'0'179R:C -> '0'180R:G: adjacent_5p } 0 21 {'0'180R:G -> '0'179R:C: adjacent_3p } 0 22 {'0'180R:G -> '0'181R:G: adjacent_5p upward } 0 23 {'0'181R:G -> '0'180R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 '0'156R:C 0 1 '0'157R:G 0 2 '0'158R:A 0 3 '0'159R:G 0 4 '0'177R:A 0 5 '0'178R:U 0 6 '0'179R:C 0 7 '0'180R:G 0 [Edges] 0 {'0'156R:C -> '0'157R:G: adjacent_5p } 0 1 {'0'157R:G -> '0'156R:C: adjacent_3p } 0 2 {'0'156R:C -> '0'180R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'180R:G -> '0'156R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'157R:G -> '0'158R:A: adjacent_5p upward } 0 5 {'0'158R:A -> '0'157R:G: adjacent_3p downward } 0 6 {'0'157R:G -> '0'179R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'179R:C -> '0'157R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'157R:G -> '0'180R:G: outward } 0 9 {'0'180R:G -> '0'157R:G: outward } 0 10 {'0'158R:A -> '0'159R:G: adjacent_5p upward } 0 11 {'0'159R:G -> '0'158R:A: adjacent_3p downward } 0 12 {'0'158R:A -> '0'178R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'178R:U -> '0'158R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'158R:A -> '0'179R:C: outward } 0 15 {'0'179R:C -> '0'158R:A: outward } 0 16 {'0'159R:G -> '0'177R:A: pairing antiparallel trans one_hbond Ss/Hw } 0 17 {'0'177R:A -> '0'159R:G: pairing antiparallel trans one_hbond Hw/Ss } 0 18 {'0'177R:A -> '0'178R:U: adjacent_5p upward } 0 19 {'0'178R:U -> '0'177R:A: adjacent_3p downward } 0 20 {'0'178R:U -> '0'179R:C: adjacent_5p upward } 0 21 {'0'179R:C -> '0'178R:U: adjacent_3p downward } 0 22 {'0'179R:C -> '0'180R:G: adjacent_5p } 0 23 {'0'180R:G -> '0'179R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'157R:G 0 1 '0'158R:A 0 2 '0'159R:G 0 3 '0'160R:A 0 4 '0'176R:U 0 5 '0'177R:A 0 6 '0'178R:U 0 7 '0'179R:C 0 [Edges] 0 {'0'157R:G -> '0'158R:A: adjacent_5p upward } 0 1 {'0'158R:A -> '0'157R:G: adjacent_3p downward } 0 2 {'0'157R:G -> '0'179R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'179R:C -> '0'157R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'158R:A -> '0'159R:G: adjacent_5p upward } 0 5 {'0'159R:G -> '0'158R:A: adjacent_3p downward } 0 6 {'0'158R:A -> '0'178R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'178R:U -> '0'158R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'158R:A -> '0'179R:C: outward } 0 9 {'0'179R:C -> '0'158R:A: outward } 0 10 {'0'159R:G -> '0'160R:A: adjacent_5p } 0 11 {'0'160R:A -> '0'159R:G: adjacent_3p } 0 12 {'0'159R:G -> '0'177R:A: pairing antiparallel trans one_hbond Ss/Hw } 0 13 {'0'177R:A -> '0'159R:G: pairing antiparallel trans one_hbond Hw/Ss } 0 14 {'0'160R:A -> '0'176R:U: pairing antiparallel trans XXIV Hh/Ww } 0 15 {'0'176R:U -> '0'160R:A: pairing antiparallel trans XXIV Ww/Hh } 0 16 {'0'160R:A -> '0'177R:A: outward } 0 17 {'0'177R:A -> '0'160R:A: outward } 0 18 {'0'176R:U -> '0'177R:A: adjacent_5p } 0 19 {'0'177R:A -> '0'176R:U: adjacent_3p } 0 20 {'0'177R:A -> '0'178R:U: adjacent_5p upward } 0 21 {'0'178R:U -> '0'177R:A: adjacent_3p downward } 0 22 {'0'178R:U -> '0'179R:C: adjacent_5p upward } 0 23 {'0'179R:C -> '0'178R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'161R:A 0 1 '0'162R:C 0 2 '0'163R:U 0 3 '0'164R:G 0 4 '0'171R:C 0 5 '0'172R:U 0 6 '0'173R:C 0 7 '0'174R:A 0 [Edges] 0 {'0'161R:A -> '0'162R:C: adjacent_5p upward } 0 1 {'0'162R:C -> '0'161R:A: adjacent_3p downward } 0 2 {'0'161R:A -> '0'174R:A: pairing parallel trans II Hh/Hh } 0 3 {'0'174R:A -> '0'161R:A: pairing parallel trans II Hh/Hh } 0 4 {'0'162R:C -> '0'163R:U: adjacent_5p } 0 5 {'0'163R:U -> '0'162R:C: adjacent_3p } 0 6 {'0'162R:C -> '0'173R:C: pairing antiparallel trans 132 Hh/Bs } 0 7 {'0'173R:C -> '0'162R:C: pairing antiparallel trans 132 Bs/Hh } 0 8 {'0'163R:U -> '0'164R:G: adjacent_5p upward } 0 9 {'0'164R:G -> '0'163R:U: adjacent_3p downward } 0 10 {'0'163R:U -> '0'172R:U: pairing antiparallel cis XVI Ww/Ws } 0 11 {'0'172R:U -> '0'163R:U: pairing antiparallel cis XVI Ws/Ww } 0 12 {'0'164R:G -> '0'171R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'171R:C -> '0'164R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'171R:C -> '0'172R:U: adjacent_5p upward } 0 15 {'0'172R:U -> '0'171R:C: adjacent_3p downward } 0 16 {'0'172R:U -> '0'173R:C: adjacent_5p upward } 0 17 {'0'173R:C -> '0'172R:U: adjacent_3p downward } 0 18 {'0'173R:C -> '0'174R:A: adjacent_5p inward } 0 19 {'0'174R:A -> '0'173R:C: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'162R:C 0 1 '0'163R:U 0 2 '0'164R:G 0 3 '0'165R:A 0 4 '0'170R:U 0 5 '0'171R:C 0 6 '0'172R:U 0 7 '0'173R:C 0 [Edges] 0 {'0'162R:C -> '0'163R:U: adjacent_5p } 0 1 {'0'163R:U -> '0'162R:C: adjacent_3p } 0 2 {'0'162R:C -> '0'173R:C: pairing antiparallel trans 132 Hh/Bs } 0 3 {'0'173R:C -> '0'162R:C: pairing antiparallel trans 132 Bs/Hh } 0 4 {'0'163R:U -> '0'164R:G: adjacent_5p upward } 0 5 {'0'164R:G -> '0'163R:U: adjacent_3p downward } 0 6 {'0'163R:U -> '0'172R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {'0'172R:U -> '0'163R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {'0'164R:G -> '0'165R:A: adjacent_5p upward } 0 9 {'0'165R:A -> '0'164R:G: adjacent_3p downward } 0 10 {'0'164R:G -> '0'171R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'171R:C -> '0'164R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'165R:A -> '0'170R:U: pairing antiparallel trans one_hbond Bs/Hw } 0 13 {'0'170R:U -> '0'165R:A: pairing antiparallel trans one_hbond Hw/Bs } 0 14 {'0'170R:U -> '0'171R:C: adjacent_5p upward } 0 15 {'0'171R:C -> '0'170R:U: adjacent_3p downward } 0 16 {'0'171R:C -> '0'172R:U: adjacent_5p upward } 0 17 {'0'172R:U -> '0'171R:C: adjacent_3p downward } 0 18 {'0'172R:U -> '0'173R:C: adjacent_5p upward } 0 19 {'0'173R:C -> '0'172R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'206R:G 0 1 '0'207R:U 0 2 '0'208R:C 0 3 '0'209R:G 0 4 '0'230R:C 0 5 '0'231R:G 0 6 '0'232R:A 0 7 '0'233R:U 0 [Edges] 0 {'0'206R:G -> '0'207R:U: adjacent_5p upward } 0 1 {'0'207R:U -> '0'206R:G: adjacent_3p downward } 0 2 {'0'206R:G -> '0'233R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'233R:U -> '0'206R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'207R:U -> '0'208R:C: adjacent_5p upward } 0 5 {'0'208R:C -> '0'207R:U: adjacent_3p downward } 0 6 {'0'207R:U -> '0'232R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'232R:A -> '0'207R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'208R:C -> '0'209R:G: adjacent_5p upward } 0 9 {'0'209R:G -> '0'208R:C: adjacent_3p downward } 0 10 {'0'208R:C -> '0'231R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'231R:G -> '0'208R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'209R:G -> '0'230R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'230R:C -> '0'209R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'209R:G -> '0'231R:G: outward } 0 15 {'0'231R:G -> '0'209R:G: outward } 0 16 {'0'230R:C -> '0'231R:G: adjacent_5p upward } 0 17 {'0'231R:G -> '0'230R:C: adjacent_3p downward } 0 18 {'0'231R:G -> '0'232R:A: adjacent_5p upward } 0 19 {'0'232R:A -> '0'231R:G: adjacent_3p downward } 0 20 {'0'232R:A -> '0'233R:U: adjacent_5p upward } 0 21 {'0'233R:U -> '0'232R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'207R:U 0 1 '0'208R:C 0 2 '0'209R:G 0 3 '0'210R:U 0 4 '0'229R:G 0 5 '0'230R:C 0 6 '0'231R:G 0 7 '0'232R:A 0 [Edges] 0 {'0'207R:U -> '0'208R:C: adjacent_5p upward } 0 1 {'0'208R:C -> '0'207R:U: adjacent_3p downward } 0 2 {'0'207R:U -> '0'232R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'232R:A -> '0'207R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'208R:C -> '0'209R:G: adjacent_5p upward } 0 5 {'0'209R:G -> '0'208R:C: adjacent_3p downward } 0 6 {'0'208R:C -> '0'231R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'231R:G -> '0'208R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'209R:G -> '0'210R:U: adjacent_5p upward } 0 9 {'0'210R:U -> '0'209R:G: adjacent_3p downward } 0 10 {'0'209R:G -> '0'230R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'230R:C -> '0'209R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'209R:G -> '0'231R:G: outward } 0 13 {'0'231R:G -> '0'209R:G: outward } 0 14 {'0'210R:U -> '0'229R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {'0'229R:G -> '0'210R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {'0'229R:G -> '0'230R:C: adjacent_5p upward } 0 17 {'0'230R:C -> '0'229R:G: adjacent_3p downward } 0 18 {'0'230R:C -> '0'231R:G: adjacent_5p upward } 0 19 {'0'231R:G -> '0'230R:C: adjacent_3p downward } 0 20 {'0'231R:G -> '0'232R:A: adjacent_5p upward } 0 21 {'0'232R:A -> '0'231R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'208R:C 0 1 '0'209R:G 0 2 '0'210R:U 0 3 '0'211R:U 0 4 '0'228R:C 0 5 '0'229R:G 0 6 '0'230R:C 0 7 '0'231R:G 0 [Edges] 0 {'0'208R:C -> '0'209R:G: adjacent_5p upward } 0 1 {'0'209R:G -> '0'208R:C: adjacent_3p downward } 0 2 {'0'208R:C -> '0'231R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'231R:G -> '0'208R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'209R:G -> '0'210R:U: adjacent_5p upward } 0 5 {'0'210R:U -> '0'209R:G: adjacent_3p downward } 0 6 {'0'209R:G -> '0'230R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'230R:C -> '0'209R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'209R:G -> '0'231R:G: outward } 0 9 {'0'231R:G -> '0'209R:G: outward } 0 10 {'0'210R:U -> '0'211R:U: adjacent_5p upward } 0 11 {'0'211R:U -> '0'210R:U: adjacent_3p downward } 0 12 {'0'210R:U -> '0'229R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {'0'229R:G -> '0'210R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {'0'211R:U -> '0'228R:C: pairing antiparallel trans one_hbond 97 Ss/Hw } 0 15 {'0'228R:C -> '0'211R:U: pairing antiparallel trans one_hbond 97 Hw/Ss } 0 16 {'0'228R:C -> '0'229R:G: adjacent_5p upward } 0 17 {'0'229R:G -> '0'228R:C: adjacent_3p downward } 0 18 {'0'229R:G -> '0'230R:C: adjacent_5p upward } 0 19 {'0'230R:C -> '0'229R:G: adjacent_3p downward } 0 20 {'0'230R:C -> '0'231R:G: adjacent_5p upward } 0 21 {'0'231R:G -> '0'230R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'209R:G 0 1 '0'210R:U 0 2 '0'211R:U 0 3 '0'212R:A 0 4 '0'227R:A 0 5 '0'228R:C 0 6 '0'229R:G 0 7 '0'230R:C 0 [Edges] 0 {'0'209R:G -> '0'210R:U: adjacent_5p upward } 0 1 {'0'210R:U -> '0'209R:G: adjacent_3p downward } 0 2 {'0'209R:G -> '0'230R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'230R:C -> '0'209R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'210R:U -> '0'211R:U: adjacent_5p upward } 0 5 {'0'211R:U -> '0'210R:U: adjacent_3p downward } 0 6 {'0'210R:U -> '0'229R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'229R:G -> '0'210R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'211R:U -> '0'212R:A: adjacent_5p inward } 0 9 {'0'212R:A -> '0'211R:U: adjacent_3p inward } 0 10 {'0'211R:U -> '0'228R:C: pairing antiparallel trans one_hbond 97 Ss/Hw } 0 11 {'0'228R:C -> '0'211R:U: pairing antiparallel trans one_hbond 97 Hw/Ss } 0 12 {'0'212R:A -> '0'227R:A: pairing parallel trans II Hh/Hh } 0 13 {'0'227R:A -> '0'212R:A: pairing parallel trans II Hh/Hh } 0 14 {'0'227R:A -> '0'228R:C: adjacent_5p upward } 0 15 {'0'228R:C -> '0'227R:A: adjacent_3p downward } 0 16 {'0'228R:C -> '0'229R:G: adjacent_5p upward } 0 17 {'0'229R:G -> '0'228R:C: adjacent_3p downward } 0 18 {'0'229R:G -> '0'230R:C: adjacent_5p upward } 0 19 {'0'230R:C -> '0'229R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'214R:U 0 1 '0'215R:A 0 2 '0'216R:A 0 3 '0'217R:C 0 4 '0'223R:G 0 5 '0'224R:U 0 6 '0'225R:G 0 7 '0'226R:A 0 [Edges] 0 {'0'214R:U -> '0'215R:A: adjacent_5p upward } 0 1 {'0'215R:A -> '0'214R:U: adjacent_3p downward } 0 2 {'0'214R:U -> '0'226R:A: pairing antiparallel trans XXIV Ww/Hh } 0 3 {'0'226R:A -> '0'214R:U: pairing antiparallel trans XXIV Hh/Ww } 0 4 {'0'215R:A -> '0'216R:A: adjacent_5p upward } 0 5 {'0'216R:A -> '0'215R:A: adjacent_3p downward } 0 6 {'0'215R:A -> '0'225R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {'0'225R:G -> '0'215R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {'0'215R:A -> '0'226R:A: outward } 0 9 {'0'226R:A -> '0'215R:A: outward } 0 10 {'0'216R:A -> '0'217R:C: adjacent_5p upward } 0 11 {'0'217R:C -> '0'216R:A: adjacent_3p downward } 0 12 {'0'216R:A -> '0'224R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'224R:U -> '0'216R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'217R:C -> '0'223R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'223R:G -> '0'217R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'223R:G -> '0'224R:U: adjacent_5p upward } 0 17 {'0'224R:U -> '0'223R:G: adjacent_3p downward } 0 18 {'0'224R:U -> '0'225R:G: adjacent_5p upward } 0 19 {'0'225R:G -> '0'224R:U: adjacent_3p downward } 0 20 {'0'225R:G -> '0'226R:A: adjacent_5p } 0 21 {'0'226R:A -> '0'225R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'215R:A 0 1 '0'216R:A 0 2 '0'217R:C 0 3 '0'218R:C 0 4 '0'222R:A 0 5 '0'223R:G 0 6 '0'224R:U 0 7 '0'225R:G 0 [Edges] 0 {'0'215R:A -> '0'216R:A: adjacent_5p upward } 0 1 {'0'216R:A -> '0'215R:A: adjacent_3p downward } 0 2 {'0'215R:A -> '0'225R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'225R:G -> '0'215R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'216R:A -> '0'217R:C: adjacent_5p upward } 0 5 {'0'217R:C -> '0'216R:A: adjacent_3p downward } 0 6 {'0'216R:A -> '0'224R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'224R:U -> '0'216R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'217R:C -> '0'218R:C: adjacent_5p upward } 0 9 {'0'218R:C -> '0'217R:C: adjacent_3p downward } 0 10 {'0'217R:C -> '0'223R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'223R:G -> '0'217R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'218R:C -> '0'222R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 13 {'0'222R:A -> '0'218R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 14 {'0'222R:A -> '0'223R:G: adjacent_5p upward } 0 15 {'0'223R:G -> '0'222R:A: adjacent_3p downward } 0 16 {'0'223R:G -> '0'224R:U: adjacent_5p upward } 0 17 {'0'224R:U -> '0'223R:G: adjacent_3p downward } 0 18 {'0'224R:U -> '0'225R:G: adjacent_5p upward } 0 19 {'0'225R:G -> '0'224R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'241R:A 0 1 '0'242R:A 0 2 '0'243R:A 0 3 '0'244R:C 0 4 '0'267R:G 0 5 '0'268R:U 0 6 '0'269R:G 0 7 '0'270R:U 0 [Edges] 0 {'0'241R:A -> '0'242R:A: adjacent_5p upward } 0 1 {'0'242R:A -> '0'241R:A: adjacent_3p downward } 0 2 {'0'241R:A -> '0'270R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {'0'270R:U -> '0'241R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {'0'242R:A -> '0'243R:A: adjacent_5p upward } 0 5 {'0'243R:A -> '0'242R:A: adjacent_3p downward } 0 6 {'0'242R:A -> '0'269R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {'0'269R:G -> '0'242R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {'0'243R:A -> '0'244R:C: adjacent_5p } 0 9 {'0'244R:C -> '0'243R:A: adjacent_3p } 0 10 {'0'244R:C -> '0'267R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'267R:G -> '0'244R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'267R:G -> '0'268R:U: adjacent_5p upward } 0 13 {'0'268R:U -> '0'267R:G: adjacent_3p downward } 0 14 {'0'268R:U -> '0'269R:G: adjacent_5p upward } 0 15 {'0'269R:G -> '0'268R:U: adjacent_3p downward } 0 16 {'0'269R:G -> '0'270R:U: adjacent_5p upward } 0 17 {'0'270R:U -> '0'269R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '0'242R:A 0 1 '0'243R:A 0 2 '0'244R:C 0 3 '0'245R:C 0 4 '0'266R:G 0 5 '0'267R:G 0 6 '0'268R:U 0 7 '0'269R:G 0 [Edges] 0 {'0'242R:A -> '0'243R:A: adjacent_5p upward } 0 1 {'0'243R:A -> '0'242R:A: adjacent_3p downward } 0 2 {'0'242R:A -> '0'269R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'269R:G -> '0'242R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'243R:A -> '0'244R:C: adjacent_5p } 0 5 {'0'244R:C -> '0'243R:A: adjacent_3p } 0 6 {'0'244R:C -> '0'245R:C: adjacent_5p upward } 0 7 {'0'245R:C -> '0'244R:C: adjacent_3p downward } 0 8 {'0'244R:C -> '0'267R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'267R:G -> '0'244R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'245R:C -> '0'266R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'266R:G -> '0'245R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'266R:G -> '0'267R:G: adjacent_5p upward } 0 13 {'0'267R:G -> '0'266R:G: adjacent_3p downward } 0 14 {'0'267R:G -> '0'268R:U: adjacent_5p upward } 0 15 {'0'268R:U -> '0'267R:G: adjacent_3p downward } 0 16 {'0'268R:U -> '0'269R:G: adjacent_5p upward } 0 17 {'0'269R:G -> '0'268R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '0'244R:C 0 1 '0'245R:C 0 2 '0'246R:G 0 3 '0'247R:A 0 4 '0'264R:G 0 5 '0'265R:U 0 6 '0'266R:G 0 7 '0'267R:G 0 [Edges] 0 {'0'244R:C -> '0'245R:C: adjacent_5p upward } 0 1 {'0'245R:C -> '0'244R:C: adjacent_3p downward } 0 2 {'0'244R:C -> '0'267R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'267R:G -> '0'244R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'245R:C -> '0'246R:G: adjacent_5p upward } 0 5 {'0'246R:G -> '0'245R:C: adjacent_3p downward } 0 6 {'0'245R:C -> '0'266R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'266R:G -> '0'245R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'246R:G -> '0'247R:A: adjacent_5p } 0 9 {'0'247R:A -> '0'246R:G: adjacent_3p } 0 10 {'0'246R:G -> '0'264R:G: inward } 0 11 {'0'264R:G -> '0'246R:G: inward } 0 12 {'0'246R:G -> '0'265R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 13 {'0'265R:U -> '0'246R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 14 {'0'247R:A -> '0'264R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {'0'264R:G -> '0'247R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {'0'247R:A -> '0'265R:U: outward } 0 17 {'0'265R:U -> '0'247R:A: outward } 0 18 {'0'264R:G -> '0'265R:U: adjacent_5p } 0 19 {'0'265R:U -> '0'264R:G: adjacent_3p } 0 20 {'0'265R:U -> '0'266R:G: adjacent_5p upward } 0 21 {'0'266R:G -> '0'265R:U: adjacent_3p downward } 0 22 {'0'266R:G -> '0'267R:G: adjacent_5p upward } 0 23 {'0'267R:G -> '0'266R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 12 . . 3 . . 9 . 14 16 . . 4 . . 11 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 '0'249R:G 0 1 '0'250R:C 0 2 '0'251R:C 0 3 '0'252R:C 0 4 '0'257R:G 0 5 '0'258R:G 0 6 '0'259R:G 0 7 '0'260R:C 0 [Edges] 0 {'0'249R:G -> '0'250R:C: adjacent_5p upward } 0 1 {'0'250R:C -> '0'249R:G: adjacent_3p downward } 0 2 {'0'249R:G -> '0'260R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'260R:C -> '0'249R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'250R:C -> '0'251R:C: adjacent_5p upward } 0 5 {'0'251R:C -> '0'250R:C: adjacent_3p downward } 0 6 {'0'250R:C -> '0'259R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'259R:G -> '0'250R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'251R:C -> '0'252R:C: adjacent_5p upward } 0 9 {'0'252R:C -> '0'251R:C: adjacent_3p downward } 0 10 {'0'251R:C -> '0'258R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'258R:G -> '0'251R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'252R:C -> '0'257R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'257R:G -> '0'252R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'257R:G -> '0'258R:G: adjacent_5p upward } 0 15 {'0'258R:G -> '0'257R:G: adjacent_3p downward } 0 16 {'0'258R:G -> '0'259R:G: adjacent_5p upward } 0 17 {'0'259R:G -> '0'258R:G: adjacent_3p downward } 0 18 {'0'259R:G -> '0'260R:C: adjacent_5p upward } 0 19 {'0'260R:C -> '0'259R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'250R:C 0 1 '0'251R:C 0 2 '0'252R:C 0 3 '0'253R:U 0 4 '0'256R:C 0 5 '0'257R:G 0 6 '0'258R:G 0 7 '0'259R:G 0 [Edges] 0 {'0'250R:C -> '0'251R:C: adjacent_5p upward } 0 1 {'0'251R:C -> '0'250R:C: adjacent_3p downward } 0 2 {'0'250R:C -> '0'259R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'259R:G -> '0'250R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'251R:C -> '0'252R:C: adjacent_5p upward } 0 5 {'0'252R:C -> '0'251R:C: adjacent_3p downward } 0 6 {'0'251R:C -> '0'258R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'258R:G -> '0'251R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'252R:C -> '0'253R:U: adjacent_5p upward } 0 9 {'0'253R:U -> '0'252R:C: adjacent_3p downward } 0 10 {'0'252R:C -> '0'257R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'257R:G -> '0'252R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'253R:U -> '0'256R:C: pairing antiparallel trans one_hbond 97 Ss/Hw } 0 13 {'0'256R:C -> '0'253R:U: pairing antiparallel trans one_hbond 97 Hw/Ss } 0 14 {'0'256R:C -> '0'257R:G: adjacent_5p upward } 0 15 {'0'257R:G -> '0'256R:C: adjacent_3p downward } 0 16 {'0'257R:G -> '0'258R:G: adjacent_5p upward } 0 17 {'0'258R:G -> '0'257R:G: adjacent_3p downward } 0 18 {'0'258R:G -> '0'259R:G: adjacent_5p upward } 0 19 {'0'259R:G -> '0'258R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'275R:G 0 1 '0'276R:C 0 2 '0'277R:U 0 3 '0'278R:A 0 4 '0'371R:U 0 5 '0'372R:A 0 6 '0'373R:G 0 7 '0'374R:U 0 [Edges] 0 {'0'275R:G -> '0'276R:C: adjacent_5p upward } 0 1 {'0'276R:C -> '0'275R:G: adjacent_3p downward } 0 2 {'0'275R:G -> '0'374R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'374R:U -> '0'275R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'276R:C -> '0'277R:U: adjacent_5p upward } 0 5 {'0'277R:U -> '0'276R:C: adjacent_3p downward } 0 6 {'0'276R:C -> '0'373R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'373R:G -> '0'276R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'277R:U -> '0'278R:A: adjacent_5p upward } 0 9 {'0'278R:A -> '0'277R:U: adjacent_3p downward } 0 10 {'0'277R:U -> '0'372R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'372R:A -> '0'277R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'278R:A -> '0'371R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'371R:U -> '0'278R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'278R:A -> '0'372R:A: outward } 0 15 {'0'372R:A -> '0'278R:A: outward } 0 16 {'0'371R:U -> '0'372R:A: adjacent_5p upward } 0 17 {'0'372R:A -> '0'371R:U: adjacent_3p downward } 0 18 {'0'372R:A -> '0'373R:G: adjacent_5p upward } 0 19 {'0'373R:G -> '0'372R:A: adjacent_3p downward } 0 20 {'0'373R:G -> '0'374R:U: adjacent_5p upward } 0 21 {'0'374R:U -> '0'373R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'276R:C 0 1 '0'277R:U 0 2 '0'278R:A 0 3 '0'279R:C 0 4 '0'370R:G 0 5 '0'371R:U 0 6 '0'372R:A 0 7 '0'373R:G 0 [Edges] 0 {'0'276R:C -> '0'277R:U: adjacent_5p upward } 0 1 {'0'277R:U -> '0'276R:C: adjacent_3p downward } 0 2 {'0'276R:C -> '0'373R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'373R:G -> '0'276R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'277R:U -> '0'278R:A: adjacent_5p upward } 0 5 {'0'278R:A -> '0'277R:U: adjacent_3p downward } 0 6 {'0'277R:U -> '0'372R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'372R:A -> '0'277R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'278R:A -> '0'279R:C: adjacent_5p upward } 0 9 {'0'279R:C -> '0'278R:A: adjacent_3p downward } 0 10 {'0'278R:A -> '0'371R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'371R:U -> '0'278R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'278R:A -> '0'372R:A: outward } 0 13 {'0'372R:A -> '0'278R:A: outward } 0 14 {'0'279R:C -> '0'370R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'370R:G -> '0'279R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'370R:G -> '0'371R:U: adjacent_5p upward } 0 17 {'0'371R:U -> '0'370R:G: adjacent_3p downward } 0 18 {'0'371R:U -> '0'372R:A: adjacent_5p upward } 0 19 {'0'372R:A -> '0'371R:U: adjacent_3p downward } 0 20 {'0'372R:A -> '0'373R:G: adjacent_5p upward } 0 21 {'0'373R:G -> '0'372R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'277R:U 0 1 '0'278R:A 0 2 '0'279R:C 0 3 '0'280R:C 0 4 '0'369R:G 0 5 '0'370R:G 0 6 '0'371R:U 0 7 '0'372R:A 0 [Edges] 0 {'0'277R:U -> '0'278R:A: adjacent_5p upward } 0 1 {'0'278R:A -> '0'277R:U: adjacent_3p downward } 0 2 {'0'277R:U -> '0'372R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'372R:A -> '0'277R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'278R:A -> '0'279R:C: adjacent_5p upward } 0 5 {'0'279R:C -> '0'278R:A: adjacent_3p downward } 0 6 {'0'278R:A -> '0'371R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'371R:U -> '0'278R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'278R:A -> '0'372R:A: outward } 0 9 {'0'372R:A -> '0'278R:A: outward } 0 10 {'0'279R:C -> '0'280R:C: adjacent_5p } 0 11 {'0'280R:C -> '0'279R:C: adjacent_3p } 0 12 {'0'279R:C -> '0'370R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'370R:G -> '0'279R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'280R:C -> '0'369R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'369R:G -> '0'280R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'280R:C -> '0'370R:G: outward } 0 17 {'0'370R:G -> '0'280R:C: outward } 0 18 {'0'369R:G -> '0'370R:G: adjacent_5p upward } 0 19 {'0'370R:G -> '0'369R:G: adjacent_3p downward } 0 20 {'0'370R:G -> '0'371R:U: adjacent_5p upward } 0 21 {'0'371R:U -> '0'370R:G: adjacent_3p downward } 0 22 {'0'371R:U -> '0'372R:A: adjacent_5p upward } 0 23 {'0'372R:A -> '0'371R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'286R:U 0 1 '0'287R:C 0 2 '0'288R:A 0 3 '0'289R:G 0 4 '0'363R:A 0 5 '0'364R:C 0 6 '0'365R:G 0 7 '0'366R:U 0 [Edges] 0 {'0'286R:U -> '0'287R:C: adjacent_5p upward } 0 1 {'0'287R:C -> '0'286R:U: adjacent_3p downward } 0 2 {'0'286R:U -> '0'366R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {'0'366R:U -> '0'286R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {'0'287R:C -> '0'288R:A: adjacent_5p upward } 0 5 {'0'288R:A -> '0'287R:C: adjacent_3p downward } 0 6 {'0'287R:C -> '0'365R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'365R:G -> '0'287R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'288R:A -> '0'289R:G: adjacent_5p upward } 0 9 {'0'289R:G -> '0'288R:A: adjacent_3p downward } 0 10 {'0'288R:A -> '0'365R:G: outward } 0 11 {'0'365R:G -> '0'288R:A: outward } 0 12 {'0'289R:G -> '0'363R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 13 {'0'363R:A -> '0'289R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 14 {'0'363R:A -> '0'364R:C: adjacent_5p upward } 0 15 {'0'364R:C -> '0'363R:A: adjacent_3p downward } 0 16 {'0'364R:C -> '0'365R:G: adjacent_5p upward } 0 17 {'0'365R:G -> '0'364R:C: adjacent_3p downward } 0 18 {'0'365R:G -> '0'366R:U: adjacent_5p upward } 0 19 {'0'366R:U -> '0'365R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . 10 . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 11 . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'287R:C 0 1 '0'288R:A 0 2 '0'289R:G 0 3 '0'290R:C 0 4 '0'362R:G 0 5 '0'363R:A 0 6 '0'364R:C 0 7 '0'365R:G 0 [Edges] 0 {'0'287R:C -> '0'288R:A: adjacent_5p upward } 0 1 {'0'288R:A -> '0'287R:C: adjacent_3p downward } 0 2 {'0'287R:C -> '0'365R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'365R:G -> '0'287R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'288R:A -> '0'289R:G: adjacent_5p upward } 0 5 {'0'289R:G -> '0'288R:A: adjacent_3p downward } 0 6 {'0'288R:A -> '0'365R:G: outward } 0 7 {'0'365R:G -> '0'288R:A: outward } 0 8 {'0'289R:G -> '0'290R:C: adjacent_5p upward } 0 9 {'0'290R:C -> '0'289R:G: adjacent_3p downward } 0 10 {'0'289R:G -> '0'363R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {'0'363R:A -> '0'289R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {'0'290R:C -> '0'362R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'362R:G -> '0'290R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'362R:G -> '0'363R:A: adjacent_5p upward } 0 15 {'0'363R:A -> '0'362R:G: adjacent_3p downward } 0 16 {'0'363R:A -> '0'364R:C: adjacent_5p upward } 0 17 {'0'364R:C -> '0'363R:A: adjacent_3p downward } 0 18 {'0'364R:C -> '0'365R:G: adjacent_5p upward } 0 19 {'0'365R:G -> '0'364R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . 6 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . . . . . 17 . 18 7 3 7 . . . . 19 . [GraphModel] [Vertices] 0 '0'289R:G 0 1 '0'290R:C 0 2 '0'291R:C 0 3 '0'292R:G 0 4 '0'360R:A 0 5 '0'361R:C 0 6 '0'362R:G 0 7 '0'363R:A 0 [Edges] 0 {'0'289R:G -> '0'290R:C: adjacent_5p upward } 0 1 {'0'290R:C -> '0'289R:G: adjacent_3p downward } 0 2 {'0'289R:G -> '0'363R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {'0'363R:A -> '0'289R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {'0'290R:C -> '0'291R:C: adjacent_5p upward } 0 5 {'0'291R:C -> '0'290R:C: adjacent_3p downward } 0 6 {'0'290R:C -> '0'362R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'362R:G -> '0'290R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'291R:C -> '0'292R:G: adjacent_5p upward } 0 9 {'0'292R:G -> '0'291R:C: adjacent_3p downward } 0 10 {'0'291R:C -> '0'361R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 11 {'0'361R:C -> '0'291R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 12 {'0'292R:G -> '0'360R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {'0'360R:A -> '0'292R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {'0'360R:A -> '0'361R:C: adjacent_5p upward } 0 15 {'0'361R:C -> '0'360R:A: adjacent_3p downward } 0 16 {'0'361R:C -> '0'362R:G: adjacent_5p upward } 0 17 {'0'362R:G -> '0'361R:C: adjacent_3p downward } 0 18 {'0'362R:G -> '0'363R:A: adjacent_5p upward } 0 19 {'0'363R:A -> '0'362R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'290R:C 0 1 '0'291R:C 0 2 '0'292R:G 0 3 '0'293R:A 0 4 '0'359R:U 0 5 '0'360R:A 0 6 '0'361R:C 0 7 '0'362R:G 0 [Edges] 0 {'0'290R:C -> '0'291R:C: adjacent_5p upward } 0 1 {'0'291R:C -> '0'290R:C: adjacent_3p downward } 0 2 {'0'290R:C -> '0'362R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'362R:G -> '0'290R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'291R:C -> '0'292R:G: adjacent_5p upward } 0 5 {'0'292R:G -> '0'291R:C: adjacent_3p downward } 0 6 {'0'291R:C -> '0'361R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 7 {'0'361R:C -> '0'291R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 8 {'0'292R:G -> '0'293R:A: adjacent_5p } 0 9 {'0'293R:A -> '0'292R:G: adjacent_3p } 0 10 {'0'292R:G -> '0'360R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {'0'360R:A -> '0'292R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {'0'293R:A -> '0'359R:U: pairing antiparallel trans XXIV Hh/Ww } 0 13 {'0'359R:U -> '0'293R:A: pairing antiparallel trans XXIV Ww/Hh } 0 14 {'0'293R:A -> '0'360R:A: outward } 0 15 {'0'360R:A -> '0'293R:A: outward } 0 16 {'0'359R:U -> '0'360R:A: adjacent_5p } 0 17 {'0'360R:A -> '0'359R:U: adjacent_3p } 0 18 {'0'360R:A -> '0'361R:C: adjacent_5p upward } 0 19 {'0'361R:C -> '0'360R:A: adjacent_3p downward } 0 20 {'0'361R:C -> '0'362R:G: adjacent_5p upward } 0 21 {'0'362R:G -> '0'361R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'295R:C 0 1 '0'296R:G 0 2 '0'297R:U 0 3 '0'298R:C 0 4 '0'353R:G 0 5 '0'354R:A 0 6 '0'355R:C 0 7 '0'356R:C 0 [Edges] 0 {'0'295R:C -> '0'296R:G: adjacent_5p upward } 0 1 {'0'296R:G -> '0'295R:C: adjacent_3p downward } 0 2 {'0'295R:C -> '0'356R:C: pairing antiparallel cis one_hbond 137 Wh/Ws } 0 3 {'0'356R:C -> '0'295R:C: pairing antiparallel cis one_hbond 137 Ws/Wh } 0 4 {'0'296R:G -> '0'297R:U: adjacent_5p upward } 0 5 {'0'297R:U -> '0'296R:G: adjacent_3p downward } 0 6 {'0'296R:G -> '0'355R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'355R:C -> '0'296R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'297R:U -> '0'298R:C: adjacent_5p upward } 0 9 {'0'298R:C -> '0'297R:U: adjacent_3p downward } 0 10 {'0'297R:U -> '0'354R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'354R:A -> '0'297R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'298R:C -> '0'353R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'353R:G -> '0'298R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'353R:G -> '0'354R:A: adjacent_5p upward } 0 15 {'0'354R:A -> '0'353R:G: adjacent_3p downward } 0 16 {'0'354R:A -> '0'355R:C: adjacent_5p upward } 0 17 {'0'355R:C -> '0'354R:A: adjacent_3p downward } 0 18 {'0'355R:C -> '0'356R:C: adjacent_5p upward } 0 19 {'0'356R:C -> '0'355R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'296R:G 0 1 '0'297R:U 0 2 '0'298R:C 0 3 '0'299R:U 0 4 '0'352R:A 0 5 '0'353R:G 0 6 '0'354R:A 0 7 '0'355R:C 0 [Edges] 0 {'0'296R:G -> '0'297R:U: adjacent_5p upward } 0 1 {'0'297R:U -> '0'296R:G: adjacent_3p downward } 0 2 {'0'296R:G -> '0'355R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'355R:C -> '0'296R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'297R:U -> '0'298R:C: adjacent_5p upward } 0 5 {'0'298R:C -> '0'297R:U: adjacent_3p downward } 0 6 {'0'297R:U -> '0'354R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'354R:A -> '0'297R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'298R:C -> '0'299R:U: adjacent_5p upward } 0 9 {'0'299R:U -> '0'298R:C: adjacent_3p downward } 0 10 {'0'298R:C -> '0'353R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'353R:G -> '0'298R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'299R:U -> '0'352R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'352R:A -> '0'299R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'352R:A -> '0'353R:G: adjacent_5p upward } 0 15 {'0'353R:G -> '0'352R:A: adjacent_3p downward } 0 16 {'0'353R:G -> '0'354R:A: adjacent_5p upward } 0 17 {'0'354R:A -> '0'353R:G: adjacent_3p downward } 0 18 {'0'354R:A -> '0'355R:C: adjacent_5p upward } 0 19 {'0'355R:C -> '0'354R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'297R:U 0 1 '0'298R:C 0 2 '0'299R:U 0 3 '0'300R:C 0 4 '0'351R:G 0 5 '0'352R:A 0 6 '0'353R:G 0 7 '0'354R:A 0 [Edges] 0 {'0'297R:U -> '0'298R:C: adjacent_5p upward } 0 1 {'0'298R:C -> '0'297R:U: adjacent_3p downward } 0 2 {'0'297R:U -> '0'354R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'354R:A -> '0'297R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'298R:C -> '0'299R:U: adjacent_5p upward } 0 5 {'0'299R:U -> '0'298R:C: adjacent_3p downward } 0 6 {'0'298R:C -> '0'353R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'353R:G -> '0'298R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'299R:U -> '0'300R:C: adjacent_5p } 0 9 {'0'300R:C -> '0'299R:U: adjacent_3p } 0 10 {'0'299R:U -> '0'352R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'352R:A -> '0'299R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'300R:C -> '0'351R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'351R:G -> '0'300R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'351R:G -> '0'352R:A: adjacent_5p upward } 0 15 {'0'352R:A -> '0'351R:G: adjacent_3p downward } 0 16 {'0'352R:A -> '0'353R:G: adjacent_5p upward } 0 17 {'0'353R:G -> '0'352R:A: adjacent_3p downward } 0 18 {'0'353R:G -> '0'354R:A: adjacent_5p upward } 0 19 {'0'354R:A -> '0'353R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'298R:C 0 1 '0'299R:U 0 2 '0'300R:C 0 3 '0'301R:G 0 4 '0'350R:C 0 5 '0'351R:G 0 6 '0'352R:A 0 7 '0'353R:G 0 [Edges] 0 {'0'298R:C -> '0'299R:U: adjacent_5p upward } 0 1 {'0'299R:U -> '0'298R:C: adjacent_3p downward } 0 2 {'0'298R:C -> '0'353R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'353R:G -> '0'298R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'299R:U -> '0'300R:C: adjacent_5p } 0 5 {'0'300R:C -> '0'299R:U: adjacent_3p } 0 6 {'0'299R:U -> '0'352R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'352R:A -> '0'299R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'300R:C -> '0'301R:G: adjacent_5p upward } 0 9 {'0'301R:G -> '0'300R:C: adjacent_3p downward } 0 10 {'0'300R:C -> '0'351R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'351R:G -> '0'300R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'301R:G -> '0'350R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'350R:C -> '0'301R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'301R:G -> '0'351R:G: outward } 0 15 {'0'351R:G -> '0'301R:G: outward } 0 16 {'0'350R:C -> '0'351R:G: adjacent_5p } 0 17 {'0'351R:G -> '0'350R:C: adjacent_3p } 0 18 {'0'351R:G -> '0'352R:A: adjacent_5p upward } 0 19 {'0'352R:A -> '0'351R:G: adjacent_3p downward } 0 20 {'0'352R:A -> '0'353R:G: adjacent_5p upward } 0 21 {'0'353R:G -> '0'352R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'299R:U 0 1 '0'300R:C 0 2 '0'301R:G 0 3 '0'302R:A 0 4 '0'349R:U 0 5 '0'350R:C 0 6 '0'351R:G 0 7 '0'352R:A 0 [Edges] 0 {'0'299R:U -> '0'300R:C: adjacent_5p } 0 1 {'0'300R:C -> '0'299R:U: adjacent_3p } 0 2 {'0'299R:U -> '0'352R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'352R:A -> '0'299R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'300R:C -> '0'301R:G: adjacent_5p upward } 0 5 {'0'301R:G -> '0'300R:C: adjacent_3p downward } 0 6 {'0'300R:C -> '0'351R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'351R:G -> '0'300R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'301R:G -> '0'302R:A: adjacent_5p upward } 0 9 {'0'302R:A -> '0'301R:G: adjacent_3p downward } 0 10 {'0'301R:G -> '0'350R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'350R:C -> '0'301R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'301R:G -> '0'351R:G: outward } 0 13 {'0'351R:G -> '0'301R:G: outward } 0 14 {'0'302R:A -> '0'349R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'349R:U -> '0'302R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'349R:U -> '0'350R:C: adjacent_5p upward } 0 17 {'0'350R:C -> '0'349R:U: adjacent_3p downward } 0 18 {'0'350R:C -> '0'351R:G: adjacent_5p } 0 19 {'0'351R:G -> '0'350R:C: adjacent_3p } 0 20 {'0'351R:G -> '0'352R:A: adjacent_5p upward } 0 21 {'0'352R:A -> '0'351R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'301R:G 0 1 '0'302R:A 0 2 '0'303R:C 0 3 '0'304R:G 0 4 '0'347R:A 0 5 '0'348R:C 0 6 '0'349R:U 0 7 '0'350R:C 0 [Edges] 0 {'0'301R:G -> '0'302R:A: adjacent_5p upward } 0 1 {'0'302R:A -> '0'301R:G: adjacent_3p downward } 0 2 {'0'301R:G -> '0'350R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'350R:C -> '0'301R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'302R:A -> '0'303R:C: adjacent_5p upward } 0 5 {'0'303R:C -> '0'302R:A: adjacent_3p downward } 0 6 {'0'302R:A -> '0'349R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'349R:U -> '0'302R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'303R:C -> '0'304R:G: adjacent_5p upward } 0 9 {'0'304R:G -> '0'303R:C: adjacent_3p downward } 0 10 {'0'304R:G -> '0'347R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {'0'347R:A -> '0'304R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {'0'347R:A -> '0'348R:C: adjacent_5p upward } 0 13 {'0'348R:C -> '0'347R:A: adjacent_3p downward } 0 14 {'0'348R:C -> '0'349R:U: adjacent_5p upward } 0 15 {'0'349R:U -> '0'348R:C: adjacent_3p downward } 0 16 {'0'349R:U -> '0'350R:C: adjacent_5p upward } 0 17 {'0'350R:C -> '0'349R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '0'309R:C 0 1 '0'310R:U 0 2 '0'311R:C 0 3 '0'312R:U 0 4 '0'319R:A 0 5 '0'320R:G 0 6 '0'321R:A 0 7 '0'322R:G 0 [Edges] 0 {'0'309R:C -> '0'310R:U: adjacent_5p } 0 1 {'0'310R:U -> '0'309R:C: adjacent_3p } 0 2 {'0'309R:C -> '0'322R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'322R:G -> '0'309R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'310R:U -> '0'311R:C: adjacent_5p upward } 0 5 {'0'311R:C -> '0'310R:U: adjacent_3p downward } 0 6 {'0'310R:U -> '0'321R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'321R:A -> '0'310R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'311R:C -> '0'312R:U: adjacent_5p upward } 0 9 {'0'312R:U -> '0'311R:C: adjacent_3p downward } 0 10 {'0'311R:C -> '0'320R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'320R:G -> '0'311R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'312R:U -> '0'319R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'319R:A -> '0'312R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'319R:A -> '0'320R:G: adjacent_5p upward } 0 15 {'0'320R:G -> '0'319R:A: adjacent_3p downward } 0 16 {'0'320R:G -> '0'321R:A: adjacent_5p upward } 0 17 {'0'321R:A -> '0'320R:G: adjacent_3p downward } 0 18 {'0'321R:A -> '0'322R:G: adjacent_5p upward } 0 19 {'0'322R:G -> '0'321R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'331R:A 0 1 '0'332R:G 0 2 '0'333R:G 0 3 '0'334R:G 0 4 '0'342R:C 0 5 '0'343R:C 0 6 '0'344R:C 0 7 '0'345R:G 0 [Edges] 0 {'0'331R:A -> '0'332R:G: adjacent_5p upward } 0 1 {'0'332R:G -> '0'331R:A: adjacent_3p downward } 0 2 {'0'331R:A -> '0'345R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'345R:G -> '0'331R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'332R:G -> '0'333R:G: adjacent_5p upward } 0 5 {'0'333R:G -> '0'332R:G: adjacent_3p downward } 0 6 {'0'332R:G -> '0'344R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'344R:C -> '0'332R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'333R:G -> '0'334R:G: adjacent_5p upward } 0 9 {'0'334R:G -> '0'333R:G: adjacent_3p downward } 0 10 {'0'333R:G -> '0'343R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'343R:C -> '0'333R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'334R:G -> '0'342R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'342R:C -> '0'334R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'342R:C -> '0'343R:C: adjacent_5p upward } 0 15 {'0'343R:C -> '0'342R:C: adjacent_3p downward } 0 16 {'0'343R:C -> '0'344R:C: adjacent_5p } 0 17 {'0'344R:C -> '0'343R:C: adjacent_3p } 0 18 {'0'344R:C -> '0'345R:G: adjacent_5p upward } 0 19 {'0'345R:G -> '0'344R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'382R:U 0 1 '0'383R:A 0 2 '0'384R:G 0 3 '0'385R:C 0 4 '0'404R:G 0 5 '0'405R:C 0 6 '0'406R:G 0 7 '0'407R:A 0 [Edges] 0 {'0'382R:U -> '0'383R:A: adjacent_5p upward } 0 1 {'0'383R:A -> '0'382R:U: adjacent_3p downward } 0 2 {'0'382R:U -> '0'407R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {'0'407R:A -> '0'382R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {'0'383R:A -> '0'384R:G: adjacent_5p upward } 0 5 {'0'384R:G -> '0'383R:A: adjacent_3p downward } 0 6 {'0'383R:A -> '0'406R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {'0'406R:G -> '0'383R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {'0'383R:A -> '0'407R:A: outward } 0 9 {'0'407R:A -> '0'383R:A: outward } 0 10 {'0'384R:G -> '0'385R:C: adjacent_5p upward } 0 11 {'0'385R:C -> '0'384R:G: adjacent_3p downward } 0 12 {'0'384R:G -> '0'405R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'405R:C -> '0'384R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'385R:C -> '0'404R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'404R:G -> '0'385R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'404R:G -> '0'405R:C: adjacent_5p upward } 0 17 {'0'405R:C -> '0'404R:G: adjacent_3p downward } 0 18 {'0'405R:C -> '0'406R:G: adjacent_5p upward } 0 19 {'0'406R:G -> '0'405R:C: adjacent_3p downward } 0 20 {'0'406R:G -> '0'407R:A: adjacent_5p } 0 21 {'0'407R:A -> '0'406R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'383R:A 0 1 '0'384R:G 0 2 '0'385R:C 0 3 '0'386R:G 0 4 '0'403R:C 0 5 '0'404R:G 0 6 '0'405R:C 0 7 '0'406R:G 0 [Edges] 0 {'0'383R:A -> '0'384R:G: adjacent_5p upward } 0 1 {'0'384R:G -> '0'383R:A: adjacent_3p downward } 0 2 {'0'383R:A -> '0'406R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'406R:G -> '0'383R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'384R:G -> '0'385R:C: adjacent_5p upward } 0 5 {'0'385R:C -> '0'384R:G: adjacent_3p downward } 0 6 {'0'384R:G -> '0'405R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'405R:C -> '0'384R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'385R:C -> '0'386R:G: adjacent_5p } 0 9 {'0'386R:G -> '0'385R:C: adjacent_3p } 0 10 {'0'385R:C -> '0'404R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'404R:G -> '0'385R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'386R:G -> '0'403R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'403R:C -> '0'386R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'386R:G -> '0'404R:G: outward } 0 15 {'0'404R:G -> '0'386R:G: outward } 0 16 {'0'403R:C -> '0'404R:G: adjacent_5p upward } 0 17 {'0'404R:G -> '0'403R:C: adjacent_3p downward } 0 18 {'0'404R:G -> '0'405R:C: adjacent_5p upward } 0 19 {'0'405R:C -> '0'404R:G: adjacent_3p downward } 0 20 {'0'405R:C -> '0'406R:G: adjacent_5p upward } 0 21 {'0'406R:G -> '0'405R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'384R:G 0 1 '0'385R:C 0 2 '0'386R:G 0 3 '0'387R:G 0 4 '0'402R:U 0 5 '0'403R:C 0 6 '0'404R:G 0 7 '0'405R:C 0 [Edges] 0 {'0'384R:G -> '0'385R:C: adjacent_5p upward } 0 1 {'0'385R:C -> '0'384R:G: adjacent_3p downward } 0 2 {'0'384R:G -> '0'405R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'405R:C -> '0'384R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'385R:C -> '0'386R:G: adjacent_5p } 0 5 {'0'386R:G -> '0'385R:C: adjacent_3p } 0 6 {'0'385R:C -> '0'404R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'404R:G -> '0'385R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'386R:G -> '0'387R:G: adjacent_5p upward } 0 9 {'0'387R:G -> '0'386R:G: adjacent_3p downward } 0 10 {'0'386R:G -> '0'403R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'403R:C -> '0'386R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'386R:G -> '0'404R:G: outward } 0 13 {'0'404R:G -> '0'386R:G: outward } 0 14 {'0'387R:G -> '0'402R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {'0'402R:U -> '0'387R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {'0'387R:G -> '0'403R:C: outward } 0 17 {'0'403R:C -> '0'387R:G: outward } 0 18 {'0'402R:U -> '0'403R:C: adjacent_5p upward } 0 19 {'0'403R:C -> '0'402R:U: adjacent_3p downward } 0 20 {'0'403R:C -> '0'404R:G: adjacent_5p upward } 0 21 {'0'404R:G -> '0'403R:C: adjacent_3p downward } 0 22 {'0'404R:G -> '0'405R:C: adjacent_5p upward } 0 23 {'0'405R:C -> '0'404R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 '0'385R:C 0 1 '0'386R:G 0 2 '0'387R:G 0 3 '0'388R:G 0 4 '0'401R:C 0 5 '0'402R:U 0 6 '0'403R:C 0 7 '0'404R:G 0 [Edges] 0 {'0'385R:C -> '0'386R:G: adjacent_5p } 0 1 {'0'386R:G -> '0'385R:C: adjacent_3p } 0 2 {'0'385R:C -> '0'404R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'404R:G -> '0'385R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'386R:G -> '0'387R:G: adjacent_5p upward } 0 5 {'0'387R:G -> '0'386R:G: adjacent_3p downward } 0 6 {'0'386R:G -> '0'403R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'403R:C -> '0'386R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'386R:G -> '0'404R:G: outward } 0 9 {'0'404R:G -> '0'386R:G: outward } 0 10 {'0'387R:G -> '0'388R:G: adjacent_5p upward } 0 11 {'0'388R:G -> '0'387R:G: adjacent_3p downward } 0 12 {'0'387R:G -> '0'402R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {'0'402R:U -> '0'387R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {'0'387R:G -> '0'403R:C: outward } 0 15 {'0'403R:C -> '0'387R:G: outward } 0 16 {'0'388R:G -> '0'401R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {'0'401R:C -> '0'388R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {'0'401R:C -> '0'402R:U: adjacent_5p upward } 0 19 {'0'402R:U -> '0'401R:C: adjacent_3p downward } 0 20 {'0'402R:U -> '0'403R:C: adjacent_5p upward } 0 21 {'0'403R:C -> '0'402R:U: adjacent_3p downward } 0 22 {'0'403R:C -> '0'404R:G: adjacent_5p upward } 0 23 {'0'404R:G -> '0'403R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'386R:G 0 1 '0'387R:G 0 2 '0'388R:G 0 3 '0'389R:G 0 4 '0'400R:C 0 5 '0'401R:C 0 6 '0'402R:U 0 7 '0'403R:C 0 [Edges] 0 {'0'386R:G -> '0'387R:G: adjacent_5p upward } 0 1 {'0'387R:G -> '0'386R:G: adjacent_3p downward } 0 2 {'0'386R:G -> '0'403R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'403R:C -> '0'386R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'387R:G -> '0'388R:G: adjacent_5p upward } 0 5 {'0'388R:G -> '0'387R:G: adjacent_3p downward } 0 6 {'0'387R:G -> '0'402R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'402R:U -> '0'387R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'387R:G -> '0'403R:C: outward } 0 9 {'0'403R:C -> '0'387R:G: outward } 0 10 {'0'388R:G -> '0'389R:G: adjacent_5p upward } 0 11 {'0'389R:G -> '0'388R:G: adjacent_3p downward } 0 12 {'0'388R:G -> '0'401R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'401R:C -> '0'388R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'389R:G -> '0'400R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'400R:C -> '0'389R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'400R:C -> '0'401R:C: adjacent_5p } 0 17 {'0'401R:C -> '0'400R:C: adjacent_3p } 0 18 {'0'401R:C -> '0'402R:U: adjacent_5p upward } 0 19 {'0'402R:U -> '0'401R:C: adjacent_3p downward } 0 20 {'0'402R:U -> '0'403R:C: adjacent_5p upward } 0 21 {'0'403R:C -> '0'402R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'387R:G 0 1 '0'388R:G 0 2 '0'389R:G 0 3 '0'390R:G 0 4 '0'399R:C 0 5 '0'400R:C 0 6 '0'401R:C 0 7 '0'402R:U 0 [Edges] 0 {'0'387R:G -> '0'388R:G: adjacent_5p upward } 0 1 {'0'388R:G -> '0'387R:G: adjacent_3p downward } 0 2 {'0'387R:G -> '0'402R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'402R:U -> '0'387R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'388R:G -> '0'389R:G: adjacent_5p upward } 0 5 {'0'389R:G -> '0'388R:G: adjacent_3p downward } 0 6 {'0'388R:G -> '0'401R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'401R:C -> '0'388R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'389R:G -> '0'390R:G: adjacent_5p upward } 0 9 {'0'390R:G -> '0'389R:G: adjacent_3p downward } 0 10 {'0'389R:G -> '0'400R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'400R:C -> '0'389R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'390R:G -> '0'399R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'399R:C -> '0'390R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'399R:C -> '0'400R:C: adjacent_5p upward } 0 15 {'0'400R:C -> '0'399R:C: adjacent_3p downward } 0 16 {'0'400R:C -> '0'401R:C: adjacent_5p } 0 17 {'0'401R:C -> '0'400R:C: adjacent_3p } 0 18 {'0'401R:C -> '0'402R:U: adjacent_5p upward } 0 19 {'0'402R:U -> '0'401R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'388R:G 0 1 '0'389R:G 0 2 '0'390R:G 0 3 '0'391R:U 0 4 '0'398R:U 0 5 '0'399R:C 0 6 '0'400R:C 0 7 '0'401R:C 0 [Edges] 0 {'0'388R:G -> '0'389R:G: adjacent_5p upward } 0 1 {'0'389R:G -> '0'388R:G: adjacent_3p downward } 0 2 {'0'388R:G -> '0'401R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'401R:C -> '0'388R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'389R:G -> '0'390R:G: adjacent_5p upward } 0 5 {'0'390R:G -> '0'389R:G: adjacent_3p downward } 0 6 {'0'389R:G -> '0'400R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'400R:C -> '0'389R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'390R:G -> '0'391R:U: adjacent_5p upward } 0 9 {'0'391R:U -> '0'390R:G: adjacent_3p downward } 0 10 {'0'390R:G -> '0'399R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'399R:C -> '0'390R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'391R:U -> '0'398R:U: pairing antiparallel cis XVI Ws/Ww } 0 13 {'0'398R:U -> '0'391R:U: pairing antiparallel cis XVI Ww/Ws } 0 14 {'0'398R:U -> '0'399R:C: adjacent_5p upward } 0 15 {'0'399R:C -> '0'398R:U: adjacent_3p downward } 0 16 {'0'399R:C -> '0'400R:C: adjacent_5p upward } 0 17 {'0'400R:C -> '0'399R:C: adjacent_3p downward } 0 18 {'0'400R:C -> '0'401R:C: adjacent_5p } 0 19 {'0'401R:C -> '0'400R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'412R:C 0 1 '0'413R:G 0 2 '0'414R:C 0 3 '0'415R:A 0 4 '0'425R:U 0 5 '0'426R:G 0 6 '0'427R:C 0 7 '0'428R:G 0 [Edges] 0 {'0'412R:C -> '0'413R:G: adjacent_5p upward } 0 1 {'0'413R:G -> '0'412R:C: adjacent_3p downward } 0 2 {'0'412R:C -> '0'428R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'428R:G -> '0'412R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'413R:G -> '0'414R:C: adjacent_5p upward } 0 5 {'0'414R:C -> '0'413R:G: adjacent_3p downward } 0 6 {'0'413R:G -> '0'427R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'427R:C -> '0'413R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'413R:G -> '0'428R:G: outward } 0 9 {'0'428R:G -> '0'413R:G: outward } 0 10 {'0'414R:C -> '0'415R:A: adjacent_5p upward } 0 11 {'0'415R:A -> '0'414R:C: adjacent_3p downward } 0 12 {'0'414R:C -> '0'426R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'426R:G -> '0'414R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'415R:A -> '0'425R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'425R:U -> '0'415R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'415R:A -> '0'426R:G: outward } 0 17 {'0'426R:G -> '0'415R:A: outward } 0 18 {'0'425R:U -> '0'426R:G: adjacent_5p } 0 19 {'0'426R:G -> '0'425R:U: adjacent_3p } 0 20 {'0'426R:G -> '0'427R:C: adjacent_5p upward } 0 21 {'0'427R:C -> '0'426R:G: adjacent_3p downward } 0 22 {'0'427R:C -> '0'428R:G: adjacent_5p } 0 23 {'0'428R:G -> '0'427R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'413R:G 0 1 '0'414R:C 0 2 '0'415R:A 0 3 '0'416R:G 0 4 '0'424R:C 0 5 '0'425R:U 0 6 '0'426R:G 0 7 '0'427R:C 0 [Edges] 0 {'0'413R:G -> '0'414R:C: adjacent_5p upward } 0 1 {'0'414R:C -> '0'413R:G: adjacent_3p downward } 0 2 {'0'413R:G -> '0'427R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'427R:C -> '0'413R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'414R:C -> '0'415R:A: adjacent_5p upward } 0 5 {'0'415R:A -> '0'414R:C: adjacent_3p downward } 0 6 {'0'414R:C -> '0'426R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'426R:G -> '0'414R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'415R:A -> '0'416R:G: adjacent_5p upward } 0 9 {'0'416R:G -> '0'415R:A: adjacent_3p downward } 0 10 {'0'415R:A -> '0'425R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'425R:U -> '0'415R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'415R:A -> '0'426R:G: outward } 0 13 {'0'426R:G -> '0'415R:A: outward } 0 14 {'0'416R:G -> '0'424R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'424R:C -> '0'416R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'424R:C -> '0'425R:U: adjacent_5p upward } 0 17 {'0'425R:U -> '0'424R:C: adjacent_3p downward } 0 18 {'0'425R:U -> '0'426R:G: adjacent_5p } 0 19 {'0'426R:G -> '0'425R:U: adjacent_3p } 0 20 {'0'426R:G -> '0'427R:C: adjacent_5p upward } 0 21 {'0'427R:C -> '0'426R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'418R:C 0 1 '0'419R:A 0 2 '0'420R:U 0 3 '0'421R:C 0 4 '0'2446R:G 0 5 '0'2447R:A 0 6 '0'2448R:U 0 7 '0'2449R:G 0 [Edges] 0 {'0'418R:C -> '0'419R:A: adjacent_5p } 0 1 {'0'419R:A -> '0'418R:C: adjacent_3p } 0 2 {'0'418R:C -> '0'2449R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2449R:G -> '0'418R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'419R:A -> '0'420R:U: adjacent_5p upward } 0 5 {'0'420R:U -> '0'419R:A: adjacent_3p downward } 0 6 {'0'419R:A -> '0'2448R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2448R:U -> '0'419R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'419R:A -> '0'2449R:G: outward } 0 9 {'0'2449R:G -> '0'419R:A: outward } 0 10 {'0'420R:U -> '0'421R:C: adjacent_5p upward } 0 11 {'0'421R:C -> '0'420R:U: adjacent_3p downward } 0 12 {'0'420R:U -> '0'2447R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2447R:A -> '0'420R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'421R:C -> '0'2446R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2446R:G -> '0'421R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2446R:G -> '0'2447R:A: adjacent_5p upward } 0 17 {'0'2447R:A -> '0'2446R:G: adjacent_3p downward } 0 18 {'0'2447R:A -> '0'2448R:U: adjacent_5p upward } 0 19 {'0'2448R:U -> '0'2447R:A: adjacent_3p downward } 0 20 {'0'2448R:U -> '0'2449R:G: adjacent_5p upward } 0 21 {'0'2449R:G -> '0'2448R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'419R:A 0 1 '0'420R:U 0 2 '0'421R:C 0 3 '0'422R:G 0 4 '0'2445R:U 0 5 '0'2446R:G 0 6 '0'2447R:A 0 7 '0'2448R:U 0 [Edges] 0 {'0'419R:A -> '0'420R:U: adjacent_5p upward } 0 1 {'0'420R:U -> '0'419R:A: adjacent_3p downward } 0 2 {'0'419R:A -> '0'2448R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2448R:U -> '0'419R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'420R:U -> '0'421R:C: adjacent_5p upward } 0 5 {'0'421R:C -> '0'420R:U: adjacent_3p downward } 0 6 {'0'420R:U -> '0'2447R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2447R:A -> '0'420R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'421R:C -> '0'422R:G: adjacent_5p } 0 9 {'0'422R:G -> '0'421R:C: adjacent_3p } 0 10 {'0'421R:C -> '0'2446R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2446R:G -> '0'421R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'422R:G -> '0'2445R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {'0'2445R:U -> '0'422R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {'0'422R:G -> '0'2446R:G: outward } 0 15 {'0'2446R:G -> '0'422R:G: outward } 0 16 {'0'2445R:U -> '0'2446R:G: adjacent_5p } 0 17 {'0'2446R:G -> '0'2445R:U: adjacent_3p } 0 18 {'0'2446R:G -> '0'2447R:A: adjacent_5p upward } 0 19 {'0'2447R:A -> '0'2446R:G: adjacent_3p downward } 0 20 {'0'2447R:A -> '0'2448R:U: adjacent_5p upward } 0 21 {'0'2448R:U -> '0'2447R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'420R:U 0 1 '0'421R:C 0 2 '0'422R:G 0 3 '0'423R:A 0 4 '0'2444R:U 0 5 '0'2445R:U 0 6 '0'2446R:G 0 7 '0'2447R:A 0 [Edges] 0 {'0'420R:U -> '0'421R:C: adjacent_5p upward } 0 1 {'0'421R:C -> '0'420R:U: adjacent_3p downward } 0 2 {'0'420R:U -> '0'2447R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2447R:A -> '0'420R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'421R:C -> '0'422R:G: adjacent_5p } 0 5 {'0'422R:G -> '0'421R:C: adjacent_3p } 0 6 {'0'421R:C -> '0'2446R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2446R:G -> '0'421R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'422R:G -> '0'423R:A: adjacent_5p upward } 0 9 {'0'423R:A -> '0'422R:G: adjacent_3p downward } 0 10 {'0'422R:G -> '0'2445R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'2445R:U -> '0'422R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'422R:G -> '0'2446R:G: outward } 0 13 {'0'2446R:G -> '0'422R:G: outward } 0 14 {'0'423R:A -> '0'2444R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2444R:U -> '0'423R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2444R:U -> '0'2445R:U: adjacent_5p } 0 17 {'0'2445R:U -> '0'2444R:U: adjacent_3p } 0 18 {'0'2445R:U -> '0'2446R:G: adjacent_5p } 0 19 {'0'2446R:G -> '0'2445R:U: adjacent_3p } 0 20 {'0'2446R:G -> '0'2447R:A: adjacent_5p upward } 0 21 {'0'2447R:A -> '0'2446R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'465R:U 0 1 '0'466R:A 0 2 '0'467R:G 0 3 '0'468R:U 0 4 '0'473R:A 0 5 '0'474R:C 0 6 '0'475R:G 0 7 '0'476R:A 0 [Edges] 0 {'0'465R:U -> '0'466R:A: adjacent_5p } 0 1 {'0'466R:A -> '0'465R:U: adjacent_3p } 0 2 {'0'465R:U -> '0'476R:A: pairing antiparallel trans XXIV Ww/Hh } 0 3 {'0'476R:A -> '0'465R:U: pairing antiparallel trans XXIV Hh/Ww } 0 4 {'0'466R:A -> '0'467R:G: adjacent_5p upward } 0 5 {'0'467R:G -> '0'466R:A: adjacent_3p downward } 0 6 {'0'466R:A -> '0'475R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {'0'475R:G -> '0'466R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {'0'466R:A -> '0'476R:A: outward } 0 9 {'0'476R:A -> '0'466R:A: outward } 0 10 {'0'467R:G -> '0'468R:U: adjacent_5p upward } 0 11 {'0'468R:U -> '0'467R:G: adjacent_3p downward } 0 12 {'0'467R:G -> '0'474R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'474R:C -> '0'467R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'468R:U -> '0'473R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'473R:A -> '0'468R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'473R:A -> '0'474R:C: adjacent_5p upward } 0 17 {'0'474R:C -> '0'473R:A: adjacent_3p downward } 0 18 {'0'474R:C -> '0'475R:G: adjacent_5p upward } 0 19 {'0'475R:G -> '0'474R:C: adjacent_3p downward } 0 20 {'0'475R:G -> '0'476R:A: adjacent_5p } 0 21 {'0'476R:A -> '0'475R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'466R:A 0 1 '0'467R:G 0 2 '0'468R:U 0 3 '0'469R:G 0 4 '0'472R:A 0 5 '0'473R:A 0 6 '0'474R:C 0 7 '0'475R:G 0 [Edges] 0 {'0'466R:A -> '0'467R:G: adjacent_5p upward } 0 1 {'0'467R:G -> '0'466R:A: adjacent_3p downward } 0 2 {'0'466R:A -> '0'475R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'475R:G -> '0'466R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'467R:G -> '0'468R:U: adjacent_5p upward } 0 5 {'0'468R:U -> '0'467R:G: adjacent_3p downward } 0 6 {'0'467R:G -> '0'474R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'474R:C -> '0'467R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'468R:U -> '0'469R:G: adjacent_5p upward } 0 9 {'0'469R:G -> '0'468R:U: adjacent_3p downward } 0 10 {'0'468R:U -> '0'473R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'473R:A -> '0'468R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'469R:G -> '0'472R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {'0'472R:A -> '0'469R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {'0'469R:G -> '0'473R:A: outward } 0 15 {'0'473R:A -> '0'469R:G: outward } 0 16 {'0'472R:A -> '0'473R:A: adjacent_5p } 0 17 {'0'473R:A -> '0'472R:A: adjacent_3p } 0 18 {'0'473R:A -> '0'474R:C: adjacent_5p upward } 0 19 {'0'474R:C -> '0'473R:A: adjacent_3p downward } 0 20 {'0'474R:C -> '0'475R:G: adjacent_5p upward } 0 21 {'0'475R:G -> '0'474R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'489R:A 0 1 '0'490R:C 0 2 '0'491R:C 0 3 '0'492R:C 0 4 '0'500R:G 0 5 '0'501R:G 0 6 '0'502R:A 0 7 '0'503R:G 0 [Edges] 0 {'0'489R:A -> '0'490R:C: adjacent_5p upward } 0 1 {'0'490R:C -> '0'489R:A: adjacent_3p downward } 0 2 {'0'489R:A -> '0'503R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'503R:G -> '0'489R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'490R:C -> '0'491R:C: adjacent_5p upward } 0 5 {'0'491R:C -> '0'490R:C: adjacent_3p downward } 0 6 {'0'490R:C -> '0'502R:A: pairing antiparallel cis 71 Ww/Ww } 0 7 {'0'502R:A -> '0'490R:C: pairing antiparallel cis 71 Ww/Ww } 0 8 {'0'491R:C -> '0'492R:C: adjacent_5p upward } 0 9 {'0'492R:C -> '0'491R:C: adjacent_3p downward } 0 10 {'0'491R:C -> '0'501R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'501R:G -> '0'491R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'492R:C -> '0'500R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'500R:G -> '0'492R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'500R:G -> '0'501R:G: adjacent_5p upward } 0 15 {'0'501R:G -> '0'500R:G: adjacent_3p downward } 0 16 {'0'501R:G -> '0'502R:A: adjacent_5p upward } 0 17 {'0'502R:A -> '0'501R:G: adjacent_3p downward } 0 18 {'0'502R:A -> '0'503R:G: adjacent_5p upward } 0 19 {'0'503R:G -> '0'502R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'490R:C 0 1 '0'491R:C 0 2 '0'492R:C 0 3 '0'493R:U 0 4 '0'499R:G 0 5 '0'500R:G 0 6 '0'501R:G 0 7 '0'502R:A 0 [Edges] 0 {'0'490R:C -> '0'491R:C: adjacent_5p upward } 0 1 {'0'491R:C -> '0'490R:C: adjacent_3p downward } 0 2 {'0'490R:C -> '0'502R:A: pairing antiparallel cis 71 Ww/Ww } 0 3 {'0'502R:A -> '0'490R:C: pairing antiparallel cis 71 Ww/Ww } 0 4 {'0'491R:C -> '0'492R:C: adjacent_5p upward } 0 5 {'0'492R:C -> '0'491R:C: adjacent_3p downward } 0 6 {'0'491R:C -> '0'501R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'501R:G -> '0'491R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'492R:C -> '0'493R:U: adjacent_5p upward } 0 9 {'0'493R:U -> '0'492R:C: adjacent_3p downward } 0 10 {'0'492R:C -> '0'500R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'500R:G -> '0'492R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'493R:U -> '0'499R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {'0'499R:G -> '0'493R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {'0'499R:G -> '0'500R:G: adjacent_5p upward } 0 15 {'0'500R:G -> '0'499R:G: adjacent_3p downward } 0 16 {'0'500R:G -> '0'501R:G: adjacent_5p upward } 0 17 {'0'501R:G -> '0'500R:G: adjacent_3p downward } 0 18 {'0'501R:G -> '0'502R:A: adjacent_5p upward } 0 19 {'0'502R:A -> '0'501R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'491R:C 0 1 '0'492R:C 0 2 '0'493R:U 0 3 '0'494R:C 0 4 '0'498R:A 0 5 '0'499R:G 0 6 '0'500R:G 0 7 '0'501R:G 0 [Edges] 0 {'0'491R:C -> '0'492R:C: adjacent_5p upward } 0 1 {'0'492R:C -> '0'491R:C: adjacent_3p downward } 0 2 {'0'491R:C -> '0'501R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'501R:G -> '0'491R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'492R:C -> '0'493R:U: adjacent_5p upward } 0 5 {'0'493R:U -> '0'492R:C: adjacent_3p downward } 0 6 {'0'492R:C -> '0'500R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'500R:G -> '0'492R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'493R:U -> '0'494R:C: adjacent_5p upward } 0 9 {'0'494R:C -> '0'493R:U: adjacent_3p downward } 0 10 {'0'493R:U -> '0'499R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {'0'499R:G -> '0'493R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {'0'494R:C -> '0'498R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 13 {'0'498R:A -> '0'494R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 14 {'0'498R:A -> '0'499R:G: adjacent_5p upward } 0 15 {'0'499R:G -> '0'498R:A: adjacent_3p downward } 0 16 {'0'499R:G -> '0'500R:G: adjacent_5p upward } 0 17 {'0'500R:G -> '0'499R:G: adjacent_3p downward } 0 18 {'0'500R:G -> '0'501R:G: adjacent_5p upward } 0 19 {'0'501R:G -> '0'500R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'539R:G 0 1 '0'540R:A 0 2 '0'541R:C 0 3 '0'542R:A 0 4 '0'614R:U 0 5 '0'615R:G 0 6 '0'616R:U 0 7 '0'617R:C 0 [Edges] 0 {'0'539R:G -> '0'540R:A: adjacent_5p upward } 0 1 {'0'540R:A -> '0'539R:G: adjacent_3p downward } 0 2 {'0'539R:G -> '0'617R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'617R:C -> '0'539R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'540R:A -> '0'541R:C: adjacent_5p upward } 0 5 {'0'541R:C -> '0'540R:A: adjacent_3p downward } 0 6 {'0'540R:A -> '0'616R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'616R:U -> '0'540R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'541R:C -> '0'542R:A: adjacent_5p upward } 0 9 {'0'542R:A -> '0'541R:C: adjacent_3p downward } 0 10 {'0'541R:C -> '0'615R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'615R:G -> '0'541R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'542R:A -> '0'614R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'614R:U -> '0'542R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'542R:A -> '0'615R:G: outward } 0 15 {'0'615R:G -> '0'542R:A: outward } 0 16 {'0'614R:U -> '0'615R:G: adjacent_5p } 0 17 {'0'615R:G -> '0'614R:U: adjacent_3p } 0 18 {'0'615R:G -> '0'616R:U: adjacent_5p upward } 0 19 {'0'616R:U -> '0'615R:G: adjacent_3p downward } 0 20 {'0'616R:U -> '0'617R:C: adjacent_5p upward } 0 21 {'0'617R:C -> '0'616R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'540R:A 0 1 '0'541R:C 0 2 '0'542R:A 0 3 '0'543R:G 0 4 '0'613R:C 0 5 '0'614R:U 0 6 '0'615R:G 0 7 '0'616R:U 0 [Edges] 0 {'0'540R:A -> '0'541R:C: adjacent_5p upward } 0 1 {'0'541R:C -> '0'540R:A: adjacent_3p downward } 0 2 {'0'540R:A -> '0'616R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'616R:U -> '0'540R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'541R:C -> '0'542R:A: adjacent_5p upward } 0 5 {'0'542R:A -> '0'541R:C: adjacent_3p downward } 0 6 {'0'541R:C -> '0'615R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'615R:G -> '0'541R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'542R:A -> '0'543R:G: adjacent_5p upward } 0 9 {'0'543R:G -> '0'542R:A: adjacent_3p downward } 0 10 {'0'542R:A -> '0'614R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'614R:U -> '0'542R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'542R:A -> '0'615R:G: outward } 0 13 {'0'615R:G -> '0'542R:A: outward } 0 14 {'0'543R:G -> '0'613R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'613R:C -> '0'543R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'613R:C -> '0'614R:U: adjacent_5p upward } 0 17 {'0'614R:U -> '0'613R:C: adjacent_3p downward } 0 18 {'0'614R:U -> '0'615R:G: adjacent_5p } 0 19 {'0'615R:G -> '0'614R:U: adjacent_3p } 0 20 {'0'615R:G -> '0'616R:U: adjacent_5p upward } 0 21 {'0'616R:U -> '0'615R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'541R:C 0 1 '0'542R:A 0 2 '0'543R:G 0 3 '0'544R:G 0 4 '0'612R:U 0 5 '0'613R:C 0 6 '0'614R:U 0 7 '0'615R:G 0 [Edges] 0 {'0'541R:C -> '0'542R:A: adjacent_5p upward } 0 1 {'0'542R:A -> '0'541R:C: adjacent_3p downward } 0 2 {'0'541R:C -> '0'615R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'615R:G -> '0'541R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'542R:A -> '0'543R:G: adjacent_5p upward } 0 5 {'0'543R:G -> '0'542R:A: adjacent_3p downward } 0 6 {'0'542R:A -> '0'614R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'614R:U -> '0'542R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'542R:A -> '0'615R:G: outward } 0 9 {'0'615R:G -> '0'542R:A: outward } 0 10 {'0'543R:G -> '0'544R:G: adjacent_5p upward } 0 11 {'0'544R:G -> '0'543R:G: adjacent_3p downward } 0 12 {'0'543R:G -> '0'613R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'613R:C -> '0'543R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'544R:G -> '0'612R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {'0'612R:U -> '0'544R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {'0'544R:G -> '0'613R:C: outward } 0 17 {'0'613R:C -> '0'544R:G: outward } 0 18 {'0'612R:U -> '0'613R:C: adjacent_5p } 0 19 {'0'613R:C -> '0'612R:U: adjacent_3p } 0 20 {'0'613R:C -> '0'614R:U: adjacent_5p upward } 0 21 {'0'614R:U -> '0'613R:C: adjacent_3p downward } 0 22 {'0'614R:U -> '0'615R:G: adjacent_5p } 0 23 {'0'615R:G -> '0'614R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'542R:A 0 1 '0'543R:G 0 2 '0'544R:G 0 3 '0'545R:G 0 4 '0'611R:U 0 5 '0'612R:U 0 6 '0'613R:C 0 7 '0'614R:U 0 [Edges] 0 {'0'542R:A -> '0'543R:G: adjacent_5p upward } 0 1 {'0'543R:G -> '0'542R:A: adjacent_3p downward } 0 2 {'0'542R:A -> '0'614R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'614R:U -> '0'542R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'543R:G -> '0'544R:G: adjacent_5p upward } 0 5 {'0'544R:G -> '0'543R:G: adjacent_3p downward } 0 6 {'0'543R:G -> '0'613R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'613R:C -> '0'543R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'544R:G -> '0'545R:G: adjacent_5p upward } 0 9 {'0'545R:G -> '0'544R:G: adjacent_3p downward } 0 10 {'0'544R:G -> '0'612R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'612R:U -> '0'544R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'544R:G -> '0'613R:C: outward } 0 13 {'0'613R:C -> '0'544R:G: outward } 0 14 {'0'545R:G -> '0'611R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {'0'611R:U -> '0'545R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {'0'611R:U -> '0'612R:U: adjacent_5p upward } 0 17 {'0'612R:U -> '0'611R:U: adjacent_3p downward } 0 18 {'0'612R:U -> '0'613R:C: adjacent_5p } 0 19 {'0'613R:C -> '0'612R:U: adjacent_3p } 0 20 {'0'613R:C -> '0'614R:U: adjacent_5p upward } 0 21 {'0'614R:U -> '0'613R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'543R:G 0 1 '0'544R:G 0 2 '0'545R:G 0 3 '0'546R:C 0 4 '0'610R:G 0 5 '0'611R:U 0 6 '0'612R:U 0 7 '0'613R:C 0 [Edges] 0 {'0'543R:G -> '0'544R:G: adjacent_5p upward } 0 1 {'0'544R:G -> '0'543R:G: adjacent_3p downward } 0 2 {'0'543R:G -> '0'613R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'613R:C -> '0'543R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'544R:G -> '0'545R:G: adjacent_5p upward } 0 5 {'0'545R:G -> '0'544R:G: adjacent_3p downward } 0 6 {'0'544R:G -> '0'612R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'612R:U -> '0'544R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'544R:G -> '0'613R:C: outward } 0 9 {'0'613R:C -> '0'544R:G: outward } 0 10 {'0'545R:G -> '0'546R:C: adjacent_5p upward } 0 11 {'0'546R:C -> '0'545R:G: adjacent_3p downward } 0 12 {'0'545R:G -> '0'611R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {'0'611R:U -> '0'545R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {'0'546R:C -> '0'610R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'610R:G -> '0'546R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'610R:G -> '0'611R:U: adjacent_5p upward } 0 17 {'0'611R:U -> '0'610R:G: adjacent_3p downward } 0 18 {'0'611R:U -> '0'612R:U: adjacent_5p upward } 0 19 {'0'612R:U -> '0'611R:U: adjacent_3p downward } 0 20 {'0'612R:U -> '0'613R:C: adjacent_5p } 0 21 {'0'613R:C -> '0'612R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'544R:G 0 1 '0'545R:G 0 2 '0'546R:C 0 3 '0'547R:A 0 4 '0'609R:U 0 5 '0'610R:G 0 6 '0'611R:U 0 7 '0'612R:U 0 [Edges] 0 {'0'544R:G -> '0'545R:G: adjacent_5p upward } 0 1 {'0'545R:G -> '0'544R:G: adjacent_3p downward } 0 2 {'0'544R:G -> '0'612R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'612R:U -> '0'544R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'545R:G -> '0'546R:C: adjacent_5p upward } 0 5 {'0'546R:C -> '0'545R:G: adjacent_3p downward } 0 6 {'0'545R:G -> '0'611R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'611R:U -> '0'545R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'546R:C -> '0'547R:A: adjacent_5p upward } 0 9 {'0'547R:A -> '0'546R:C: adjacent_3p downward } 0 10 {'0'546R:C -> '0'610R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'610R:G -> '0'546R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'547R:A -> '0'609R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'609R:U -> '0'547R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'547R:A -> '0'610R:G: outward } 0 15 {'0'610R:G -> '0'547R:A: outward } 0 16 {'0'609R:U -> '0'610R:G: adjacent_5p upward } 0 17 {'0'610R:G -> '0'609R:U: adjacent_3p downward } 0 18 {'0'610R:G -> '0'611R:U: adjacent_5p upward } 0 19 {'0'611R:U -> '0'610R:G: adjacent_3p downward } 0 20 {'0'611R:U -> '0'612R:U: adjacent_5p upward } 0 21 {'0'612R:U -> '0'611R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'545R:G 0 1 '0'546R:C 0 2 '0'547R:A 0 3 '0'548R:U 0 4 '0'608R:A 0 5 '0'609R:U 0 6 '0'610R:G 0 7 '0'611R:U 0 [Edges] 0 {'0'545R:G -> '0'546R:C: adjacent_5p upward } 0 1 {'0'546R:C -> '0'545R:G: adjacent_3p downward } 0 2 {'0'545R:G -> '0'611R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'611R:U -> '0'545R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'546R:C -> '0'547R:A: adjacent_5p upward } 0 5 {'0'547R:A -> '0'546R:C: adjacent_3p downward } 0 6 {'0'546R:C -> '0'610R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'610R:G -> '0'546R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'547R:A -> '0'548R:U: adjacent_5p upward } 0 9 {'0'548R:U -> '0'547R:A: adjacent_3p downward } 0 10 {'0'547R:A -> '0'609R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'609R:U -> '0'547R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'547R:A -> '0'610R:G: outward } 0 13 {'0'610R:G -> '0'547R:A: outward } 0 14 {'0'548R:U -> '0'608R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'608R:A -> '0'548R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'608R:A -> '0'609R:U: adjacent_5p upward } 0 17 {'0'609R:U -> '0'608R:A: adjacent_3p downward } 0 18 {'0'609R:U -> '0'610R:G: adjacent_5p upward } 0 19 {'0'610R:G -> '0'609R:U: adjacent_3p downward } 0 20 {'0'610R:G -> '0'611R:U: adjacent_5p upward } 0 21 {'0'611R:U -> '0'610R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'555R:U 0 1 '0'556R:C 0 2 '0'557R:C 0 3 '0'558R:C 0 4 '0'599R:G 0 5 '0'600R:G 0 6 '0'601R:G 0 7 '0'602R:A 0 [Edges] 0 {'0'555R:U -> '0'556R:C: adjacent_5p upward } 0 1 {'0'556R:C -> '0'555R:U: adjacent_3p downward } 0 2 {'0'555R:U -> '0'602R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'602R:A -> '0'555R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'556R:C -> '0'557R:C: adjacent_5p } 0 5 {'0'557R:C -> '0'556R:C: adjacent_3p } 0 6 {'0'556R:C -> '0'601R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'601R:G -> '0'556R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'557R:C -> '0'558R:C: adjacent_5p upward } 0 9 {'0'558R:C -> '0'557R:C: adjacent_3p downward } 0 10 {'0'557R:C -> '0'600R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'600R:G -> '0'557R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'558R:C -> '0'599R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'599R:G -> '0'558R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'599R:G -> '0'600R:G: adjacent_5p upward } 0 15 {'0'600R:G -> '0'599R:G: adjacent_3p downward } 0 16 {'0'600R:G -> '0'601R:G: adjacent_5p upward } 0 17 {'0'601R:G -> '0'600R:G: adjacent_3p downward } 0 18 {'0'601R:G -> '0'602R:A: adjacent_5p upward } 0 19 {'0'602R:A -> '0'601R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'556R:C 0 1 '0'557R:C 0 2 '0'558R:C 0 3 '0'559R:U 0 4 '0'598R:C 0 5 '0'599R:G 0 6 '0'600R:G 0 7 '0'601R:G 0 [Edges] 0 {'0'556R:C -> '0'557R:C: adjacent_5p } 0 1 {'0'557R:C -> '0'556R:C: adjacent_3p } 0 2 {'0'556R:C -> '0'601R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'601R:G -> '0'556R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'557R:C -> '0'558R:C: adjacent_5p upward } 0 5 {'0'558R:C -> '0'557R:C: adjacent_3p downward } 0 6 {'0'557R:C -> '0'600R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'600R:G -> '0'557R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'558R:C -> '0'559R:U: adjacent_5p } 0 9 {'0'559R:U -> '0'558R:C: adjacent_3p } 0 10 {'0'558R:C -> '0'599R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'599R:G -> '0'558R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'559R:U -> '0'598R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {'0'598R:C -> '0'559R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {'0'598R:C -> '0'599R:G: adjacent_5p upward } 0 15 {'0'599R:G -> '0'598R:C: adjacent_3p downward } 0 16 {'0'599R:G -> '0'600R:G: adjacent_5p upward } 0 17 {'0'600R:G -> '0'599R:G: adjacent_3p downward } 0 18 {'0'600R:G -> '0'601R:G: adjacent_5p upward } 0 19 {'0'601R:G -> '0'600R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'558R:C 0 1 '0'559R:U 0 2 '0'560R:C 0 3 '0'561R:G 0 4 '0'596R:C 0 5 '0'597R:A 0 6 '0'598R:C 0 7 '0'599R:G 0 [Edges] 0 {'0'558R:C -> '0'559R:U: adjacent_5p } 0 1 {'0'559R:U -> '0'558R:C: adjacent_3p } 0 2 {'0'558R:C -> '0'599R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'599R:G -> '0'558R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'559R:U -> '0'560R:C: adjacent_5p upward } 0 5 {'0'560R:C -> '0'559R:U: adjacent_3p downward } 0 6 {'0'559R:U -> '0'598R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {'0'598R:C -> '0'559R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {'0'560R:C -> '0'561R:G: adjacent_5p upward } 0 9 {'0'561R:G -> '0'560R:C: adjacent_3p downward } 0 10 {'0'561R:G -> '0'596R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'596R:C -> '0'561R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'561R:G -> '0'597R:A: outward } 0 13 {'0'597R:A -> '0'561R:G: outward } 0 14 {'0'596R:C -> '0'597R:A: adjacent_5p } 0 15 {'0'597R:A -> '0'596R:C: adjacent_3p } 0 16 {'0'597R:A -> '0'598R:C: adjacent_5p upward } 0 17 {'0'598R:C -> '0'597R:A: adjacent_3p downward } 0 18 {'0'598R:C -> '0'599R:G: adjacent_5p upward } 0 19 {'0'599R:G -> '0'598R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 12 . . 4 . . . 11 . 14 . . 5 . . . 13 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'559R:U 0 1 '0'560R:C 0 2 '0'561R:G 0 3 '0'562R:A 0 4 '0'595R:U 0 5 '0'596R:C 0 6 '0'597R:A 0 7 '0'598R:C 0 [Edges] 0 {'0'559R:U -> '0'560R:C: adjacent_5p upward } 0 1 {'0'560R:C -> '0'559R:U: adjacent_3p downward } 0 2 {'0'559R:U -> '0'598R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {'0'598R:C -> '0'559R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {'0'560R:C -> '0'561R:G: adjacent_5p upward } 0 5 {'0'561R:G -> '0'560R:C: adjacent_3p downward } 0 6 {'0'561R:G -> '0'562R:A: adjacent_5p upward } 0 7 {'0'562R:A -> '0'561R:G: adjacent_3p downward } 0 8 {'0'561R:G -> '0'596R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'596R:C -> '0'561R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'561R:G -> '0'597R:A: outward } 0 11 {'0'597R:A -> '0'561R:G: outward } 0 12 {'0'562R:A -> '0'595R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'595R:U -> '0'562R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'595R:U -> '0'596R:C: adjacent_5p upward } 0 15 {'0'596R:C -> '0'595R:U: adjacent_3p downward } 0 16 {'0'596R:C -> '0'597R:A: adjacent_5p } 0 17 {'0'597R:A -> '0'596R:C: adjacent_3p } 0 18 {'0'597R:A -> '0'598R:C: adjacent_5p upward } 0 19 {'0'598R:C -> '0'597R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 10 . 3 . . 7 . 12 . . . 4 . . . 13 . 14 . . 5 . . 9 . 15 . 16 . 6 . . 11 . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'566R:A 0 1 '0'567R:U 0 2 '0'568R:G 0 3 '0'569R:A 0 4 '0'589R:U 0 5 '0'590R:A 0 6 '0'591R:A 0 7 '0'592R:G 0 [Edges] 0 {'0'566R:A -> '0'567R:U: adjacent_5p upward } 0 1 {'0'567R:U -> '0'566R:A: adjacent_3p downward } 0 2 {'0'566R:A -> '0'592R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'592R:G -> '0'566R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'567R:U -> '0'568R:G: adjacent_5p upward } 0 5 {'0'568R:G -> '0'567R:U: adjacent_3p downward } 0 6 {'0'567R:U -> '0'591R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'591R:A -> '0'567R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'568R:G -> '0'569R:A: adjacent_5p } 0 9 {'0'569R:A -> '0'568R:G: adjacent_3p } 0 10 {'0'568R:G -> '0'590R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {'0'590R:A -> '0'568R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {'0'569R:A -> '0'589R:U: pairing antiparallel trans XXIV Hh/Ww } 0 13 {'0'589R:U -> '0'569R:A: pairing antiparallel trans XXIV Ww/Hh } 0 14 {'0'569R:A -> '0'590R:A: outward } 0 15 {'0'590R:A -> '0'569R:A: outward } 0 16 {'0'589R:U -> '0'590R:A: adjacent_5p } 0 17 {'0'590R:A -> '0'589R:U: adjacent_3p } 0 18 {'0'590R:A -> '0'591R:A: adjacent_5p upward } 0 19 {'0'591R:A -> '0'590R:A: adjacent_3p downward } 0 20 {'0'591R:A -> '0'592R:G: adjacent_5p upward } 0 21 {'0'592R:G -> '0'591R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'571R:C 0 1 '0'572R:G 0 2 '0'573R:A 0 3 '0'574R:C 0 4 '0'583R:G 0 5 '0'584R:U 0 6 '0'585R:C 0 7 '0'586R:C 0 [Edges] 0 {'0'571R:C -> '0'572R:G: adjacent_5p upward } 0 1 {'0'572R:G -> '0'571R:C: adjacent_3p downward } 0 2 {'0'571R:C -> '0'586R:C: pairing antiparallel cis one_hbond 137 Wh/Ws } 0 3 {'0'586R:C -> '0'571R:C: pairing antiparallel cis one_hbond 137 Ws/Wh } 0 4 {'0'572R:G -> '0'573R:A: adjacent_5p upward } 0 5 {'0'573R:A -> '0'572R:G: adjacent_3p downward } 0 6 {'0'572R:G -> '0'585R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'585R:C -> '0'572R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'573R:A -> '0'574R:C: adjacent_5p upward } 0 9 {'0'574R:C -> '0'573R:A: adjacent_3p downward } 0 10 {'0'573R:A -> '0'584R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'584R:U -> '0'573R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'574R:C -> '0'583R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'583R:G -> '0'574R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'583R:G -> '0'584R:U: adjacent_5p upward } 0 15 {'0'584R:U -> '0'583R:G: adjacent_3p downward } 0 16 {'0'584R:U -> '0'585R:C: adjacent_5p upward } 0 17 {'0'585R:C -> '0'584R:U: adjacent_3p downward } 0 18 {'0'585R:C -> '0'586R:C: adjacent_5p upward } 0 19 {'0'586R:C -> '0'585R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'572R:G 0 1 '0'573R:A 0 2 '0'574R:C 0 3 '0'575R:G 0 4 '0'582R:C 0 5 '0'583R:G 0 6 '0'584R:U 0 7 '0'585R:C 0 [Edges] 0 {'0'572R:G -> '0'573R:A: adjacent_5p upward } 0 1 {'0'573R:A -> '0'572R:G: adjacent_3p downward } 0 2 {'0'572R:G -> '0'585R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'585R:C -> '0'572R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'573R:A -> '0'574R:C: adjacent_5p upward } 0 5 {'0'574R:C -> '0'573R:A: adjacent_3p downward } 0 6 {'0'573R:A -> '0'584R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'584R:U -> '0'573R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'574R:C -> '0'575R:G: adjacent_5p upward } 0 9 {'0'575R:G -> '0'574R:C: adjacent_3p downward } 0 10 {'0'574R:C -> '0'583R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'583R:G -> '0'574R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'575R:G -> '0'582R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'582R:C -> '0'575R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'575R:G -> '0'583R:G: outward } 0 15 {'0'583R:G -> '0'575R:G: outward } 0 16 {'0'582R:C -> '0'583R:G: adjacent_5p } 0 17 {'0'583R:G -> '0'582R:C: adjacent_3p } 0 18 {'0'583R:G -> '0'584R:U: adjacent_5p upward } 0 19 {'0'584R:U -> '0'583R:G: adjacent_3p downward } 0 20 {'0'584R:U -> '0'585R:C: adjacent_5p upward } 0 21 {'0'585R:C -> '0'584R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'573R:A 0 1 '0'574R:C 0 2 '0'575R:G 0 3 '0'576R:C 0 4 '0'581R:G 0 5 '0'582R:C 0 6 '0'583R:G 0 7 '0'584R:U 0 [Edges] 0 {'0'573R:A -> '0'574R:C: adjacent_5p upward } 0 1 {'0'574R:C -> '0'573R:A: adjacent_3p downward } 0 2 {'0'573R:A -> '0'584R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'584R:U -> '0'573R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'574R:C -> '0'575R:G: adjacent_5p upward } 0 5 {'0'575R:G -> '0'574R:C: adjacent_3p downward } 0 6 {'0'574R:C -> '0'583R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'583R:G -> '0'574R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'575R:G -> '0'576R:C: adjacent_5p upward } 0 9 {'0'576R:C -> '0'575R:G: adjacent_3p downward } 0 10 {'0'575R:G -> '0'582R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'582R:C -> '0'575R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'575R:G -> '0'583R:G: outward } 0 13 {'0'583R:G -> '0'575R:G: outward } 0 14 {'0'576R:C -> '0'581R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'581R:G -> '0'576R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'581R:G -> '0'582R:C: adjacent_5p upward } 0 17 {'0'582R:C -> '0'581R:G: adjacent_3p downward } 0 18 {'0'582R:C -> '0'583R:G: adjacent_5p } 0 19 {'0'583R:G -> '0'582R:C: adjacent_3p } 0 20 {'0'583R:G -> '0'584R:U: adjacent_5p upward } 0 21 {'0'584R:U -> '0'583R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'620R:A 0 1 '0'621R:C 0 2 '0'622R:G 0 3 '0'623R:U 0 4 '0'632R:A 0 5 '0'633R:C 0 6 '0'634R:G 0 7 '0'635R:A 0 [Edges] 0 {'0'620R:A -> '0'621R:C: adjacent_5p upward } 0 1 {'0'621R:C -> '0'620R:A: adjacent_3p downward } 0 2 {'0'620R:A -> '0'635R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 3 {'0'635R:A -> '0'620R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 4 {'0'621R:C -> '0'622R:G: adjacent_5p upward } 0 5 {'0'622R:G -> '0'621R:C: adjacent_3p downward } 0 6 {'0'621R:C -> '0'634R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'634R:G -> '0'621R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'622R:G -> '0'623R:U: adjacent_5p upward } 0 9 {'0'623R:U -> '0'622R:G: adjacent_3p downward } 0 10 {'0'622R:G -> '0'633R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'633R:C -> '0'622R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'622R:G -> '0'634R:G: outward } 0 13 {'0'634R:G -> '0'622R:G: outward } 0 14 {'0'623R:U -> '0'632R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'632R:A -> '0'623R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'632R:A -> '0'633R:C: adjacent_5p upward } 0 17 {'0'633R:C -> '0'632R:A: adjacent_3p downward } 0 18 {'0'633R:C -> '0'634R:G: adjacent_5p } 0 19 {'0'634R:G -> '0'633R:C: adjacent_3p } 0 20 {'0'634R:G -> '0'635R:A: adjacent_5p upward } 0 21 {'0'635R:A -> '0'634R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'636R:G 0 1 '0'637R:C 0 2 '0'638R:C 0 3 '0'639R:A 0 4 '0'1362R:U 0 5 '0'1363R:G 0 6 '0'1364R:G 0 7 '0'1365R:C 0 [Edges] 0 {'0'636R:G -> '0'637R:C: adjacent_5p upward } 0 1 {'0'637R:C -> '0'636R:G: adjacent_3p downward } 0 2 {'0'636R:G -> '0'1365R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1365R:C -> '0'636R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'637R:C -> '0'638R:C: adjacent_5p upward } 0 5 {'0'638R:C -> '0'637R:C: adjacent_3p downward } 0 6 {'0'637R:C -> '0'1364R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1364R:G -> '0'637R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'638R:C -> '0'639R:A: adjacent_5p upward } 0 9 {'0'639R:A -> '0'638R:C: adjacent_3p downward } 0 10 {'0'638R:C -> '0'1363R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1363R:G -> '0'638R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'639R:A -> '0'1362R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1362R:U -> '0'639R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'639R:A -> '0'1363R:G: outward } 0 15 {'0'1363R:G -> '0'639R:A: outward } 0 16 {'0'1362R:U -> '0'1363R:G: adjacent_5p upward } 0 17 {'0'1363R:G -> '0'1362R:U: adjacent_3p downward } 0 18 {'0'1363R:G -> '0'1364R:G: adjacent_5p upward } 0 19 {'0'1364R:G -> '0'1363R:G: adjacent_3p downward } 0 20 {'0'1364R:G -> '0'1365R:C: adjacent_5p upward } 0 21 {'0'1365R:C -> '0'1364R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'637R:C 0 1 '0'638R:C 0 2 '0'639R:A 0 3 '0'640R:G 0 4 '0'1361R:C 0 5 '0'1362R:U 0 6 '0'1363R:G 0 7 '0'1364R:G 0 [Edges] 0 {'0'637R:C -> '0'638R:C: adjacent_5p upward } 0 1 {'0'638R:C -> '0'637R:C: adjacent_3p downward } 0 2 {'0'637R:C -> '0'1364R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1364R:G -> '0'637R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'638R:C -> '0'639R:A: adjacent_5p upward } 0 5 {'0'639R:A -> '0'638R:C: adjacent_3p downward } 0 6 {'0'638R:C -> '0'1363R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1363R:G -> '0'638R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'639R:A -> '0'640R:G: adjacent_5p upward } 0 9 {'0'640R:G -> '0'639R:A: adjacent_3p downward } 0 10 {'0'639R:A -> '0'1362R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1362R:U -> '0'639R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'639R:A -> '0'1363R:G: outward } 0 13 {'0'1363R:G -> '0'639R:A: outward } 0 14 {'0'640R:G -> '0'1361R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1361R:C -> '0'640R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1361R:C -> '0'1362R:U: adjacent_5p } 0 17 {'0'1362R:U -> '0'1361R:C: adjacent_3p } 0 18 {'0'1362R:U -> '0'1363R:G: adjacent_5p upward } 0 19 {'0'1363R:G -> '0'1362R:U: adjacent_3p downward } 0 20 {'0'1363R:G -> '0'1364R:G: adjacent_5p upward } 0 21 {'0'1364R:G -> '0'1363R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'638R:C 0 1 '0'639R:A 0 2 '0'640R:G 0 3 '0'641R:G 0 4 '0'1360R:C 0 5 '0'1361R:C 0 6 '0'1362R:U 0 7 '0'1363R:G 0 [Edges] 0 {'0'638R:C -> '0'639R:A: adjacent_5p upward } 0 1 {'0'639R:A -> '0'638R:C: adjacent_3p downward } 0 2 {'0'638R:C -> '0'1363R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1363R:G -> '0'638R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'639R:A -> '0'640R:G: adjacent_5p upward } 0 5 {'0'640R:G -> '0'639R:A: adjacent_3p downward } 0 6 {'0'639R:A -> '0'1362R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1362R:U -> '0'639R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'639R:A -> '0'1363R:G: outward } 0 9 {'0'1363R:G -> '0'639R:A: outward } 0 10 {'0'640R:G -> '0'641R:G: adjacent_5p upward } 0 11 {'0'641R:G -> '0'640R:G: adjacent_3p downward } 0 12 {'0'640R:G -> '0'1361R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1361R:C -> '0'640R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'641R:G -> '0'1360R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1360R:C -> '0'641R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1360R:C -> '0'1361R:C: adjacent_5p } 0 17 {'0'1361R:C -> '0'1360R:C: adjacent_3p } 0 18 {'0'1361R:C -> '0'1362R:U: adjacent_5p } 0 19 {'0'1362R:U -> '0'1361R:C: adjacent_3p } 0 20 {'0'1362R:U -> '0'1363R:G: adjacent_5p upward } 0 21 {'0'1363R:G -> '0'1362R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'646R:G 0 1 '0'647R:U 0 2 '0'648R:G 0 3 '0'649R:U 0 4 '0'756R:A 0 5 '0'757R:C 0 6 '0'758R:A 0 7 '0'759R:C 0 [Edges] 0 {'0'646R:G -> '0'647R:U: adjacent_5p upward } 0 1 {'0'647R:U -> '0'646R:G: adjacent_3p downward } 0 2 {'0'646R:G -> '0'759R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'759R:C -> '0'646R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'647R:U -> '0'648R:G: adjacent_5p upward } 0 5 {'0'648R:G -> '0'647R:U: adjacent_3p downward } 0 6 {'0'647R:U -> '0'758R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'758R:A -> '0'647R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'648R:G -> '0'649R:U: adjacent_5p upward } 0 9 {'0'649R:U -> '0'648R:G: adjacent_3p downward } 0 10 {'0'648R:G -> '0'757R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'757R:C -> '0'648R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'648R:G -> '0'758R:A: outward } 0 13 {'0'758R:A -> '0'648R:G: outward } 0 14 {'0'649R:U -> '0'756R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'756R:A -> '0'649R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'756R:A -> '0'757R:C: adjacent_5p upward } 0 17 {'0'757R:C -> '0'756R:A: adjacent_3p downward } 0 18 {'0'757R:C -> '0'758R:A: adjacent_5p upward } 0 19 {'0'758R:A -> '0'757R:C: adjacent_3p downward } 0 20 {'0'758R:A -> '0'759R:C: adjacent_5p upward } 0 21 {'0'759R:C -> '0'758R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'647R:U 0 1 '0'648R:G 0 2 '0'649R:U 0 3 '0'650R:C 0 4 '0'755R:G 0 5 '0'756R:A 0 6 '0'757R:C 0 7 '0'758R:A 0 [Edges] 0 {'0'647R:U -> '0'648R:G: adjacent_5p upward } 0 1 {'0'648R:G -> '0'647R:U: adjacent_3p downward } 0 2 {'0'647R:U -> '0'758R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'758R:A -> '0'647R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'648R:G -> '0'649R:U: adjacent_5p upward } 0 5 {'0'649R:U -> '0'648R:G: adjacent_3p downward } 0 6 {'0'648R:G -> '0'757R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'757R:C -> '0'648R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'648R:G -> '0'758R:A: outward } 0 9 {'0'758R:A -> '0'648R:G: outward } 0 10 {'0'649R:U -> '0'650R:C: adjacent_5p upward } 0 11 {'0'650R:C -> '0'649R:U: adjacent_3p downward } 0 12 {'0'649R:U -> '0'756R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'756R:A -> '0'649R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'650R:C -> '0'755R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'755R:G -> '0'650R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'755R:G -> '0'756R:A: adjacent_5p upward } 0 17 {'0'756R:A -> '0'755R:G: adjacent_3p downward } 0 18 {'0'756R:A -> '0'757R:C: adjacent_5p upward } 0 19 {'0'757R:C -> '0'756R:A: adjacent_3p downward } 0 20 {'0'757R:C -> '0'758R:A: adjacent_5p upward } 0 21 {'0'758R:A -> '0'757R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'648R:G 0 1 '0'649R:U 0 2 '0'650R:C 0 3 '0'651R:U 0 4 '0'754R:G 0 5 '0'755R:G 0 6 '0'756R:A 0 7 '0'757R:C 0 [Edges] 0 {'0'648R:G -> '0'649R:U: adjacent_5p upward } 0 1 {'0'649R:U -> '0'648R:G: adjacent_3p downward } 0 2 {'0'648R:G -> '0'757R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'757R:C -> '0'648R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'649R:U -> '0'650R:C: adjacent_5p upward } 0 5 {'0'650R:C -> '0'649R:U: adjacent_3p downward } 0 6 {'0'649R:U -> '0'756R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'756R:A -> '0'649R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'650R:C -> '0'651R:U: adjacent_5p upward } 0 9 {'0'651R:U -> '0'650R:C: adjacent_3p downward } 0 10 {'0'650R:C -> '0'755R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'755R:G -> '0'650R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'651R:U -> '0'754R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {'0'754R:G -> '0'651R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {'0'754R:G -> '0'755R:G: adjacent_5p upward } 0 15 {'0'755R:G -> '0'754R:G: adjacent_3p downward } 0 16 {'0'755R:G -> '0'756R:A: adjacent_5p upward } 0 17 {'0'756R:A -> '0'755R:G: adjacent_3p downward } 0 18 {'0'756R:A -> '0'757R:C: adjacent_5p upward } 0 19 {'0'757R:C -> '0'756R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'649R:U 0 1 '0'650R:C 0 2 '0'651R:U 0 3 '0'652R:G 0 4 '0'753R:U 0 5 '0'754R:G 0 6 '0'755R:G 0 7 '0'756R:A 0 [Edges] 0 {'0'649R:U -> '0'650R:C: adjacent_5p upward } 0 1 {'0'650R:C -> '0'649R:U: adjacent_3p downward } 0 2 {'0'649R:U -> '0'756R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'756R:A -> '0'649R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'650R:C -> '0'651R:U: adjacent_5p upward } 0 5 {'0'651R:U -> '0'650R:C: adjacent_3p downward } 0 6 {'0'650R:C -> '0'755R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'755R:G -> '0'650R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'651R:U -> '0'652R:G: adjacent_5p } 0 9 {'0'652R:G -> '0'651R:U: adjacent_3p } 0 10 {'0'651R:U -> '0'754R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {'0'754R:G -> '0'651R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {'0'652R:G -> '0'753R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {'0'753R:U -> '0'652R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {'0'652R:G -> '0'754R:G: outward } 0 15 {'0'754R:G -> '0'652R:G: outward } 0 16 {'0'753R:U -> '0'754R:G: adjacent_5p } 0 17 {'0'754R:G -> '0'753R:U: adjacent_3p } 0 18 {'0'754R:G -> '0'755R:G: adjacent_5p upward } 0 19 {'0'755R:G -> '0'754R:G: adjacent_3p downward } 0 20 {'0'755R:G -> '0'756R:A: adjacent_5p upward } 0 21 {'0'756R:A -> '0'755R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'650R:C 0 1 '0'651R:U 0 2 '0'652R:G 0 3 '0'653R:C 0 4 '0'752R:G 0 5 '0'753R:U 0 6 '0'754R:G 0 7 '0'755R:G 0 [Edges] 0 {'0'650R:C -> '0'651R:U: adjacent_5p upward } 0 1 {'0'651R:U -> '0'650R:C: adjacent_3p downward } 0 2 {'0'650R:C -> '0'755R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'755R:G -> '0'650R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'651R:U -> '0'652R:G: adjacent_5p } 0 5 {'0'652R:G -> '0'651R:U: adjacent_3p } 0 6 {'0'651R:U -> '0'754R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'754R:G -> '0'651R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'652R:G -> '0'653R:C: adjacent_5p upward } 0 9 {'0'653R:C -> '0'652R:G: adjacent_3p downward } 0 10 {'0'652R:G -> '0'753R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'753R:U -> '0'652R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'652R:G -> '0'754R:G: outward } 0 13 {'0'754R:G -> '0'652R:G: outward } 0 14 {'0'653R:C -> '0'752R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 15 {'0'752R:G -> '0'653R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 16 {'0'752R:G -> '0'753R:U: adjacent_5p upward } 0 17 {'0'753R:U -> '0'752R:G: adjacent_3p downward } 0 18 {'0'753R:U -> '0'754R:G: adjacent_5p } 0 19 {'0'754R:G -> '0'753R:U: adjacent_3p } 0 20 {'0'754R:G -> '0'755R:G: adjacent_5p upward } 0 21 {'0'755R:G -> '0'754R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'651R:U 0 1 '0'652R:G 0 2 '0'653R:C 0 3 '0'654R:A 0 4 '0'751R:U 0 5 '0'752R:G 0 6 '0'753R:U 0 7 '0'754R:G 0 [Edges] 0 {'0'651R:U -> '0'652R:G: adjacent_5p } 0 1 {'0'652R:G -> '0'651R:U: adjacent_3p } 0 2 {'0'651R:U -> '0'754R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'754R:G -> '0'651R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'652R:G -> '0'653R:C: adjacent_5p upward } 0 5 {'0'653R:C -> '0'652R:G: adjacent_3p downward } 0 6 {'0'652R:G -> '0'753R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'753R:U -> '0'652R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'652R:G -> '0'754R:G: outward } 0 9 {'0'754R:G -> '0'652R:G: outward } 0 10 {'0'653R:C -> '0'654R:A: adjacent_5p } 0 11 {'0'654R:A -> '0'653R:C: adjacent_3p } 0 12 {'0'653R:C -> '0'752R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 13 {'0'752R:G -> '0'653R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 14 {'0'654R:A -> '0'751R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'751R:U -> '0'654R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'654R:A -> '0'752R:G: outward } 0 17 {'0'752R:G -> '0'654R:A: outward } 0 18 {'0'751R:U -> '0'752R:G: adjacent_5p } 0 19 {'0'752R:G -> '0'751R:U: adjacent_3p } 0 20 {'0'752R:G -> '0'753R:U: adjacent_5p upward } 0 21 {'0'753R:U -> '0'752R:G: adjacent_3p downward } 0 22 {'0'753R:U -> '0'754R:G: adjacent_5p } 0 23 {'0'754R:G -> '0'753R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'652R:G 0 1 '0'653R:C 0 2 '0'654R:A 0 3 '0'655R:U 0 4 '0'750R:A 0 5 '0'751R:U 0 6 '0'752R:G 0 7 '0'753R:U 0 [Edges] 0 {'0'652R:G -> '0'653R:C: adjacent_5p upward } 0 1 {'0'653R:C -> '0'652R:G: adjacent_3p downward } 0 2 {'0'652R:G -> '0'753R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'753R:U -> '0'652R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'653R:C -> '0'654R:A: adjacent_5p } 0 5 {'0'654R:A -> '0'653R:C: adjacent_3p } 0 6 {'0'653R:C -> '0'752R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 7 {'0'752R:G -> '0'653R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 8 {'0'654R:A -> '0'655R:U: adjacent_5p upward } 0 9 {'0'655R:U -> '0'654R:A: adjacent_3p downward } 0 10 {'0'654R:A -> '0'751R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'751R:U -> '0'654R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'654R:A -> '0'752R:G: outward } 0 13 {'0'752R:G -> '0'654R:A: outward } 0 14 {'0'655R:U -> '0'750R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'750R:A -> '0'655R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'750R:A -> '0'751R:U: adjacent_5p upward } 0 17 {'0'751R:U -> '0'750R:A: adjacent_3p downward } 0 18 {'0'751R:U -> '0'752R:G: adjacent_5p } 0 19 {'0'752R:G -> '0'751R:U: adjacent_3p } 0 20 {'0'752R:G -> '0'753R:U: adjacent_5p upward } 0 21 {'0'753R:U -> '0'752R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'653R:C 0 1 '0'654R:A 0 2 '0'655R:U 0 3 '0'656R:G 0 4 '0'749R:C 0 5 '0'750R:A 0 6 '0'751R:U 0 7 '0'752R:G 0 [Edges] 0 {'0'653R:C -> '0'654R:A: adjacent_5p } 0 1 {'0'654R:A -> '0'653R:C: adjacent_3p } 0 2 {'0'653R:C -> '0'752R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 3 {'0'752R:G -> '0'653R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 4 {'0'654R:A -> '0'655R:U: adjacent_5p upward } 0 5 {'0'655R:U -> '0'654R:A: adjacent_3p downward } 0 6 {'0'654R:A -> '0'751R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'751R:U -> '0'654R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'654R:A -> '0'752R:G: outward } 0 9 {'0'752R:G -> '0'654R:A: outward } 0 10 {'0'655R:U -> '0'656R:G: adjacent_5p upward } 0 11 {'0'656R:G -> '0'655R:U: adjacent_3p downward } 0 12 {'0'655R:U -> '0'750R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'750R:A -> '0'655R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'656R:G -> '0'749R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'749R:C -> '0'656R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'656R:G -> '0'750R:A: outward } 0 17 {'0'750R:A -> '0'656R:G: outward } 0 18 {'0'749R:C -> '0'750R:A: adjacent_5p upward } 0 19 {'0'750R:A -> '0'749R:C: adjacent_3p downward } 0 20 {'0'750R:A -> '0'751R:U: adjacent_5p upward } 0 21 {'0'751R:U -> '0'750R:A: adjacent_3p downward } 0 22 {'0'751R:U -> '0'752R:G: adjacent_5p } 0 23 {'0'752R:G -> '0'751R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'654R:A 0 1 '0'655R:U 0 2 '0'656R:G 0 3 '0'657R:G 0 4 '0'748R:C 0 5 '0'749R:C 0 6 '0'750R:A 0 7 '0'751R:U 0 [Edges] 0 {'0'654R:A -> '0'655R:U: adjacent_5p upward } 0 1 {'0'655R:U -> '0'654R:A: adjacent_3p downward } 0 2 {'0'654R:A -> '0'751R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'751R:U -> '0'654R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'655R:U -> '0'656R:G: adjacent_5p upward } 0 5 {'0'656R:G -> '0'655R:U: adjacent_3p downward } 0 6 {'0'655R:U -> '0'750R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'750R:A -> '0'655R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'656R:G -> '0'657R:G: adjacent_5p upward } 0 9 {'0'657R:G -> '0'656R:G: adjacent_3p downward } 0 10 {'0'656R:G -> '0'749R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'749R:C -> '0'656R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'656R:G -> '0'750R:A: outward } 0 13 {'0'750R:A -> '0'656R:G: outward } 0 14 {'0'657R:G -> '0'748R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'748R:C -> '0'657R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'748R:C -> '0'749R:C: adjacent_5p upward } 0 17 {'0'749R:C -> '0'748R:C: adjacent_3p downward } 0 18 {'0'749R:C -> '0'750R:A: adjacent_5p upward } 0 19 {'0'750R:A -> '0'749R:C: adjacent_3p downward } 0 20 {'0'750R:A -> '0'751R:U: adjacent_5p upward } 0 21 {'0'751R:U -> '0'750R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'655R:U 0 1 '0'656R:G 0 2 '0'657R:G 0 3 '0'658R:C 0 4 '0'747R:G 0 5 '0'748R:C 0 6 '0'749R:C 0 7 '0'750R:A 0 [Edges] 0 {'0'655R:U -> '0'656R:G: adjacent_5p upward } 0 1 {'0'656R:G -> '0'655R:U: adjacent_3p downward } 0 2 {'0'655R:U -> '0'750R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'750R:A -> '0'655R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'656R:G -> '0'657R:G: adjacent_5p upward } 0 5 {'0'657R:G -> '0'656R:G: adjacent_3p downward } 0 6 {'0'656R:G -> '0'749R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'749R:C -> '0'656R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'656R:G -> '0'750R:A: outward } 0 9 {'0'750R:A -> '0'656R:G: outward } 0 10 {'0'657R:G -> '0'658R:C: adjacent_5p upward } 0 11 {'0'658R:C -> '0'657R:G: adjacent_3p downward } 0 12 {'0'657R:G -> '0'748R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'748R:C -> '0'657R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'658R:C -> '0'747R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'747R:G -> '0'658R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'747R:G -> '0'748R:C: adjacent_5p upward } 0 17 {'0'748R:C -> '0'747R:G: adjacent_3p downward } 0 18 {'0'748R:C -> '0'749R:C: adjacent_5p upward } 0 19 {'0'749R:C -> '0'748R:C: adjacent_3p downward } 0 20 {'0'749R:C -> '0'750R:A: adjacent_5p upward } 0 21 {'0'750R:A -> '0'749R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'661R:G 0 1 '0'662R:U 0 2 '0'663R:C 0 3 '0'664R:U 0 4 '0'682R:A 0 5 '0'683R:G 0 6 '0'684R:G 0 7 '0'685R:C 0 [Edges] 0 {'0'661R:G -> '0'662R:U: adjacent_5p upward } 0 1 {'0'662R:U -> '0'661R:G: adjacent_3p downward } 0 2 {'0'661R:G -> '0'685R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'685R:C -> '0'661R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'662R:U -> '0'663R:C: adjacent_5p upward } 0 5 {'0'663R:C -> '0'662R:U: adjacent_3p downward } 0 6 {'0'662R:U -> '0'684R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'684R:G -> '0'662R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'663R:C -> '0'664R:U: adjacent_5p } 0 9 {'0'664R:U -> '0'663R:C: adjacent_3p } 0 10 {'0'663R:C -> '0'683R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'683R:G -> '0'663R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'664R:U -> '0'682R:A: pairing antiparallel trans one_hbond Ww/Hh } 0 13 {'0'682R:A -> '0'664R:U: pairing antiparallel trans one_hbond Hh/Ww } 0 14 {'0'682R:A -> '0'683R:G: adjacent_5p upward } 0 15 {'0'683R:G -> '0'682R:A: adjacent_3p downward } 0 16 {'0'683R:G -> '0'684R:G: adjacent_5p upward } 0 17 {'0'684R:G -> '0'683R:G: adjacent_3p downward } 0 18 {'0'684R:G -> '0'685R:C: adjacent_5p upward } 0 19 {'0'685R:C -> '0'684R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'663R:C 0 1 '0'664R:U 0 2 '0'665R:A 0 3 '0'666R:A 0 4 '0'680R:G 0 5 '0'681R:G 0 6 '0'682R:A 0 7 '0'683R:G 0 [Edges] 0 {'0'663R:C -> '0'664R:U: adjacent_5p } 0 1 {'0'664R:U -> '0'663R:C: adjacent_3p } 0 2 {'0'663R:C -> '0'683R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'683R:G -> '0'663R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'664R:U -> '0'665R:A: adjacent_5p } 0 5 {'0'665R:A -> '0'664R:U: adjacent_3p } 0 6 {'0'664R:U -> '0'681R:G: downward } 0 7 {'0'681R:G -> '0'664R:U: upward } 0 8 {'0'664R:U -> '0'682R:A: pairing antiparallel trans one_hbond Ww/Hh } 0 9 {'0'682R:A -> '0'664R:U: pairing antiparallel trans one_hbond Hh/Ww } 0 10 {'0'665R:A -> '0'666R:A: adjacent_5p upward } 0 11 {'0'666R:A -> '0'665R:A: adjacent_3p downward } 0 12 {'0'665R:A -> '0'682R:A: outward } 0 13 {'0'682R:A -> '0'665R:A: outward } 0 14 {'0'666R:A -> '0'680R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {'0'680R:G -> '0'666R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {'0'680R:G -> '0'681R:G: adjacent_5p } 0 17 {'0'681R:G -> '0'680R:G: adjacent_3p } 0 18 {'0'681R:G -> '0'682R:A: adjacent_5p } 0 19 {'0'682R:A -> '0'681R:G: adjacent_3p } 0 20 {'0'682R:A -> '0'683R:G: adjacent_5p upward } 0 21 {'0'683R:G -> '0'682R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . . 12 . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . 7 . . 17 . 18 . 6 . 9 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'664R:U 0 1 '0'665R:A 0 2 '0'666R:A 0 3 '0'667R:C 0 4 '0'679R:G 0 5 '0'680R:G 0 6 '0'681R:G 0 7 '0'682R:A 0 [Edges] 0 {'0'664R:U -> '0'665R:A: adjacent_5p } 0 1 {'0'665R:A -> '0'664R:U: adjacent_3p } 0 2 {'0'664R:U -> '0'681R:G: downward } 0 3 {'0'681R:G -> '0'664R:U: upward } 0 4 {'0'664R:U -> '0'682R:A: pairing antiparallel trans one_hbond Ww/Hh } 0 5 {'0'682R:A -> '0'664R:U: pairing antiparallel trans one_hbond Hh/Ww } 0 6 {'0'665R:A -> '0'666R:A: adjacent_5p upward } 0 7 {'0'666R:A -> '0'665R:A: adjacent_3p downward } 0 8 {'0'665R:A -> '0'682R:A: outward } 0 9 {'0'682R:A -> '0'665R:A: outward } 0 10 {'0'666R:A -> '0'667R:C: adjacent_5p upward } 0 11 {'0'667R:C -> '0'666R:A: adjacent_3p downward } 0 12 {'0'666R:A -> '0'680R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {'0'680R:G -> '0'666R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {'0'667R:C -> '0'679R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'679R:G -> '0'667R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'679R:G -> '0'680R:G: adjacent_5p upward } 0 17 {'0'680R:G -> '0'679R:G: adjacent_3p downward } 0 18 {'0'680R:G -> '0'681R:G: adjacent_5p } 0 19 {'0'681R:G -> '0'680R:G: adjacent_3p } 0 20 {'0'681R:G -> '0'682R:A: adjacent_5p } 0 21 {'0'682R:A -> '0'681R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . . 8 2 . 7 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 3 . . . . 19 . 20 7 5 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'666R:A 0 1 '0'667R:C 0 2 '0'668R:C 0 3 '0'669R:G 0 4 '0'677R:C 0 5 '0'678R:G 0 6 '0'679R:G 0 7 '0'680R:G 0 [Edges] 0 {'0'666R:A -> '0'667R:C: adjacent_5p upward } 0 1 {'0'667R:C -> '0'666R:A: adjacent_3p downward } 0 2 {'0'666R:A -> '0'680R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'680R:G -> '0'666R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'667R:C -> '0'668R:C: adjacent_5p } 0 5 {'0'668R:C -> '0'667R:C: adjacent_3p } 0 6 {'0'667R:C -> '0'679R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'679R:G -> '0'667R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'668R:C -> '0'669R:G: adjacent_5p } 0 9 {'0'669R:G -> '0'668R:C: adjacent_3p } 0 10 {'0'668R:C -> '0'678R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'678R:G -> '0'668R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'669R:G -> '0'677R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'677R:C -> '0'669R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'669R:G -> '0'678R:G: outward } 0 15 {'0'678R:G -> '0'669R:G: outward } 0 16 {'0'677R:C -> '0'678R:G: adjacent_5p upward } 0 17 {'0'678R:G -> '0'677R:C: adjacent_3p downward } 0 18 {'0'678R:G -> '0'679R:G: adjacent_5p upward } 0 19 {'0'679R:G -> '0'678R:G: adjacent_3p downward } 0 20 {'0'679R:G -> '0'680R:G: adjacent_5p upward } 0 21 {'0'680R:G -> '0'679R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'667R:C 0 1 '0'668R:C 0 2 '0'669R:G 0 3 '0'670R:G 0 4 '0'676R:C 0 5 '0'677R:C 0 6 '0'678R:G 0 7 '0'679R:G 0 [Edges] 0 {'0'667R:C -> '0'668R:C: adjacent_5p } 0 1 {'0'668R:C -> '0'667R:C: adjacent_3p } 0 2 {'0'667R:C -> '0'679R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'679R:G -> '0'667R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'668R:C -> '0'669R:G: adjacent_5p } 0 5 {'0'669R:G -> '0'668R:C: adjacent_3p } 0 6 {'0'668R:C -> '0'678R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'678R:G -> '0'668R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'669R:G -> '0'670R:G: adjacent_5p upward } 0 9 {'0'670R:G -> '0'669R:G: adjacent_3p downward } 0 10 {'0'669R:G -> '0'677R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'677R:C -> '0'669R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'669R:G -> '0'678R:G: outward } 0 13 {'0'678R:G -> '0'669R:G: outward } 0 14 {'0'670R:G -> '0'676R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'676R:C -> '0'670R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'676R:C -> '0'677R:C: adjacent_5p } 0 17 {'0'677R:C -> '0'676R:C: adjacent_3p } 0 18 {'0'677R:C -> '0'678R:G: adjacent_5p upward } 0 19 {'0'678R:G -> '0'677R:C: adjacent_3p downward } 0 20 {'0'678R:G -> '0'679R:G: adjacent_5p upward } 0 21 {'0'679R:G -> '0'678R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'668R:C 0 1 '0'669R:G 0 2 '0'670R:G 0 3 '0'671R:A 0 4 '0'675R:U 0 5 '0'676R:C 0 6 '0'677R:C 0 7 '0'678R:G 0 [Edges] 0 {'0'668R:C -> '0'669R:G: adjacent_5p } 0 1 {'0'669R:G -> '0'668R:C: adjacent_3p } 0 2 {'0'668R:C -> '0'678R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'678R:G -> '0'668R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'669R:G -> '0'670R:G: adjacent_5p upward } 0 5 {'0'670R:G -> '0'669R:G: adjacent_3p downward } 0 6 {'0'669R:G -> '0'677R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'677R:C -> '0'669R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'669R:G -> '0'678R:G: outward } 0 9 {'0'678R:G -> '0'669R:G: outward } 0 10 {'0'670R:G -> '0'671R:A: adjacent_5p upward } 0 11 {'0'671R:A -> '0'670R:G: adjacent_3p downward } 0 12 {'0'670R:G -> '0'676R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'676R:C -> '0'670R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'671R:A -> '0'675R:U: pairing antiparallel trans one_hbond Bs/Hw } 0 15 {'0'675R:U -> '0'671R:A: pairing antiparallel trans one_hbond Hw/Bs } 0 16 {'0'675R:U -> '0'676R:C: adjacent_5p upward } 0 17 {'0'676R:C -> '0'675R:U: adjacent_3p downward } 0 18 {'0'676R:C -> '0'677R:C: adjacent_5p } 0 19 {'0'677R:C -> '0'676R:C: adjacent_3p } 0 20 {'0'677R:C -> '0'678R:G: adjacent_5p upward } 0 21 {'0'678R:G -> '0'677R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'702R:G 0 1 '0'703R:G 0 2 '0'704R:C 0 3 '0'705R:C 0 4 '0'723R:G 0 5 '0'724R:G 0 6 '0'725R:C 0 7 '0'726R:C 0 [Edges] 0 {'0'702R:G -> '0'703R:G: adjacent_5p upward } 0 1 {'0'703R:G -> '0'702R:G: adjacent_3p downward } 0 2 {'0'702R:G -> '0'726R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'726R:C -> '0'702R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'703R:G -> '0'704R:C: adjacent_5p upward } 0 5 {'0'704R:C -> '0'703R:G: adjacent_3p downward } 0 6 {'0'703R:G -> '0'725R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'725R:C -> '0'703R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'704R:C -> '0'705R:C: adjacent_5p upward } 0 9 {'0'705R:C -> '0'704R:C: adjacent_3p downward } 0 10 {'0'704R:C -> '0'724R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'724R:G -> '0'704R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'705R:C -> '0'723R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'723R:G -> '0'705R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'705R:C -> '0'724R:G: outward } 0 15 {'0'724R:G -> '0'705R:C: outward } 0 16 {'0'723R:G -> '0'724R:G: adjacent_5p upward } 0 17 {'0'724R:G -> '0'723R:G: adjacent_3p downward } 0 18 {'0'724R:G -> '0'725R:C: adjacent_5p upward } 0 19 {'0'725R:C -> '0'724R:G: adjacent_3p downward } 0 20 {'0'725R:C -> '0'726R:C: adjacent_5p } 0 21 {'0'726R:C -> '0'725R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'703R:G 0 1 '0'704R:C 0 2 '0'705R:C 0 3 '0'706R:G 0 4 '0'722R:G 0 5 '0'723R:G 0 6 '0'724R:G 0 7 '0'725R:C 0 [Edges] 0 {'0'703R:G -> '0'704R:C: adjacent_5p upward } 0 1 {'0'704R:C -> '0'703R:G: adjacent_3p downward } 0 2 {'0'703R:G -> '0'725R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'725R:C -> '0'703R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'704R:C -> '0'705R:C: adjacent_5p upward } 0 5 {'0'705R:C -> '0'704R:C: adjacent_3p downward } 0 6 {'0'704R:C -> '0'724R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'724R:G -> '0'704R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'705R:C -> '0'706R:G: adjacent_5p upward } 0 9 {'0'706R:G -> '0'705R:C: adjacent_3p downward } 0 10 {'0'705R:C -> '0'723R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'723R:G -> '0'705R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'705R:C -> '0'724R:G: outward } 0 13 {'0'724R:G -> '0'705R:C: outward } 0 14 {'0'706R:G -> '0'722R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 15 {'0'722R:G -> '0'706R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 16 {'0'722R:G -> '0'723R:G: adjacent_5p upward } 0 17 {'0'723R:G -> '0'722R:G: adjacent_3p downward } 0 18 {'0'723R:G -> '0'724R:G: adjacent_5p upward } 0 19 {'0'724R:G -> '0'723R:G: adjacent_3p downward } 0 20 {'0'724R:G -> '0'725R:C: adjacent_5p upward } 0 21 {'0'725R:C -> '0'724R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'704R:C 0 1 '0'705R:C 0 2 '0'706R:G 0 3 '0'707R:C 0 4 '0'721R:A 0 5 '0'722R:G 0 6 '0'723R:G 0 7 '0'724R:G 0 [Edges] 0 {'0'704R:C -> '0'705R:C: adjacent_5p upward } 0 1 {'0'705R:C -> '0'704R:C: adjacent_3p downward } 0 2 {'0'704R:C -> '0'724R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'724R:G -> '0'704R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'705R:C -> '0'706R:G: adjacent_5p upward } 0 5 {'0'706R:G -> '0'705R:C: adjacent_3p downward } 0 6 {'0'705R:C -> '0'723R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'723R:G -> '0'705R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'705R:C -> '0'724R:G: outward } 0 9 {'0'724R:G -> '0'705R:C: outward } 0 10 {'0'706R:G -> '0'707R:C: adjacent_5p } 0 11 {'0'707R:C -> '0'706R:G: adjacent_3p } 0 12 {'0'706R:G -> '0'722R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 13 {'0'722R:G -> '0'706R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 14 {'0'707R:C -> '0'721R:A: pairing antiparallel trans XXV Ww/Hh } 0 15 {'0'721R:A -> '0'707R:C: pairing antiparallel trans XXV Hh/Ww } 0 16 {'0'721R:A -> '0'722R:G: adjacent_5p upward } 0 17 {'0'722R:G -> '0'721R:A: adjacent_3p downward } 0 18 {'0'722R:G -> '0'723R:G: adjacent_5p upward } 0 19 {'0'723R:G -> '0'722R:G: adjacent_3p downward } 0 20 {'0'723R:G -> '0'724R:G: adjacent_5p upward } 0 21 {'0'724R:G -> '0'723R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'705R:C 0 1 '0'706R:G 0 2 '0'707R:C 0 3 '0'708R:A 0 4 '0'720R:G 0 5 '0'721R:A 0 6 '0'722R:G 0 7 '0'723R:G 0 [Edges] 0 {'0'705R:C -> '0'706R:G: adjacent_5p upward } 0 1 {'0'706R:G -> '0'705R:C: adjacent_3p downward } 0 2 {'0'705R:C -> '0'723R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'723R:G -> '0'705R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'706R:G -> '0'707R:C: adjacent_5p } 0 5 {'0'707R:C -> '0'706R:G: adjacent_3p } 0 6 {'0'706R:G -> '0'720R:G: inward } 0 7 {'0'720R:G -> '0'706R:G: inward } 0 8 {'0'706R:G -> '0'722R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 9 {'0'722R:G -> '0'706R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 10 {'0'707R:C -> '0'708R:A: adjacent_5p upward } 0 11 {'0'708R:A -> '0'707R:C: adjacent_3p downward } 0 12 {'0'707R:C -> '0'721R:A: pairing antiparallel trans XXV Ww/Hh } 0 13 {'0'721R:A -> '0'707R:C: pairing antiparallel trans XXV Hh/Ww } 0 14 {'0'708R:A -> '0'720R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {'0'720R:G -> '0'708R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {'0'720R:G -> '0'721R:A: adjacent_5p } 0 17 {'0'721R:A -> '0'720R:G: adjacent_3p } 0 18 {'0'721R:A -> '0'722R:G: adjacent_5p upward } 0 19 {'0'722R:G -> '0'721R:A: adjacent_3p downward } 0 20 {'0'722R:G -> '0'723R:G: adjacent_5p upward } 0 21 {'0'723R:G -> '0'722R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . 8 . 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . 7 . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 9 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'706R:G 0 1 '0'707R:C 0 2 '0'708R:A 0 3 '0'709R:G 0 4 '0'719R:C 0 5 '0'720R:G 0 6 '0'721R:A 0 7 '0'722R:G 0 [Edges] 0 {'0'706R:G -> '0'707R:C: adjacent_5p } 0 1 {'0'707R:C -> '0'706R:G: adjacent_3p } 0 2 {'0'706R:G -> '0'720R:G: inward } 0 3 {'0'720R:G -> '0'706R:G: inward } 0 4 {'0'706R:G -> '0'722R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 5 {'0'722R:G -> '0'706R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 6 {'0'707R:C -> '0'708R:A: adjacent_5p upward } 0 7 {'0'708R:A -> '0'707R:C: adjacent_3p downward } 0 8 {'0'707R:C -> '0'721R:A: pairing antiparallel trans XXV Ww/Hh } 0 9 {'0'721R:A -> '0'707R:C: pairing antiparallel trans XXV Hh/Ww } 0 10 {'0'708R:A -> '0'709R:G: adjacent_5p upward } 0 11 {'0'709R:G -> '0'708R:A: adjacent_3p downward } 0 12 {'0'708R:A -> '0'720R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {'0'720R:G -> '0'708R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {'0'709R:G -> '0'719R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'719R:C -> '0'709R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'719R:C -> '0'720R:G: adjacent_5p upward } 0 17 {'0'720R:G -> '0'719R:C: adjacent_3p downward } 0 18 {'0'720R:G -> '0'721R:A: adjacent_5p } 0 19 {'0'721R:A -> '0'720R:G: adjacent_3p } 0 20 {'0'721R:A -> '0'722R:G: adjacent_5p upward } 0 21 {'0'722R:G -> '0'721R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 . 4 1 1 . 6 . . . 8 . 2 . 7 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 3 . 13 . 17 . 18 . 6 . 9 . . . 19 . 20 7 5 . . . . . 21 . [GraphModel] [Vertices] 0 '0'707R:C 0 1 '0'708R:A 0 2 '0'709R:G 0 3 '0'710R:G 0 4 '0'718R:C 0 5 '0'719R:C 0 6 '0'720R:G 0 7 '0'721R:A 0 [Edges] 0 {'0'707R:C -> '0'708R:A: adjacent_5p upward } 0 1 {'0'708R:A -> '0'707R:C: adjacent_3p downward } 0 2 {'0'707R:C -> '0'721R:A: pairing antiparallel trans XXV Ww/Hh } 0 3 {'0'721R:A -> '0'707R:C: pairing antiparallel trans XXV Hh/Ww } 0 4 {'0'708R:A -> '0'709R:G: adjacent_5p upward } 0 5 {'0'709R:G -> '0'708R:A: adjacent_3p downward } 0 6 {'0'708R:A -> '0'720R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {'0'720R:G -> '0'708R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {'0'709R:G -> '0'710R:G: adjacent_5p upward } 0 9 {'0'710R:G -> '0'709R:G: adjacent_3p downward } 0 10 {'0'709R:G -> '0'719R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'719R:C -> '0'709R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'710R:G -> '0'718R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'718R:C -> '0'710R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'718R:C -> '0'719R:C: adjacent_5p } 0 15 {'0'719R:C -> '0'718R:C: adjacent_3p } 0 16 {'0'719R:C -> '0'720R:G: adjacent_5p upward } 0 17 {'0'720R:G -> '0'719R:C: adjacent_3p downward } 0 18 {'0'720R:G -> '0'721R:A: adjacent_5p } 0 19 {'0'721R:A -> '0'720R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'708R:A 0 1 '0'709R:G 0 2 '0'710R:G 0 3 '0'711R:G 0 4 '0'717R:C 0 5 '0'718R:C 0 6 '0'719R:C 0 7 '0'720R:G 0 [Edges] 0 {'0'708R:A -> '0'709R:G: adjacent_5p upward } 0 1 {'0'709R:G -> '0'708R:A: adjacent_3p downward } 0 2 {'0'708R:A -> '0'720R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'720R:G -> '0'708R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'709R:G -> '0'710R:G: adjacent_5p upward } 0 5 {'0'710R:G -> '0'709R:G: adjacent_3p downward } 0 6 {'0'709R:G -> '0'719R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'719R:C -> '0'709R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'710R:G -> '0'711R:G: adjacent_5p upward } 0 9 {'0'711R:G -> '0'710R:G: adjacent_3p downward } 0 10 {'0'710R:G -> '0'718R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'718R:C -> '0'710R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'711R:G -> '0'717R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'717R:C -> '0'711R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'717R:C -> '0'718R:C: adjacent_5p upward } 0 15 {'0'718R:C -> '0'717R:C: adjacent_3p downward } 0 16 {'0'718R:C -> '0'719R:C: adjacent_5p } 0 17 {'0'719R:C -> '0'718R:C: adjacent_3p } 0 18 {'0'719R:C -> '0'720R:G: adjacent_5p upward } 0 19 {'0'720R:G -> '0'719R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'728R:C 0 1 '0'729R:C 0 2 '0'730R:G 0 3 '0'731R:U 0 4 '0'740R:G 0 5 '0'741R:C 0 6 '0'742R:G 0 7 '0'743R:G 0 [Edges] 0 {'0'728R:C -> '0'729R:C: adjacent_5p upward } 0 1 {'0'729R:C -> '0'728R:C: adjacent_3p downward } 0 2 {'0'728R:C -> '0'743R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'743R:G -> '0'728R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'729R:C -> '0'730R:G: adjacent_5p } 0 5 {'0'730R:G -> '0'729R:C: adjacent_3p } 0 6 {'0'729R:C -> '0'742R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'742R:G -> '0'729R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'729R:C -> '0'743R:G: outward } 0 9 {'0'743R:G -> '0'729R:C: outward } 0 10 {'0'730R:G -> '0'731R:U: adjacent_5p upward } 0 11 {'0'731R:U -> '0'730R:G: adjacent_3p downward } 0 12 {'0'730R:G -> '0'741R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'741R:C -> '0'730R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'730R:G -> '0'742R:G: outward } 0 15 {'0'742R:G -> '0'730R:G: outward } 0 16 {'0'731R:U -> '0'740R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 17 {'0'740R:G -> '0'731R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 18 {'0'740R:G -> '0'741R:C: adjacent_5p upward } 0 19 {'0'741R:C -> '0'740R:G: adjacent_3p downward } 0 20 {'0'741R:C -> '0'742R:G: adjacent_5p upward } 0 21 {'0'742R:G -> '0'741R:C: adjacent_3p downward } 0 22 {'0'742R:G -> '0'743R:G: adjacent_5p upward } 0 23 {'0'743R:G -> '0'742R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'729R:C 0 1 '0'730R:G 0 2 '0'731R:U 0 3 '0'732R:C 0 4 '0'739R:G 0 5 '0'740R:G 0 6 '0'741R:C 0 7 '0'742R:G 0 [Edges] 0 {'0'729R:C -> '0'730R:G: adjacent_5p } 0 1 {'0'730R:G -> '0'729R:C: adjacent_3p } 0 2 {'0'729R:C -> '0'742R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'742R:G -> '0'729R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'730R:G -> '0'731R:U: adjacent_5p upward } 0 5 {'0'731R:U -> '0'730R:G: adjacent_3p downward } 0 6 {'0'730R:G -> '0'741R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'741R:C -> '0'730R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'730R:G -> '0'742R:G: outward } 0 9 {'0'742R:G -> '0'730R:G: outward } 0 10 {'0'731R:U -> '0'732R:C: adjacent_5p } 0 11 {'0'732R:C -> '0'731R:U: adjacent_3p } 0 12 {'0'731R:U -> '0'740R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {'0'740R:G -> '0'731R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {'0'732R:C -> '0'739R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'739R:G -> '0'732R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'739R:G -> '0'740R:G: adjacent_5p upward } 0 17 {'0'740R:G -> '0'739R:G: adjacent_3p downward } 0 18 {'0'740R:G -> '0'741R:C: adjacent_5p upward } 0 19 {'0'741R:C -> '0'740R:G: adjacent_3p downward } 0 20 {'0'741R:C -> '0'742R:G: adjacent_5p upward } 0 21 {'0'742R:G -> '0'741R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'730R:G 0 1 '0'731R:U 0 2 '0'732R:C 0 3 '0'733R:U 0 4 '0'738R:G 0 5 '0'739R:G 0 6 '0'740R:G 0 7 '0'741R:C 0 [Edges] 0 {'0'730R:G -> '0'731R:U: adjacent_5p upward } 0 1 {'0'731R:U -> '0'730R:G: adjacent_3p downward } 0 2 {'0'730R:G -> '0'741R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'741R:C -> '0'730R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'731R:U -> '0'732R:C: adjacent_5p } 0 5 {'0'732R:C -> '0'731R:U: adjacent_3p } 0 6 {'0'731R:U -> '0'740R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'740R:G -> '0'731R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'732R:C -> '0'733R:U: adjacent_5p upward } 0 9 {'0'733R:U -> '0'732R:C: adjacent_3p downward } 0 10 {'0'732R:C -> '0'739R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'739R:G -> '0'732R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'733R:U -> '0'738R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {'0'738R:G -> '0'733R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {'0'738R:G -> '0'739R:G: adjacent_5p upward } 0 15 {'0'739R:G -> '0'738R:G: adjacent_3p downward } 0 16 {'0'739R:G -> '0'740R:G: adjacent_5p upward } 0 17 {'0'740R:G -> '0'739R:G: adjacent_3p downward } 0 18 {'0'740R:G -> '0'741R:C: adjacent_5p upward } 0 19 {'0'741R:C -> '0'740R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'762R:C 0 1 '0'763R:C 0 2 '0'764R:C 0 3 '0'765R:G 0 4 '0'899R:C 0 5 '0'900R:U 0 6 '0'901R:G 0 7 '0'902R:G 0 [Edges] 0 {'0'762R:C -> '0'763R:C: adjacent_5p upward } 0 1 {'0'763R:C -> '0'762R:C: adjacent_3p downward } 0 2 {'0'762R:C -> '0'902R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'902R:G -> '0'762R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'763R:C -> '0'764R:C: adjacent_5p } 0 5 {'0'764R:C -> '0'763R:C: adjacent_3p } 0 6 {'0'763R:C -> '0'901R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'901R:G -> '0'763R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'764R:C -> '0'765R:G: adjacent_5p upward } 0 9 {'0'765R:G -> '0'764R:C: adjacent_3p downward } 0 10 {'0'764R:C -> '0'900R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {'0'900R:U -> '0'764R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {'0'765R:G -> '0'899R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'899R:C -> '0'765R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'899R:C -> '0'900R:U: adjacent_5p } 0 15 {'0'900R:U -> '0'899R:C: adjacent_3p } 0 16 {'0'900R:U -> '0'901R:G: adjacent_5p upward } 0 17 {'0'901R:G -> '0'900R:U: adjacent_3p downward } 0 18 {'0'901R:G -> '0'902R:G: adjacent_5p upward } 0 19 {'0'902R:G -> '0'901R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'768R:U 0 1 '0'769R:C 0 2 '0'770R:C 0 3 '0'771R:G 0 4 '0'890R:C 0 5 '0'891R:G 0 6 '0'892R:G 0 7 '0'893R:C 0 [Edges] 0 {'0'768R:U -> '0'769R:C: adjacent_5p upward } 0 1 {'0'769R:C -> '0'768R:U: adjacent_3p downward } 0 2 {'0'768R:U -> '0'893R:C: pairing parallel trans one_hbond 105 Wh/Wh } 0 3 {'0'893R:C -> '0'768R:U: pairing parallel trans one_hbond 105 Wh/Wh } 0 4 {'0'769R:C -> '0'770R:C: adjacent_5p upward } 0 5 {'0'770R:C -> '0'769R:C: adjacent_3p downward } 0 6 {'0'769R:C -> '0'892R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'892R:G -> '0'769R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'770R:C -> '0'771R:G: adjacent_5p } 0 9 {'0'771R:G -> '0'770R:C: adjacent_3p } 0 10 {'0'770R:C -> '0'891R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'891R:G -> '0'770R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'771R:G -> '0'890R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'890R:C -> '0'771R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'771R:G -> '0'891R:G: outward } 0 15 {'0'891R:G -> '0'771R:G: outward } 0 16 {'0'890R:C -> '0'891R:G: adjacent_5p upward } 0 17 {'0'891R:G -> '0'890R:C: adjacent_3p downward } 0 18 {'0'891R:G -> '0'892R:G: adjacent_5p upward } 0 19 {'0'892R:G -> '0'891R:G: adjacent_3p downward } 0 20 {'0'892R:G -> '0'893R:C: adjacent_5p inward } 0 21 {'0'893R:C -> '0'892R:G: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'769R:C 0 1 '0'770R:C 0 2 '0'771R:G 0 3 '0'772R:G 0 4 '0'889R:C 0 5 '0'890R:C 0 6 '0'891R:G 0 7 '0'892R:G 0 [Edges] 0 {'0'769R:C -> '0'770R:C: adjacent_5p upward } 0 1 {'0'770R:C -> '0'769R:C: adjacent_3p downward } 0 2 {'0'769R:C -> '0'892R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'892R:G -> '0'769R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'770R:C -> '0'771R:G: adjacent_5p } 0 5 {'0'771R:G -> '0'770R:C: adjacent_3p } 0 6 {'0'770R:C -> '0'891R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'891R:G -> '0'770R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'771R:G -> '0'772R:G: adjacent_5p upward } 0 9 {'0'772R:G -> '0'771R:G: adjacent_3p downward } 0 10 {'0'771R:G -> '0'890R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'890R:C -> '0'771R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'771R:G -> '0'891R:G: outward } 0 13 {'0'891R:G -> '0'771R:G: outward } 0 14 {'0'772R:G -> '0'889R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'889R:C -> '0'772R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'889R:C -> '0'890R:C: adjacent_5p upward } 0 17 {'0'890R:C -> '0'889R:C: adjacent_3p downward } 0 18 {'0'890R:C -> '0'891R:G: adjacent_5p upward } 0 19 {'0'891R:G -> '0'890R:C: adjacent_3p downward } 0 20 {'0'891R:G -> '0'892R:G: adjacent_5p upward } 0 21 {'0'892R:G -> '0'891R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'770R:C 0 1 '0'771R:G 0 2 '0'772R:G 0 3 '0'773R:A 0 4 '0'888R:U 0 5 '0'889R:C 0 6 '0'890R:C 0 7 '0'891R:G 0 [Edges] 0 {'0'770R:C -> '0'771R:G: adjacent_5p } 0 1 {'0'771R:G -> '0'770R:C: adjacent_3p } 0 2 {'0'770R:C -> '0'891R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'891R:G -> '0'770R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'771R:G -> '0'772R:G: adjacent_5p upward } 0 5 {'0'772R:G -> '0'771R:G: adjacent_3p downward } 0 6 {'0'771R:G -> '0'890R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'890R:C -> '0'771R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'771R:G -> '0'891R:G: outward } 0 9 {'0'891R:G -> '0'771R:G: outward } 0 10 {'0'772R:G -> '0'773R:A: adjacent_5p upward } 0 11 {'0'773R:A -> '0'772R:G: adjacent_3p downward } 0 12 {'0'772R:G -> '0'889R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'889R:C -> '0'772R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'773R:A -> '0'888R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'888R:U -> '0'773R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'888R:U -> '0'889R:C: adjacent_5p upward } 0 17 {'0'889R:C -> '0'888R:U: adjacent_3p downward } 0 18 {'0'889R:C -> '0'890R:C: adjacent_5p upward } 0 19 {'0'890R:C -> '0'889R:C: adjacent_3p downward } 0 20 {'0'890R:C -> '0'891R:G: adjacent_5p upward } 0 21 {'0'891R:G -> '0'890R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'771R:G 0 1 '0'772R:G 0 2 '0'773R:A 0 3 '0'774R:C 0 4 '0'887R:G 0 5 '0'888R:U 0 6 '0'889R:C 0 7 '0'890R:C 0 [Edges] 0 {'0'771R:G -> '0'772R:G: adjacent_5p upward } 0 1 {'0'772R:G -> '0'771R:G: adjacent_3p downward } 0 2 {'0'771R:G -> '0'890R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'890R:C -> '0'771R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'772R:G -> '0'773R:A: adjacent_5p upward } 0 5 {'0'773R:A -> '0'772R:G: adjacent_3p downward } 0 6 {'0'772R:G -> '0'889R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'889R:C -> '0'772R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'773R:A -> '0'774R:C: adjacent_5p upward } 0 9 {'0'774R:C -> '0'773R:A: adjacent_3p downward } 0 10 {'0'773R:A -> '0'888R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'888R:U -> '0'773R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'774R:C -> '0'887R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'887R:G -> '0'774R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'887R:G -> '0'888R:U: adjacent_5p upward } 0 15 {'0'888R:U -> '0'887R:G: adjacent_3p downward } 0 16 {'0'888R:U -> '0'889R:C: adjacent_5p upward } 0 17 {'0'889R:C -> '0'888R:U: adjacent_3p downward } 0 18 {'0'889R:C -> '0'890R:C: adjacent_5p upward } 0 19 {'0'890R:C -> '0'889R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'780R:A 0 1 '0'781R:C 0 2 '0'782R:G 0 3 '0'783R:C 0 4 '0'863R:G 0 5 '0'864R:U 0 6 '0'865R:G 0 7 '0'866R:U 0 [Edges] 0 {'0'780R:A -> '0'781R:C: adjacent_5p upward } 0 1 {'0'781R:C -> '0'780R:A: adjacent_3p downward } 0 2 {'0'780R:A -> '0'866R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'866R:U -> '0'780R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'781R:C -> '0'782R:G: adjacent_5p upward } 0 5 {'0'782R:G -> '0'781R:C: adjacent_3p downward } 0 6 {'0'781R:C -> '0'865R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'865R:G -> '0'781R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'782R:G -> '0'783R:C: adjacent_5p upward } 0 9 {'0'783R:C -> '0'782R:G: adjacent_3p downward } 0 10 {'0'782R:G -> '0'864R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'864R:U -> '0'782R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'782R:G -> '0'865R:G: outward } 0 13 {'0'865R:G -> '0'782R:G: outward } 0 14 {'0'783R:C -> '0'863R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'863R:G -> '0'783R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'863R:G -> '0'864R:U: adjacent_5p upward } 0 17 {'0'864R:U -> '0'863R:G: adjacent_3p downward } 0 18 {'0'864R:U -> '0'865R:G: adjacent_5p } 0 19 {'0'865R:G -> '0'864R:U: adjacent_3p } 0 20 {'0'865R:G -> '0'866R:U: adjacent_5p upward } 0 21 {'0'866R:U -> '0'865R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'781R:C 0 1 '0'782R:G 0 2 '0'783R:C 0 3 '0'784R:A 0 4 '0'862R:U 0 5 '0'863R:G 0 6 '0'864R:U 0 7 '0'865R:G 0 [Edges] 0 {'0'781R:C -> '0'782R:G: adjacent_5p upward } 0 1 {'0'782R:G -> '0'781R:C: adjacent_3p downward } 0 2 {'0'781R:C -> '0'865R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'865R:G -> '0'781R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'782R:G -> '0'783R:C: adjacent_5p upward } 0 5 {'0'783R:C -> '0'782R:G: adjacent_3p downward } 0 6 {'0'782R:G -> '0'864R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'864R:U -> '0'782R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'782R:G -> '0'865R:G: outward } 0 9 {'0'865R:G -> '0'782R:G: outward } 0 10 {'0'783R:C -> '0'784R:A: adjacent_5p } 0 11 {'0'784R:A -> '0'783R:C: adjacent_3p } 0 12 {'0'783R:C -> '0'863R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'863R:G -> '0'783R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'784R:A -> '0'862R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'862R:U -> '0'784R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'784R:A -> '0'863R:G: outward } 0 17 {'0'863R:G -> '0'784R:A: outward } 0 18 {'0'862R:U -> '0'863R:G: adjacent_5p upward } 0 19 {'0'863R:G -> '0'862R:U: adjacent_3p downward } 0 20 {'0'863R:G -> '0'864R:U: adjacent_5p upward } 0 21 {'0'864R:U -> '0'863R:G: adjacent_3p downward } 0 22 {'0'864R:U -> '0'865R:G: adjacent_5p } 0 23 {'0'865R:G -> '0'864R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'782R:G 0 1 '0'783R:C 0 2 '0'784R:A 0 3 '0'785R:U 0 4 '0'861R:A 0 5 '0'862R:U 0 6 '0'863R:G 0 7 '0'864R:U 0 [Edges] 0 {'0'782R:G -> '0'783R:C: adjacent_5p upward } 0 1 {'0'783R:C -> '0'782R:G: adjacent_3p downward } 0 2 {'0'782R:G -> '0'864R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'864R:U -> '0'782R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'783R:C -> '0'784R:A: adjacent_5p } 0 5 {'0'784R:A -> '0'783R:C: adjacent_3p } 0 6 {'0'783R:C -> '0'863R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'863R:G -> '0'783R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'784R:A -> '0'785R:U: adjacent_5p upward } 0 9 {'0'785R:U -> '0'784R:A: adjacent_3p downward } 0 10 {'0'784R:A -> '0'862R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'862R:U -> '0'784R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'784R:A -> '0'863R:G: outward } 0 13 {'0'863R:G -> '0'784R:A: outward } 0 14 {'0'785R:U -> '0'861R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'861R:A -> '0'785R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'861R:A -> '0'862R:U: adjacent_5p upward } 0 17 {'0'862R:U -> '0'861R:A: adjacent_3p downward } 0 18 {'0'862R:U -> '0'863R:G: adjacent_5p upward } 0 19 {'0'863R:G -> '0'862R:U: adjacent_3p downward } 0 20 {'0'863R:G -> '0'864R:U: adjacent_5p upward } 0 21 {'0'864R:U -> '0'863R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'783R:C 0 1 '0'784R:A 0 2 '0'785R:U 0 3 '0'786R:G 0 4 '0'860R:U 0 5 '0'861R:A 0 6 '0'862R:U 0 7 '0'863R:G 0 [Edges] 0 {'0'783R:C -> '0'784R:A: adjacent_5p } 0 1 {'0'784R:A -> '0'783R:C: adjacent_3p } 0 2 {'0'783R:C -> '0'863R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'863R:G -> '0'783R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'784R:A -> '0'785R:U: adjacent_5p upward } 0 5 {'0'785R:U -> '0'784R:A: adjacent_3p downward } 0 6 {'0'784R:A -> '0'862R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'862R:U -> '0'784R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'784R:A -> '0'863R:G: outward } 0 9 {'0'863R:G -> '0'784R:A: outward } 0 10 {'0'785R:U -> '0'786R:G: adjacent_5p } 0 11 {'0'786R:G -> '0'785R:U: adjacent_3p } 0 12 {'0'785R:U -> '0'861R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'861R:A -> '0'785R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'786R:G -> '0'860R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {'0'860R:U -> '0'786R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {'0'786R:G -> '0'861R:A: outward } 0 17 {'0'861R:A -> '0'786R:G: outward } 0 18 {'0'860R:U -> '0'861R:A: adjacent_5p } 0 19 {'0'861R:A -> '0'860R:U: adjacent_3p } 0 20 {'0'861R:A -> '0'862R:U: adjacent_5p upward } 0 21 {'0'862R:U -> '0'861R:A: adjacent_3p downward } 0 22 {'0'862R:U -> '0'863R:G: adjacent_5p upward } 0 23 {'0'863R:G -> '0'862R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'784R:A 0 1 '0'785R:U 0 2 '0'786R:G 0 3 '0'787R:G 0 4 '0'859R:C 0 5 '0'860R:U 0 6 '0'861R:A 0 7 '0'862R:U 0 [Edges] 0 {'0'784R:A -> '0'785R:U: adjacent_5p upward } 0 1 {'0'785R:U -> '0'784R:A: adjacent_3p downward } 0 2 {'0'784R:A -> '0'862R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'862R:U -> '0'784R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'785R:U -> '0'786R:G: adjacent_5p } 0 5 {'0'786R:G -> '0'785R:U: adjacent_3p } 0 6 {'0'785R:U -> '0'861R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'861R:A -> '0'785R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'786R:G -> '0'787R:G: adjacent_5p upward } 0 9 {'0'787R:G -> '0'786R:G: adjacent_3p downward } 0 10 {'0'786R:G -> '0'860R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'860R:U -> '0'786R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'786R:G -> '0'861R:A: outward } 0 13 {'0'861R:A -> '0'786R:G: outward } 0 14 {'0'787R:G -> '0'859R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'859R:C -> '0'787R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'859R:C -> '0'860R:U: adjacent_5p upward } 0 17 {'0'860R:U -> '0'859R:C: adjacent_3p downward } 0 18 {'0'860R:U -> '0'861R:A: adjacent_5p } 0 19 {'0'861R:A -> '0'860R:U: adjacent_3p } 0 20 {'0'861R:A -> '0'862R:U: adjacent_5p upward } 0 21 {'0'862R:U -> '0'861R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'785R:U 0 1 '0'786R:G 0 2 '0'787R:G 0 3 '0'788R:A 0 4 '0'858R:U 0 5 '0'859R:C 0 6 '0'860R:U 0 7 '0'861R:A 0 [Edges] 0 {'0'785R:U -> '0'786R:G: adjacent_5p } 0 1 {'0'786R:G -> '0'785R:U: adjacent_3p } 0 2 {'0'785R:U -> '0'861R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'861R:A -> '0'785R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'786R:G -> '0'787R:G: adjacent_5p upward } 0 5 {'0'787R:G -> '0'786R:G: adjacent_3p downward } 0 6 {'0'786R:G -> '0'860R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'860R:U -> '0'786R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'786R:G -> '0'861R:A: outward } 0 9 {'0'861R:A -> '0'786R:G: outward } 0 10 {'0'787R:G -> '0'788R:A: adjacent_5p upward } 0 11 {'0'788R:A -> '0'787R:G: adjacent_3p downward } 0 12 {'0'787R:G -> '0'859R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'859R:C -> '0'787R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'788R:A -> '0'858R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'858R:U -> '0'788R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'858R:U -> '0'859R:C: adjacent_5p } 0 17 {'0'859R:C -> '0'858R:U: adjacent_3p } 0 18 {'0'859R:C -> '0'860R:U: adjacent_5p upward } 0 19 {'0'860R:U -> '0'859R:C: adjacent_3p downward } 0 20 {'0'860R:U -> '0'861R:A: adjacent_5p } 0 21 {'0'861R:A -> '0'860R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'790R:A 0 1 '0'791R:A 0 2 '0'792R:G 0 3 '0'793R:A 0 4 '0'821R:U 0 5 '0'822R:C 0 6 '0'823R:U 0 7 '0'824R:G 0 [Edges] 0 {'0'790R:A -> '0'791R:A: adjacent_5p upward } 0 1 {'0'791R:A -> '0'790R:A: adjacent_3p downward } 0 2 {'0'790R:A -> '0'824R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'824R:G -> '0'790R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'791R:A -> '0'792R:G: adjacent_5p upward } 0 5 {'0'792R:G -> '0'791R:A: adjacent_3p downward } 0 6 {'0'791R:A -> '0'823R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'823R:U -> '0'791R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'792R:G -> '0'793R:A: adjacent_5p upward } 0 9 {'0'793R:A -> '0'792R:G: adjacent_3p downward } 0 10 {'0'792R:G -> '0'822R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'822R:C -> '0'792R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'793R:A -> '0'821R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'821R:U -> '0'793R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'793R:A -> '0'822R:C: outward } 0 15 {'0'822R:C -> '0'793R:A: outward } 0 16 {'0'821R:U -> '0'822R:C: adjacent_5p } 0 17 {'0'822R:C -> '0'821R:U: adjacent_3p } 0 18 {'0'822R:C -> '0'823R:U: adjacent_5p } 0 19 {'0'823R:U -> '0'822R:C: adjacent_3p } 0 20 {'0'823R:U -> '0'824R:G: adjacent_5p upward } 0 21 {'0'824R:G -> '0'823R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'794R:U 0 1 '0'795R:G 0 2 '0'796R:A 0 3 '0'797R:A 0 4 '0'816R:G 0 5 '0'817R:G 0 6 '0'818R:A 0 7 '0'819R:A 0 [Edges] 0 {'0'794R:U -> '0'795R:G: adjacent_5p upward } 0 1 {'0'795R:G -> '0'794R:U: adjacent_3p downward } 0 2 {'0'794R:U -> '0'819R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'819R:A -> '0'794R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'795R:G -> '0'796R:A: adjacent_5p } 0 5 {'0'796R:A -> '0'795R:G: adjacent_3p } 0 6 {'0'795R:G -> '0'817R:G: inward } 0 7 {'0'817R:G -> '0'795R:G: inward } 0 8 {'0'795R:G -> '0'818R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {'0'818R:A -> '0'795R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {'0'796R:A -> '0'797R:A: adjacent_5p upward } 0 11 {'0'797R:A -> '0'796R:A: adjacent_3p downward } 0 12 {'0'796R:A -> '0'817R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {'0'817R:G -> '0'796R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {'0'796R:A -> '0'818R:A: outward } 0 15 {'0'818R:A -> '0'796R:A: outward } 0 16 {'0'797R:A -> '0'816R:G: pairing antiparallel trans XI Hh/Ss } 0 17 {'0'816R:G -> '0'797R:A: pairing antiparallel trans XI Ss/Hh } 0 18 {'0'816R:G -> '0'817R:G: adjacent_5p upward } 0 19 {'0'817R:G -> '0'816R:G: adjacent_3p downward } 0 20 {'0'817R:G -> '0'818R:A: adjacent_5p } 0 21 {'0'818R:A -> '0'817R:G: adjacent_3p } 0 22 {'0'818R:A -> '0'819R:A: adjacent_5p upward } 0 23 {'0'819R:A -> '0'818R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . 7 13 . 19 . 20 . 6 . 9 15 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 '0'795R:G 0 1 '0'796R:A 0 2 '0'797R:A 0 3 '0'798R:G 0 4 '0'815R:U 0 5 '0'816R:G 0 6 '0'817R:G 0 7 '0'818R:A 0 [Edges] 0 {'0'795R:G -> '0'796R:A: adjacent_5p } 0 1 {'0'796R:A -> '0'795R:G: adjacent_3p } 0 2 {'0'795R:G -> '0'817R:G: inward } 0 3 {'0'817R:G -> '0'795R:G: inward } 0 4 {'0'795R:G -> '0'818R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {'0'818R:A -> '0'795R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {'0'796R:A -> '0'797R:A: adjacent_5p upward } 0 7 {'0'797R:A -> '0'796R:A: adjacent_3p downward } 0 8 {'0'796R:A -> '0'817R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {'0'817R:G -> '0'796R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {'0'796R:A -> '0'818R:A: outward } 0 11 {'0'818R:A -> '0'796R:A: outward } 0 12 {'0'797R:A -> '0'798R:G: adjacent_5p upward } 0 13 {'0'798R:G -> '0'797R:A: adjacent_3p downward } 0 14 {'0'797R:A -> '0'816R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {'0'816R:G -> '0'797R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {'0'798R:G -> '0'815R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 17 {'0'815R:U -> '0'798R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 18 {'0'815R:U -> '0'816R:G: adjacent_5p upward } 0 19 {'0'816R:G -> '0'815R:U: adjacent_3p downward } 0 20 {'0'816R:G -> '0'817R:G: adjacent_5p upward } 0 21 {'0'817R:G -> '0'816R:G: adjacent_3p downward } 0 22 {'0'817R:G -> '0'818R:A: adjacent_5p } 0 23 {'0'818R:A -> '0'817R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 18 . . 5 . . 15 . 19 . 20 . 6 3 9 . . . 21 . 22 7 5 11 . . . . 23 . [GraphModel] [Vertices] 0 '0'796R:A 0 1 '0'797R:A 0 2 '0'798R:G 0 3 '0'799R:C 0 4 '0'814R:G 0 5 '0'815R:U 0 6 '0'816R:G 0 7 '0'817R:G 0 [Edges] 0 {'0'796R:A -> '0'797R:A: adjacent_5p upward } 0 1 {'0'797R:A -> '0'796R:A: adjacent_3p downward } 0 2 {'0'796R:A -> '0'817R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'817R:G -> '0'796R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'797R:A -> '0'798R:G: adjacent_5p upward } 0 5 {'0'798R:G -> '0'797R:A: adjacent_3p downward } 0 6 {'0'797R:A -> '0'816R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {'0'816R:G -> '0'797R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {'0'798R:G -> '0'799R:C: adjacent_5p upward } 0 9 {'0'799R:C -> '0'798R:G: adjacent_3p downward } 0 10 {'0'798R:G -> '0'815R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'815R:U -> '0'798R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'799R:C -> '0'814R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'814R:G -> '0'799R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'814R:G -> '0'815R:U: adjacent_5p upward } 0 15 {'0'815R:U -> '0'814R:G: adjacent_3p downward } 0 16 {'0'815R:U -> '0'816R:G: adjacent_5p upward } 0 17 {'0'816R:G -> '0'815R:U: adjacent_3p downward } 0 18 {'0'816R:G -> '0'817R:G: adjacent_5p upward } 0 19 {'0'817R:G -> '0'816R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'797R:A 0 1 '0'798R:G 0 2 '0'799R:C 0 3 '0'800R:G 0 4 '0'813R:C 0 5 '0'814R:G 0 6 '0'815R:U 0 7 '0'816R:G 0 [Edges] 0 {'0'797R:A -> '0'798R:G: adjacent_5p upward } 0 1 {'0'798R:G -> '0'797R:A: adjacent_3p downward } 0 2 {'0'797R:A -> '0'816R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'816R:G -> '0'797R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'798R:G -> '0'799R:C: adjacent_5p upward } 0 5 {'0'799R:C -> '0'798R:G: adjacent_3p downward } 0 6 {'0'798R:G -> '0'815R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'815R:U -> '0'798R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'799R:C -> '0'800R:G: adjacent_5p upward } 0 9 {'0'800R:G -> '0'799R:C: adjacent_3p downward } 0 10 {'0'799R:C -> '0'814R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'814R:G -> '0'799R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'800R:G -> '0'813R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'813R:C -> '0'800R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'800R:G -> '0'814R:G: outward } 0 15 {'0'814R:G -> '0'800R:G: outward } 0 16 {'0'813R:C -> '0'814R:G: adjacent_5p upward } 0 17 {'0'814R:G -> '0'813R:C: adjacent_3p downward } 0 18 {'0'814R:G -> '0'815R:U: adjacent_5p upward } 0 19 {'0'815R:U -> '0'814R:G: adjacent_3p downward } 0 20 {'0'815R:U -> '0'816R:G: adjacent_5p upward } 0 21 {'0'816R:G -> '0'815R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'798R:G 0 1 '0'799R:C 0 2 '0'800R:G 0 3 '0'801R:U 0 4 '0'812R:A 0 5 '0'813R:C 0 6 '0'814R:G 0 7 '0'815R:U 0 [Edges] 0 {'0'798R:G -> '0'799R:C: adjacent_5p upward } 0 1 {'0'799R:C -> '0'798R:G: adjacent_3p downward } 0 2 {'0'798R:G -> '0'815R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'815R:U -> '0'798R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'799R:C -> '0'800R:G: adjacent_5p upward } 0 5 {'0'800R:G -> '0'799R:C: adjacent_3p downward } 0 6 {'0'799R:C -> '0'814R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'814R:G -> '0'799R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'800R:G -> '0'801R:U: adjacent_5p upward } 0 9 {'0'801R:U -> '0'800R:G: adjacent_3p downward } 0 10 {'0'800R:G -> '0'813R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'813R:C -> '0'800R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'800R:G -> '0'814R:G: outward } 0 13 {'0'814R:G -> '0'800R:G: outward } 0 14 {'0'801R:U -> '0'812R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'812R:A -> '0'801R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'812R:A -> '0'813R:C: adjacent_5p upward } 0 17 {'0'813R:C -> '0'812R:A: adjacent_3p downward } 0 18 {'0'813R:C -> '0'814R:G: adjacent_5p upward } 0 19 {'0'814R:G -> '0'813R:C: adjacent_3p downward } 0 20 {'0'814R:G -> '0'815R:U: adjacent_5p upward } 0 21 {'0'815R:U -> '0'814R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'799R:C 0 1 '0'800R:G 0 2 '0'801R:U 0 3 '0'802R:G 0 4 '0'811R:C 0 5 '0'812R:A 0 6 '0'813R:C 0 7 '0'814R:G 0 [Edges] 0 {'0'799R:C -> '0'800R:G: adjacent_5p upward } 0 1 {'0'800R:G -> '0'799R:C: adjacent_3p downward } 0 2 {'0'799R:C -> '0'814R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'814R:G -> '0'799R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'800R:G -> '0'801R:U: adjacent_5p upward } 0 5 {'0'801R:U -> '0'800R:G: adjacent_3p downward } 0 6 {'0'800R:G -> '0'813R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'813R:C -> '0'800R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'800R:G -> '0'814R:G: outward } 0 9 {'0'814R:G -> '0'800R:G: outward } 0 10 {'0'801R:U -> '0'802R:G: adjacent_5p upward } 0 11 {'0'802R:G -> '0'801R:U: adjacent_3p downward } 0 12 {'0'801R:U -> '0'812R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'812R:A -> '0'801R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'802R:G -> '0'811R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'811R:C -> '0'802R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'802R:G -> '0'812R:A: outward } 0 17 {'0'812R:A -> '0'802R:G: outward } 0 18 {'0'811R:C -> '0'812R:A: adjacent_5p upward } 0 19 {'0'812R:A -> '0'811R:C: adjacent_3p downward } 0 20 {'0'812R:A -> '0'813R:C: adjacent_5p upward } 0 21 {'0'813R:C -> '0'812R:A: adjacent_3p downward } 0 22 {'0'813R:C -> '0'814R:G: adjacent_5p upward } 0 23 {'0'814R:G -> '0'813R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'800R:G 0 1 '0'801R:U 0 2 '0'802R:G 0 3 '0'803R:C 0 4 '0'810R:G 0 5 '0'811R:C 0 6 '0'812R:A 0 7 '0'813R:C 0 [Edges] 0 {'0'800R:G -> '0'801R:U: adjacent_5p upward } 0 1 {'0'801R:U -> '0'800R:G: adjacent_3p downward } 0 2 {'0'800R:G -> '0'813R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'813R:C -> '0'800R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'801R:U -> '0'802R:G: adjacent_5p upward } 0 5 {'0'802R:G -> '0'801R:U: adjacent_3p downward } 0 6 {'0'801R:U -> '0'812R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'812R:A -> '0'801R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'802R:G -> '0'803R:C: adjacent_5p upward } 0 9 {'0'803R:C -> '0'802R:G: adjacent_3p downward } 0 10 {'0'802R:G -> '0'811R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'811R:C -> '0'802R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'802R:G -> '0'812R:A: outward } 0 13 {'0'812R:A -> '0'802R:G: outward } 0 14 {'0'803R:C -> '0'810R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'810R:G -> '0'803R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'810R:G -> '0'811R:C: adjacent_5p upward } 0 17 {'0'811R:C -> '0'810R:G: adjacent_3p downward } 0 18 {'0'811R:C -> '0'812R:A: adjacent_5p upward } 0 19 {'0'812R:A -> '0'811R:C: adjacent_3p downward } 0 20 {'0'812R:A -> '0'813R:C: adjacent_5p upward } 0 21 {'0'813R:C -> '0'812R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'801R:U 0 1 '0'802R:G 0 2 '0'803R:C 0 3 '0'804R:C 0 4 '0'809R:G 0 5 '0'810R:G 0 6 '0'811R:C 0 7 '0'812R:A 0 [Edges] 0 {'0'801R:U -> '0'802R:G: adjacent_5p upward } 0 1 {'0'802R:G -> '0'801R:U: adjacent_3p downward } 0 2 {'0'801R:U -> '0'812R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'812R:A -> '0'801R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'802R:G -> '0'803R:C: adjacent_5p upward } 0 5 {'0'803R:C -> '0'802R:G: adjacent_3p downward } 0 6 {'0'802R:G -> '0'811R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'811R:C -> '0'802R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'802R:G -> '0'812R:A: outward } 0 9 {'0'812R:A -> '0'802R:G: outward } 0 10 {'0'803R:C -> '0'804R:C: adjacent_5p upward } 0 11 {'0'804R:C -> '0'803R:C: adjacent_3p downward } 0 12 {'0'803R:C -> '0'810R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'810R:G -> '0'803R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'804R:C -> '0'809R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'809R:G -> '0'804R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'809R:G -> '0'810R:G: adjacent_5p upward } 0 17 {'0'810R:G -> '0'809R:G: adjacent_3p downward } 0 18 {'0'810R:G -> '0'811R:C: adjacent_5p upward } 0 19 {'0'811R:C -> '0'810R:G: adjacent_3p downward } 0 20 {'0'811R:C -> '0'812R:A: adjacent_5p upward } 0 21 {'0'812R:A -> '0'811R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'802R:G 0 1 '0'803R:C 0 2 '0'804R:C 0 3 '0'805R:G 0 4 '0'808R:A 0 5 '0'809R:G 0 6 '0'810R:G 0 7 '0'811R:C 0 [Edges] 0 {'0'802R:G -> '0'803R:C: adjacent_5p upward } 0 1 {'0'803R:C -> '0'802R:G: adjacent_3p downward } 0 2 {'0'802R:G -> '0'811R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'811R:C -> '0'802R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'803R:C -> '0'804R:C: adjacent_5p upward } 0 5 {'0'804R:C -> '0'803R:C: adjacent_3p downward } 0 6 {'0'803R:C -> '0'810R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'810R:G -> '0'803R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'804R:C -> '0'805R:G: adjacent_5p upward } 0 9 {'0'805R:G -> '0'804R:C: adjacent_3p downward } 0 10 {'0'804R:C -> '0'809R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'809R:G -> '0'804R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'805R:G -> '0'808R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {'0'808R:A -> '0'805R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {'0'805R:G -> '0'809R:G: outward } 0 15 {'0'809R:G -> '0'805R:G: outward } 0 16 {'0'808R:A -> '0'809R:G: adjacent_5p } 0 17 {'0'809R:G -> '0'808R:A: adjacent_3p } 0 18 {'0'809R:G -> '0'810R:G: adjacent_5p upward } 0 19 {'0'810R:G -> '0'809R:G: adjacent_3p downward } 0 20 {'0'810R:G -> '0'811R:C: adjacent_5p upward } 0 21 {'0'811R:C -> '0'810R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'827R:A 0 1 '0'828R:G 0 2 '0'829R:A 0 3 '0'830R:G 0 4 '0'851R:C 0 5 '0'852R:U 0 6 '0'853R:C 0 7 '0'854R:G 0 [Edges] 0 {'0'827R:A -> '0'828R:G: adjacent_5p upward } 0 1 {'0'828R:G -> '0'827R:A: adjacent_3p downward } 0 2 {'0'827R:A -> '0'854R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'854R:G -> '0'827R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'828R:G -> '0'829R:A: adjacent_5p upward } 0 5 {'0'829R:A -> '0'828R:G: adjacent_3p downward } 0 6 {'0'828R:G -> '0'853R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'853R:C -> '0'828R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'829R:A -> '0'830R:G: adjacent_5p upward } 0 9 {'0'830R:G -> '0'829R:A: adjacent_3p downward } 0 10 {'0'829R:A -> '0'852R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'852R:U -> '0'829R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'830R:G -> '0'851R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'851R:C -> '0'830R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'830R:G -> '0'852R:U: outward } 0 15 {'0'852R:U -> '0'830R:G: outward } 0 16 {'0'851R:C -> '0'852R:U: adjacent_5p } 0 17 {'0'852R:U -> '0'851R:C: adjacent_3p } 0 18 {'0'852R:U -> '0'853R:C: adjacent_5p } 0 19 {'0'853R:C -> '0'852R:U: adjacent_3p } 0 20 {'0'853R:C -> '0'854R:G: adjacent_5p upward } 0 21 {'0'854R:G -> '0'853R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'905R:C 0 1 '0'906R:C 0 2 '0'907R:A 0 3 '0'908R:A 0 4 '0'1297R:U 0 5 '0'1298R:U 0 6 '0'1299R:G 0 7 '0'1300R:G 0 [Edges] 0 {'0'905R:C -> '0'906R:C: adjacent_5p } 0 1 {'0'906R:C -> '0'905R:C: adjacent_3p } 0 2 {'0'905R:C -> '0'1300R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1300R:G -> '0'905R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'906R:C -> '0'907R:A: adjacent_5p upward } 0 5 {'0'907R:A -> '0'906R:C: adjacent_3p downward } 0 6 {'0'906R:C -> '0'1299R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1299R:G -> '0'906R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'906R:C -> '0'1300R:G: outward } 0 9 {'0'1300R:G -> '0'906R:C: outward } 0 10 {'0'907R:A -> '0'908R:A: adjacent_5p upward } 0 11 {'0'908R:A -> '0'907R:A: adjacent_3p downward } 0 12 {'0'907R:A -> '0'1298R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1298R:U -> '0'907R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'907R:A -> '0'1299R:G: outward } 0 15 {'0'1299R:G -> '0'907R:A: outward } 0 16 {'0'908R:A -> '0'1297R:U: pairing antiparallel cis XX Ww/Ww } 0 17 {'0'1297R:U -> '0'908R:A: pairing antiparallel cis XX Ww/Ww } 0 18 {'0'1297R:U -> '0'1298R:U: adjacent_5p upward } 0 19 {'0'1298R:U -> '0'1297R:U: adjacent_3p downward } 0 20 {'0'1298R:U -> '0'1299R:G: adjacent_5p } 0 21 {'0'1299R:G -> '0'1298R:U: adjacent_3p } 0 22 {'0'1299R:G -> '0'1300R:G: adjacent_5p upward } 0 23 {'0'1300R:G -> '0'1299R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'906R:C 0 1 '0'907R:A 0 2 '0'908R:A 0 3 '0'909R:U 0 4 '0'1296R:A 0 5 '0'1297R:U 0 6 '0'1298R:U 0 7 '0'1299R:G 0 [Edges] 0 {'0'906R:C -> '0'907R:A: adjacent_5p upward } 0 1 {'0'907R:A -> '0'906R:C: adjacent_3p downward } 0 2 {'0'906R:C -> '0'1299R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1299R:G -> '0'906R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'907R:A -> '0'908R:A: adjacent_5p upward } 0 5 {'0'908R:A -> '0'907R:A: adjacent_3p downward } 0 6 {'0'907R:A -> '0'1298R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1298R:U -> '0'907R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'907R:A -> '0'1299R:G: outward } 0 9 {'0'1299R:G -> '0'907R:A: outward } 0 10 {'0'908R:A -> '0'909R:U: adjacent_5p upward } 0 11 {'0'909R:U -> '0'908R:A: adjacent_3p downward } 0 12 {'0'908R:A -> '0'1297R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1297R:U -> '0'908R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'909R:U -> '0'1296R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1296R:A -> '0'909R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1296R:A -> '0'1297R:U: adjacent_5p upward } 0 17 {'0'1297R:U -> '0'1296R:A: adjacent_3p downward } 0 18 {'0'1297R:U -> '0'1298R:U: adjacent_5p upward } 0 19 {'0'1298R:U -> '0'1297R:U: adjacent_3p downward } 0 20 {'0'1298R:U -> '0'1299R:G: adjacent_5p } 0 21 {'0'1299R:G -> '0'1298R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'907R:A 0 1 '0'908R:A 0 2 '0'909R:U 0 3 '0'910R:C 0 4 '0'1295R:G 0 5 '0'1296R:A 0 6 '0'1297R:U 0 7 '0'1298R:U 0 [Edges] 0 {'0'907R:A -> '0'908R:A: adjacent_5p upward } 0 1 {'0'908R:A -> '0'907R:A: adjacent_3p downward } 0 2 {'0'907R:A -> '0'1298R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1298R:U -> '0'907R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'908R:A -> '0'909R:U: adjacent_5p upward } 0 5 {'0'909R:U -> '0'908R:A: adjacent_3p downward } 0 6 {'0'908R:A -> '0'1297R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1297R:U -> '0'908R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'909R:U -> '0'910R:C: adjacent_5p upward } 0 9 {'0'910R:C -> '0'909R:U: adjacent_3p downward } 0 10 {'0'909R:U -> '0'1296R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1296R:A -> '0'909R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'910R:C -> '0'1295R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1295R:G -> '0'910R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1295R:G -> '0'1296R:A: adjacent_5p upward } 0 15 {'0'1296R:A -> '0'1295R:G: adjacent_3p downward } 0 16 {'0'1296R:A -> '0'1297R:U: adjacent_5p upward } 0 17 {'0'1297R:U -> '0'1296R:A: adjacent_3p downward } 0 18 {'0'1297R:U -> '0'1298R:U: adjacent_5p upward } 0 19 {'0'1298R:U -> '0'1297R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'908R:A 0 1 '0'909R:U 0 2 '0'910R:C 0 3 '0'911R:G 0 4 '0'1294R:A 0 5 '0'1295R:G 0 6 '0'1296R:A 0 7 '0'1297R:U 0 [Edges] 0 {'0'908R:A -> '0'909R:U: adjacent_5p upward } 0 1 {'0'909R:U -> '0'908R:A: adjacent_3p downward } 0 2 {'0'908R:A -> '0'1297R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1297R:U -> '0'908R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'909R:U -> '0'910R:C: adjacent_5p upward } 0 5 {'0'910R:C -> '0'909R:U: adjacent_3p downward } 0 6 {'0'909R:U -> '0'1296R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1296R:A -> '0'909R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'910R:C -> '0'911R:G: adjacent_5p upward } 0 9 {'0'911R:G -> '0'910R:C: adjacent_3p downward } 0 10 {'0'910R:C -> '0'1295R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1295R:G -> '0'910R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'911R:G -> '0'1294R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {'0'1294R:A -> '0'911R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {'0'1294R:A -> '0'1295R:G: adjacent_5p upward } 0 15 {'0'1295R:G -> '0'1294R:A: adjacent_3p downward } 0 16 {'0'1295R:G -> '0'1296R:A: adjacent_5p upward } 0 17 {'0'1296R:A -> '0'1295R:G: adjacent_3p downward } 0 18 {'0'1296R:A -> '0'1297R:U: adjacent_5p upward } 0 19 {'0'1297R:U -> '0'1296R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'909R:U 0 1 '0'910R:C 0 2 '0'911R:G 0 3 '0'912R:A 0 4 '0'1293R:U 0 5 '0'1294R:A 0 6 '0'1295R:G 0 7 '0'1296R:A 0 [Edges] 0 {'0'909R:U -> '0'910R:C: adjacent_5p upward } 0 1 {'0'910R:C -> '0'909R:U: adjacent_3p downward } 0 2 {'0'909R:U -> '0'1296R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1296R:A -> '0'909R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'910R:C -> '0'911R:G: adjacent_5p upward } 0 5 {'0'911R:G -> '0'910R:C: adjacent_3p downward } 0 6 {'0'910R:C -> '0'1295R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1295R:G -> '0'910R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'911R:G -> '0'912R:A: adjacent_5p } 0 9 {'0'912R:A -> '0'911R:G: adjacent_3p } 0 10 {'0'911R:G -> '0'1294R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {'0'1294R:A -> '0'911R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {'0'912R:A -> '0'1293R:U: pairing antiparallel trans XXIV Hh/Ww } 0 13 {'0'1293R:U -> '0'912R:A: pairing antiparallel trans XXIV Ww/Hh } 0 14 {'0'912R:A -> '0'1294R:A: outward } 0 15 {'0'1294R:A -> '0'912R:A: outward } 0 16 {'0'1293R:U -> '0'1294R:A: adjacent_5p } 0 17 {'0'1294R:A -> '0'1293R:U: adjacent_3p } 0 18 {'0'1294R:A -> '0'1295R:G: adjacent_5p upward } 0 19 {'0'1295R:G -> '0'1294R:A: adjacent_3p downward } 0 20 {'0'1295R:G -> '0'1296R:A: adjacent_5p upward } 0 21 {'0'1296R:A -> '0'1295R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'915R:C 0 1 '0'916R:A 0 2 '0'917R:U 0 3 '0'918R:G 0 4 '0'925R:C 0 5 '0'926R:A 0 6 '0'927R:U 0 7 '0'928R:G 0 [Edges] 0 {'0'915R:C -> '0'916R:A: adjacent_5p } 0 1 {'0'916R:A -> '0'915R:C: adjacent_3p } 0 2 {'0'915R:C -> '0'928R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'928R:G -> '0'915R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'916R:A -> '0'917R:U: adjacent_5p upward } 0 5 {'0'917R:U -> '0'916R:A: adjacent_3p downward } 0 6 {'0'916R:A -> '0'927R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'927R:U -> '0'916R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'916R:A -> '0'928R:G: outward } 0 9 {'0'928R:G -> '0'916R:A: outward } 0 10 {'0'917R:U -> '0'918R:G: adjacent_5p upward } 0 11 {'0'918R:G -> '0'917R:U: adjacent_3p downward } 0 12 {'0'917R:U -> '0'926R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'926R:A -> '0'917R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'918R:G -> '0'925R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'925R:C -> '0'918R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'918R:G -> '0'926R:A: outward } 0 17 {'0'926R:A -> '0'918R:G: outward } 0 18 {'0'925R:C -> '0'926R:A: adjacent_5p upward } 0 19 {'0'926R:A -> '0'925R:C: adjacent_3p downward } 0 20 {'0'926R:A -> '0'927R:U: adjacent_5p upward } 0 21 {'0'927R:U -> '0'926R:A: adjacent_3p downward } 0 22 {'0'927R:U -> '0'928R:G: adjacent_5p upward } 0 23 {'0'928R:G -> '0'927R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'916R:A 0 1 '0'917R:U 0 2 '0'918R:G 0 3 '0'919R:U 0 4 '0'924R:G 0 5 '0'925R:C 0 6 '0'926R:A 0 7 '0'927R:U 0 [Edges] 0 {'0'916R:A -> '0'917R:U: adjacent_5p upward } 0 1 {'0'917R:U -> '0'916R:A: adjacent_3p downward } 0 2 {'0'916R:A -> '0'927R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'927R:U -> '0'916R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'917R:U -> '0'918R:G: adjacent_5p upward } 0 5 {'0'918R:G -> '0'917R:U: adjacent_3p downward } 0 6 {'0'917R:U -> '0'926R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'926R:A -> '0'917R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'918R:G -> '0'919R:U: adjacent_5p upward } 0 9 {'0'919R:U -> '0'918R:G: adjacent_3p downward } 0 10 {'0'918R:G -> '0'925R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'925R:C -> '0'918R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'918R:G -> '0'926R:A: outward } 0 13 {'0'926R:A -> '0'918R:G: outward } 0 14 {'0'919R:U -> '0'924R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {'0'924R:G -> '0'919R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {'0'924R:G -> '0'925R:C: adjacent_5p upward } 0 17 {'0'925R:C -> '0'924R:G: adjacent_3p downward } 0 18 {'0'925R:C -> '0'926R:A: adjacent_5p upward } 0 19 {'0'926R:A -> '0'925R:C: adjacent_3p downward } 0 20 {'0'926R:A -> '0'927R:U: adjacent_5p upward } 0 21 {'0'927R:U -> '0'926R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'929R:A 0 1 '0'930R:C 0 2 '0'931R:C 0 3 '0'932R:U 0 4 '0'1038R:G 0 5 '0'1039R:G 0 6 '0'1040R:A 0 7 '0'1041R:U 0 [Edges] 0 {'0'929R:A -> '0'930R:C: adjacent_5p upward } 0 1 {'0'930R:C -> '0'929R:A: adjacent_3p downward } 0 2 {'0'929R:A -> '0'1041R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {'0'1041R:U -> '0'929R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {'0'930R:C -> '0'931R:C: adjacent_5p } 0 5 {'0'931R:C -> '0'930R:C: adjacent_3p } 0 6 {'0'930R:C -> '0'1040R:A: pairing antiparallel trans 78 Ww/Bh } 0 7 {'0'1040R:A -> '0'930R:C: pairing antiparallel trans 78 Bh/Ww } 0 8 {'0'931R:C -> '0'932R:U: adjacent_5p upward } 0 9 {'0'932R:U -> '0'931R:C: adjacent_3p downward } 0 10 {'0'931R:C -> '0'1039R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1039R:G -> '0'931R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'932R:U -> '0'1038R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {'0'1038R:G -> '0'932R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {'0'1038R:G -> '0'1039R:G: adjacent_5p upward } 0 15 {'0'1039R:G -> '0'1038R:G: adjacent_3p downward } 0 16 {'0'1039R:G -> '0'1040R:A: adjacent_5p upward } 0 17 {'0'1040R:A -> '0'1039R:G: adjacent_3p downward } 0 18 {'0'1040R:A -> '0'1041R:U: adjacent_5p upward } 0 19 {'0'1041R:U -> '0'1040R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'930R:C 0 1 '0'931R:C 0 2 '0'932R:U 0 3 '0'933R:C 0 4 '0'1037R:G 0 5 '0'1038R:G 0 6 '0'1039R:G 0 7 '0'1040R:A 0 [Edges] 0 {'0'930R:C -> '0'931R:C: adjacent_5p } 0 1 {'0'931R:C -> '0'930R:C: adjacent_3p } 0 2 {'0'930R:C -> '0'1040R:A: pairing antiparallel trans 78 Ww/Bh } 0 3 {'0'1040R:A -> '0'930R:C: pairing antiparallel trans 78 Bh/Ww } 0 4 {'0'931R:C -> '0'932R:U: adjacent_5p upward } 0 5 {'0'932R:U -> '0'931R:C: adjacent_3p downward } 0 6 {'0'931R:C -> '0'1039R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1039R:G -> '0'931R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'932R:U -> '0'933R:C: adjacent_5p } 0 9 {'0'933R:C -> '0'932R:U: adjacent_3p } 0 10 {'0'932R:U -> '0'1038R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {'0'1038R:G -> '0'932R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {'0'933R:C -> '0'1037R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1037R:G -> '0'933R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1037R:G -> '0'1038R:G: adjacent_5p upward } 0 15 {'0'1038R:G -> '0'1037R:G: adjacent_3p downward } 0 16 {'0'1038R:G -> '0'1039R:G: adjacent_5p upward } 0 17 {'0'1039R:G -> '0'1038R:G: adjacent_3p downward } 0 18 {'0'1039R:G -> '0'1040R:A: adjacent_5p upward } 0 19 {'0'1040R:A -> '0'1039R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'931R:C 0 1 '0'932R:U 0 2 '0'933R:C 0 3 '0'934R:C 0 4 '0'1036R:G 0 5 '0'1037R:G 0 6 '0'1038R:G 0 7 '0'1039R:G 0 [Edges] 0 {'0'931R:C -> '0'932R:U: adjacent_5p upward } 0 1 {'0'932R:U -> '0'931R:C: adjacent_3p downward } 0 2 {'0'931R:C -> '0'1039R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1039R:G -> '0'931R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'932R:U -> '0'933R:C: adjacent_5p } 0 5 {'0'933R:C -> '0'932R:U: adjacent_3p } 0 6 {'0'932R:U -> '0'1038R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'1038R:G -> '0'932R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'933R:C -> '0'934R:C: adjacent_5p upward } 0 9 {'0'934R:C -> '0'933R:C: adjacent_3p downward } 0 10 {'0'933R:C -> '0'1037R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1037R:G -> '0'933R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'934R:C -> '0'1036R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1036R:G -> '0'934R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1036R:G -> '0'1037R:G: adjacent_5p upward } 0 15 {'0'1037R:G -> '0'1036R:G: adjacent_3p downward } 0 16 {'0'1037R:G -> '0'1038R:G: adjacent_5p upward } 0 17 {'0'1038R:G -> '0'1037R:G: adjacent_3p downward } 0 18 {'0'1038R:G -> '0'1039R:G: adjacent_5p upward } 0 19 {'0'1039R:G -> '0'1038R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'932R:U 0 1 '0'933R:C 0 2 '0'934R:C 0 3 '0'935R:G 0 4 '0'1035R:C 0 5 '0'1036R:G 0 6 '0'1037R:G 0 7 '0'1038R:G 0 [Edges] 0 {'0'932R:U -> '0'933R:C: adjacent_5p } 0 1 {'0'933R:C -> '0'932R:U: adjacent_3p } 0 2 {'0'932R:U -> '0'1038R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'1038R:G -> '0'932R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'933R:C -> '0'934R:C: adjacent_5p upward } 0 5 {'0'934R:C -> '0'933R:C: adjacent_3p downward } 0 6 {'0'933R:C -> '0'1037R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1037R:G -> '0'933R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'934R:C -> '0'935R:G: adjacent_5p upward } 0 9 {'0'935R:G -> '0'934R:C: adjacent_3p downward } 0 10 {'0'934R:C -> '0'1036R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1036R:G -> '0'934R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'935R:G -> '0'1035R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1035R:C -> '0'935R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'935R:G -> '0'1036R:G: outward } 0 15 {'0'1036R:G -> '0'935R:G: outward } 0 16 {'0'1035R:C -> '0'1036R:G: adjacent_5p } 0 17 {'0'1036R:G -> '0'1035R:C: adjacent_3p } 0 18 {'0'1036R:G -> '0'1037R:G: adjacent_5p upward } 0 19 {'0'1037R:G -> '0'1036R:G: adjacent_3p downward } 0 20 {'0'1037R:G -> '0'1038R:G: adjacent_5p upward } 0 21 {'0'1038R:G -> '0'1037R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'933R:C 0 1 '0'934R:C 0 2 '0'935R:G 0 3 '0'936R:C 0 4 '0'1034R:G 0 5 '0'1035R:C 0 6 '0'1036R:G 0 7 '0'1037R:G 0 [Edges] 0 {'0'933R:C -> '0'934R:C: adjacent_5p upward } 0 1 {'0'934R:C -> '0'933R:C: adjacent_3p downward } 0 2 {'0'933R:C -> '0'1037R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1037R:G -> '0'933R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'934R:C -> '0'935R:G: adjacent_5p upward } 0 5 {'0'935R:G -> '0'934R:C: adjacent_3p downward } 0 6 {'0'934R:C -> '0'1036R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1036R:G -> '0'934R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'935R:G -> '0'936R:C: adjacent_5p upward } 0 9 {'0'936R:C -> '0'935R:G: adjacent_3p downward } 0 10 {'0'935R:G -> '0'1035R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1035R:C -> '0'935R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'935R:G -> '0'1036R:G: outward } 0 13 {'0'1036R:G -> '0'935R:G: outward } 0 14 {'0'936R:C -> '0'1034R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1034R:G -> '0'936R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1034R:G -> '0'1035R:C: adjacent_5p upward } 0 17 {'0'1035R:C -> '0'1034R:G: adjacent_3p downward } 0 18 {'0'1035R:C -> '0'1036R:G: adjacent_5p } 0 19 {'0'1036R:G -> '0'1035R:C: adjacent_3p } 0 20 {'0'1036R:G -> '0'1037R:G: adjacent_5p upward } 0 21 {'0'1037R:G -> '0'1036R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'934R:C 0 1 '0'935R:G 0 2 '0'936R:C 0 3 '0'937R:C 0 4 '0'1033R:C 0 5 '0'1034R:G 0 6 '0'1035R:C 0 7 '0'1036R:G 0 [Edges] 0 {'0'934R:C -> '0'935R:G: adjacent_5p upward } 0 1 {'0'935R:G -> '0'934R:C: adjacent_3p downward } 0 2 {'0'934R:C -> '0'1036R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1036R:G -> '0'934R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'935R:G -> '0'936R:C: adjacent_5p upward } 0 5 {'0'936R:C -> '0'935R:G: adjacent_3p downward } 0 6 {'0'935R:G -> '0'1035R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1035R:C -> '0'935R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'935R:G -> '0'1036R:G: outward } 0 9 {'0'1036R:G -> '0'935R:G: outward } 0 10 {'0'936R:C -> '0'937R:C: adjacent_5p upward } 0 11 {'0'937R:C -> '0'936R:C: adjacent_3p downward } 0 12 {'0'936R:C -> '0'1034R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1034R:G -> '0'936R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'937R:C -> '0'1033R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 15 {'0'1033R:C -> '0'937R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 16 {'0'1033R:C -> '0'1034R:G: adjacent_5p upward } 0 17 {'0'1034R:G -> '0'1033R:C: adjacent_3p downward } 0 18 {'0'1034R:G -> '0'1035R:C: adjacent_5p upward } 0 19 {'0'1035R:C -> '0'1034R:G: adjacent_3p downward } 0 20 {'0'1035R:C -> '0'1036R:G: adjacent_5p } 0 21 {'0'1036R:G -> '0'1035R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'935R:G 0 1 '0'936R:C 0 2 '0'937R:C 0 3 '0'938R:G 0 4 '0'1032R:A 0 5 '0'1033R:C 0 6 '0'1034R:G 0 7 '0'1035R:C 0 [Edges] 0 {'0'935R:G -> '0'936R:C: adjacent_5p upward } 0 1 {'0'936R:C -> '0'935R:G: adjacent_3p downward } 0 2 {'0'935R:G -> '0'1035R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1035R:C -> '0'935R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'936R:C -> '0'937R:C: adjacent_5p upward } 0 5 {'0'937R:C -> '0'936R:C: adjacent_3p downward } 0 6 {'0'936R:C -> '0'1034R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1034R:G -> '0'936R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'937R:C -> '0'938R:G: adjacent_5p upward } 0 9 {'0'938R:G -> '0'937R:C: adjacent_3p downward } 0 10 {'0'937R:C -> '0'1033R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 11 {'0'1033R:C -> '0'937R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 12 {'0'938R:G -> '0'1032R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {'0'1032R:A -> '0'938R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {'0'1032R:A -> '0'1033R:C: adjacent_5p upward } 0 15 {'0'1033R:C -> '0'1032R:A: adjacent_3p downward } 0 16 {'0'1033R:C -> '0'1034R:G: adjacent_5p upward } 0 17 {'0'1034R:G -> '0'1033R:C: adjacent_3p downward } 0 18 {'0'1034R:G -> '0'1035R:C: adjacent_5p upward } 0 19 {'0'1035R:C -> '0'1034R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'936R:C 0 1 '0'937R:C 0 2 '0'938R:G 0 3 '0'939R:A 0 4 '0'1031R:G 0 5 '0'1032R:A 0 6 '0'1033R:C 0 7 '0'1034R:G 0 [Edges] 0 {'0'936R:C -> '0'937R:C: adjacent_5p upward } 0 1 {'0'937R:C -> '0'936R:C: adjacent_3p downward } 0 2 {'0'936R:C -> '0'1034R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1034R:G -> '0'936R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'937R:C -> '0'938R:G: adjacent_5p upward } 0 5 {'0'938R:G -> '0'937R:C: adjacent_3p downward } 0 6 {'0'937R:C -> '0'1033R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 7 {'0'1033R:C -> '0'937R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 8 {'0'938R:G -> '0'939R:A: adjacent_5p } 0 9 {'0'939R:A -> '0'938R:G: adjacent_3p } 0 10 {'0'938R:G -> '0'1031R:G: inward } 0 11 {'0'1031R:G -> '0'938R:G: inward } 0 12 {'0'938R:G -> '0'1032R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {'0'1032R:A -> '0'938R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {'0'939R:A -> '0'1031R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {'0'1031R:G -> '0'939R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {'0'939R:A -> '0'1032R:A: outward } 0 17 {'0'1032R:A -> '0'939R:A: outward } 0 18 {'0'1031R:G -> '0'1032R:A: adjacent_5p } 0 19 {'0'1032R:A -> '0'1031R:G: adjacent_3p } 0 20 {'0'1032R:A -> '0'1033R:C: adjacent_5p upward } 0 21 {'0'1033R:C -> '0'1032R:A: adjacent_3p downward } 0 22 {'0'1033R:C -> '0'1034R:G: adjacent_5p upward } 0 23 {'0'1034R:G -> '0'1033R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 12 . . 3 . . 9 . 14 16 . . 4 . . 11 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 '0'939R:A 0 1 '0'940R:G 0 2 '0'941R:G 0 3 '0'942R:U 0 4 '0'1024R:G 0 5 '0'1025R:C 0 6 '0'1026R:C 0 7 '0'1027R:G 0 [Edges] 0 {'0'939R:A -> '0'940R:G: adjacent_5p } 0 1 {'0'940R:G -> '0'939R:A: adjacent_3p } 0 2 {'0'939R:A -> '0'1027R:G: pairing parallel trans one_hbond Bs/Ss } 0 3 {'0'1027R:G -> '0'939R:A: pairing parallel trans one_hbond Ss/Bs } 0 4 {'0'940R:G -> '0'941R:G: adjacent_5p upward } 0 5 {'0'941R:G -> '0'940R:G: adjacent_3p downward } 0 6 {'0'940R:G -> '0'1026R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 7 {'0'1026R:C -> '0'940R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 8 {'0'940R:G -> '0'1027R:G: outward } 0 9 {'0'1027R:G -> '0'940R:G: outward } 0 10 {'0'941R:G -> '0'942R:U: adjacent_5p upward } 0 11 {'0'942R:U -> '0'941R:G: adjacent_3p downward } 0 12 {'0'941R:G -> '0'1025R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1025R:C -> '0'941R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'942R:U -> '0'1024R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {'0'1024R:G -> '0'942R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {'0'1024R:G -> '0'1025R:C: adjacent_5p upward } 0 17 {'0'1025R:C -> '0'1024R:G: adjacent_3p downward } 0 18 {'0'1025R:C -> '0'1026R:C: adjacent_5p upward } 0 19 {'0'1026R:C -> '0'1025R:C: adjacent_3p downward } 0 20 {'0'1026R:C -> '0'1027R:G: adjacent_5p upward } 0 21 {'0'1027R:G -> '0'1026R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'944R:G 0 1 '0'945R:U 0 2 '0'946R:C 0 3 '0'947R:U 0 4 '0'1020R:A 0 5 '0'1021R:G 0 6 '0'1022R:A 0 7 '0'1023R:C 0 [Edges] 0 {'0'944R:G -> '0'945R:U: adjacent_5p upward } 0 1 {'0'945R:U -> '0'944R:G: adjacent_3p downward } 0 2 {'0'944R:G -> '0'1023R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1023R:C -> '0'944R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'945R:U -> '0'946R:C: adjacent_5p upward } 0 5 {'0'946R:C -> '0'945R:U: adjacent_3p downward } 0 6 {'0'945R:U -> '0'1022R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1022R:A -> '0'945R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'946R:C -> '0'947R:U: adjacent_5p upward } 0 9 {'0'947R:U -> '0'946R:C: adjacent_3p downward } 0 10 {'0'946R:C -> '0'1021R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1021R:G -> '0'946R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'947R:U -> '0'1020R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1020R:A -> '0'947R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1020R:A -> '0'1021R:G: adjacent_5p upward } 0 15 {'0'1021R:G -> '0'1020R:A: adjacent_3p downward } 0 16 {'0'1021R:G -> '0'1022R:A: adjacent_5p upward } 0 17 {'0'1022R:A -> '0'1021R:G: adjacent_3p downward } 0 18 {'0'1022R:A -> '0'1023R:C: adjacent_5p upward } 0 19 {'0'1023R:C -> '0'1022R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'945R:U 0 1 '0'946R:C 0 2 '0'947R:U 0 3 '0'948R:G 0 4 '0'1019R:C 0 5 '0'1020R:A 0 6 '0'1021R:G 0 7 '0'1022R:A 0 [Edges] 0 {'0'945R:U -> '0'946R:C: adjacent_5p upward } 0 1 {'0'946R:C -> '0'945R:U: adjacent_3p downward } 0 2 {'0'945R:U -> '0'1022R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1022R:A -> '0'945R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'946R:C -> '0'947R:U: adjacent_5p upward } 0 5 {'0'947R:U -> '0'946R:C: adjacent_3p downward } 0 6 {'0'946R:C -> '0'1021R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1021R:G -> '0'946R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'947R:U -> '0'948R:G: adjacent_5p } 0 9 {'0'948R:G -> '0'947R:U: adjacent_3p } 0 10 {'0'947R:U -> '0'1020R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1020R:A -> '0'947R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'948R:G -> '0'1019R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1019R:C -> '0'948R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'948R:G -> '0'1020R:A: outward } 0 15 {'0'1020R:A -> '0'948R:G: outward } 0 16 {'0'1019R:C -> '0'1020R:A: adjacent_5p upward } 0 17 {'0'1020R:A -> '0'1019R:C: adjacent_3p downward } 0 18 {'0'1020R:A -> '0'1021R:G: adjacent_5p upward } 0 19 {'0'1021R:G -> '0'1020R:A: adjacent_3p downward } 0 20 {'0'1021R:G -> '0'1022R:A: adjacent_5p upward } 0 21 {'0'1022R:A -> '0'1021R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'946R:C 0 1 '0'947R:U 0 2 '0'948R:G 0 3 '0'949R:U 0 4 '0'1018R:A 0 5 '0'1019R:C 0 6 '0'1020R:A 0 7 '0'1021R:G 0 [Edges] 0 {'0'946R:C -> '0'947R:U: adjacent_5p upward } 0 1 {'0'947R:U -> '0'946R:C: adjacent_3p downward } 0 2 {'0'946R:C -> '0'1021R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1021R:G -> '0'946R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'947R:U -> '0'948R:G: adjacent_5p } 0 5 {'0'948R:G -> '0'947R:U: adjacent_3p } 0 6 {'0'947R:U -> '0'1020R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1020R:A -> '0'947R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'948R:G -> '0'949R:U: adjacent_5p upward } 0 9 {'0'949R:U -> '0'948R:G: adjacent_3p downward } 0 10 {'0'948R:G -> '0'1019R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1019R:C -> '0'948R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'948R:G -> '0'1020R:A: outward } 0 13 {'0'1020R:A -> '0'948R:G: outward } 0 14 {'0'949R:U -> '0'1018R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1018R:A -> '0'949R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1018R:A -> '0'1019R:C: adjacent_5p upward } 0 17 {'0'1019R:C -> '0'1018R:A: adjacent_3p downward } 0 18 {'0'1019R:C -> '0'1020R:A: adjacent_5p upward } 0 19 {'0'1020R:A -> '0'1019R:C: adjacent_3p downward } 0 20 {'0'1020R:A -> '0'1021R:G: adjacent_5p upward } 0 21 {'0'1021R:G -> '0'1020R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'947R:U 0 1 '0'948R:G 0 2 '0'949R:U 0 3 '0'950R:G 0 4 '0'1017R:U 0 5 '0'1018R:A 0 6 '0'1019R:C 0 7 '0'1020R:A 0 [Edges] 0 {'0'947R:U -> '0'948R:G: adjacent_5p } 0 1 {'0'948R:G -> '0'947R:U: adjacent_3p } 0 2 {'0'947R:U -> '0'1020R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1020R:A -> '0'947R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'948R:G -> '0'949R:U: adjacent_5p upward } 0 5 {'0'949R:U -> '0'948R:G: adjacent_3p downward } 0 6 {'0'948R:G -> '0'1019R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1019R:C -> '0'948R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'948R:G -> '0'1020R:A: outward } 0 9 {'0'1020R:A -> '0'948R:G: outward } 0 10 {'0'949R:U -> '0'950R:G: adjacent_5p upward } 0 11 {'0'950R:G -> '0'949R:U: adjacent_3p downward } 0 12 {'0'949R:U -> '0'1018R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1018R:A -> '0'949R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'950R:G -> '0'1017R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {'0'1017R:U -> '0'950R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {'0'950R:G -> '0'1018R:A: outward } 0 17 {'0'1018R:A -> '0'950R:G: outward } 0 18 {'0'1017R:U -> '0'1018R:A: adjacent_5p } 0 19 {'0'1018R:A -> '0'1017R:U: adjacent_3p } 0 20 {'0'1018R:A -> '0'1019R:C: adjacent_5p upward } 0 21 {'0'1019R:C -> '0'1018R:A: adjacent_3p downward } 0 22 {'0'1019R:C -> '0'1020R:A: adjacent_5p upward } 0 23 {'0'1020R:A -> '0'1019R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'948R:G 0 1 '0'949R:U 0 2 '0'950R:G 0 3 '0'951R:A 0 4 '0'1016R:U 0 5 '0'1017R:U 0 6 '0'1018R:A 0 7 '0'1019R:C 0 [Edges] 0 {'0'948R:G -> '0'949R:U: adjacent_5p upward } 0 1 {'0'949R:U -> '0'948R:G: adjacent_3p downward } 0 2 {'0'948R:G -> '0'1019R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1019R:C -> '0'948R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'949R:U -> '0'950R:G: adjacent_5p upward } 0 5 {'0'950R:G -> '0'949R:U: adjacent_3p downward } 0 6 {'0'949R:U -> '0'1018R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1018R:A -> '0'949R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'950R:G -> '0'951R:A: adjacent_5p upward } 0 9 {'0'951R:A -> '0'950R:G: adjacent_3p downward } 0 10 {'0'950R:G -> '0'1017R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'1017R:U -> '0'950R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'950R:G -> '0'1018R:A: outward } 0 13 {'0'1018R:A -> '0'950R:G: outward } 0 14 {'0'951R:A -> '0'1016R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1016R:U -> '0'951R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1016R:U -> '0'1017R:U: adjacent_5p upward } 0 17 {'0'1017R:U -> '0'1016R:U: adjacent_3p downward } 0 18 {'0'1017R:U -> '0'1018R:A: adjacent_5p } 0 19 {'0'1018R:A -> '0'1017R:U: adjacent_3p } 0 20 {'0'1018R:A -> '0'1019R:C: adjacent_5p upward } 0 21 {'0'1019R:C -> '0'1018R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'949R:U 0 1 '0'950R:G 0 2 '0'951R:A 0 3 '0'952R:G 0 4 '0'1015R:C 0 5 '0'1016R:U 0 6 '0'1017R:U 0 7 '0'1018R:A 0 [Edges] 0 {'0'949R:U -> '0'950R:G: adjacent_5p upward } 0 1 {'0'950R:G -> '0'949R:U: adjacent_3p downward } 0 2 {'0'949R:U -> '0'1018R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1018R:A -> '0'949R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'950R:G -> '0'951R:A: adjacent_5p upward } 0 5 {'0'951R:A -> '0'950R:G: adjacent_3p downward } 0 6 {'0'950R:G -> '0'1017R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'1017R:U -> '0'950R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'950R:G -> '0'1018R:A: outward } 0 9 {'0'1018R:A -> '0'950R:G: outward } 0 10 {'0'951R:A -> '0'952R:G: adjacent_5p upward } 0 11 {'0'952R:G -> '0'951R:A: adjacent_3p downward } 0 12 {'0'951R:A -> '0'1016R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1016R:U -> '0'951R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'952R:G -> '0'1015R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1015R:C -> '0'952R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1015R:C -> '0'1016R:U: adjacent_5p } 0 17 {'0'1016R:U -> '0'1015R:C: adjacent_3p } 0 18 {'0'1016R:U -> '0'1017R:U: adjacent_5p upward } 0 19 {'0'1017R:U -> '0'1016R:U: adjacent_3p downward } 0 20 {'0'1017R:U -> '0'1018R:A: adjacent_5p } 0 21 {'0'1018R:A -> '0'1017R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'951R:A 0 1 '0'952R:G 0 2 '0'953R:G 0 3 '0'954R:U 0 4 '0'1013R:A 0 5 '0'1014R:A 0 6 '0'1015R:C 0 7 '0'1016R:U 0 [Edges] 0 {'0'951R:A -> '0'952R:G: adjacent_5p upward } 0 1 {'0'952R:G -> '0'951R:A: adjacent_3p downward } 0 2 {'0'951R:A -> '0'1016R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1016R:U -> '0'951R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'952R:G -> '0'953R:G: adjacent_5p } 0 5 {'0'953R:G -> '0'952R:G: adjacent_3p } 0 6 {'0'952R:G -> '0'1015R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1015R:C -> '0'952R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'953R:G -> '0'954R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 9 {'0'954R:U -> '0'953R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 10 {'0'954R:U -> '0'1013R:A: pairing antiparallel trans XXIV Ww/Hh } 0 11 {'0'1013R:A -> '0'954R:U: pairing antiparallel trans XXIV Hh/Ww } 0 12 {'0'1013R:A -> '0'1014R:A: adjacent_5p upward } 0 13 {'0'1014R:A -> '0'1013R:A: adjacent_3p downward } 0 14 {'0'1014R:A -> '0'1015R:C: adjacent_5p upward } 0 15 {'0'1015R:C -> '0'1014R:A: adjacent_3p downward } 0 16 {'0'1015R:C -> '0'1016R:U: adjacent_5p } 0 17 {'0'1016R:U -> '0'1015R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '0'952R:G 0 1 '0'953R:G 0 2 '0'954R:U 0 3 '0'955R:A 0 4 '0'1012R:A 0 5 '0'1013R:A 0 6 '0'1014R:A 0 7 '0'1015R:C 0 [Edges] 0 {'0'952R:G -> '0'953R:G: adjacent_5p } 0 1 {'0'953R:G -> '0'952R:G: adjacent_3p } 0 2 {'0'952R:G -> '0'1015R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1015R:C -> '0'952R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'953R:G -> '0'954R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 5 {'0'954R:U -> '0'953R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 6 {'0'953R:G -> '0'1012R:A: inward } 0 7 {'0'1012R:A -> '0'953R:G: inward } 0 8 {'0'954R:U -> '0'955R:A: adjacent_5p upward } 0 9 {'0'955R:A -> '0'954R:U: adjacent_3p downward } 0 10 {'0'954R:U -> '0'1013R:A: pairing antiparallel trans XXIV Ww/Hh } 0 11 {'0'1013R:A -> '0'954R:U: pairing antiparallel trans XXIV Hh/Ww } 0 12 {'0'955R:A -> '0'1012R:A: pairing antiparallel trans one_hbond 41 Hw/Ss } 0 13 {'0'1012R:A -> '0'955R:A: pairing antiparallel trans one_hbond 41 Ss/Hw } 0 14 {'0'955R:A -> '0'1013R:A: outward } 0 15 {'0'1013R:A -> '0'955R:A: outward } 0 16 {'0'1012R:A -> '0'1013R:A: adjacent_5p } 0 17 {'0'1013R:A -> '0'1012R:A: adjacent_3p } 0 18 {'0'1013R:A -> '0'1014R:A: adjacent_5p upward } 0 19 {'0'1014R:A -> '0'1013R:A: adjacent_3p downward } 0 20 {'0'1014R:A -> '0'1015R:C: adjacent_5p upward } 0 21 {'0'1015R:C -> '0'1014R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . . . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . 7 . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . . . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'963R:C 0 1 '0'964R:G 0 2 '0'965R:A 0 3 '0'966R:U 0 4 '0'1002R:G 0 5 '0'1003R:U 0 6 '0'1004R:C 0 7 '0'1005R:A 0 [Edges] 0 {'0'963R:C -> '0'964R:G: adjacent_5p upward } 0 1 {'0'964R:G -> '0'963R:C: adjacent_3p downward } 0 2 {'0'963R:C -> '0'1005R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 3 {'0'1005R:A -> '0'963R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 4 {'0'964R:G -> '0'965R:A: adjacent_5p upward } 0 5 {'0'965R:A -> '0'964R:G: adjacent_3p downward } 0 6 {'0'964R:G -> '0'1004R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1004R:C -> '0'964R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'964R:G -> '0'1005R:A: outward } 0 9 {'0'1005R:A -> '0'964R:G: outward } 0 10 {'0'965R:A -> '0'966R:U: adjacent_5p upward } 0 11 {'0'966R:U -> '0'965R:A: adjacent_3p downward } 0 12 {'0'965R:A -> '0'1003R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1003R:U -> '0'965R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'965R:A -> '0'1004R:C: outward } 0 15 {'0'1004R:C -> '0'965R:A: outward } 0 16 {'0'966R:U -> '0'1002R:G: pairing antiparallel cis 84 Bs/Ww } 0 17 {'0'1002R:G -> '0'966R:U: pairing antiparallel cis 84 Ww/Bs } 0 18 {'0'1002R:G -> '0'1003R:U: adjacent_5p upward } 0 19 {'0'1003R:U -> '0'1002R:G: adjacent_3p downward } 0 20 {'0'1003R:U -> '0'1004R:C: adjacent_5p } 0 21 {'0'1004R:C -> '0'1003R:U: adjacent_3p } 0 22 {'0'1004R:C -> '0'1005R:A: adjacent_5p } 0 23 {'0'1005R:A -> '0'1004R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'964R:G 0 1 '0'965R:A 0 2 '0'966R:U 0 3 '0'967R:U 0 4 '0'1001R:U 0 5 '0'1002R:G 0 6 '0'1003R:U 0 7 '0'1004R:C 0 [Edges] 0 {'0'964R:G -> '0'965R:A: adjacent_5p upward } 0 1 {'0'965R:A -> '0'964R:G: adjacent_3p downward } 0 2 {'0'964R:G -> '0'1004R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1004R:C -> '0'964R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'965R:A -> '0'966R:U: adjacent_5p upward } 0 5 {'0'966R:U -> '0'965R:A: adjacent_3p downward } 0 6 {'0'965R:A -> '0'1003R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1003R:U -> '0'965R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'965R:A -> '0'1004R:C: outward } 0 9 {'0'1004R:C -> '0'965R:A: outward } 0 10 {'0'966R:U -> '0'967R:U: adjacent_5p } 0 11 {'0'967R:U -> '0'966R:U: adjacent_3p } 0 12 {'0'966R:U -> '0'1002R:G: pairing antiparallel cis 84 Bs/Ww } 0 13 {'0'1002R:G -> '0'966R:U: pairing antiparallel cis 84 Ww/Bs } 0 14 {'0'967R:U -> '0'1001R:U: pairing antiparallel cis XVI Ww/Ws } 0 15 {'0'1001R:U -> '0'967R:U: pairing antiparallel cis XVI Ws/Ww } 0 16 {'0'967R:U -> '0'1002R:G: outward } 0 17 {'0'1002R:G -> '0'967R:U: outward } 0 18 {'0'1001R:U -> '0'1002R:G: adjacent_5p } 0 19 {'0'1002R:G -> '0'1001R:U: adjacent_3p } 0 20 {'0'1002R:G -> '0'1003R:U: adjacent_5p upward } 0 21 {'0'1003R:U -> '0'1002R:G: adjacent_3p downward } 0 22 {'0'1003R:U -> '0'1004R:C: adjacent_5p } 0 23 {'0'1004R:C -> '0'1003R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'965R:A 0 1 '0'966R:U 0 2 '0'967R:U 0 3 '0'968R:G 0 4 '0'1000R:C 0 5 '0'1001R:U 0 6 '0'1002R:G 0 7 '0'1003R:U 0 [Edges] 0 {'0'965R:A -> '0'966R:U: adjacent_5p upward } 0 1 {'0'966R:U -> '0'965R:A: adjacent_3p downward } 0 2 {'0'965R:A -> '0'1003R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1003R:U -> '0'965R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'966R:U -> '0'967R:U: adjacent_5p } 0 5 {'0'967R:U -> '0'966R:U: adjacent_3p } 0 6 {'0'966R:U -> '0'1002R:G: pairing antiparallel cis 84 Bs/Ww } 0 7 {'0'1002R:G -> '0'966R:U: pairing antiparallel cis 84 Ww/Bs } 0 8 {'0'967R:U -> '0'968R:G: adjacent_5p upward } 0 9 {'0'968R:G -> '0'967R:U: adjacent_3p downward } 0 10 {'0'967R:U -> '0'1001R:U: pairing antiparallel cis XVI Ww/Ws } 0 11 {'0'1001R:U -> '0'967R:U: pairing antiparallel cis XVI Ws/Ww } 0 12 {'0'967R:U -> '0'1002R:G: outward } 0 13 {'0'1002R:G -> '0'967R:U: outward } 0 14 {'0'968R:G -> '0'1000R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1000R:C -> '0'968R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1000R:C -> '0'1001R:U: adjacent_5p upward } 0 17 {'0'1001R:U -> '0'1000R:C: adjacent_3p downward } 0 18 {'0'1001R:U -> '0'1002R:G: adjacent_5p } 0 19 {'0'1002R:G -> '0'1001R:U: adjacent_3p } 0 20 {'0'1002R:G -> '0'1003R:U: adjacent_5p upward } 0 21 {'0'1003R:U -> '0'1002R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1045R:G 0 1 '0'1046R:G 0 2 '0'1047R:U 0 3 '0'1048R:G 0 4 '0'1066R:U 0 5 '0'1067R:A 0 6 '0'1068R:C 0 7 '0'1069R:C 0 [Edges] 0 {'0'1045R:G -> '0'1046R:G: adjacent_5p upward } 0 1 {'0'1046R:G -> '0'1045R:G: adjacent_3p downward } 0 2 {'0'1045R:G -> '0'1069R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1069R:C -> '0'1045R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1046R:G -> '0'1047R:U: adjacent_5p upward } 0 5 {'0'1047R:U -> '0'1046R:G: adjacent_3p downward } 0 6 {'0'1046R:G -> '0'1068R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1068R:C -> '0'1046R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1047R:U -> '0'1048R:G: adjacent_5p } 0 9 {'0'1048R:G -> '0'1047R:U: adjacent_3p } 0 10 {'0'1047R:U -> '0'1067R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1067R:A -> '0'1047R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1048R:G -> '0'1066R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {'0'1066R:U -> '0'1048R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {'0'1048R:G -> '0'1067R:A: outward } 0 15 {'0'1067R:A -> '0'1048R:G: outward } 0 16 {'0'1066R:U -> '0'1067R:A: adjacent_5p upward } 0 17 {'0'1067R:A -> '0'1066R:U: adjacent_3p downward } 0 18 {'0'1067R:A -> '0'1068R:C: adjacent_5p upward } 0 19 {'0'1068R:C -> '0'1067R:A: adjacent_3p downward } 0 20 {'0'1068R:C -> '0'1069R:C: adjacent_5p } 0 21 {'0'1069R:C -> '0'1068R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1046R:G 0 1 '0'1047R:U 0 2 '0'1048R:G 0 3 '0'1049R:C 0 4 '0'1065R:G 0 5 '0'1066R:U 0 6 '0'1067R:A 0 7 '0'1068R:C 0 [Edges] 0 {'0'1046R:G -> '0'1047R:U: adjacent_5p upward } 0 1 {'0'1047R:U -> '0'1046R:G: adjacent_3p downward } 0 2 {'0'1046R:G -> '0'1068R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1068R:C -> '0'1046R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1047R:U -> '0'1048R:G: adjacent_5p } 0 5 {'0'1048R:G -> '0'1047R:U: adjacent_3p } 0 6 {'0'1047R:U -> '0'1067R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1067R:A -> '0'1047R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1048R:G -> '0'1049R:C: adjacent_5p upward } 0 9 {'0'1049R:C -> '0'1048R:G: adjacent_3p downward } 0 10 {'0'1048R:G -> '0'1066R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'1066R:U -> '0'1048R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'1048R:G -> '0'1067R:A: outward } 0 13 {'0'1067R:A -> '0'1048R:G: outward } 0 14 {'0'1049R:C -> '0'1065R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1065R:G -> '0'1049R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1065R:G -> '0'1066R:U: adjacent_5p upward } 0 17 {'0'1066R:U -> '0'1065R:G: adjacent_3p downward } 0 18 {'0'1066R:U -> '0'1067R:A: adjacent_5p upward } 0 19 {'0'1067R:A -> '0'1066R:U: adjacent_3p downward } 0 20 {'0'1067R:A -> '0'1068R:C: adjacent_5p upward } 0 21 {'0'1068R:C -> '0'1067R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1047R:U 0 1 '0'1048R:G 0 2 '0'1049R:C 0 3 '0'1050R:G 0 4 '0'1064R:U 0 5 '0'1065R:G 0 6 '0'1066R:U 0 7 '0'1067R:A 0 [Edges] 0 {'0'1047R:U -> '0'1048R:G: adjacent_5p } 0 1 {'0'1048R:G -> '0'1047R:U: adjacent_3p } 0 2 {'0'1047R:U -> '0'1067R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1067R:A -> '0'1047R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1048R:G -> '0'1049R:C: adjacent_5p upward } 0 5 {'0'1049R:C -> '0'1048R:G: adjacent_3p downward } 0 6 {'0'1048R:G -> '0'1066R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'1066R:U -> '0'1048R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'1048R:G -> '0'1067R:A: outward } 0 9 {'0'1067R:A -> '0'1048R:G: outward } 0 10 {'0'1049R:C -> '0'1050R:G: adjacent_5p upward } 0 11 {'0'1050R:G -> '0'1049R:C: adjacent_3p downward } 0 12 {'0'1049R:C -> '0'1065R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1065R:G -> '0'1049R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1050R:G -> '0'1064R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {'0'1064R:U -> '0'1050R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {'0'1050R:G -> '0'1065R:G: outward } 0 17 {'0'1065R:G -> '0'1050R:G: outward } 0 18 {'0'1064R:U -> '0'1065R:G: adjacent_5p } 0 19 {'0'1065R:G -> '0'1064R:U: adjacent_3p } 0 20 {'0'1065R:G -> '0'1066R:U: adjacent_5p upward } 0 21 {'0'1066R:U -> '0'1065R:G: adjacent_3p downward } 0 22 {'0'1066R:U -> '0'1067R:A: adjacent_5p upward } 0 23 {'0'1067R:A -> '0'1066R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'1048R:G 0 1 '0'1049R:C 0 2 '0'1050R:G 0 3 '0'1051R:C 0 4 '0'1063R:G 0 5 '0'1064R:U 0 6 '0'1065R:G 0 7 '0'1066R:U 0 [Edges] 0 {'0'1048R:G -> '0'1049R:C: adjacent_5p upward } 0 1 {'0'1049R:C -> '0'1048R:G: adjacent_3p downward } 0 2 {'0'1048R:G -> '0'1066R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'1066R:U -> '0'1048R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'1049R:C -> '0'1050R:G: adjacent_5p upward } 0 5 {'0'1050R:G -> '0'1049R:C: adjacent_3p downward } 0 6 {'0'1049R:C -> '0'1065R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1065R:G -> '0'1049R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1050R:G -> '0'1051R:C: adjacent_5p upward } 0 9 {'0'1051R:C -> '0'1050R:G: adjacent_3p downward } 0 10 {'0'1050R:G -> '0'1064R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'1064R:U -> '0'1050R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'1050R:G -> '0'1065R:G: outward } 0 13 {'0'1065R:G -> '0'1050R:G: outward } 0 14 {'0'1051R:C -> '0'1063R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1063R:G -> '0'1051R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1063R:G -> '0'1064R:U: adjacent_5p upward } 0 17 {'0'1064R:U -> '0'1063R:G: adjacent_3p downward } 0 18 {'0'1064R:U -> '0'1065R:G: adjacent_5p } 0 19 {'0'1065R:G -> '0'1064R:U: adjacent_3p } 0 20 {'0'1065R:G -> '0'1066R:U: adjacent_5p upward } 0 21 {'0'1066R:U -> '0'1065R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1049R:C 0 1 '0'1050R:G 0 2 '0'1051R:C 0 3 '0'1052R:G 0 4 '0'1062R:U 0 5 '0'1063R:G 0 6 '0'1064R:U 0 7 '0'1065R:G 0 [Edges] 0 {'0'1049R:C -> '0'1050R:G: adjacent_5p upward } 0 1 {'0'1050R:G -> '0'1049R:C: adjacent_3p downward } 0 2 {'0'1049R:C -> '0'1065R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1065R:G -> '0'1049R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1050R:G -> '0'1051R:C: adjacent_5p upward } 0 5 {'0'1051R:C -> '0'1050R:G: adjacent_3p downward } 0 6 {'0'1050R:G -> '0'1064R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'1064R:U -> '0'1050R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'1050R:G -> '0'1065R:G: outward } 0 9 {'0'1065R:G -> '0'1050R:G: outward } 0 10 {'0'1051R:C -> '0'1052R:G: adjacent_5p } 0 11 {'0'1052R:G -> '0'1051R:C: adjacent_3p } 0 12 {'0'1051R:C -> '0'1063R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1063R:G -> '0'1051R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1052R:G -> '0'1062R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {'0'1062R:U -> '0'1052R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {'0'1052R:G -> '0'1063R:G: outward } 0 17 {'0'1063R:G -> '0'1052R:G: outward } 0 18 {'0'1062R:U -> '0'1063R:G: adjacent_5p } 0 19 {'0'1063R:G -> '0'1062R:U: adjacent_3p } 0 20 {'0'1063R:G -> '0'1064R:U: adjacent_5p upward } 0 21 {'0'1064R:U -> '0'1063R:G: adjacent_3p downward } 0 22 {'0'1064R:U -> '0'1065R:G: adjacent_5p } 0 23 {'0'1065R:G -> '0'1064R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'1050R:G 0 1 '0'1051R:C 0 2 '0'1052R:G 0 3 '0'1053R:G 0 4 '0'1061R:C 0 5 '0'1062R:U 0 6 '0'1063R:G 0 7 '0'1064R:U 0 [Edges] 0 {'0'1050R:G -> '0'1051R:C: adjacent_5p upward } 0 1 {'0'1051R:C -> '0'1050R:G: adjacent_3p downward } 0 2 {'0'1050R:G -> '0'1064R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'1064R:U -> '0'1050R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'1051R:C -> '0'1052R:G: adjacent_5p } 0 5 {'0'1052R:G -> '0'1051R:C: adjacent_3p } 0 6 {'0'1051R:C -> '0'1063R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1063R:G -> '0'1051R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1052R:G -> '0'1053R:G: adjacent_5p upward } 0 9 {'0'1053R:G -> '0'1052R:G: adjacent_3p downward } 0 10 {'0'1052R:G -> '0'1062R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'1062R:U -> '0'1052R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'1052R:G -> '0'1063R:G: outward } 0 13 {'0'1063R:G -> '0'1052R:G: outward } 0 14 {'0'1053R:G -> '0'1061R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1061R:C -> '0'1053R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1061R:C -> '0'1062R:U: adjacent_5p upward } 0 17 {'0'1062R:U -> '0'1061R:C: adjacent_3p downward } 0 18 {'0'1062R:U -> '0'1063R:G: adjacent_5p } 0 19 {'0'1063R:G -> '0'1062R:U: adjacent_3p } 0 20 {'0'1063R:G -> '0'1064R:U: adjacent_5p upward } 0 21 {'0'1064R:U -> '0'1063R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1051R:C 0 1 '0'1052R:G 0 2 '0'1053R:G 0 3 '0'1054R:G 0 4 '0'1060R:C 0 5 '0'1061R:C 0 6 '0'1062R:U 0 7 '0'1063R:G 0 [Edges] 0 {'0'1051R:C -> '0'1052R:G: adjacent_5p } 0 1 {'0'1052R:G -> '0'1051R:C: adjacent_3p } 0 2 {'0'1051R:C -> '0'1063R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1063R:G -> '0'1051R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1052R:G -> '0'1053R:G: adjacent_5p upward } 0 5 {'0'1053R:G -> '0'1052R:G: adjacent_3p downward } 0 6 {'0'1052R:G -> '0'1062R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'1062R:U -> '0'1052R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'1052R:G -> '0'1063R:G: outward } 0 9 {'0'1063R:G -> '0'1052R:G: outward } 0 10 {'0'1053R:G -> '0'1054R:G: adjacent_5p upward } 0 11 {'0'1054R:G -> '0'1053R:G: adjacent_3p downward } 0 12 {'0'1053R:G -> '0'1061R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1061R:C -> '0'1053R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1054R:G -> '0'1060R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1060R:C -> '0'1054R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1060R:C -> '0'1061R:C: adjacent_5p } 0 17 {'0'1061R:C -> '0'1060R:C: adjacent_3p } 0 18 {'0'1061R:C -> '0'1062R:U: adjacent_5p upward } 0 19 {'0'1062R:U -> '0'1061R:C: adjacent_3p downward } 0 20 {'0'1062R:U -> '0'1063R:G: adjacent_5p } 0 21 {'0'1063R:G -> '0'1062R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1089R:G 0 1 '0'1090R:A 0 2 '0'1091R:U 0 3 '0'1092R:A 0 4 '0'1264R:U 0 5 '0'1265R:G 0 6 '0'1266R:U 0 7 '0'1267R:C 0 [Edges] 0 {'0'1089R:G -> '0'1090R:A: adjacent_5p upward } 0 1 {'0'1090R:A -> '0'1089R:G: adjacent_3p downward } 0 2 {'0'1089R:G -> '0'1267R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1267R:C -> '0'1089R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1090R:A -> '0'1091R:U: adjacent_5p upward } 0 5 {'0'1091R:U -> '0'1090R:A: adjacent_3p downward } 0 6 {'0'1090R:A -> '0'1266R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1266R:U -> '0'1090R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1091R:U -> '0'1092R:A: adjacent_5p } 0 9 {'0'1092R:A -> '0'1091R:U: adjacent_3p } 0 10 {'0'1091R:U -> '0'1265R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {'0'1265R:G -> '0'1091R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {'0'1092R:A -> '0'1264R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1264R:U -> '0'1092R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1092R:A -> '0'1265R:G: outward } 0 15 {'0'1265R:G -> '0'1092R:A: outward } 0 16 {'0'1264R:U -> '0'1265R:G: adjacent_5p } 0 17 {'0'1265R:G -> '0'1264R:U: adjacent_3p } 0 18 {'0'1265R:G -> '0'1266R:U: adjacent_5p upward } 0 19 {'0'1266R:U -> '0'1265R:G: adjacent_3p downward } 0 20 {'0'1266R:U -> '0'1267R:C: adjacent_5p upward } 0 21 {'0'1267R:C -> '0'1266R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1090R:A 0 1 '0'1091R:U 0 2 '0'1092R:A 0 3 '0'1093R:G 0 4 '0'1263R:C 0 5 '0'1264R:U 0 6 '0'1265R:G 0 7 '0'1266R:U 0 [Edges] 0 {'0'1090R:A -> '0'1091R:U: adjacent_5p upward } 0 1 {'0'1091R:U -> '0'1090R:A: adjacent_3p downward } 0 2 {'0'1090R:A -> '0'1266R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1266R:U -> '0'1090R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1091R:U -> '0'1092R:A: adjacent_5p } 0 5 {'0'1092R:A -> '0'1091R:U: adjacent_3p } 0 6 {'0'1091R:U -> '0'1265R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'1265R:G -> '0'1091R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'1092R:A -> '0'1093R:G: adjacent_5p upward } 0 9 {'0'1093R:G -> '0'1092R:A: adjacent_3p downward } 0 10 {'0'1092R:A -> '0'1264R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1264R:U -> '0'1092R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1092R:A -> '0'1265R:G: outward } 0 13 {'0'1265R:G -> '0'1092R:A: outward } 0 14 {'0'1093R:G -> '0'1263R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1263R:C -> '0'1093R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1263R:C -> '0'1264R:U: adjacent_5p upward } 0 17 {'0'1264R:U -> '0'1263R:C: adjacent_3p downward } 0 18 {'0'1264R:U -> '0'1265R:G: adjacent_5p } 0 19 {'0'1265R:G -> '0'1264R:U: adjacent_3p } 0 20 {'0'1265R:G -> '0'1266R:U: adjacent_5p upward } 0 21 {'0'1266R:U -> '0'1265R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1091R:U 0 1 '0'1092R:A 0 2 '0'1093R:G 0 3 '0'1094R:G 0 4 '0'1262R:C 0 5 '0'1263R:C 0 6 '0'1264R:U 0 7 '0'1265R:G 0 [Edges] 0 {'0'1091R:U -> '0'1092R:A: adjacent_5p } 0 1 {'0'1092R:A -> '0'1091R:U: adjacent_3p } 0 2 {'0'1091R:U -> '0'1265R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'1265R:G -> '0'1091R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'1092R:A -> '0'1093R:G: adjacent_5p upward } 0 5 {'0'1093R:G -> '0'1092R:A: adjacent_3p downward } 0 6 {'0'1092R:A -> '0'1264R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1264R:U -> '0'1092R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1092R:A -> '0'1265R:G: outward } 0 9 {'0'1265R:G -> '0'1092R:A: outward } 0 10 {'0'1093R:G -> '0'1094R:G: adjacent_5p upward } 0 11 {'0'1094R:G -> '0'1093R:G: adjacent_3p downward } 0 12 {'0'1093R:G -> '0'1263R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1263R:C -> '0'1093R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1094R:G -> '0'1262R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1262R:C -> '0'1094R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1262R:C -> '0'1263R:C: adjacent_5p upward } 0 17 {'0'1263R:C -> '0'1262R:C: adjacent_3p downward } 0 18 {'0'1263R:C -> '0'1264R:U: adjacent_5p upward } 0 19 {'0'1264R:U -> '0'1263R:C: adjacent_3p downward } 0 20 {'0'1264R:U -> '0'1265R:G: adjacent_5p } 0 21 {'0'1265R:G -> '0'1264R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1092R:A 0 1 '0'1093R:G 0 2 '0'1094R:G 0 3 '0'1095R:U 0 4 '0'1261R:A 0 5 '0'1262R:C 0 6 '0'1263R:C 0 7 '0'1264R:U 0 [Edges] 0 {'0'1092R:A -> '0'1093R:G: adjacent_5p upward } 0 1 {'0'1093R:G -> '0'1092R:A: adjacent_3p downward } 0 2 {'0'1092R:A -> '0'1264R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1264R:U -> '0'1092R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1093R:G -> '0'1094R:G: adjacent_5p upward } 0 5 {'0'1094R:G -> '0'1093R:G: adjacent_3p downward } 0 6 {'0'1093R:G -> '0'1263R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1263R:C -> '0'1093R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1094R:G -> '0'1095R:U: adjacent_5p upward } 0 9 {'0'1095R:U -> '0'1094R:G: adjacent_3p downward } 0 10 {'0'1094R:G -> '0'1262R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1262R:C -> '0'1094R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1095R:U -> '0'1261R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1261R:A -> '0'1095R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1261R:A -> '0'1262R:C: adjacent_5p upward } 0 15 {'0'1262R:C -> '0'1261R:A: adjacent_3p downward } 0 16 {'0'1262R:C -> '0'1263R:C: adjacent_5p upward } 0 17 {'0'1263R:C -> '0'1262R:C: adjacent_3p downward } 0 18 {'0'1263R:C -> '0'1264R:U: adjacent_5p upward } 0 19 {'0'1264R:U -> '0'1263R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1095R:U 0 1 '0'1096R:U 0 2 '0'1097R:A 0 3 '0'1098R:A 0 4 '0'1258R:G 0 5 '0'1259R:A 0 6 '0'1260R:G 0 7 '0'1261R:A 0 [Edges] 0 {'0'1095R:U -> '0'1096R:U: adjacent_5p upward } 0 1 {'0'1096R:U -> '0'1095R:U: adjacent_3p downward } 0 2 {'0'1095R:U -> '0'1261R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1261R:A -> '0'1095R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1096R:U -> '0'1097R:A: adjacent_5p } 0 5 {'0'1097R:A -> '0'1096R:U: adjacent_3p } 0 6 {'0'1096R:U -> '0'1259R:A: pairing antiparallel trans XXIV Ww/Hh } 0 7 {'0'1259R:A -> '0'1096R:U: pairing antiparallel trans XXIV Hh/Ww } 0 8 {'0'1097R:A -> '0'1098R:A: adjacent_5p upward } 0 9 {'0'1098R:A -> '0'1097R:A: adjacent_3p downward } 0 10 {'0'1097R:A -> '0'1259R:A: outward } 0 11 {'0'1259R:A -> '0'1097R:A: outward } 0 12 {'0'1098R:A -> '0'1258R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {'0'1258R:G -> '0'1098R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {'0'1258R:G -> '0'1259R:A: adjacent_5p } 0 15 {'0'1259R:A -> '0'1258R:G: adjacent_3p } 0 16 {'0'1259R:A -> '0'1260R:G: adjacent_5p } 0 17 {'0'1260R:G -> '0'1259R:A: adjacent_3p } 0 18 {'0'1259R:A -> '0'1261R:A: upward } 0 19 {'0'1261R:A -> '0'1259R:A: downward } 0 20 {'0'1260R:G -> '0'1261R:A: adjacent_5p } 0 21 {'0'1261R:A -> '0'1260R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 . . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . 7 11 . 15 . 16 18 6 . . . . . 17 . 20 7 3 . . . . 19 21 . [GraphModel] [Vertices] 0 '0'1098R:A 0 1 '0'1099R:G 0 2 '0'1100R:G 0 3 '0'1101R:U 0 4 '0'1255R:A 0 5 '0'1256R:C 0 6 '0'1257R:C 0 7 '0'1258R:G 0 [Edges] 0 {'0'1098R:A -> '0'1099R:G: adjacent_5p upward } 0 1 {'0'1099R:G -> '0'1098R:A: adjacent_3p downward } 0 2 {'0'1098R:A -> '0'1258R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'1258R:G -> '0'1098R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'1099R:G -> '0'1100R:G: adjacent_5p upward } 0 5 {'0'1100R:G -> '0'1099R:G: adjacent_3p downward } 0 6 {'0'1099R:G -> '0'1257R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1257R:C -> '0'1099R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1100R:G -> '0'1101R:U: adjacent_5p upward } 0 9 {'0'1101R:U -> '0'1100R:G: adjacent_3p downward } 0 10 {'0'1100R:G -> '0'1256R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1256R:C -> '0'1100R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1101R:U -> '0'1255R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1255R:A -> '0'1101R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1255R:A -> '0'1256R:C: adjacent_5p upward } 0 15 {'0'1256R:C -> '0'1255R:A: adjacent_3p downward } 0 16 {'0'1256R:C -> '0'1257R:C: adjacent_5p } 0 17 {'0'1257R:C -> '0'1256R:C: adjacent_3p } 0 18 {'0'1257R:C -> '0'1258R:G: adjacent_5p upward } 0 19 {'0'1258R:G -> '0'1257R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1110R:G 0 1 '0'1111R:U 0 2 '0'1112R:G 0 3 '0'1113R:G 0 4 '0'1250R:C 0 5 '0'1251R:C 0 6 '0'1252R:A 0 7 '0'1253R:C 0 [Edges] 0 {'0'1110R:G -> '0'1111R:U: adjacent_5p upward } 0 1 {'0'1111R:U -> '0'1110R:G: adjacent_3p downward } 0 2 {'0'1110R:G -> '0'1253R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1253R:C -> '0'1110R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1111R:U -> '0'1112R:G: adjacent_5p upward } 0 5 {'0'1112R:G -> '0'1111R:U: adjacent_3p downward } 0 6 {'0'1111R:U -> '0'1252R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1252R:A -> '0'1111R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1112R:G -> '0'1113R:G: adjacent_5p upward } 0 9 {'0'1113R:G -> '0'1112R:G: adjacent_3p downward } 0 10 {'0'1112R:G -> '0'1251R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1251R:C -> '0'1112R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1112R:G -> '0'1252R:A: outward } 0 13 {'0'1252R:A -> '0'1112R:G: outward } 0 14 {'0'1113R:G -> '0'1250R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1250R:C -> '0'1113R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1250R:C -> '0'1251R:C: adjacent_5p } 0 17 {'0'1251R:C -> '0'1250R:C: adjacent_3p } 0 18 {'0'1251R:C -> '0'1252R:A: adjacent_5p upward } 0 19 {'0'1252R:A -> '0'1251R:C: adjacent_3p downward } 0 20 {'0'1252R:A -> '0'1253R:C: adjacent_5p upward } 0 21 {'0'1253R:C -> '0'1252R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1111R:U 0 1 '0'1112R:G 0 2 '0'1113R:G 0 3 '0'1114R:A 0 4 '0'1249R:U 0 5 '0'1250R:C 0 6 '0'1251R:C 0 7 '0'1252R:A 0 [Edges] 0 {'0'1111R:U -> '0'1112R:G: adjacent_5p upward } 0 1 {'0'1112R:G -> '0'1111R:U: adjacent_3p downward } 0 2 {'0'1111R:U -> '0'1252R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1252R:A -> '0'1111R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1112R:G -> '0'1113R:G: adjacent_5p upward } 0 5 {'0'1113R:G -> '0'1112R:G: adjacent_3p downward } 0 6 {'0'1112R:G -> '0'1251R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1251R:C -> '0'1112R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1112R:G -> '0'1252R:A: outward } 0 9 {'0'1252R:A -> '0'1112R:G: outward } 0 10 {'0'1113R:G -> '0'1114R:A: adjacent_5p upward } 0 11 {'0'1114R:A -> '0'1113R:G: adjacent_3p downward } 0 12 {'0'1113R:G -> '0'1250R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1250R:C -> '0'1113R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1114R:A -> '0'1249R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1249R:U -> '0'1114R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1249R:U -> '0'1250R:C: adjacent_5p upward } 0 17 {'0'1250R:C -> '0'1249R:U: adjacent_3p downward } 0 18 {'0'1250R:C -> '0'1251R:C: adjacent_5p } 0 19 {'0'1251R:C -> '0'1250R:C: adjacent_3p } 0 20 {'0'1251R:C -> '0'1252R:A: adjacent_5p upward } 0 21 {'0'1252R:A -> '0'1251R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1112R:G 0 1 '0'1113R:G 0 2 '0'1114R:A 0 3 '0'1115R:U 0 4 '0'1248R:A 0 5 '0'1249R:U 0 6 '0'1250R:C 0 7 '0'1251R:C 0 [Edges] 0 {'0'1112R:G -> '0'1113R:G: adjacent_5p upward } 0 1 {'0'1113R:G -> '0'1112R:G: adjacent_3p downward } 0 2 {'0'1112R:G -> '0'1251R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1251R:C -> '0'1112R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1113R:G -> '0'1114R:A: adjacent_5p upward } 0 5 {'0'1114R:A -> '0'1113R:G: adjacent_3p downward } 0 6 {'0'1113R:G -> '0'1250R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1250R:C -> '0'1113R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1114R:A -> '0'1115R:U: adjacent_5p upward } 0 9 {'0'1115R:U -> '0'1114R:A: adjacent_3p downward } 0 10 {'0'1114R:A -> '0'1249R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1249R:U -> '0'1114R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1115R:U -> '0'1248R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1248R:A -> '0'1115R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1248R:A -> '0'1249R:U: adjacent_5p upward } 0 15 {'0'1249R:U -> '0'1248R:A: adjacent_3p downward } 0 16 {'0'1249R:U -> '0'1250R:C: adjacent_5p upward } 0 17 {'0'1250R:C -> '0'1249R:U: adjacent_3p downward } 0 18 {'0'1250R:C -> '0'1251R:C: adjacent_5p } 0 19 {'0'1251R:C -> '0'1250R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1132R:A 0 1 '0'1133R:A 0 2 '0'1134R:G 0 3 '0'1135R:G 0 4 '0'1227R:C 0 5 '0'1228R:C 0 6 '0'1229R:C 0 7 '0'1230R:A 0 [Edges] 0 {'0'1132R:A -> '0'1133R:A: adjacent_5p upward } 0 1 {'0'1133R:A -> '0'1132R:A: adjacent_3p downward } 0 2 {'0'1132R:A -> '0'1230R:A: pairing parallel trans II Hh/Hh } 0 3 {'0'1230R:A -> '0'1132R:A: pairing parallel trans II Hh/Hh } 0 4 {'0'1133R:A -> '0'1134R:G: adjacent_5p upward } 0 5 {'0'1134R:G -> '0'1133R:A: adjacent_3p downward } 0 6 {'0'1133R:A -> '0'1229R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 7 {'0'1229R:C -> '0'1133R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 8 {'0'1134R:G -> '0'1135R:G: adjacent_5p upward } 0 9 {'0'1135R:G -> '0'1134R:G: adjacent_3p downward } 0 10 {'0'1134R:G -> '0'1228R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1228R:C -> '0'1134R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1135R:G -> '0'1227R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1227R:C -> '0'1135R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1227R:C -> '0'1228R:C: adjacent_5p } 0 15 {'0'1228R:C -> '0'1227R:C: adjacent_3p } 0 16 {'0'1228R:C -> '0'1229R:C: adjacent_5p upward } 0 17 {'0'1229R:C -> '0'1228R:C: adjacent_3p downward } 0 18 {'0'1229R:C -> '0'1230R:A: adjacent_5p inward } 0 19 {'0'1230R:A -> '0'1229R:C: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1133R:A 0 1 '0'1134R:G 0 2 '0'1135R:G 0 3 '0'1136R:U 0 4 '0'1226R:G 0 5 '0'1227R:C 0 6 '0'1228R:C 0 7 '0'1229R:C 0 [Edges] 0 {'0'1133R:A -> '0'1134R:G: adjacent_5p upward } 0 1 {'0'1134R:G -> '0'1133R:A: adjacent_3p downward } 0 2 {'0'1133R:A -> '0'1229R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 3 {'0'1229R:C -> '0'1133R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 4 {'0'1134R:G -> '0'1135R:G: adjacent_5p upward } 0 5 {'0'1135R:G -> '0'1134R:G: adjacent_3p downward } 0 6 {'0'1134R:G -> '0'1228R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1228R:C -> '0'1134R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1135R:G -> '0'1136R:U: adjacent_5p upward } 0 9 {'0'1136R:U -> '0'1135R:G: adjacent_3p downward } 0 10 {'0'1135R:G -> '0'1227R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1227R:C -> '0'1135R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1136R:U -> '0'1226R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {'0'1226R:G -> '0'1136R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {'0'1226R:G -> '0'1227R:C: adjacent_5p upward } 0 15 {'0'1227R:C -> '0'1226R:G: adjacent_3p downward } 0 16 {'0'1227R:C -> '0'1228R:C: adjacent_5p } 0 17 {'0'1228R:C -> '0'1227R:C: adjacent_3p } 0 18 {'0'1228R:C -> '0'1229R:C: adjacent_5p upward } 0 19 {'0'1229R:C -> '0'1228R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1138R:G 0 1 '0'1139R:U 0 2 '0'1140R:C 0 3 '0'1141R:U 0 4 '0'1222R:A 0 5 '0'1223R:G 0 6 '0'1224R:G 0 7 '0'1225R:C 0 [Edges] 0 {'0'1138R:G -> '0'1139R:U: adjacent_5p upward } 0 1 {'0'1139R:U -> '0'1138R:G: adjacent_3p downward } 0 2 {'0'1138R:G -> '0'1225R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1225R:C -> '0'1138R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1139R:U -> '0'1140R:C: adjacent_5p } 0 5 {'0'1140R:C -> '0'1139R:U: adjacent_3p } 0 6 {'0'1139R:U -> '0'1224R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'1224R:G -> '0'1139R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'1140R:C -> '0'1141R:U: adjacent_5p upward } 0 9 {'0'1141R:U -> '0'1140R:C: adjacent_3p downward } 0 10 {'0'1140R:C -> '0'1223R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1223R:G -> '0'1140R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1141R:U -> '0'1222R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1222R:A -> '0'1141R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1222R:A -> '0'1223R:G: adjacent_5p upward } 0 15 {'0'1223R:G -> '0'1222R:A: adjacent_3p downward } 0 16 {'0'1223R:G -> '0'1224R:G: adjacent_5p upward } 0 17 {'0'1224R:G -> '0'1223R:G: adjacent_3p downward } 0 18 {'0'1224R:G -> '0'1225R:C: adjacent_5p upward } 0 19 {'0'1225R:C -> '0'1224R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1139R:U 0 1 '0'1140R:C 0 2 '0'1141R:U 0 3 '0'1142R:C 0 4 '0'1221R:G 0 5 '0'1222R:A 0 6 '0'1223R:G 0 7 '0'1224R:G 0 [Edges] 0 {'0'1139R:U -> '0'1140R:C: adjacent_5p } 0 1 {'0'1140R:C -> '0'1139R:U: adjacent_3p } 0 2 {'0'1139R:U -> '0'1224R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'1224R:G -> '0'1139R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'1140R:C -> '0'1141R:U: adjacent_5p upward } 0 5 {'0'1141R:U -> '0'1140R:C: adjacent_3p downward } 0 6 {'0'1140R:C -> '0'1223R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1223R:G -> '0'1140R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1141R:U -> '0'1142R:C: adjacent_5p } 0 9 {'0'1142R:C -> '0'1141R:U: adjacent_3p } 0 10 {'0'1141R:U -> '0'1222R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1222R:A -> '0'1141R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1142R:C -> '0'1221R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1221R:G -> '0'1142R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1221R:G -> '0'1222R:A: adjacent_5p upward } 0 15 {'0'1222R:A -> '0'1221R:G: adjacent_3p downward } 0 16 {'0'1222R:A -> '0'1223R:G: adjacent_5p upward } 0 17 {'0'1223R:G -> '0'1222R:A: adjacent_3p downward } 0 18 {'0'1223R:G -> '0'1224R:G: adjacent_5p upward } 0 19 {'0'1224R:G -> '0'1223R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1140R:C 0 1 '0'1141R:U 0 2 '0'1142R:C 0 3 '0'1143R:G 0 4 '0'1220R:U 0 5 '0'1221R:G 0 6 '0'1222R:A 0 7 '0'1223R:G 0 [Edges] 0 {'0'1140R:C -> '0'1141R:U: adjacent_5p upward } 0 1 {'0'1141R:U -> '0'1140R:C: adjacent_3p downward } 0 2 {'0'1140R:C -> '0'1223R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1223R:G -> '0'1140R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1141R:U -> '0'1142R:C: adjacent_5p } 0 5 {'0'1142R:C -> '0'1141R:U: adjacent_3p } 0 6 {'0'1141R:U -> '0'1222R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1222R:A -> '0'1141R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1142R:C -> '0'1143R:G: adjacent_5p } 0 9 {'0'1143R:G -> '0'1142R:C: adjacent_3p } 0 10 {'0'1142R:C -> '0'1221R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1221R:G -> '0'1142R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1143R:G -> '0'1220R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {'0'1220R:U -> '0'1143R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {'0'1143R:G -> '0'1221R:G: outward } 0 15 {'0'1221R:G -> '0'1143R:G: outward } 0 16 {'0'1220R:U -> '0'1221R:G: adjacent_5p } 0 17 {'0'1221R:G -> '0'1220R:U: adjacent_3p } 0 18 {'0'1221R:G -> '0'1222R:A: adjacent_5p upward } 0 19 {'0'1222R:A -> '0'1221R:G: adjacent_3p downward } 0 20 {'0'1222R:A -> '0'1223R:G: adjacent_5p upward } 0 21 {'0'1223R:G -> '0'1222R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1141R:U 0 1 '0'1142R:C 0 2 '0'1143R:G 0 3 '0'1144R:A 0 4 '0'1219R:U 0 5 '0'1220R:U 0 6 '0'1221R:G 0 7 '0'1222R:A 0 [Edges] 0 {'0'1141R:U -> '0'1142R:C: adjacent_5p } 0 1 {'0'1142R:C -> '0'1141R:U: adjacent_3p } 0 2 {'0'1141R:U -> '0'1222R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1222R:A -> '0'1141R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1142R:C -> '0'1143R:G: adjacent_5p } 0 5 {'0'1143R:G -> '0'1142R:C: adjacent_3p } 0 6 {'0'1142R:C -> '0'1221R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1221R:G -> '0'1142R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1143R:G -> '0'1144R:A: adjacent_5p upward } 0 9 {'0'1144R:A -> '0'1143R:G: adjacent_3p downward } 0 10 {'0'1143R:G -> '0'1220R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'1220R:U -> '0'1143R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'1143R:G -> '0'1221R:G: outward } 0 13 {'0'1221R:G -> '0'1143R:G: outward } 0 14 {'0'1144R:A -> '0'1219R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1219R:U -> '0'1144R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1219R:U -> '0'1220R:U: adjacent_5p upward } 0 17 {'0'1220R:U -> '0'1219R:U: adjacent_3p downward } 0 18 {'0'1220R:U -> '0'1221R:G: adjacent_5p } 0 19 {'0'1221R:G -> '0'1220R:U: adjacent_3p } 0 20 {'0'1221R:G -> '0'1222R:A: adjacent_5p upward } 0 21 {'0'1222R:A -> '0'1221R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1142R:C 0 1 '0'1143R:G 0 2 '0'1144R:A 0 3 '0'1145R:G 0 4 '0'1218R:U 0 5 '0'1219R:U 0 6 '0'1220R:U 0 7 '0'1221R:G 0 [Edges] 0 {'0'1142R:C -> '0'1143R:G: adjacent_5p } 0 1 {'0'1143R:G -> '0'1142R:C: adjacent_3p } 0 2 {'0'1142R:C -> '0'1221R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1221R:G -> '0'1142R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1143R:G -> '0'1144R:A: adjacent_5p upward } 0 5 {'0'1144R:A -> '0'1143R:G: adjacent_3p downward } 0 6 {'0'1143R:G -> '0'1220R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'1220R:U -> '0'1143R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'1143R:G -> '0'1221R:G: outward } 0 9 {'0'1221R:G -> '0'1143R:G: outward } 0 10 {'0'1144R:A -> '0'1145R:G: adjacent_5p upward } 0 11 {'0'1145R:G -> '0'1144R:A: adjacent_3p downward } 0 12 {'0'1144R:A -> '0'1219R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1219R:U -> '0'1144R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1145R:G -> '0'1218R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {'0'1218R:U -> '0'1145R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {'0'1218R:U -> '0'1219R:U: adjacent_5p } 0 17 {'0'1219R:U -> '0'1218R:U: adjacent_3p } 0 18 {'0'1219R:U -> '0'1220R:U: adjacent_5p upward } 0 19 {'0'1220R:U -> '0'1219R:U: adjacent_3p downward } 0 20 {'0'1220R:U -> '0'1221R:G: adjacent_5p } 0 21 {'0'1221R:G -> '0'1220R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1143R:G 0 1 '0'1144R:A 0 2 '0'1145R:G 0 3 '0'1146R:C 0 4 '0'1217R:G 0 5 '0'1218R:U 0 6 '0'1219R:U 0 7 '0'1220R:U 0 [Edges] 0 {'0'1143R:G -> '0'1144R:A: adjacent_5p upward } 0 1 {'0'1144R:A -> '0'1143R:G: adjacent_3p downward } 0 2 {'0'1143R:G -> '0'1220R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'1220R:U -> '0'1143R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'1144R:A -> '0'1145R:G: adjacent_5p upward } 0 5 {'0'1145R:G -> '0'1144R:A: adjacent_3p downward } 0 6 {'0'1144R:A -> '0'1219R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1219R:U -> '0'1144R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1145R:G -> '0'1146R:C: adjacent_5p upward } 0 9 {'0'1146R:C -> '0'1145R:G: adjacent_3p downward } 0 10 {'0'1145R:G -> '0'1218R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'1218R:U -> '0'1145R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'1146R:C -> '0'1217R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1217R:G -> '0'1146R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1217R:G -> '0'1218R:U: adjacent_5p upward } 0 15 {'0'1218R:U -> '0'1217R:G: adjacent_3p downward } 0 16 {'0'1218R:U -> '0'1219R:U: adjacent_5p } 0 17 {'0'1219R:U -> '0'1218R:U: adjacent_3p } 0 18 {'0'1219R:U -> '0'1220R:U: adjacent_5p upward } 0 19 {'0'1220R:U -> '0'1219R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1144R:A 0 1 '0'1145R:G 0 2 '0'1146R:C 0 3 '0'1147R:C 0 4 '0'1216R:G 0 5 '0'1217R:G 0 6 '0'1218R:U 0 7 '0'1219R:U 0 [Edges] 0 {'0'1144R:A -> '0'1145R:G: adjacent_5p upward } 0 1 {'0'1145R:G -> '0'1144R:A: adjacent_3p downward } 0 2 {'0'1144R:A -> '0'1219R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1219R:U -> '0'1144R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1145R:G -> '0'1146R:C: adjacent_5p upward } 0 5 {'0'1146R:C -> '0'1145R:G: adjacent_3p downward } 0 6 {'0'1145R:G -> '0'1218R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'1218R:U -> '0'1145R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'1146R:C -> '0'1147R:C: adjacent_5p upward } 0 9 {'0'1147R:C -> '0'1146R:C: adjacent_3p downward } 0 10 {'0'1146R:C -> '0'1217R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1217R:G -> '0'1146R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1147R:C -> '0'1216R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1216R:G -> '0'1147R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1216R:G -> '0'1217R:G: adjacent_5p upward } 0 15 {'0'1217R:G -> '0'1216R:G: adjacent_3p downward } 0 16 {'0'1217R:G -> '0'1218R:U: adjacent_5p upward } 0 17 {'0'1218R:U -> '0'1217R:G: adjacent_3p downward } 0 18 {'0'1218R:U -> '0'1219R:U: adjacent_5p } 0 19 {'0'1219R:U -> '0'1218R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1154R:A 0 1 '0'1155R:G 0 2 '0'1156R:C 0 3 '0'1157R:C 0 4 '0'1210R:G 0 5 '0'1211R:G 0 6 '0'1212R:C 0 7 '0'1213R:C 0 [Edges] 0 {'0'1154R:A -> '0'1155R:G: adjacent_5p upward } 0 1 {'0'1155R:G -> '0'1154R:A: adjacent_3p downward } 0 2 {'0'1154R:A -> '0'1213R:C: pairing antiparallel trans one_hbond 78 Wh/Ws } 0 3 {'0'1213R:C -> '0'1154R:A: pairing antiparallel trans one_hbond 78 Ws/Wh } 0 4 {'0'1155R:G -> '0'1156R:C: adjacent_5p upward } 0 5 {'0'1156R:C -> '0'1155R:G: adjacent_3p downward } 0 6 {'0'1155R:G -> '0'1212R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1212R:C -> '0'1155R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1156R:C -> '0'1157R:C: adjacent_5p upward } 0 9 {'0'1157R:C -> '0'1156R:C: adjacent_3p downward } 0 10 {'0'1156R:C -> '0'1211R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1211R:G -> '0'1156R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1157R:C -> '0'1210R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1210R:G -> '0'1157R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1210R:G -> '0'1211R:G: adjacent_5p upward } 0 15 {'0'1211R:G -> '0'1210R:G: adjacent_3p downward } 0 16 {'0'1211R:G -> '0'1212R:C: adjacent_5p upward } 0 17 {'0'1212R:C -> '0'1211R:G: adjacent_3p downward } 0 18 {'0'1212R:C -> '0'1213R:C: adjacent_5p upward } 0 19 {'0'1213R:C -> '0'1212R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1155R:G 0 1 '0'1156R:C 0 2 '0'1157R:C 0 3 '0'1158R:G 0 4 '0'1209R:C 0 5 '0'1210R:G 0 6 '0'1211R:G 0 7 '0'1212R:C 0 [Edges] 0 {'0'1155R:G -> '0'1156R:C: adjacent_5p upward } 0 1 {'0'1156R:C -> '0'1155R:G: adjacent_3p downward } 0 2 {'0'1155R:G -> '0'1212R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1212R:C -> '0'1155R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1156R:C -> '0'1157R:C: adjacent_5p upward } 0 5 {'0'1157R:C -> '0'1156R:C: adjacent_3p downward } 0 6 {'0'1156R:C -> '0'1211R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1211R:G -> '0'1156R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1157R:C -> '0'1158R:G: adjacent_5p upward } 0 9 {'0'1158R:G -> '0'1157R:C: adjacent_3p downward } 0 10 {'0'1157R:C -> '0'1210R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1210R:G -> '0'1157R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1158R:G -> '0'1209R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1209R:C -> '0'1158R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1158R:G -> '0'1210R:G: outward } 0 15 {'0'1210R:G -> '0'1158R:G: outward } 0 16 {'0'1209R:C -> '0'1210R:G: adjacent_5p upward } 0 17 {'0'1210R:G -> '0'1209R:C: adjacent_3p downward } 0 18 {'0'1210R:G -> '0'1211R:G: adjacent_5p upward } 0 19 {'0'1211R:G -> '0'1210R:G: adjacent_3p downward } 0 20 {'0'1211R:G -> '0'1212R:C: adjacent_5p upward } 0 21 {'0'1212R:C -> '0'1211R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1156R:C 0 1 '0'1157R:C 0 2 '0'1158R:G 0 3 '0'1159R:G 0 4 '0'1208R:C 0 5 '0'1209R:C 0 6 '0'1210R:G 0 7 '0'1211R:G 0 [Edges] 0 {'0'1156R:C -> '0'1157R:C: adjacent_5p upward } 0 1 {'0'1157R:C -> '0'1156R:C: adjacent_3p downward } 0 2 {'0'1156R:C -> '0'1211R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1211R:G -> '0'1156R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1157R:C -> '0'1158R:G: adjacent_5p upward } 0 5 {'0'1158R:G -> '0'1157R:C: adjacent_3p downward } 0 6 {'0'1157R:C -> '0'1210R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1210R:G -> '0'1157R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1158R:G -> '0'1159R:G: adjacent_5p upward } 0 9 {'0'1159R:G -> '0'1158R:G: adjacent_3p downward } 0 10 {'0'1158R:G -> '0'1209R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1209R:C -> '0'1158R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1158R:G -> '0'1210R:G: outward } 0 13 {'0'1210R:G -> '0'1158R:G: outward } 0 14 {'0'1159R:G -> '0'1208R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1208R:C -> '0'1159R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1208R:C -> '0'1209R:C: adjacent_5p } 0 17 {'0'1209R:C -> '0'1208R:C: adjacent_3p } 0 18 {'0'1209R:C -> '0'1210R:G: adjacent_5p upward } 0 19 {'0'1210R:G -> '0'1209R:C: adjacent_3p downward } 0 20 {'0'1210R:G -> '0'1211R:G: adjacent_5p upward } 0 21 {'0'1211R:G -> '0'1210R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1157R:C 0 1 '0'1158R:G 0 2 '0'1159R:G 0 3 '0'1160R:G 0 4 '0'1207R:A 0 5 '0'1208R:C 0 6 '0'1209R:C 0 7 '0'1210R:G 0 [Edges] 0 {'0'1157R:C -> '0'1158R:G: adjacent_5p upward } 0 1 {'0'1158R:G -> '0'1157R:C: adjacent_3p downward } 0 2 {'0'1157R:C -> '0'1210R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1210R:G -> '0'1157R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1158R:G -> '0'1159R:G: adjacent_5p upward } 0 5 {'0'1159R:G -> '0'1158R:G: adjacent_3p downward } 0 6 {'0'1158R:G -> '0'1209R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1209R:C -> '0'1158R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1158R:G -> '0'1210R:G: outward } 0 9 {'0'1210R:G -> '0'1158R:G: outward } 0 10 {'0'1159R:G -> '0'1160R:G: adjacent_5p upward } 0 11 {'0'1160R:G -> '0'1159R:G: adjacent_3p downward } 0 12 {'0'1159R:G -> '0'1208R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1208R:C -> '0'1159R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1160R:G -> '0'1207R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 15 {'0'1207R:A -> '0'1160R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 16 {'0'1207R:A -> '0'1208R:C: adjacent_5p upward } 0 17 {'0'1208R:C -> '0'1207R:A: adjacent_3p downward } 0 18 {'0'1208R:C -> '0'1209R:C: adjacent_5p } 0 19 {'0'1209R:C -> '0'1208R:C: adjacent_3p } 0 20 {'0'1209R:C -> '0'1210R:G: adjacent_5p upward } 0 21 {'0'1210R:G -> '0'1209R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1166R:A 0 1 '0'1167R:G 0 2 '0'1168R:C 0 3 '0'1169R:U 0 4 '0'1177R:A 0 5 '0'1178R:G 0 6 '0'1179R:C 0 7 '0'1180R:U 0 [Edges] 0 {'0'1166R:A -> '0'1167R:G: adjacent_5p upward } 0 1 {'0'1167R:G -> '0'1166R:A: adjacent_3p downward } 0 2 {'0'1166R:A -> '0'1180R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {'0'1180R:U -> '0'1166R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {'0'1167R:G -> '0'1168R:C: adjacent_5p upward } 0 5 {'0'1168R:C -> '0'1167R:G: adjacent_3p downward } 0 6 {'0'1167R:G -> '0'1179R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1179R:C -> '0'1167R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1168R:C -> '0'1169R:U: adjacent_5p upward } 0 9 {'0'1169R:U -> '0'1168R:C: adjacent_3p downward } 0 10 {'0'1168R:C -> '0'1178R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1178R:G -> '0'1168R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1169R:U -> '0'1177R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 13 {'0'1177R:A -> '0'1169R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 14 {'0'1177R:A -> '0'1178R:G: adjacent_5p upward } 0 15 {'0'1178R:G -> '0'1177R:A: adjacent_3p downward } 0 16 {'0'1178R:G -> '0'1179R:C: adjacent_5p upward } 0 17 {'0'1179R:C -> '0'1178R:G: adjacent_3p downward } 0 18 {'0'1179R:C -> '0'1180R:U: adjacent_5p upward } 0 19 {'0'1180R:U -> '0'1179R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1270R:U 0 1 '0'1271R:A 0 2 '0'1272R:C 0 3 '0'1273R:C 0 4 '0'1283R:G 0 5 '0'1284R:G 0 6 '0'1285R:U 0 7 '0'1286R:A 0 [Edges] 0 {'0'1270R:U -> '0'1271R:A: adjacent_5p } 0 1 {'0'1271R:A -> '0'1270R:U: adjacent_3p } 0 2 {'0'1270R:U -> '0'1286R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1286R:A -> '0'1270R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1271R:A -> '0'1272R:C: adjacent_5p upward } 0 5 {'0'1272R:C -> '0'1271R:A: adjacent_3p downward } 0 6 {'0'1271R:A -> '0'1285R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1285R:U -> '0'1271R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1271R:A -> '0'1286R:A: outward } 0 9 {'0'1286R:A -> '0'1271R:A: outward } 0 10 {'0'1272R:C -> '0'1273R:C: adjacent_5p upward } 0 11 {'0'1273R:C -> '0'1272R:C: adjacent_3p downward } 0 12 {'0'1272R:C -> '0'1284R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1284R:G -> '0'1272R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1273R:C -> '0'1283R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1283R:G -> '0'1273R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1283R:G -> '0'1284R:G: adjacent_5p upward } 0 17 {'0'1284R:G -> '0'1283R:G: adjacent_3p downward } 0 18 {'0'1284R:G -> '0'1285R:U: adjacent_5p upward } 0 19 {'0'1285R:U -> '0'1284R:G: adjacent_3p downward } 0 20 {'0'1285R:U -> '0'1286R:A: adjacent_5p upward } 0 21 {'0'1286R:A -> '0'1285R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1271R:A 0 1 '0'1272R:C 0 2 '0'1273R:C 0 3 '0'1274R:A 0 4 '0'1282R:U 0 5 '0'1283R:G 0 6 '0'1284R:G 0 7 '0'1285R:U 0 [Edges] 0 {'0'1271R:A -> '0'1272R:C: adjacent_5p upward } 0 1 {'0'1272R:C -> '0'1271R:A: adjacent_3p downward } 0 2 {'0'1271R:A -> '0'1285R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1285R:U -> '0'1271R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1272R:C -> '0'1273R:C: adjacent_5p upward } 0 5 {'0'1273R:C -> '0'1272R:C: adjacent_3p downward } 0 6 {'0'1272R:C -> '0'1284R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1284R:G -> '0'1272R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1273R:C -> '0'1274R:A: adjacent_5p upward } 0 9 {'0'1274R:A -> '0'1273R:C: adjacent_3p downward } 0 10 {'0'1273R:C -> '0'1283R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1283R:G -> '0'1273R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1274R:A -> '0'1282R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1282R:U -> '0'1274R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1274R:A -> '0'1283R:G: outward } 0 15 {'0'1283R:G -> '0'1274R:A: outward } 0 16 {'0'1282R:U -> '0'1283R:G: adjacent_5p upward } 0 17 {'0'1283R:G -> '0'1282R:U: adjacent_3p downward } 0 18 {'0'1283R:G -> '0'1284R:G: adjacent_5p upward } 0 19 {'0'1284R:G -> '0'1283R:G: adjacent_3p downward } 0 20 {'0'1284R:G -> '0'1285R:U: adjacent_5p upward } 0 21 {'0'1285R:U -> '0'1284R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1272R:C 0 1 '0'1273R:C 0 2 '0'1274R:A 0 3 '0'1275R:C 0 4 '0'1281R:C 0 5 '0'1282R:U 0 6 '0'1283R:G 0 7 '0'1284R:G 0 [Edges] 0 {'0'1272R:C -> '0'1273R:C: adjacent_5p upward } 0 1 {'0'1273R:C -> '0'1272R:C: adjacent_3p downward } 0 2 {'0'1272R:C -> '0'1284R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1284R:G -> '0'1272R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1273R:C -> '0'1274R:A: adjacent_5p upward } 0 5 {'0'1274R:A -> '0'1273R:C: adjacent_3p downward } 0 6 {'0'1273R:C -> '0'1283R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1283R:G -> '0'1273R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1274R:A -> '0'1275R:C: adjacent_5p upward } 0 9 {'0'1275R:C -> '0'1274R:A: adjacent_3p downward } 0 10 {'0'1274R:A -> '0'1282R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1282R:U -> '0'1274R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1274R:A -> '0'1283R:G: outward } 0 13 {'0'1283R:G -> '0'1274R:A: outward } 0 14 {'0'1275R:C -> '0'1281R:C: pairing antiparallel cis 137 Ww/Bh } 0 15 {'0'1281R:C -> '0'1275R:C: pairing antiparallel cis 137 Bh/Ww } 0 16 {'0'1281R:C -> '0'1282R:U: adjacent_5p upward } 0 17 {'0'1282R:U -> '0'1281R:C: adjacent_3p downward } 0 18 {'0'1282R:U -> '0'1283R:G: adjacent_5p upward } 0 19 {'0'1283R:G -> '0'1282R:U: adjacent_3p downward } 0 20 {'0'1283R:G -> '0'1284R:G: adjacent_5p upward } 0 21 {'0'1284R:G -> '0'1283R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1273R:C 0 1 '0'1274R:A 0 2 '0'1275R:C 0 3 '0'1276R:U 0 4 '0'1280R:A 0 5 '0'1281R:C 0 6 '0'1282R:U 0 7 '0'1283R:G 0 [Edges] 0 {'0'1273R:C -> '0'1274R:A: adjacent_5p upward } 0 1 {'0'1274R:A -> '0'1273R:C: adjacent_3p downward } 0 2 {'0'1273R:C -> '0'1283R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1283R:G -> '0'1273R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1274R:A -> '0'1275R:C: adjacent_5p upward } 0 5 {'0'1275R:C -> '0'1274R:A: adjacent_3p downward } 0 6 {'0'1274R:A -> '0'1282R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1282R:U -> '0'1274R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1274R:A -> '0'1283R:G: outward } 0 9 {'0'1283R:G -> '0'1274R:A: outward } 0 10 {'0'1275R:C -> '0'1276R:U: adjacent_5p upward } 0 11 {'0'1276R:U -> '0'1275R:C: adjacent_3p downward } 0 12 {'0'1275R:C -> '0'1281R:C: pairing antiparallel cis 137 Ww/Bh } 0 13 {'0'1281R:C -> '0'1275R:C: pairing antiparallel cis 137 Bh/Ww } 0 14 {'0'1276R:U -> '0'1280R:A: pairing antiparallel trans one_hbond 45 Ss/Hw } 0 15 {'0'1280R:A -> '0'1276R:U: pairing antiparallel trans one_hbond 45 Hw/Ss } 0 16 {'0'1280R:A -> '0'1281R:C: adjacent_5p upward } 0 17 {'0'1281R:C -> '0'1280R:A: adjacent_3p downward } 0 18 {'0'1281R:C -> '0'1282R:U: adjacent_5p upward } 0 19 {'0'1282R:U -> '0'1281R:C: adjacent_3p downward } 0 20 {'0'1282R:U -> '0'1283R:G: adjacent_5p upward } 0 21 {'0'1283R:G -> '0'1282R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1303R:C 0 1 '0'1304R:U 0 2 '0'1305R:C 0 3 '0'1306R:U 0 4 '0'1348R:A 0 5 '0'1349R:G 0 6 '0'1350R:U 0 7 '0'1351R:G 0 [Edges] 0 {'0'1303R:C -> '0'1304R:U: adjacent_5p } 0 1 {'0'1304R:U -> '0'1303R:C: adjacent_3p } 0 2 {'0'1303R:C -> '0'1351R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1351R:G -> '0'1303R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1304R:U -> '0'1305R:C: adjacent_5p upward } 0 5 {'0'1305R:C -> '0'1304R:U: adjacent_3p downward } 0 6 {'0'1304R:U -> '0'1350R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {'0'1350R:U -> '0'1304R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {'0'1305R:C -> '0'1306R:U: adjacent_5p } 0 9 {'0'1306R:U -> '0'1305R:C: adjacent_3p } 0 10 {'0'1305R:C -> '0'1349R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1349R:G -> '0'1305R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1306R:U -> '0'1348R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1348R:A -> '0'1306R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1348R:A -> '0'1349R:G: adjacent_5p upward } 0 15 {'0'1349R:G -> '0'1348R:A: adjacent_3p downward } 0 16 {'0'1349R:G -> '0'1350R:U: adjacent_5p upward } 0 17 {'0'1350R:U -> '0'1349R:G: adjacent_3p downward } 0 18 {'0'1350R:U -> '0'1351R:G: adjacent_5p upward } 0 19 {'0'1351R:G -> '0'1350R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1304R:U 0 1 '0'1305R:C 0 2 '0'1306R:U 0 3 '0'1307R:A 0 4 '0'1347R:U 0 5 '0'1348R:A 0 6 '0'1349R:G 0 7 '0'1350R:U 0 [Edges] 0 {'0'1304R:U -> '0'1305R:C: adjacent_5p upward } 0 1 {'0'1305R:C -> '0'1304R:U: adjacent_3p downward } 0 2 {'0'1304R:U -> '0'1350R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {'0'1350R:U -> '0'1304R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {'0'1305R:C -> '0'1306R:U: adjacent_5p } 0 5 {'0'1306R:U -> '0'1305R:C: adjacent_3p } 0 6 {'0'1305R:C -> '0'1349R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1349R:G -> '0'1305R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1306R:U -> '0'1307R:A: adjacent_5p upward } 0 9 {'0'1307R:A -> '0'1306R:U: adjacent_3p downward } 0 10 {'0'1306R:U -> '0'1348R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1348R:A -> '0'1306R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1307R:A -> '0'1347R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1347R:U -> '0'1307R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1307R:A -> '0'1348R:A: outward } 0 15 {'0'1348R:A -> '0'1307R:A: outward } 0 16 {'0'1347R:U -> '0'1348R:A: adjacent_5p upward } 0 17 {'0'1348R:A -> '0'1347R:U: adjacent_3p downward } 0 18 {'0'1348R:A -> '0'1349R:G: adjacent_5p upward } 0 19 {'0'1349R:G -> '0'1348R:A: adjacent_3p downward } 0 20 {'0'1349R:G -> '0'1350R:U: adjacent_5p upward } 0 21 {'0'1350R:U -> '0'1349R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1305R:C 0 1 '0'1306R:U 0 2 '0'1307R:A 0 3 '0'1308R:A 0 4 '0'1346R:U 0 5 '0'1347R:U 0 6 '0'1348R:A 0 7 '0'1349R:G 0 [Edges] 0 {'0'1305R:C -> '0'1306R:U: adjacent_5p } 0 1 {'0'1306R:U -> '0'1305R:C: adjacent_3p } 0 2 {'0'1305R:C -> '0'1349R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1349R:G -> '0'1305R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1306R:U -> '0'1307R:A: adjacent_5p upward } 0 5 {'0'1307R:A -> '0'1306R:U: adjacent_3p downward } 0 6 {'0'1306R:U -> '0'1348R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1348R:A -> '0'1306R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1307R:A -> '0'1308R:A: adjacent_5p upward } 0 9 {'0'1308R:A -> '0'1307R:A: adjacent_3p downward } 0 10 {'0'1307R:A -> '0'1347R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1347R:U -> '0'1307R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1307R:A -> '0'1348R:A: outward } 0 13 {'0'1348R:A -> '0'1307R:A: outward } 0 14 {'0'1308R:A -> '0'1346R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1346R:U -> '0'1308R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1346R:U -> '0'1347R:U: adjacent_5p upward } 0 17 {'0'1347R:U -> '0'1346R:U: adjacent_3p downward } 0 18 {'0'1347R:U -> '0'1348R:A: adjacent_5p upward } 0 19 {'0'1348R:A -> '0'1347R:U: adjacent_3p downward } 0 20 {'0'1348R:A -> '0'1349R:G: adjacent_5p upward } 0 21 {'0'1349R:G -> '0'1348R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1306R:U 0 1 '0'1307R:A 0 2 '0'1308R:A 0 3 '0'1309R:U 0 4 '0'1345R:A 0 5 '0'1346R:U 0 6 '0'1347R:U 0 7 '0'1348R:A 0 [Edges] 0 {'0'1306R:U -> '0'1307R:A: adjacent_5p upward } 0 1 {'0'1307R:A -> '0'1306R:U: adjacent_3p downward } 0 2 {'0'1306R:U -> '0'1348R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1348R:A -> '0'1306R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1307R:A -> '0'1308R:A: adjacent_5p upward } 0 5 {'0'1308R:A -> '0'1307R:A: adjacent_3p downward } 0 6 {'0'1307R:A -> '0'1347R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1347R:U -> '0'1307R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1307R:A -> '0'1348R:A: outward } 0 9 {'0'1348R:A -> '0'1307R:A: outward } 0 10 {'0'1308R:A -> '0'1309R:U: adjacent_5p upward } 0 11 {'0'1309R:U -> '0'1308R:A: adjacent_3p downward } 0 12 {'0'1308R:A -> '0'1346R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1346R:U -> '0'1308R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1309R:U -> '0'1345R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1345R:A -> '0'1309R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1345R:A -> '0'1346R:U: adjacent_5p upward } 0 17 {'0'1346R:U -> '0'1345R:A: adjacent_3p downward } 0 18 {'0'1346R:U -> '0'1347R:U: adjacent_5p upward } 0 19 {'0'1347R:U -> '0'1346R:U: adjacent_3p downward } 0 20 {'0'1347R:U -> '0'1348R:A: adjacent_5p upward } 0 21 {'0'1348R:A -> '0'1347R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1307R:A 0 1 '0'1308R:A 0 2 '0'1309R:U 0 3 '0'1310R:U 0 4 '0'1344R:G 0 5 '0'1345R:A 0 6 '0'1346R:U 0 7 '0'1347R:U 0 [Edges] 0 {'0'1307R:A -> '0'1308R:A: adjacent_5p upward } 0 1 {'0'1308R:A -> '0'1307R:A: adjacent_3p downward } 0 2 {'0'1307R:A -> '0'1347R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1347R:U -> '0'1307R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1308R:A -> '0'1309R:U: adjacent_5p upward } 0 5 {'0'1309R:U -> '0'1308R:A: adjacent_3p downward } 0 6 {'0'1308R:A -> '0'1346R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1346R:U -> '0'1308R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1309R:U -> '0'1310R:U: adjacent_5p upward } 0 9 {'0'1310R:U -> '0'1309R:U: adjacent_3p downward } 0 10 {'0'1309R:U -> '0'1345R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1345R:A -> '0'1309R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1310R:U -> '0'1344R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {'0'1344R:G -> '0'1310R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {'0'1344R:G -> '0'1345R:A: adjacent_5p upward } 0 15 {'0'1345R:A -> '0'1344R:G: adjacent_3p downward } 0 16 {'0'1345R:A -> '0'1346R:U: adjacent_5p upward } 0 17 {'0'1346R:U -> '0'1345R:A: adjacent_3p downward } 0 18 {'0'1346R:U -> '0'1347R:U: adjacent_5p upward } 0 19 {'0'1347R:U -> '0'1346R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1308R:A 0 1 '0'1309R:U 0 2 '0'1310R:U 0 3 '0'1311R:G 0 4 '0'1343R:C 0 5 '0'1344R:G 0 6 '0'1345R:A 0 7 '0'1346R:U 0 [Edges] 0 {'0'1308R:A -> '0'1309R:U: adjacent_5p upward } 0 1 {'0'1309R:U -> '0'1308R:A: adjacent_3p downward } 0 2 {'0'1308R:A -> '0'1346R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1346R:U -> '0'1308R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1309R:U -> '0'1310R:U: adjacent_5p upward } 0 5 {'0'1310R:U -> '0'1309R:U: adjacent_3p downward } 0 6 {'0'1309R:U -> '0'1345R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1345R:A -> '0'1309R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1310R:U -> '0'1311R:G: adjacent_5p } 0 9 {'0'1311R:G -> '0'1310R:U: adjacent_3p } 0 10 {'0'1310R:U -> '0'1344R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {'0'1344R:G -> '0'1310R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {'0'1311R:G -> '0'1343R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1343R:C -> '0'1311R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1311R:G -> '0'1344R:G: outward } 0 15 {'0'1344R:G -> '0'1311R:G: outward } 0 16 {'0'1343R:C -> '0'1344R:G: adjacent_5p } 0 17 {'0'1344R:G -> '0'1343R:C: adjacent_3p } 0 18 {'0'1344R:G -> '0'1345R:A: adjacent_5p upward } 0 19 {'0'1345R:A -> '0'1344R:G: adjacent_3p downward } 0 20 {'0'1345R:A -> '0'1346R:U: adjacent_5p upward } 0 21 {'0'1346R:U -> '0'1345R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1309R:U 0 1 '0'1310R:U 0 2 '0'1311R:G 0 3 '0'1312R:G 0 4 '0'1342R:C 0 5 '0'1343R:C 0 6 '0'1344R:G 0 7 '0'1345R:A 0 [Edges] 0 {'0'1309R:U -> '0'1310R:U: adjacent_5p upward } 0 1 {'0'1310R:U -> '0'1309R:U: adjacent_3p downward } 0 2 {'0'1309R:U -> '0'1345R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1345R:A -> '0'1309R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1310R:U -> '0'1311R:G: adjacent_5p } 0 5 {'0'1311R:G -> '0'1310R:U: adjacent_3p } 0 6 {'0'1310R:U -> '0'1344R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'1344R:G -> '0'1310R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'1311R:G -> '0'1312R:G: adjacent_5p upward } 0 9 {'0'1312R:G -> '0'1311R:G: adjacent_3p downward } 0 10 {'0'1311R:G -> '0'1343R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1343R:C -> '0'1311R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1311R:G -> '0'1344R:G: outward } 0 13 {'0'1344R:G -> '0'1311R:G: outward } 0 14 {'0'1312R:G -> '0'1342R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1342R:C -> '0'1312R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1342R:C -> '0'1343R:C: adjacent_5p } 0 17 {'0'1343R:C -> '0'1342R:C: adjacent_3p } 0 18 {'0'1343R:C -> '0'1344R:G: adjacent_5p } 0 19 {'0'1344R:G -> '0'1343R:C: adjacent_3p } 0 20 {'0'1344R:G -> '0'1345R:A: adjacent_5p upward } 0 21 {'0'1345R:A -> '0'1344R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1316R:G 0 1 '0'1317R:A 0 2 '0'1318R:A 0 3 '0'1319R:G 0 4 '0'1338R:U 0 5 '0'1339R:G 0 6 '0'1340R:G 0 7 '0'1341R:A 0 [Edges] 0 {'0'1316R:G -> '0'1317R:A: adjacent_5p } 0 1 {'0'1317R:A -> '0'1316R:G: adjacent_3p } 0 2 {'0'1316R:G -> '0'1340R:G: inward } 0 3 {'0'1340R:G -> '0'1316R:G: inward } 0 4 {'0'1316R:G -> '0'1341R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {'0'1341R:A -> '0'1316R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {'0'1317R:A -> '0'1318R:A: adjacent_5p upward } 0 7 {'0'1318R:A -> '0'1317R:A: adjacent_3p downward } 0 8 {'0'1317R:A -> '0'1340R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 9 {'0'1340R:G -> '0'1317R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 10 {'0'1317R:A -> '0'1341R:A: outward } 0 11 {'0'1341R:A -> '0'1317R:A: outward } 0 12 {'0'1318R:A -> '0'1319R:G: adjacent_5p upward } 0 13 {'0'1319R:G -> '0'1318R:A: adjacent_3p downward } 0 14 {'0'1318R:A -> '0'1339R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {'0'1339R:G -> '0'1318R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {'0'1319R:G -> '0'1338R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 17 {'0'1338R:U -> '0'1319R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 18 {'0'1338R:U -> '0'1339R:G: adjacent_5p upward } 0 19 {'0'1339R:G -> '0'1338R:U: adjacent_3p downward } 0 20 {'0'1339R:G -> '0'1340R:G: adjacent_5p upward } 0 21 {'0'1340R:G -> '0'1339R:G: adjacent_3p downward } 0 22 {'0'1340R:G -> '0'1341R:A: adjacent_5p } 0 23 {'0'1341R:A -> '0'1340R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 18 . . 5 . . 15 . 19 . 20 . 6 3 9 . . . 21 . 22 7 5 11 . . . . 23 . [GraphModel] [Vertices] 0 '0'1317R:A 0 1 '0'1318R:A 0 2 '0'1319R:G 0 3 '0'1320R:U 0 4 '0'1337R:A 0 5 '0'1338R:U 0 6 '0'1339R:G 0 7 '0'1340R:G 0 [Edges] 0 {'0'1317R:A -> '0'1318R:A: adjacent_5p upward } 0 1 {'0'1318R:A -> '0'1317R:A: adjacent_3p downward } 0 2 {'0'1317R:A -> '0'1340R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 3 {'0'1340R:G -> '0'1317R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 4 {'0'1318R:A -> '0'1319R:G: adjacent_5p upward } 0 5 {'0'1319R:G -> '0'1318R:A: adjacent_3p downward } 0 6 {'0'1318R:A -> '0'1339R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {'0'1339R:G -> '0'1318R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {'0'1319R:G -> '0'1320R:U: adjacent_5p upward } 0 9 {'0'1320R:U -> '0'1319R:G: adjacent_3p downward } 0 10 {'0'1319R:G -> '0'1338R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'1338R:U -> '0'1319R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'1320R:U -> '0'1337R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1337R:A -> '0'1320R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1337R:A -> '0'1338R:U: adjacent_5p upward } 0 15 {'0'1338R:U -> '0'1337R:A: adjacent_3p downward } 0 16 {'0'1338R:U -> '0'1339R:G: adjacent_5p upward } 0 17 {'0'1339R:G -> '0'1338R:U: adjacent_3p downward } 0 18 {'0'1339R:G -> '0'1340R:G: adjacent_5p upward } 0 19 {'0'1340R:G -> '0'1339R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1318R:A 0 1 '0'1319R:G 0 2 '0'1320R:U 0 3 '0'1321R:A 0 4 '0'1336R:U 0 5 '0'1337R:A 0 6 '0'1338R:U 0 7 '0'1339R:G 0 [Edges] 0 {'0'1318R:A -> '0'1319R:G: adjacent_5p upward } 0 1 {'0'1319R:G -> '0'1318R:A: adjacent_3p downward } 0 2 {'0'1318R:A -> '0'1339R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'1339R:G -> '0'1318R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'1319R:G -> '0'1320R:U: adjacent_5p upward } 0 5 {'0'1320R:U -> '0'1319R:G: adjacent_3p downward } 0 6 {'0'1319R:G -> '0'1338R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'1338R:U -> '0'1319R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'1320R:U -> '0'1321R:A: adjacent_5p upward } 0 9 {'0'1321R:A -> '0'1320R:U: adjacent_3p downward } 0 10 {'0'1320R:U -> '0'1337R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1337R:A -> '0'1320R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1321R:A -> '0'1336R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1336R:U -> '0'1321R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1321R:A -> '0'1337R:A: outward } 0 15 {'0'1337R:A -> '0'1321R:A: outward } 0 16 {'0'1336R:U -> '0'1337R:A: adjacent_5p } 0 17 {'0'1337R:A -> '0'1336R:U: adjacent_3p } 0 18 {'0'1337R:A -> '0'1338R:U: adjacent_5p upward } 0 19 {'0'1338R:U -> '0'1337R:A: adjacent_3p downward } 0 20 {'0'1338R:U -> '0'1339R:G: adjacent_5p upward } 0 21 {'0'1339R:G -> '0'1338R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1319R:G 0 1 '0'1320R:U 0 2 '0'1321R:A 0 3 '0'1322R:G 0 4 '0'1335R:C 0 5 '0'1336R:U 0 6 '0'1337R:A 0 7 '0'1338R:U 0 [Edges] 0 {'0'1319R:G -> '0'1320R:U: adjacent_5p upward } 0 1 {'0'1320R:U -> '0'1319R:G: adjacent_3p downward } 0 2 {'0'1319R:G -> '0'1338R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'1338R:U -> '0'1319R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'1320R:U -> '0'1321R:A: adjacent_5p upward } 0 5 {'0'1321R:A -> '0'1320R:U: adjacent_3p downward } 0 6 {'0'1320R:U -> '0'1337R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1337R:A -> '0'1320R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1321R:A -> '0'1322R:G: adjacent_5p upward } 0 9 {'0'1322R:G -> '0'1321R:A: adjacent_3p downward } 0 10 {'0'1321R:A -> '0'1336R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1336R:U -> '0'1321R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1321R:A -> '0'1337R:A: outward } 0 13 {'0'1337R:A -> '0'1321R:A: outward } 0 14 {'0'1322R:G -> '0'1335R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1335R:C -> '0'1322R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1335R:C -> '0'1336R:U: adjacent_5p } 0 17 {'0'1336R:U -> '0'1335R:C: adjacent_3p } 0 18 {'0'1336R:U -> '0'1337R:A: adjacent_5p } 0 19 {'0'1337R:A -> '0'1336R:U: adjacent_3p } 0 20 {'0'1337R:A -> '0'1338R:U: adjacent_5p upward } 0 21 {'0'1338R:U -> '0'1337R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1320R:U 0 1 '0'1321R:A 0 2 '0'1322R:G 0 3 '0'1323R:G 0 4 '0'1334R:C 0 5 '0'1335R:C 0 6 '0'1336R:U 0 7 '0'1337R:A 0 [Edges] 0 {'0'1320R:U -> '0'1321R:A: adjacent_5p upward } 0 1 {'0'1321R:A -> '0'1320R:U: adjacent_3p downward } 0 2 {'0'1320R:U -> '0'1337R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1337R:A -> '0'1320R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1321R:A -> '0'1322R:G: adjacent_5p upward } 0 5 {'0'1322R:G -> '0'1321R:A: adjacent_3p downward } 0 6 {'0'1321R:A -> '0'1336R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1336R:U -> '0'1321R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1321R:A -> '0'1337R:A: outward } 0 9 {'0'1337R:A -> '0'1321R:A: outward } 0 10 {'0'1322R:G -> '0'1323R:G: adjacent_5p upward } 0 11 {'0'1323R:G -> '0'1322R:G: adjacent_3p downward } 0 12 {'0'1322R:G -> '0'1335R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1335R:C -> '0'1322R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1323R:G -> '0'1334R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1334R:C -> '0'1323R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1334R:C -> '0'1335R:C: adjacent_5p } 0 17 {'0'1335R:C -> '0'1334R:C: adjacent_3p } 0 18 {'0'1335R:C -> '0'1336R:U: adjacent_5p } 0 19 {'0'1336R:U -> '0'1335R:C: adjacent_3p } 0 20 {'0'1336R:U -> '0'1337R:A: adjacent_5p } 0 21 {'0'1337R:A -> '0'1336R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1321R:A 0 1 '0'1322R:G 0 2 '0'1323R:G 0 3 '0'1324R:G 0 4 '0'1333R:U 0 5 '0'1334R:C 0 6 '0'1335R:C 0 7 '0'1336R:U 0 [Edges] 0 {'0'1321R:A -> '0'1322R:G: adjacent_5p upward } 0 1 {'0'1322R:G -> '0'1321R:A: adjacent_3p downward } 0 2 {'0'1321R:A -> '0'1336R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1336R:U -> '0'1321R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1322R:G -> '0'1323R:G: adjacent_5p upward } 0 5 {'0'1323R:G -> '0'1322R:G: adjacent_3p downward } 0 6 {'0'1322R:G -> '0'1335R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1335R:C -> '0'1322R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1323R:G -> '0'1324R:G: adjacent_5p upward } 0 9 {'0'1324R:G -> '0'1323R:G: adjacent_3p downward } 0 10 {'0'1323R:G -> '0'1334R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1334R:C -> '0'1323R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1324R:G -> '0'1333R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {'0'1333R:U -> '0'1324R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {'0'1324R:G -> '0'1334R:C: outward } 0 15 {'0'1334R:C -> '0'1324R:G: outward } 0 16 {'0'1333R:U -> '0'1334R:C: adjacent_5p } 0 17 {'0'1334R:C -> '0'1333R:U: adjacent_3p } 0 18 {'0'1334R:C -> '0'1335R:C: adjacent_5p } 0 19 {'0'1335R:C -> '0'1334R:C: adjacent_3p } 0 20 {'0'1335R:C -> '0'1336R:U: adjacent_5p } 0 21 {'0'1336R:U -> '0'1335R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1322R:G 0 1 '0'1323R:G 0 2 '0'1324R:G 0 3 '0'1325R:G 0 4 '0'1332R:C 0 5 '0'1333R:U 0 6 '0'1334R:C 0 7 '0'1335R:C 0 [Edges] 0 {'0'1322R:G -> '0'1323R:G: adjacent_5p upward } 0 1 {'0'1323R:G -> '0'1322R:G: adjacent_3p downward } 0 2 {'0'1322R:G -> '0'1335R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1335R:C -> '0'1322R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1323R:G -> '0'1324R:G: adjacent_5p upward } 0 5 {'0'1324R:G -> '0'1323R:G: adjacent_3p downward } 0 6 {'0'1323R:G -> '0'1334R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1334R:C -> '0'1323R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1324R:G -> '0'1325R:G: adjacent_5p upward } 0 9 {'0'1325R:G -> '0'1324R:G: adjacent_3p downward } 0 10 {'0'1324R:G -> '0'1333R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'1333R:U -> '0'1324R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'1324R:G -> '0'1334R:C: outward } 0 13 {'0'1334R:C -> '0'1324R:G: outward } 0 14 {'0'1325R:G -> '0'1332R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1332R:C -> '0'1325R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1332R:C -> '0'1333R:U: adjacent_5p upward } 0 17 {'0'1333R:U -> '0'1332R:C: adjacent_3p downward } 0 18 {'0'1333R:U -> '0'1334R:C: adjacent_5p } 0 19 {'0'1334R:C -> '0'1333R:U: adjacent_3p } 0 20 {'0'1334R:C -> '0'1335R:C: adjacent_5p } 0 21 {'0'1335R:C -> '0'1334R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1323R:G 0 1 '0'1324R:G 0 2 '0'1325R:G 0 3 '0'1326R:U 0 4 '0'1331R:A 0 5 '0'1332R:C 0 6 '0'1333R:U 0 7 '0'1334R:C 0 [Edges] 0 {'0'1323R:G -> '0'1324R:G: adjacent_5p upward } 0 1 {'0'1324R:G -> '0'1323R:G: adjacent_3p downward } 0 2 {'0'1323R:G -> '0'1334R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1334R:C -> '0'1323R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1324R:G -> '0'1325R:G: adjacent_5p upward } 0 5 {'0'1325R:G -> '0'1324R:G: adjacent_3p downward } 0 6 {'0'1324R:G -> '0'1333R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'1333R:U -> '0'1324R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'1324R:G -> '0'1334R:C: outward } 0 9 {'0'1334R:C -> '0'1324R:G: outward } 0 10 {'0'1325R:G -> '0'1326R:U: adjacent_5p upward } 0 11 {'0'1326R:U -> '0'1325R:G: adjacent_3p downward } 0 12 {'0'1325R:G -> '0'1332R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1332R:C -> '0'1325R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1326R:U -> '0'1331R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1331R:A -> '0'1326R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1331R:A -> '0'1332R:C: adjacent_5p upward } 0 17 {'0'1332R:C -> '0'1331R:A: adjacent_3p downward } 0 18 {'0'1332R:C -> '0'1333R:U: adjacent_5p upward } 0 19 {'0'1333R:U -> '0'1332R:C: adjacent_3p downward } 0 20 {'0'1333R:U -> '0'1334R:C: adjacent_5p } 0 21 {'0'1334R:C -> '0'1333R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1324R:G 0 1 '0'1325R:G 0 2 '0'1326R:U 0 3 '0'1327R:G 0 4 '0'1330R:A 0 5 '0'1331R:A 0 6 '0'1332R:C 0 7 '0'1333R:U 0 [Edges] 0 {'0'1324R:G -> '0'1325R:G: adjacent_5p upward } 0 1 {'0'1325R:G -> '0'1324R:G: adjacent_3p downward } 0 2 {'0'1324R:G -> '0'1333R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'1333R:U -> '0'1324R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'1325R:G -> '0'1326R:U: adjacent_5p upward } 0 5 {'0'1326R:U -> '0'1325R:G: adjacent_3p downward } 0 6 {'0'1325R:G -> '0'1332R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1332R:C -> '0'1325R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1326R:U -> '0'1327R:G: adjacent_5p } 0 9 {'0'1327R:G -> '0'1326R:U: adjacent_3p } 0 10 {'0'1326R:U -> '0'1331R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1331R:A -> '0'1326R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1327R:G -> '0'1330R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {'0'1330R:A -> '0'1327R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {'0'1327R:G -> '0'1331R:A: outward } 0 15 {'0'1331R:A -> '0'1327R:G: outward } 0 16 {'0'1330R:A -> '0'1331R:A: adjacent_5p } 0 17 {'0'1331R:A -> '0'1330R:A: adjacent_3p } 0 18 {'0'1331R:A -> '0'1332R:C: adjacent_5p upward } 0 19 {'0'1332R:C -> '0'1331R:A: adjacent_3p downward } 0 20 {'0'1332R:C -> '0'1333R:U: adjacent_5p upward } 0 21 {'0'1333R:U -> '0'1332R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1366R:C 0 1 '0'1367R:A 0 2 '0'1368R:U 0 3 '0'1369R:A 0 4 '0'2055R:A 0 5 '0'2056R:C 0 6 '0'2057R:U 0 7 '0'2058R:G 0 [Edges] 0 {'0'1366R:C -> '0'1367R:A: adjacent_5p upward } 0 1 {'0'1367R:A -> '0'1366R:C: adjacent_3p downward } 0 2 {'0'1366R:C -> '0'2058R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2058R:G -> '0'1366R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1367R:A -> '0'1368R:U: adjacent_5p upward } 0 5 {'0'1368R:U -> '0'1367R:A: adjacent_3p downward } 0 6 {'0'1367R:A -> '0'2057R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2057R:U -> '0'1367R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1367R:A -> '0'2058R:G: outward } 0 9 {'0'2058R:G -> '0'1367R:A: outward } 0 10 {'0'1368R:U -> '0'1369R:A: adjacent_5p inward } 0 11 {'0'1369R:A -> '0'1368R:U: adjacent_3p inward } 0 12 {'0'1368R:U -> '0'2056R:C: pairing antiparallel trans one_hbond 97 Ss/Hw } 0 13 {'0'2056R:C -> '0'1368R:U: pairing antiparallel trans one_hbond 97 Hw/Ss } 0 14 {'0'1369R:A -> '0'2055R:A: pairing parallel trans II Hh/Hh } 0 15 {'0'2055R:A -> '0'1369R:A: pairing parallel trans II Hh/Hh } 0 16 {'0'2055R:A -> '0'2056R:C: adjacent_5p upward } 0 17 {'0'2056R:C -> '0'2055R:A: adjacent_3p downward } 0 18 {'0'2056R:C -> '0'2057R:U: adjacent_5p upward } 0 19 {'0'2057R:U -> '0'2056R:C: adjacent_3p downward } 0 20 {'0'2057R:U -> '0'2058R:G: adjacent_5p upward } 0 21 {'0'2058R:G -> '0'2057R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1371R:U 0 1 '0'1372R:A 0 2 '0'1373R:G 0 3 '0'1374R:C 0 4 '0'2051R:G 0 5 '0'2052R:U 0 6 '0'2053R:G 0 7 '0'2054R:A 0 [Edges] 0 {'0'1371R:U -> '0'1372R:A: adjacent_5p } 0 1 {'0'1372R:A -> '0'1371R:U: adjacent_3p } 0 2 {'0'1371R:U -> '0'2054R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {'0'2054R:A -> '0'1371R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {'0'1372R:A -> '0'1373R:G: adjacent_5p upward } 0 5 {'0'1373R:G -> '0'1372R:A: adjacent_3p downward } 0 6 {'0'1372R:A -> '0'2053R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 7 {'0'2053R:G -> '0'1372R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 8 {'0'1372R:A -> '0'2054R:A: outward } 0 9 {'0'2054R:A -> '0'1372R:A: outward } 0 10 {'0'1373R:G -> '0'1374R:C: adjacent_5p upward } 0 11 {'0'1374R:C -> '0'1373R:G: adjacent_3p downward } 0 12 {'0'1373R:G -> '0'2052R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {'0'2052R:U -> '0'1373R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {'0'1374R:C -> '0'2051R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2051R:G -> '0'1374R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2051R:G -> '0'2052R:U: adjacent_5p upward } 0 17 {'0'2052R:U -> '0'2051R:G: adjacent_3p downward } 0 18 {'0'2052R:U -> '0'2053R:G: adjacent_5p upward } 0 19 {'0'2053R:G -> '0'2052R:U: adjacent_3p downward } 0 20 {'0'2053R:G -> '0'2054R:A: adjacent_5p } 0 21 {'0'2054R:A -> '0'2053R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1381R:A 0 1 '0'1382R:G 0 2 '0'1383R:U 0 3 '0'1384R:C 0 4 '0'1398R:G 0 5 '0'1399R:A 0 6 '0'1400R:C 0 7 '0'1401R:G 0 [Edges] 0 {'0'1381R:A -> '0'1382R:G: adjacent_5p } 0 1 {'0'1382R:G -> '0'1381R:A: adjacent_3p } 0 2 {'0'1381R:A -> '0'1401R:G: pairing parallel trans one_hbond Bs/Ss } 0 3 {'0'1401R:G -> '0'1381R:A: pairing parallel trans one_hbond Ss/Bs } 0 4 {'0'1382R:G -> '0'1383R:U: adjacent_5p upward } 0 5 {'0'1383R:U -> '0'1382R:G: adjacent_3p downward } 0 6 {'0'1382R:G -> '0'1400R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1400R:C -> '0'1382R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1382R:G -> '0'1401R:G: outward } 0 9 {'0'1401R:G -> '0'1382R:G: outward } 0 10 {'0'1383R:U -> '0'1384R:C: adjacent_5p upward } 0 11 {'0'1384R:C -> '0'1383R:U: adjacent_3p downward } 0 12 {'0'1383R:U -> '0'1399R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1399R:A -> '0'1383R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1384R:C -> '0'1398R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1398R:G -> '0'1384R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1398R:G -> '0'1399R:A: adjacent_5p upward } 0 17 {'0'1399R:A -> '0'1398R:G: adjacent_3p downward } 0 18 {'0'1399R:A -> '0'1400R:C: adjacent_5p upward } 0 19 {'0'1400R:C -> '0'1399R:A: adjacent_3p downward } 0 20 {'0'1400R:C -> '0'1401R:G: adjacent_5p upward } 0 21 {'0'1401R:G -> '0'1400R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1382R:G 0 1 '0'1383R:U 0 2 '0'1384R:C 0 3 '0'1385R:G 0 4 '0'1397R:C 0 5 '0'1398R:G 0 6 '0'1399R:A 0 7 '0'1400R:C 0 [Edges] 0 {'0'1382R:G -> '0'1383R:U: adjacent_5p upward } 0 1 {'0'1383R:U -> '0'1382R:G: adjacent_3p downward } 0 2 {'0'1382R:G -> '0'1400R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1400R:C -> '0'1382R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1383R:U -> '0'1384R:C: adjacent_5p upward } 0 5 {'0'1384R:C -> '0'1383R:U: adjacent_3p downward } 0 6 {'0'1383R:U -> '0'1399R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1399R:A -> '0'1383R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1384R:C -> '0'1385R:G: adjacent_5p upward } 0 9 {'0'1385R:G -> '0'1384R:C: adjacent_3p downward } 0 10 {'0'1384R:C -> '0'1398R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1398R:G -> '0'1384R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1385R:G -> '0'1397R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1397R:C -> '0'1385R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1385R:G -> '0'1398R:G: outward } 0 15 {'0'1398R:G -> '0'1385R:G: outward } 0 16 {'0'1397R:C -> '0'1398R:G: adjacent_5p upward } 0 17 {'0'1398R:G -> '0'1397R:C: adjacent_3p downward } 0 18 {'0'1398R:G -> '0'1399R:A: adjacent_5p upward } 0 19 {'0'1399R:A -> '0'1398R:G: adjacent_3p downward } 0 20 {'0'1399R:A -> '0'1400R:C: adjacent_5p upward } 0 21 {'0'1400R:C -> '0'1399R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1383R:U 0 1 '0'1384R:C 0 2 '0'1385R:G 0 3 '0'1386R:G 0 4 '0'1396R:C 0 5 '0'1397R:C 0 6 '0'1398R:G 0 7 '0'1399R:A 0 [Edges] 0 {'0'1383R:U -> '0'1384R:C: adjacent_5p upward } 0 1 {'0'1384R:C -> '0'1383R:U: adjacent_3p downward } 0 2 {'0'1383R:U -> '0'1399R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1399R:A -> '0'1383R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1384R:C -> '0'1385R:G: adjacent_5p upward } 0 5 {'0'1385R:G -> '0'1384R:C: adjacent_3p downward } 0 6 {'0'1384R:C -> '0'1398R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1398R:G -> '0'1384R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1385R:G -> '0'1386R:G: adjacent_5p upward } 0 9 {'0'1386R:G -> '0'1385R:G: adjacent_3p downward } 0 10 {'0'1385R:G -> '0'1397R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1397R:C -> '0'1385R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1385R:G -> '0'1398R:G: outward } 0 13 {'0'1398R:G -> '0'1385R:G: outward } 0 14 {'0'1386R:G -> '0'1396R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1396R:C -> '0'1386R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1396R:C -> '0'1397R:C: adjacent_5p } 0 17 {'0'1397R:C -> '0'1396R:C: adjacent_3p } 0 18 {'0'1397R:C -> '0'1398R:G: adjacent_5p upward } 0 19 {'0'1398R:G -> '0'1397R:C: adjacent_3p downward } 0 20 {'0'1398R:G -> '0'1399R:A: adjacent_5p upward } 0 21 {'0'1399R:A -> '0'1398R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1384R:C 0 1 '0'1385R:G 0 2 '0'1386R:G 0 3 '0'1387R:G 0 4 '0'1395R:C 0 5 '0'1396R:C 0 6 '0'1397R:C 0 7 '0'1398R:G 0 [Edges] 0 {'0'1384R:C -> '0'1385R:G: adjacent_5p upward } 0 1 {'0'1385R:G -> '0'1384R:C: adjacent_3p downward } 0 2 {'0'1384R:C -> '0'1398R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1398R:G -> '0'1384R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1385R:G -> '0'1386R:G: adjacent_5p upward } 0 5 {'0'1386R:G -> '0'1385R:G: adjacent_3p downward } 0 6 {'0'1385R:G -> '0'1397R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1397R:C -> '0'1385R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1385R:G -> '0'1398R:G: outward } 0 9 {'0'1398R:G -> '0'1385R:G: outward } 0 10 {'0'1386R:G -> '0'1387R:G: adjacent_5p upward } 0 11 {'0'1387R:G -> '0'1386R:G: adjacent_3p downward } 0 12 {'0'1386R:G -> '0'1396R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1396R:C -> '0'1386R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1387R:G -> '0'1395R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1395R:C -> '0'1387R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1387R:G -> '0'1396R:C: outward } 0 17 {'0'1396R:C -> '0'1387R:G: outward } 0 18 {'0'1395R:C -> '0'1396R:C: adjacent_5p upward } 0 19 {'0'1396R:C -> '0'1395R:C: adjacent_3p downward } 0 20 {'0'1396R:C -> '0'1397R:C: adjacent_5p } 0 21 {'0'1397R:C -> '0'1396R:C: adjacent_3p } 0 22 {'0'1397R:C -> '0'1398R:G: adjacent_5p upward } 0 23 {'0'1398R:G -> '0'1397R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'1401R:G 0 1 '0'1402R:G 0 2 '0'1403R:C 0 3 '0'1404R:C 0 4 '0'1718R:G 0 5 '0'1719R:G 0 6 '0'1720R:C 0 7 '0'1721R:C 0 [Edges] 0 {'0'1401R:G -> '0'1402R:G: adjacent_5p upward } 0 1 {'0'1402R:G -> '0'1401R:G: adjacent_3p downward } 0 2 {'0'1401R:G -> '0'1721R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1721R:C -> '0'1401R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1402R:G -> '0'1403R:C: adjacent_5p upward } 0 5 {'0'1403R:C -> '0'1402R:G: adjacent_3p downward } 0 6 {'0'1402R:G -> '0'1720R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1720R:C -> '0'1402R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1403R:C -> '0'1404R:C: adjacent_5p } 0 9 {'0'1404R:C -> '0'1403R:C: adjacent_3p } 0 10 {'0'1403R:C -> '0'1719R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1719R:G -> '0'1403R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1404R:C -> '0'1718R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1718R:G -> '0'1404R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1718R:G -> '0'1719R:G: adjacent_5p upward } 0 15 {'0'1719R:G -> '0'1718R:G: adjacent_3p downward } 0 16 {'0'1719R:G -> '0'1720R:C: adjacent_5p upward } 0 17 {'0'1720R:C -> '0'1719R:G: adjacent_3p downward } 0 18 {'0'1720R:C -> '0'1721R:C: adjacent_5p } 0 19 {'0'1721R:C -> '0'1720R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1409R:G 0 1 '0'1410R:G 0 2 '0'1411R:A 0 3 '0'1412R:U 0 4 '0'1697R:G 0 5 '0'1698R:U 0 6 '0'1699R:C 0 7 '0'1700R:C 0 [Edges] 0 {'0'1409R:G -> '0'1410R:G: adjacent_5p upward } 0 1 {'0'1410R:G -> '0'1409R:G: adjacent_3p downward } 0 2 {'0'1409R:G -> '0'1700R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1700R:C -> '0'1409R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1410R:G -> '0'1411R:A: adjacent_5p upward } 0 5 {'0'1411R:A -> '0'1410R:G: adjacent_3p downward } 0 6 {'0'1410R:G -> '0'1699R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1699R:C -> '0'1410R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1411R:A -> '0'1412R:U: adjacent_5p upward } 0 9 {'0'1412R:U -> '0'1411R:A: adjacent_3p downward } 0 10 {'0'1411R:A -> '0'1698R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1698R:U -> '0'1411R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1412R:U -> '0'1697R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {'0'1697R:G -> '0'1412R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {'0'1697R:G -> '0'1698R:U: adjacent_5p upward } 0 15 {'0'1698R:U -> '0'1697R:G: adjacent_3p downward } 0 16 {'0'1698R:U -> '0'1699R:C: adjacent_5p upward } 0 17 {'0'1699R:C -> '0'1698R:U: adjacent_3p downward } 0 18 {'0'1699R:C -> '0'1700R:C: adjacent_5p upward } 0 19 {'0'1700R:C -> '0'1699R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1418R:U 0 1 '0'1419R:U 0 2 '0'1420R:C 0 3 '0'1421R:C 0 4 '0'1443R:G 0 5 '0'1444R:G 0 6 '0'1445R:G 0 7 '0'1446R:U 0 [Edges] 0 {'0'1418R:U -> '0'1419R:U: adjacent_5p } 0 1 {'0'1419R:U -> '0'1418R:U: adjacent_3p } 0 2 {'0'1418R:U -> '0'1445R:G: pairing parallel trans one_hbond Ws/Ww } 0 3 {'0'1445R:G -> '0'1418R:U: pairing parallel trans one_hbond Ww/Ws } 0 4 {'0'1418R:U -> '0'1446R:U: pairing parallel trans one_hbond Ww/Wh } 0 5 {'0'1446R:U -> '0'1418R:U: pairing parallel trans one_hbond Wh/Ww } 0 6 {'0'1419R:U -> '0'1420R:C: adjacent_5p } 0 7 {'0'1420R:C -> '0'1419R:U: adjacent_3p } 0 8 {'0'1420R:C -> '0'1421R:C: adjacent_5p } 0 9 {'0'1421R:C -> '0'1420R:C: adjacent_3p } 0 10 {'0'1420R:C -> '0'1444R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1444R:G -> '0'1420R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1421R:C -> '0'1443R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1443R:G -> '0'1421R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1443R:G -> '0'1444R:G: adjacent_5p upward } 0 15 {'0'1444R:G -> '0'1443R:G: adjacent_3p downward } 0 16 {'0'1444R:G -> '0'1445R:G: adjacent_5p upward } 0 17 {'0'1445R:G -> '0'1444R:G: adjacent_3p downward } 0 18 {'0'1445R:G -> '0'1446R:U: adjacent_5p } 0 19 {'0'1446R:U -> '0'1445R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . . . 2 . 7 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 3 . . . . 17 . 18 7 5 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1420R:C 0 1 '0'1421R:C 0 2 '0'1422R:U 0 3 '0'1423R:C 0 4 '0'1441R:G 0 5 '0'1442R:A 0 6 '0'1443R:G 0 7 '0'1444R:G 0 [Edges] 0 {'0'1420R:C -> '0'1421R:C: adjacent_5p } 0 1 {'0'1421R:C -> '0'1420R:C: adjacent_3p } 0 2 {'0'1420R:C -> '0'1444R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1444R:G -> '0'1420R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1421R:C -> '0'1422R:U: adjacent_5p upward } 0 5 {'0'1422R:U -> '0'1421R:C: adjacent_3p downward } 0 6 {'0'1421R:C -> '0'1443R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1443R:G -> '0'1421R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1422R:U -> '0'1423R:C: adjacent_5p upward } 0 9 {'0'1423R:C -> '0'1422R:U: adjacent_3p downward } 0 10 {'0'1422R:U -> '0'1442R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1442R:A -> '0'1422R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1423R:C -> '0'1441R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1441R:G -> '0'1423R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1441R:G -> '0'1442R:A: adjacent_5p upward } 0 15 {'0'1442R:A -> '0'1441R:G: adjacent_3p downward } 0 16 {'0'1442R:A -> '0'1443R:G: adjacent_5p upward } 0 17 {'0'1443R:G -> '0'1442R:A: adjacent_3p downward } 0 18 {'0'1443R:G -> '0'1444R:G: adjacent_5p upward } 0 19 {'0'1444R:G -> '0'1443R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1421R:C 0 1 '0'1422R:U 0 2 '0'1423R:C 0 3 '0'1424R:A 0 4 '0'1440R:U 0 5 '0'1441R:G 0 6 '0'1442R:A 0 7 '0'1443R:G 0 [Edges] 0 {'0'1421R:C -> '0'1422R:U: adjacent_5p upward } 0 1 {'0'1422R:U -> '0'1421R:C: adjacent_3p downward } 0 2 {'0'1421R:C -> '0'1443R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1443R:G -> '0'1421R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1422R:U -> '0'1423R:C: adjacent_5p upward } 0 5 {'0'1423R:C -> '0'1422R:U: adjacent_3p downward } 0 6 {'0'1422R:U -> '0'1442R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1442R:A -> '0'1422R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1423R:C -> '0'1424R:A: adjacent_5p upward } 0 9 {'0'1424R:A -> '0'1423R:C: adjacent_3p downward } 0 10 {'0'1423R:C -> '0'1441R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1441R:G -> '0'1423R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1424R:A -> '0'1440R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1440R:U -> '0'1424R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1424R:A -> '0'1441R:G: outward } 0 15 {'0'1441R:G -> '0'1424R:A: outward } 0 16 {'0'1440R:U -> '0'1441R:G: adjacent_5p upward } 0 17 {'0'1441R:G -> '0'1440R:U: adjacent_3p downward } 0 18 {'0'1441R:G -> '0'1442R:A: adjacent_5p upward } 0 19 {'0'1442R:A -> '0'1441R:G: adjacent_3p downward } 0 20 {'0'1442R:A -> '0'1443R:G: adjacent_5p upward } 0 21 {'0'1443R:G -> '0'1442R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1422R:U 0 1 '0'1423R:C 0 2 '0'1424R:A 0 3 '0'1425R:G 0 4 '0'1439R:C 0 5 '0'1440R:U 0 6 '0'1441R:G 0 7 '0'1442R:A 0 [Edges] 0 {'0'1422R:U -> '0'1423R:C: adjacent_5p upward } 0 1 {'0'1423R:C -> '0'1422R:U: adjacent_3p downward } 0 2 {'0'1422R:U -> '0'1442R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1442R:A -> '0'1422R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1423R:C -> '0'1424R:A: adjacent_5p upward } 0 5 {'0'1424R:A -> '0'1423R:C: adjacent_3p downward } 0 6 {'0'1423R:C -> '0'1441R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1441R:G -> '0'1423R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1424R:A -> '0'1425R:G: adjacent_5p upward } 0 9 {'0'1425R:G -> '0'1424R:A: adjacent_3p downward } 0 10 {'0'1424R:A -> '0'1440R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1440R:U -> '0'1424R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1424R:A -> '0'1441R:G: outward } 0 13 {'0'1441R:G -> '0'1424R:A: outward } 0 14 {'0'1425R:G -> '0'1439R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1439R:C -> '0'1425R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1439R:C -> '0'1440R:U: adjacent_5p upward } 0 17 {'0'1440R:U -> '0'1439R:C: adjacent_3p downward } 0 18 {'0'1440R:U -> '0'1441R:G: adjacent_5p upward } 0 19 {'0'1441R:G -> '0'1440R:U: adjacent_3p downward } 0 20 {'0'1441R:G -> '0'1442R:A: adjacent_5p upward } 0 21 {'0'1442R:A -> '0'1441R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1459R:A 0 1 '0'1460R:G 0 2 '0'1461R:U 0 3 '0'1462R:C 0 4 '0'1481R:G 0 5 '0'1482R:A 0 6 '0'1483R:C 0 7 '0'1484R:G 0 [Edges] 0 {'0'1459R:A -> '0'1460R:G: adjacent_5p upward } 0 1 {'0'1460R:G -> '0'1459R:A: adjacent_3p downward } 0 2 {'0'1459R:A -> '0'1484R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'1484R:G -> '0'1459R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'1460R:G -> '0'1461R:U: adjacent_5p upward } 0 5 {'0'1461R:U -> '0'1460R:G: adjacent_3p downward } 0 6 {'0'1460R:G -> '0'1483R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1483R:C -> '0'1460R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1461R:U -> '0'1462R:C: adjacent_5p upward } 0 9 {'0'1462R:C -> '0'1461R:U: adjacent_3p downward } 0 10 {'0'1461R:U -> '0'1482R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1482R:A -> '0'1461R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1462R:C -> '0'1481R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1481R:G -> '0'1462R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1481R:G -> '0'1482R:A: adjacent_5p upward } 0 15 {'0'1482R:A -> '0'1481R:G: adjacent_3p downward } 0 16 {'0'1482R:A -> '0'1483R:C: adjacent_5p upward } 0 17 {'0'1483R:C -> '0'1482R:A: adjacent_3p downward } 0 18 {'0'1483R:C -> '0'1484R:G: adjacent_5p upward } 0 19 {'0'1484R:G -> '0'1483R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1460R:G 0 1 '0'1461R:U 0 2 '0'1462R:C 0 3 '0'1463R:A 0 4 '0'1480R:U 0 5 '0'1481R:G 0 6 '0'1482R:A 0 7 '0'1483R:C 0 [Edges] 0 {'0'1460R:G -> '0'1461R:U: adjacent_5p upward } 0 1 {'0'1461R:U -> '0'1460R:G: adjacent_3p downward } 0 2 {'0'1460R:G -> '0'1483R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1483R:C -> '0'1460R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1461R:U -> '0'1462R:C: adjacent_5p upward } 0 5 {'0'1462R:C -> '0'1461R:U: adjacent_3p downward } 0 6 {'0'1461R:U -> '0'1482R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1482R:A -> '0'1461R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1462R:C -> '0'1463R:A: adjacent_5p upward } 0 9 {'0'1463R:A -> '0'1462R:C: adjacent_3p downward } 0 10 {'0'1462R:C -> '0'1481R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1481R:G -> '0'1462R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1463R:A -> '0'1480R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1480R:U -> '0'1463R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1463R:A -> '0'1481R:G: outward } 0 15 {'0'1481R:G -> '0'1463R:A: outward } 0 16 {'0'1480R:U -> '0'1481R:G: adjacent_5p upward } 0 17 {'0'1481R:G -> '0'1480R:U: adjacent_3p downward } 0 18 {'0'1481R:G -> '0'1482R:A: adjacent_5p upward } 0 19 {'0'1482R:A -> '0'1481R:G: adjacent_3p downward } 0 20 {'0'1482R:A -> '0'1483R:C: adjacent_5p upward } 0 21 {'0'1483R:C -> '0'1482R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1461R:U 0 1 '0'1462R:C 0 2 '0'1463R:A 0 3 '0'1464R:U 0 4 '0'1479R:A 0 5 '0'1480R:U 0 6 '0'1481R:G 0 7 '0'1482R:A 0 [Edges] 0 {'0'1461R:U -> '0'1462R:C: adjacent_5p upward } 0 1 {'0'1462R:C -> '0'1461R:U: adjacent_3p downward } 0 2 {'0'1461R:U -> '0'1482R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1482R:A -> '0'1461R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1462R:C -> '0'1463R:A: adjacent_5p upward } 0 5 {'0'1463R:A -> '0'1462R:C: adjacent_3p downward } 0 6 {'0'1462R:C -> '0'1481R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1481R:G -> '0'1462R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1463R:A -> '0'1464R:U: adjacent_5p upward } 0 9 {'0'1464R:U -> '0'1463R:A: adjacent_3p downward } 0 10 {'0'1463R:A -> '0'1480R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1480R:U -> '0'1463R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1463R:A -> '0'1481R:G: outward } 0 13 {'0'1481R:G -> '0'1463R:A: outward } 0 14 {'0'1464R:U -> '0'1479R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1479R:A -> '0'1464R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1479R:A -> '0'1480R:U: adjacent_5p upward } 0 17 {'0'1480R:U -> '0'1479R:A: adjacent_3p downward } 0 18 {'0'1480R:U -> '0'1481R:G: adjacent_5p upward } 0 19 {'0'1481R:G -> '0'1480R:U: adjacent_3p downward } 0 20 {'0'1481R:G -> '0'1482R:A: adjacent_5p upward } 0 21 {'0'1482R:A -> '0'1481R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1462R:C 0 1 '0'1463R:A 0 2 '0'1464R:U 0 3 '0'1465R:A 0 4 '0'1478R:U 0 5 '0'1479R:A 0 6 '0'1480R:U 0 7 '0'1481R:G 0 [Edges] 0 {'0'1462R:C -> '0'1463R:A: adjacent_5p upward } 0 1 {'0'1463R:A -> '0'1462R:C: adjacent_3p downward } 0 2 {'0'1462R:C -> '0'1481R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1481R:G -> '0'1462R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1463R:A -> '0'1464R:U: adjacent_5p upward } 0 5 {'0'1464R:U -> '0'1463R:A: adjacent_3p downward } 0 6 {'0'1463R:A -> '0'1480R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1480R:U -> '0'1463R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1463R:A -> '0'1481R:G: outward } 0 9 {'0'1481R:G -> '0'1463R:A: outward } 0 10 {'0'1464R:U -> '0'1465R:A: adjacent_5p upward } 0 11 {'0'1465R:A -> '0'1464R:U: adjacent_3p downward } 0 12 {'0'1464R:U -> '0'1479R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1479R:A -> '0'1464R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1465R:A -> '0'1478R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1478R:U -> '0'1465R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1465R:A -> '0'1479R:A: outward } 0 17 {'0'1479R:A -> '0'1465R:A: outward } 0 18 {'0'1478R:U -> '0'1479R:A: adjacent_5p upward } 0 19 {'0'1479R:A -> '0'1478R:U: adjacent_3p downward } 0 20 {'0'1479R:A -> '0'1480R:U: adjacent_5p upward } 0 21 {'0'1480R:U -> '0'1479R:A: adjacent_3p downward } 0 22 {'0'1480R:U -> '0'1481R:G: adjacent_5p upward } 0 23 {'0'1481R:G -> '0'1480R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'1463R:A 0 1 '0'1464R:U 0 2 '0'1465R:A 0 3 '0'1466R:C 0 4 '0'1477R:C 0 5 '0'1478R:U 0 6 '0'1479R:A 0 7 '0'1480R:U 0 [Edges] 0 {'0'1463R:A -> '0'1464R:U: adjacent_5p upward } 0 1 {'0'1464R:U -> '0'1463R:A: adjacent_3p downward } 0 2 {'0'1463R:A -> '0'1480R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1480R:U -> '0'1463R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1464R:U -> '0'1465R:A: adjacent_5p upward } 0 5 {'0'1465R:A -> '0'1464R:U: adjacent_3p downward } 0 6 {'0'1464R:U -> '0'1479R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1479R:A -> '0'1464R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1465R:A -> '0'1466R:C: adjacent_5p upward } 0 9 {'0'1466R:C -> '0'1465R:A: adjacent_3p downward } 0 10 {'0'1465R:A -> '0'1478R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1478R:U -> '0'1465R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1465R:A -> '0'1479R:A: outward } 0 13 {'0'1479R:A -> '0'1465R:A: outward } 0 14 {'0'1466R:C -> '0'1477R:C: pairing antiparallel cis one_hbond 137 Ww/Wh } 0 15 {'0'1477R:C -> '0'1466R:C: pairing antiparallel cis one_hbond 137 Wh/Ww } 0 16 {'0'1477R:C -> '0'1478R:U: adjacent_5p upward } 0 17 {'0'1478R:U -> '0'1477R:C: adjacent_3p downward } 0 18 {'0'1478R:U -> '0'1479R:A: adjacent_5p upward } 0 19 {'0'1479R:A -> '0'1478R:U: adjacent_3p downward } 0 20 {'0'1479R:A -> '0'1480R:U: adjacent_5p upward } 0 21 {'0'1480R:U -> '0'1479R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1494R:A 0 1 '0'1495R:C 0 2 '0'1496R:G 0 3 '0'1497R:G 0 4 '0'1508R:C 0 5 '0'1509R:C 0 6 '0'1510R:G 0 7 '0'1511R:U 0 [Edges] 0 {'0'1494R:A -> '0'1495R:C: adjacent_5p upward } 0 1 {'0'1495R:C -> '0'1494R:A: adjacent_3p downward } 0 2 {'0'1494R:A -> '0'1511R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1511R:U -> '0'1494R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1495R:C -> '0'1496R:G: adjacent_5p upward } 0 5 {'0'1496R:G -> '0'1495R:C: adjacent_3p downward } 0 6 {'0'1495R:C -> '0'1510R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1510R:G -> '0'1495R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1496R:G -> '0'1497R:G: adjacent_5p upward } 0 9 {'0'1497R:G -> '0'1496R:G: adjacent_3p downward } 0 10 {'0'1496R:G -> '0'1509R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1509R:C -> '0'1496R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1496R:G -> '0'1510R:G: outward } 0 13 {'0'1510R:G -> '0'1496R:G: outward } 0 14 {'0'1497R:G -> '0'1508R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1508R:C -> '0'1497R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1508R:C -> '0'1509R:C: adjacent_5p upward } 0 17 {'0'1509R:C -> '0'1508R:C: adjacent_3p downward } 0 18 {'0'1509R:C -> '0'1510R:G: adjacent_5p upward } 0 19 {'0'1510R:G -> '0'1509R:C: adjacent_3p downward } 0 20 {'0'1510R:G -> '0'1511R:U: adjacent_5p upward } 0 21 {'0'1511R:U -> '0'1510R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1495R:C 0 1 '0'1496R:G 0 2 '0'1497R:G 0 3 '0'1498R:G 0 4 '0'1507R:C 0 5 '0'1508R:C 0 6 '0'1509R:C 0 7 '0'1510R:G 0 [Edges] 0 {'0'1495R:C -> '0'1496R:G: adjacent_5p upward } 0 1 {'0'1496R:G -> '0'1495R:C: adjacent_3p downward } 0 2 {'0'1495R:C -> '0'1510R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1510R:G -> '0'1495R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1496R:G -> '0'1497R:G: adjacent_5p upward } 0 5 {'0'1497R:G -> '0'1496R:G: adjacent_3p downward } 0 6 {'0'1496R:G -> '0'1509R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1509R:C -> '0'1496R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1496R:G -> '0'1510R:G: outward } 0 9 {'0'1510R:G -> '0'1496R:G: outward } 0 10 {'0'1497R:G -> '0'1498R:G: adjacent_5p upward } 0 11 {'0'1498R:G -> '0'1497R:G: adjacent_3p downward } 0 12 {'0'1497R:G -> '0'1508R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1508R:C -> '0'1497R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1498R:G -> '0'1507R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1507R:C -> '0'1498R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1507R:C -> '0'1508R:C: adjacent_5p upward } 0 17 {'0'1508R:C -> '0'1507R:C: adjacent_3p downward } 0 18 {'0'1508R:C -> '0'1509R:C: adjacent_5p upward } 0 19 {'0'1509R:C -> '0'1508R:C: adjacent_3p downward } 0 20 {'0'1509R:C -> '0'1510R:G: adjacent_5p upward } 0 21 {'0'1510R:G -> '0'1509R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1514R:C 0 1 '0'1515R:A 0 2 '0'1516R:C 0 3 '0'1517R:U 0 4 '0'1669R:A 0 5 '0'1670R:G 0 6 '0'1671R:U 0 7 '0'1672R:G 0 [Edges] 0 {'0'1514R:C -> '0'1515R:A: adjacent_5p } 0 1 {'0'1515R:A -> '0'1514R:C: adjacent_3p } 0 2 {'0'1514R:C -> '0'1672R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1672R:G -> '0'1514R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1515R:A -> '0'1516R:C: adjacent_5p upward } 0 5 {'0'1516R:C -> '0'1515R:A: adjacent_3p downward } 0 6 {'0'1515R:A -> '0'1671R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1671R:U -> '0'1515R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1515R:A -> '0'1672R:G: outward } 0 9 {'0'1672R:G -> '0'1515R:A: outward } 0 10 {'0'1516R:C -> '0'1517R:U: adjacent_5p upward } 0 11 {'0'1517R:U -> '0'1516R:C: adjacent_3p downward } 0 12 {'0'1516R:C -> '0'1670R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1670R:G -> '0'1516R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1517R:U -> '0'1669R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1669R:A -> '0'1517R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1669R:A -> '0'1670R:G: adjacent_5p upward } 0 17 {'0'1670R:G -> '0'1669R:A: adjacent_3p downward } 0 18 {'0'1670R:G -> '0'1671R:U: adjacent_5p upward } 0 19 {'0'1671R:U -> '0'1670R:G: adjacent_3p downward } 0 20 {'0'1671R:U -> '0'1672R:G: adjacent_5p upward } 0 21 {'0'1672R:G -> '0'1671R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1515R:A 0 1 '0'1516R:C 0 2 '0'1517R:U 0 3 '0'1518R:A 0 4 '0'1668R:U 0 5 '0'1669R:A 0 6 '0'1670R:G 0 7 '0'1671R:U 0 [Edges] 0 {'0'1515R:A -> '0'1516R:C: adjacent_5p upward } 0 1 {'0'1516R:C -> '0'1515R:A: adjacent_3p downward } 0 2 {'0'1515R:A -> '0'1671R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1671R:U -> '0'1515R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1516R:C -> '0'1517R:U: adjacent_5p upward } 0 5 {'0'1517R:U -> '0'1516R:C: adjacent_3p downward } 0 6 {'0'1516R:C -> '0'1670R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1670R:G -> '0'1516R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1517R:U -> '0'1518R:A: adjacent_5p upward } 0 9 {'0'1518R:A -> '0'1517R:U: adjacent_3p downward } 0 10 {'0'1517R:U -> '0'1669R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1669R:A -> '0'1517R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1518R:A -> '0'1668R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1668R:U -> '0'1518R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1518R:A -> '0'1669R:A: outward } 0 15 {'0'1669R:A -> '0'1518R:A: outward } 0 16 {'0'1668R:U -> '0'1669R:A: adjacent_5p } 0 17 {'0'1669R:A -> '0'1668R:U: adjacent_3p } 0 18 {'0'1669R:A -> '0'1670R:G: adjacent_5p upward } 0 19 {'0'1670R:G -> '0'1669R:A: adjacent_3p downward } 0 20 {'0'1670R:G -> '0'1671R:U: adjacent_5p upward } 0 21 {'0'1671R:U -> '0'1670R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1516R:C 0 1 '0'1517R:U 0 2 '0'1518R:A 0 3 '0'1519R:U 0 4 '0'1667R:A 0 5 '0'1668R:U 0 6 '0'1669R:A 0 7 '0'1670R:G 0 [Edges] 0 {'0'1516R:C -> '0'1517R:U: adjacent_5p upward } 0 1 {'0'1517R:U -> '0'1516R:C: adjacent_3p downward } 0 2 {'0'1516R:C -> '0'1670R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1670R:G -> '0'1516R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1517R:U -> '0'1518R:A: adjacent_5p upward } 0 5 {'0'1518R:A -> '0'1517R:U: adjacent_3p downward } 0 6 {'0'1517R:U -> '0'1669R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1669R:A -> '0'1517R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1518R:A -> '0'1519R:U: adjacent_5p upward } 0 9 {'0'1519R:U -> '0'1518R:A: adjacent_3p downward } 0 10 {'0'1518R:A -> '0'1668R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1668R:U -> '0'1518R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1518R:A -> '0'1669R:A: outward } 0 13 {'0'1669R:A -> '0'1518R:A: outward } 0 14 {'0'1519R:U -> '0'1667R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1667R:A -> '0'1519R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1667R:A -> '0'1668R:U: adjacent_5p upward } 0 17 {'0'1668R:U -> '0'1667R:A: adjacent_3p downward } 0 18 {'0'1668R:U -> '0'1669R:A: adjacent_5p } 0 19 {'0'1669R:A -> '0'1668R:U: adjacent_3p } 0 20 {'0'1669R:A -> '0'1670R:G: adjacent_5p upward } 0 21 {'0'1670R:G -> '0'1669R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1517R:U 0 1 '0'1518R:A 0 2 '0'1519R:U 0 3 '0'1520R:G 0 4 '0'1666R:C 0 5 '0'1667R:A 0 6 '0'1668R:U 0 7 '0'1669R:A 0 [Edges] 0 {'0'1517R:U -> '0'1518R:A: adjacent_5p upward } 0 1 {'0'1518R:A -> '0'1517R:U: adjacent_3p downward } 0 2 {'0'1517R:U -> '0'1669R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1669R:A -> '0'1517R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1518R:A -> '0'1519R:U: adjacent_5p upward } 0 5 {'0'1519R:U -> '0'1518R:A: adjacent_3p downward } 0 6 {'0'1518R:A -> '0'1668R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1668R:U -> '0'1518R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1518R:A -> '0'1669R:A: outward } 0 9 {'0'1669R:A -> '0'1518R:A: outward } 0 10 {'0'1519R:U -> '0'1520R:G: adjacent_5p upward } 0 11 {'0'1520R:G -> '0'1519R:U: adjacent_3p downward } 0 12 {'0'1519R:U -> '0'1667R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1667R:A -> '0'1519R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1520R:G -> '0'1666R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1666R:C -> '0'1520R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1520R:G -> '0'1667R:A: outward } 0 17 {'0'1667R:A -> '0'1520R:G: outward } 0 18 {'0'1666R:C -> '0'1667R:A: adjacent_5p } 0 19 {'0'1667R:A -> '0'1666R:C: adjacent_3p } 0 20 {'0'1667R:A -> '0'1668R:U: adjacent_5p upward } 0 21 {'0'1668R:U -> '0'1667R:A: adjacent_3p downward } 0 22 {'0'1668R:U -> '0'1669R:A: adjacent_5p } 0 23 {'0'1669R:A -> '0'1668R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'1518R:A 0 1 '0'1519R:U 0 2 '0'1520R:G 0 3 '0'1521R:C 0 4 '0'1665R:G 0 5 '0'1666R:C 0 6 '0'1667R:A 0 7 '0'1668R:U 0 [Edges] 0 {'0'1518R:A -> '0'1519R:U: adjacent_5p upward } 0 1 {'0'1519R:U -> '0'1518R:A: adjacent_3p downward } 0 2 {'0'1518R:A -> '0'1668R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1668R:U -> '0'1518R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1519R:U -> '0'1520R:G: adjacent_5p upward } 0 5 {'0'1520R:G -> '0'1519R:U: adjacent_3p downward } 0 6 {'0'1519R:U -> '0'1667R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1667R:A -> '0'1519R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1520R:G -> '0'1521R:C: adjacent_5p upward } 0 9 {'0'1521R:C -> '0'1520R:G: adjacent_3p downward } 0 10 {'0'1520R:G -> '0'1666R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1666R:C -> '0'1520R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1520R:G -> '0'1667R:A: outward } 0 13 {'0'1667R:A -> '0'1520R:G: outward } 0 14 {'0'1521R:C -> '0'1665R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1665R:G -> '0'1521R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1665R:G -> '0'1666R:C: adjacent_5p upward } 0 17 {'0'1666R:C -> '0'1665R:G: adjacent_3p downward } 0 18 {'0'1666R:C -> '0'1667R:A: adjacent_5p } 0 19 {'0'1667R:A -> '0'1666R:C: adjacent_3p } 0 20 {'0'1667R:A -> '0'1668R:U: adjacent_5p upward } 0 21 {'0'1668R:U -> '0'1667R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1527R:A 0 1 '0'1528R:A 0 2 '0'1529R:G 0 3 '0'1530R:U 0 4 '0'1661R:A 0 5 '0'1662R:C 0 6 '0'1663R:G 0 7 '0'1664R:A 0 [Edges] 0 {'0'1527R:A -> '0'1528R:A: adjacent_5p upward } 0 1 {'0'1528R:A -> '0'1527R:A: adjacent_3p downward } 0 2 {'0'1527R:A -> '0'1664R:A: pairing parallel trans II Hh/Hh } 0 3 {'0'1664R:A -> '0'1527R:A: pairing parallel trans II Hh/Hh } 0 4 {'0'1528R:A -> '0'1529R:G: adjacent_5p upward } 0 5 {'0'1529R:G -> '0'1528R:A: adjacent_3p downward } 0 6 {'0'1528R:A -> '0'1663R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {'0'1663R:G -> '0'1528R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {'0'1529R:G -> '0'1530R:U: adjacent_5p upward } 0 9 {'0'1530R:U -> '0'1529R:G: adjacent_3p downward } 0 10 {'0'1529R:G -> '0'1662R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1662R:C -> '0'1529R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1530R:U -> '0'1661R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1661R:A -> '0'1530R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1661R:A -> '0'1662R:C: adjacent_5p upward } 0 15 {'0'1662R:C -> '0'1661R:A: adjacent_3p downward } 0 16 {'0'1662R:C -> '0'1663R:G: adjacent_5p upward } 0 17 {'0'1663R:G -> '0'1662R:C: adjacent_3p downward } 0 18 {'0'1663R:G -> '0'1664R:A: adjacent_5p inward } 0 19 {'0'1664R:A -> '0'1663R:G: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1528R:A 0 1 '0'1529R:G 0 2 '0'1530R:U 0 3 '0'1531R:U 0 4 '0'1660R:G 0 5 '0'1661R:A 0 6 '0'1662R:C 0 7 '0'1663R:G 0 [Edges] 0 {'0'1528R:A -> '0'1529R:G: adjacent_5p upward } 0 1 {'0'1529R:G -> '0'1528R:A: adjacent_3p downward } 0 2 {'0'1528R:A -> '0'1663R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'1663R:G -> '0'1528R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'1529R:G -> '0'1530R:U: adjacent_5p upward } 0 5 {'0'1530R:U -> '0'1529R:G: adjacent_3p downward } 0 6 {'0'1529R:G -> '0'1662R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1662R:C -> '0'1529R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1530R:U -> '0'1531R:U: adjacent_5p upward } 0 9 {'0'1531R:U -> '0'1530R:U: adjacent_3p downward } 0 10 {'0'1530R:U -> '0'1661R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1661R:A -> '0'1530R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1531R:U -> '0'1660R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {'0'1660R:G -> '0'1531R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {'0'1660R:G -> '0'1661R:A: adjacent_5p upward } 0 15 {'0'1661R:A -> '0'1660R:G: adjacent_3p downward } 0 16 {'0'1661R:A -> '0'1662R:C: adjacent_5p upward } 0 17 {'0'1662R:C -> '0'1661R:A: adjacent_3p downward } 0 18 {'0'1662R:C -> '0'1663R:G: adjacent_5p upward } 0 19 {'0'1663R:G -> '0'1662R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1529R:G 0 1 '0'1530R:U 0 2 '0'1531R:U 0 3 '0'1532R:G 0 4 '0'1659R:A 0 5 '0'1660R:G 0 6 '0'1661R:A 0 7 '0'1662R:C 0 [Edges] 0 {'0'1529R:G -> '0'1530R:U: adjacent_5p upward } 0 1 {'0'1530R:U -> '0'1529R:G: adjacent_3p downward } 0 2 {'0'1529R:G -> '0'1662R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1662R:C -> '0'1529R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1530R:U -> '0'1531R:U: adjacent_5p upward } 0 5 {'0'1531R:U -> '0'1530R:U: adjacent_3p downward } 0 6 {'0'1530R:U -> '0'1661R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1661R:A -> '0'1530R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1531R:U -> '0'1532R:G: adjacent_5p upward } 0 9 {'0'1532R:G -> '0'1531R:U: adjacent_3p downward } 0 10 {'0'1531R:U -> '0'1660R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {'0'1660R:G -> '0'1531R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {'0'1532R:G -> '0'1659R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {'0'1659R:A -> '0'1532R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {'0'1659R:A -> '0'1660R:G: adjacent_5p upward } 0 15 {'0'1660R:G -> '0'1659R:A: adjacent_3p downward } 0 16 {'0'1660R:G -> '0'1661R:A: adjacent_5p upward } 0 17 {'0'1661R:A -> '0'1660R:G: adjacent_3p downward } 0 18 {'0'1661R:A -> '0'1662R:C: adjacent_5p upward } 0 19 {'0'1662R:C -> '0'1661R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1530R:U 0 1 '0'1531R:U 0 2 '0'1532R:G 0 3 '0'1533R:A 0 4 '0'1658R:A 0 5 '0'1659R:A 0 6 '0'1660R:G 0 7 '0'1661R:A 0 [Edges] 0 {'0'1530R:U -> '0'1531R:U: adjacent_5p upward } 0 1 {'0'1531R:U -> '0'1530R:U: adjacent_3p downward } 0 2 {'0'1530R:U -> '0'1661R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1661R:A -> '0'1530R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1531R:U -> '0'1532R:G: adjacent_5p upward } 0 5 {'0'1532R:G -> '0'1531R:U: adjacent_3p downward } 0 6 {'0'1531R:U -> '0'1660R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'1660R:G -> '0'1531R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'1532R:G -> '0'1533R:A: adjacent_5p inward } 0 9 {'0'1533R:A -> '0'1532R:G: adjacent_3p inward } 0 10 {'0'1532R:G -> '0'1659R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {'0'1659R:A -> '0'1532R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {'0'1533R:A -> '0'1658R:A: pairing parallel trans II Hh/Hh } 0 13 {'0'1658R:A -> '0'1533R:A: pairing parallel trans II Hh/Hh } 0 14 {'0'1658R:A -> '0'1659R:A: adjacent_5p upward } 0 15 {'0'1659R:A -> '0'1658R:A: adjacent_3p downward } 0 16 {'0'1659R:A -> '0'1660R:G: adjacent_5p upward } 0 17 {'0'1660R:G -> '0'1659R:A: adjacent_3p downward } 0 18 {'0'1660R:G -> '0'1661R:A: adjacent_5p upward } 0 19 {'0'1661R:A -> '0'1660R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1531R:U 0 1 '0'1532R:G 0 2 '0'1533R:A 0 3 '0'1534R:C 0 4 '0'1657R:A 0 5 '0'1658R:A 0 6 '0'1659R:A 0 7 '0'1660R:G 0 [Edges] 0 {'0'1531R:U -> '0'1532R:G: adjacent_5p upward } 0 1 {'0'1532R:G -> '0'1531R:U: adjacent_3p downward } 0 2 {'0'1531R:U -> '0'1660R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'1660R:G -> '0'1531R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'1532R:G -> '0'1533R:A: adjacent_5p inward } 0 5 {'0'1533R:A -> '0'1532R:G: adjacent_3p inward } 0 6 {'0'1532R:G -> '0'1659R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {'0'1659R:A -> '0'1532R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {'0'1533R:A -> '0'1534R:C: adjacent_5p } 0 9 {'0'1534R:C -> '0'1533R:A: adjacent_3p } 0 10 {'0'1533R:A -> '0'1658R:A: pairing parallel trans II Hh/Hh } 0 11 {'0'1658R:A -> '0'1533R:A: pairing parallel trans II Hh/Hh } 0 12 {'0'1534R:C -> '0'1657R:A: pairing antiparallel trans one_hbond Wh/Hh } 0 13 {'0'1657R:A -> '0'1534R:C: pairing antiparallel trans one_hbond Hh/Wh } 0 14 {'0'1657R:A -> '0'1658R:A: adjacent_5p upward } 0 15 {'0'1658R:A -> '0'1657R:A: adjacent_3p downward } 0 16 {'0'1658R:A -> '0'1659R:A: adjacent_5p upward } 0 17 {'0'1659R:A -> '0'1658R:A: adjacent_3p downward } 0 18 {'0'1659R:A -> '0'1660R:G: adjacent_5p upward } 0 19 {'0'1660R:G -> '0'1659R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1535R:G 0 1 '0'1536R:C 0 2 '0'1537R:C 0 3 '0'1538R:C 0 4 '0'1647R:G 0 5 '0'1648R:G 0 6 '0'1649R:G 0 7 '0'1650R:C 0 [Edges] 0 {'0'1535R:G -> '0'1536R:C: adjacent_5p upward } 0 1 {'0'1536R:C -> '0'1535R:G: adjacent_3p downward } 0 2 {'0'1535R:G -> '0'1650R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1650R:C -> '0'1535R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1536R:C -> '0'1537R:C: adjacent_5p upward } 0 5 {'0'1537R:C -> '0'1536R:C: adjacent_3p downward } 0 6 {'0'1536R:C -> '0'1649R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1649R:G -> '0'1536R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1537R:C -> '0'1538R:C: adjacent_5p upward } 0 9 {'0'1538R:C -> '0'1537R:C: adjacent_3p downward } 0 10 {'0'1537R:C -> '0'1648R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1648R:G -> '0'1537R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1538R:C -> '0'1647R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1647R:G -> '0'1538R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1647R:G -> '0'1648R:G: adjacent_5p upward } 0 15 {'0'1648R:G -> '0'1647R:G: adjacent_3p downward } 0 16 {'0'1648R:G -> '0'1649R:G: adjacent_5p upward } 0 17 {'0'1649R:G -> '0'1648R:G: adjacent_3p downward } 0 18 {'0'1649R:G -> '0'1650R:C: adjacent_5p upward } 0 19 {'0'1650R:C -> '0'1649R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1536R:C 0 1 '0'1537R:C 0 2 '0'1538R:C 0 3 '0'1539R:U 0 4 '0'1646R:G 0 5 '0'1647R:G 0 6 '0'1648R:G 0 7 '0'1649R:G 0 [Edges] 0 {'0'1536R:C -> '0'1537R:C: adjacent_5p upward } 0 1 {'0'1537R:C -> '0'1536R:C: adjacent_3p downward } 0 2 {'0'1536R:C -> '0'1649R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1649R:G -> '0'1536R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1537R:C -> '0'1538R:C: adjacent_5p upward } 0 5 {'0'1538R:C -> '0'1537R:C: adjacent_3p downward } 0 6 {'0'1537R:C -> '0'1648R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1648R:G -> '0'1537R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1538R:C -> '0'1539R:U: adjacent_5p upward } 0 9 {'0'1539R:U -> '0'1538R:C: adjacent_3p downward } 0 10 {'0'1538R:C -> '0'1647R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1647R:G -> '0'1538R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1539R:U -> '0'1646R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {'0'1646R:G -> '0'1539R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {'0'1646R:G -> '0'1647R:G: adjacent_5p upward } 0 15 {'0'1647R:G -> '0'1646R:G: adjacent_3p downward } 0 16 {'0'1647R:G -> '0'1648R:G: adjacent_5p upward } 0 17 {'0'1648R:G -> '0'1647R:G: adjacent_3p downward } 0 18 {'0'1648R:G -> '0'1649R:G: adjacent_5p upward } 0 19 {'0'1649R:G -> '0'1648R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1537R:C 0 1 '0'1538R:C 0 2 '0'1539R:U 0 3 '0'1540R:G 0 4 '0'1645R:U 0 5 '0'1646R:G 0 6 '0'1647R:G 0 7 '0'1648R:G 0 [Edges] 0 {'0'1537R:C -> '0'1538R:C: adjacent_5p upward } 0 1 {'0'1538R:C -> '0'1537R:C: adjacent_3p downward } 0 2 {'0'1537R:C -> '0'1648R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1648R:G -> '0'1537R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1538R:C -> '0'1539R:U: adjacent_5p upward } 0 5 {'0'1539R:U -> '0'1538R:C: adjacent_3p downward } 0 6 {'0'1538R:C -> '0'1647R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1647R:G -> '0'1538R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1539R:U -> '0'1540R:G: adjacent_5p } 0 9 {'0'1540R:G -> '0'1539R:U: adjacent_3p } 0 10 {'0'1539R:U -> '0'1646R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {'0'1646R:G -> '0'1539R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {'0'1540R:G -> '0'1645R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {'0'1645R:U -> '0'1540R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {'0'1540R:G -> '0'1646R:G: outward } 0 15 {'0'1646R:G -> '0'1540R:G: outward } 0 16 {'0'1645R:U -> '0'1646R:G: adjacent_5p } 0 17 {'0'1646R:G -> '0'1645R:U: adjacent_3p } 0 18 {'0'1646R:G -> '0'1647R:G: adjacent_5p upward } 0 19 {'0'1647R:G -> '0'1646R:G: adjacent_3p downward } 0 20 {'0'1647R:G -> '0'1648R:G: adjacent_5p upward } 0 21 {'0'1648R:G -> '0'1647R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1538R:C 0 1 '0'1539R:U 0 2 '0'1540R:G 0 3 '0'1541R:G 0 4 '0'1644R:C 0 5 '0'1645R:U 0 6 '0'1646R:G 0 7 '0'1647R:G 0 [Edges] 0 {'0'1538R:C -> '0'1539R:U: adjacent_5p upward } 0 1 {'0'1539R:U -> '0'1538R:C: adjacent_3p downward } 0 2 {'0'1538R:C -> '0'1647R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1647R:G -> '0'1538R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1539R:U -> '0'1540R:G: adjacent_5p } 0 5 {'0'1540R:G -> '0'1539R:U: adjacent_3p } 0 6 {'0'1539R:U -> '0'1646R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'1646R:G -> '0'1539R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'1540R:G -> '0'1541R:G: adjacent_5p upward } 0 9 {'0'1541R:G -> '0'1540R:G: adjacent_3p downward } 0 10 {'0'1540R:G -> '0'1645R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'1645R:U -> '0'1540R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'1540R:G -> '0'1646R:G: outward } 0 13 {'0'1646R:G -> '0'1540R:G: outward } 0 14 {'0'1541R:G -> '0'1644R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1644R:C -> '0'1541R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1644R:C -> '0'1645R:U: adjacent_5p upward } 0 17 {'0'1645R:U -> '0'1644R:C: adjacent_3p downward } 0 18 {'0'1645R:U -> '0'1646R:G: adjacent_5p } 0 19 {'0'1646R:G -> '0'1645R:U: adjacent_3p } 0 20 {'0'1646R:G -> '0'1647R:G: adjacent_5p upward } 0 21 {'0'1647R:G -> '0'1646R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1539R:U 0 1 '0'1540R:G 0 2 '0'1541R:G 0 3 '0'1542R:G 0 4 '0'1643R:C 0 5 '0'1644R:C 0 6 '0'1645R:U 0 7 '0'1646R:G 0 [Edges] 0 {'0'1539R:U -> '0'1540R:G: adjacent_5p } 0 1 {'0'1540R:G -> '0'1539R:U: adjacent_3p } 0 2 {'0'1539R:U -> '0'1646R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'1646R:G -> '0'1539R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'1540R:G -> '0'1541R:G: adjacent_5p upward } 0 5 {'0'1541R:G -> '0'1540R:G: adjacent_3p downward } 0 6 {'0'1540R:G -> '0'1645R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'1645R:U -> '0'1540R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'1540R:G -> '0'1646R:G: outward } 0 9 {'0'1646R:G -> '0'1540R:G: outward } 0 10 {'0'1541R:G -> '0'1542R:G: adjacent_5p upward } 0 11 {'0'1542R:G -> '0'1541R:G: adjacent_3p downward } 0 12 {'0'1541R:G -> '0'1644R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1644R:C -> '0'1541R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1542R:G -> '0'1643R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1643R:C -> '0'1542R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1542R:G -> '0'1644R:C: outward } 0 17 {'0'1644R:C -> '0'1542R:G: outward } 0 18 {'0'1643R:C -> '0'1644R:C: adjacent_5p } 0 19 {'0'1644R:C -> '0'1643R:C: adjacent_3p } 0 20 {'0'1644R:C -> '0'1645R:U: adjacent_5p upward } 0 21 {'0'1645R:U -> '0'1644R:C: adjacent_3p downward } 0 22 {'0'1645R:U -> '0'1646R:G: adjacent_5p } 0 23 {'0'1646R:G -> '0'1645R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'1540R:G 0 1 '0'1541R:G 0 2 '0'1542R:G 0 3 '0'1543R:G 0 4 '0'1642R:A 0 5 '0'1643R:C 0 6 '0'1644R:C 0 7 '0'1645R:U 0 [Edges] 0 {'0'1540R:G -> '0'1541R:G: adjacent_5p upward } 0 1 {'0'1541R:G -> '0'1540R:G: adjacent_3p downward } 0 2 {'0'1540R:G -> '0'1645R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'1645R:U -> '0'1540R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'1541R:G -> '0'1542R:G: adjacent_5p upward } 0 5 {'0'1542R:G -> '0'1541R:G: adjacent_3p downward } 0 6 {'0'1541R:G -> '0'1644R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1644R:C -> '0'1541R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1542R:G -> '0'1543R:G: adjacent_5p upward } 0 9 {'0'1543R:G -> '0'1542R:G: adjacent_3p downward } 0 10 {'0'1542R:G -> '0'1643R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1643R:C -> '0'1542R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1542R:G -> '0'1644R:C: outward } 0 13 {'0'1644R:C -> '0'1542R:G: outward } 0 14 {'0'1543R:G -> '0'1642R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {'0'1642R:A -> '0'1543R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {'0'1642R:A -> '0'1643R:C: adjacent_5p upward } 0 17 {'0'1643R:C -> '0'1642R:A: adjacent_3p downward } 0 18 {'0'1643R:C -> '0'1644R:C: adjacent_5p } 0 19 {'0'1644R:C -> '0'1643R:C: adjacent_3p } 0 20 {'0'1644R:C -> '0'1645R:U: adjacent_5p upward } 0 21 {'0'1645R:U -> '0'1644R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1541R:G 0 1 '0'1542R:G 0 2 '0'1543R:G 0 3 '0'1544R:U 0 4 '0'1641R:A 0 5 '0'1642R:A 0 6 '0'1643R:C 0 7 '0'1644R:C 0 [Edges] 0 {'0'1541R:G -> '0'1542R:G: adjacent_5p upward } 0 1 {'0'1542R:G -> '0'1541R:G: adjacent_3p downward } 0 2 {'0'1541R:G -> '0'1644R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1644R:C -> '0'1541R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1542R:G -> '0'1543R:G: adjacent_5p upward } 0 5 {'0'1543R:G -> '0'1542R:G: adjacent_3p downward } 0 6 {'0'1542R:G -> '0'1643R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1643R:C -> '0'1542R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1542R:G -> '0'1644R:C: outward } 0 9 {'0'1644R:C -> '0'1542R:G: outward } 0 10 {'0'1543R:G -> '0'1544R:U: adjacent_5p } 0 11 {'0'1544R:U -> '0'1543R:G: adjacent_3p } 0 12 {'0'1543R:G -> '0'1642R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {'0'1642R:A -> '0'1543R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {'0'1544R:U -> '0'1641R:A: pairing antiparallel trans XXIV Ws/Hh } 0 15 {'0'1641R:A -> '0'1544R:U: pairing antiparallel trans XXIV Hh/Ws } 0 16 {'0'1641R:A -> '0'1642R:A: adjacent_5p upward } 0 17 {'0'1642R:A -> '0'1641R:A: adjacent_3p downward } 0 18 {'0'1642R:A -> '0'1643R:C: adjacent_5p upward } 0 19 {'0'1643R:C -> '0'1642R:A: adjacent_3p downward } 0 20 {'0'1643R:C -> '0'1644R:C: adjacent_5p } 0 21 {'0'1644R:C -> '0'1643R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1543R:G 0 1 '0'1544R:U 0 2 '0'1545R:C 0 3 '0'1546R:G 0 4 '0'1639R:U 0 5 '0'1640R:C 0 6 '0'1641R:A 0 7 '0'1642R:A 0 [Edges] 0 {'0'1543R:G -> '0'1544R:U: adjacent_5p } 0 1 {'0'1544R:U -> '0'1543R:G: adjacent_3p } 0 2 {'0'1543R:G -> '0'1642R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {'0'1642R:A -> '0'1543R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {'0'1544R:U -> '0'1545R:C: adjacent_5p upward } 0 5 {'0'1545R:C -> '0'1544R:U: adjacent_3p downward } 0 6 {'0'1544R:U -> '0'1641R:A: pairing antiparallel trans XXIV Ws/Hh } 0 7 {'0'1641R:A -> '0'1544R:U: pairing antiparallel trans XXIV Hh/Ws } 0 8 {'0'1545R:C -> '0'1546R:G: adjacent_5p upward } 0 9 {'0'1546R:G -> '0'1545R:C: adjacent_3p downward } 0 10 {'0'1546R:G -> '0'1639R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'1639R:U -> '0'1546R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'1639R:U -> '0'1640R:C: adjacent_5p upward } 0 13 {'0'1640R:C -> '0'1639R:U: adjacent_3p downward } 0 14 {'0'1640R:C -> '0'1641R:A: adjacent_5p } 0 15 {'0'1641R:A -> '0'1640R:C: adjacent_3p } 0 16 {'0'1641R:A -> '0'1642R:A: adjacent_5p upward } 0 17 {'0'1642R:A -> '0'1641R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '0'1544R:U 0 1 '0'1545R:C 0 2 '0'1546R:G 0 3 '0'1547R:A 0 4 '0'1638R:U 0 5 '0'1639R:U 0 6 '0'1640R:C 0 7 '0'1641R:A 0 [Edges] 0 {'0'1544R:U -> '0'1545R:C: adjacent_5p upward } 0 1 {'0'1545R:C -> '0'1544R:U: adjacent_3p downward } 0 2 {'0'1544R:U -> '0'1641R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {'0'1641R:A -> '0'1544R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {'0'1545R:C -> '0'1546R:G: adjacent_5p upward } 0 5 {'0'1546R:G -> '0'1545R:C: adjacent_3p downward } 0 6 {'0'1546R:G -> '0'1547R:A: adjacent_5p upward } 0 7 {'0'1547R:A -> '0'1546R:G: adjacent_3p downward } 0 8 {'0'1546R:G -> '0'1639R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {'0'1639R:U -> '0'1546R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {'0'1547R:A -> '0'1638R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1638R:U -> '0'1547R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1638R:U -> '0'1639R:U: adjacent_5p upward } 0 13 {'0'1639R:U -> '0'1638R:U: adjacent_3p downward } 0 14 {'0'1639R:U -> '0'1640R:C: adjacent_5p upward } 0 15 {'0'1640R:C -> '0'1639R:U: adjacent_3p downward } 0 16 {'0'1640R:C -> '0'1641R:A: adjacent_5p } 0 17 {'0'1641R:A -> '0'1640R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '0'1546R:G 0 1 '0'1547R:A 0 2 '0'1548R:U 0 3 '0'1549R:C 0 4 '0'1636R:G 0 5 '0'1637R:A 0 6 '0'1638R:U 0 7 '0'1639R:U 0 [Edges] 0 {'0'1546R:G -> '0'1547R:A: adjacent_5p upward } 0 1 {'0'1547R:A -> '0'1546R:G: adjacent_3p downward } 0 2 {'0'1546R:G -> '0'1639R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'1639R:U -> '0'1546R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'1547R:A -> '0'1548R:U: adjacent_5p upward } 0 5 {'0'1548R:U -> '0'1547R:A: adjacent_3p downward } 0 6 {'0'1547R:A -> '0'1638R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1638R:U -> '0'1547R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1548R:U -> '0'1549R:C: adjacent_5p upward } 0 9 {'0'1549R:C -> '0'1548R:U: adjacent_3p downward } 0 10 {'0'1548R:U -> '0'1637R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1637R:A -> '0'1548R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1549R:C -> '0'1636R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1636R:G -> '0'1549R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1636R:G -> '0'1637R:A: adjacent_5p upward } 0 15 {'0'1637R:A -> '0'1636R:G: adjacent_3p downward } 0 16 {'0'1637R:A -> '0'1638R:U: adjacent_5p upward } 0 17 {'0'1638R:U -> '0'1637R:A: adjacent_3p downward } 0 18 {'0'1638R:U -> '0'1639R:U: adjacent_5p upward } 0 19 {'0'1639R:U -> '0'1638R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1547R:A 0 1 '0'1548R:U 0 2 '0'1549R:C 0 3 '0'1550R:A 0 4 '0'1635R:U 0 5 '0'1636R:G 0 6 '0'1637R:A 0 7 '0'1638R:U 0 [Edges] 0 {'0'1547R:A -> '0'1548R:U: adjacent_5p upward } 0 1 {'0'1548R:U -> '0'1547R:A: adjacent_3p downward } 0 2 {'0'1547R:A -> '0'1638R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1638R:U -> '0'1547R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1548R:U -> '0'1549R:C: adjacent_5p upward } 0 5 {'0'1549R:C -> '0'1548R:U: adjacent_3p downward } 0 6 {'0'1548R:U -> '0'1637R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1637R:A -> '0'1548R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1549R:C -> '0'1550R:A: adjacent_5p upward } 0 9 {'0'1550R:A -> '0'1549R:C: adjacent_3p downward } 0 10 {'0'1549R:C -> '0'1636R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1636R:G -> '0'1549R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1550R:A -> '0'1635R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1635R:U -> '0'1550R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1550R:A -> '0'1636R:G: outward } 0 15 {'0'1636R:G -> '0'1550R:A: outward } 0 16 {'0'1635R:U -> '0'1636R:G: adjacent_5p } 0 17 {'0'1636R:G -> '0'1635R:U: adjacent_3p } 0 18 {'0'1636R:G -> '0'1637R:A: adjacent_5p upward } 0 19 {'0'1637R:A -> '0'1636R:G: adjacent_3p downward } 0 20 {'0'1637R:A -> '0'1638R:U: adjacent_5p upward } 0 21 {'0'1638R:U -> '0'1637R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1548R:U 0 1 '0'1549R:C 0 2 '0'1550R:A 0 3 '0'1551R:C 0 4 '0'1634R:G 0 5 '0'1635R:U 0 6 '0'1636R:G 0 7 '0'1637R:A 0 [Edges] 0 {'0'1548R:U -> '0'1549R:C: adjacent_5p upward } 0 1 {'0'1549R:C -> '0'1548R:U: adjacent_3p downward } 0 2 {'0'1548R:U -> '0'1637R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1637R:A -> '0'1548R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1549R:C -> '0'1550R:A: adjacent_5p upward } 0 5 {'0'1550R:A -> '0'1549R:C: adjacent_3p downward } 0 6 {'0'1549R:C -> '0'1636R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1636R:G -> '0'1549R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1550R:A -> '0'1551R:C: adjacent_5p upward } 0 9 {'0'1551R:C -> '0'1550R:A: adjacent_3p downward } 0 10 {'0'1550R:A -> '0'1635R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1635R:U -> '0'1550R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1550R:A -> '0'1636R:G: outward } 0 13 {'0'1636R:G -> '0'1550R:A: outward } 0 14 {'0'1551R:C -> '0'1634R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1634R:G -> '0'1551R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1634R:G -> '0'1635R:U: adjacent_5p upward } 0 17 {'0'1635R:U -> '0'1634R:G: adjacent_3p downward } 0 18 {'0'1635R:U -> '0'1636R:G: adjacent_5p } 0 19 {'0'1636R:G -> '0'1635R:U: adjacent_3p } 0 20 {'0'1636R:G -> '0'1637R:A: adjacent_5p upward } 0 21 {'0'1637R:A -> '0'1636R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1551R:C 0 1 '0'1552R:G 0 2 '0'1553R:C 0 3 '0'1554R:U 0 4 '0'1631R:A 0 5 '0'1632R:A 0 6 '0'1633R:C 0 7 '0'1634R:G 0 [Edges] 0 {'0'1551R:C -> '0'1552R:G: adjacent_5p } 0 1 {'0'1552R:G -> '0'1551R:C: adjacent_3p } 0 2 {'0'1551R:C -> '0'1634R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1634R:G -> '0'1551R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1552R:G -> '0'1553R:C: adjacent_5p upward } 0 5 {'0'1553R:C -> '0'1552R:G: adjacent_3p downward } 0 6 {'0'1552R:G -> '0'1634R:G: outward } 0 7 {'0'1634R:G -> '0'1552R:G: outward } 0 8 {'0'1553R:C -> '0'1554R:U: adjacent_5p upward } 0 9 {'0'1554R:U -> '0'1553R:C: adjacent_3p downward } 0 10 {'0'1554R:U -> '0'1631R:A: pairing antiparallel cis one_hbond Ss/Bs } 0 11 {'0'1631R:A -> '0'1554R:U: pairing antiparallel cis one_hbond Bs/Ss } 0 12 {'0'1631R:A -> '0'1632R:A: adjacent_5p upward } 0 13 {'0'1632R:A -> '0'1631R:A: adjacent_3p downward } 0 14 {'0'1632R:A -> '0'1633R:C: adjacent_5p } 0 15 {'0'1633R:C -> '0'1632R:A: adjacent_3p } 0 16 {'0'1633R:C -> '0'1634R:G: adjacent_5p } 0 17 {'0'1634R:G -> '0'1633R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . 6 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . . . . . 15 . 16 7 3 7 . . . . 17 . [GraphModel] [Vertices] 0 '0'1552R:G 0 1 '0'1553R:C 0 2 '0'1554R:U 0 3 '0'1555R:G 0 4 '0'1566R:C 0 5 '0'1567R:A 0 6 '0'1568R:G 0 7 '0'1569R:U 0 [Edges] 0 {'0'1552R:G -> '0'1553R:C: adjacent_5p upward } 0 1 {'0'1553R:C -> '0'1552R:G: adjacent_3p downward } 0 2 {'0'1552R:G -> '0'1569R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'1569R:U -> '0'1552R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'1553R:C -> '0'1554R:U: adjacent_5p upward } 0 5 {'0'1554R:U -> '0'1553R:C: adjacent_3p downward } 0 6 {'0'1553R:C -> '0'1568R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1568R:G -> '0'1553R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1554R:U -> '0'1555R:G: adjacent_5p } 0 9 {'0'1555R:G -> '0'1554R:U: adjacent_3p } 0 10 {'0'1554R:U -> '0'1567R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1567R:A -> '0'1554R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1555R:G -> '0'1566R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1566R:C -> '0'1555R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1555R:G -> '0'1567R:A: outward } 0 15 {'0'1567R:A -> '0'1555R:G: outward } 0 16 {'0'1566R:C -> '0'1567R:A: adjacent_5p upward } 0 17 {'0'1567R:A -> '0'1566R:C: adjacent_3p downward } 0 18 {'0'1567R:A -> '0'1568R:G: adjacent_5p upward } 0 19 {'0'1568R:G -> '0'1567R:A: adjacent_3p downward } 0 20 {'0'1568R:G -> '0'1569R:U: adjacent_5p upward } 0 21 {'0'1569R:U -> '0'1568R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1553R:C 0 1 '0'1554R:U 0 2 '0'1555R:G 0 3 '0'1556R:G 0 4 '0'1565R:C 0 5 '0'1566R:C 0 6 '0'1567R:A 0 7 '0'1568R:G 0 [Edges] 0 {'0'1553R:C -> '0'1554R:U: adjacent_5p upward } 0 1 {'0'1554R:U -> '0'1553R:C: adjacent_3p downward } 0 2 {'0'1553R:C -> '0'1568R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1568R:G -> '0'1553R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1554R:U -> '0'1555R:G: adjacent_5p } 0 5 {'0'1555R:G -> '0'1554R:U: adjacent_3p } 0 6 {'0'1554R:U -> '0'1567R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1567R:A -> '0'1554R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1555R:G -> '0'1556R:G: adjacent_5p upward } 0 9 {'0'1556R:G -> '0'1555R:G: adjacent_3p downward } 0 10 {'0'1555R:G -> '0'1566R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1566R:C -> '0'1555R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1555R:G -> '0'1567R:A: outward } 0 13 {'0'1567R:A -> '0'1555R:G: outward } 0 14 {'0'1556R:G -> '0'1565R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1565R:C -> '0'1556R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1565R:C -> '0'1566R:C: adjacent_5p upward } 0 17 {'0'1566R:C -> '0'1565R:C: adjacent_3p downward } 0 18 {'0'1566R:C -> '0'1567R:A: adjacent_5p upward } 0 19 {'0'1567R:A -> '0'1566R:C: adjacent_3p downward } 0 20 {'0'1567R:A -> '0'1568R:G: adjacent_5p upward } 0 21 {'0'1568R:G -> '0'1567R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1554R:U 0 1 '0'1555R:G 0 2 '0'1556R:G 0 3 '0'1557R:G 0 4 '0'1564R:C 0 5 '0'1565R:C 0 6 '0'1566R:C 0 7 '0'1567R:A 0 [Edges] 0 {'0'1554R:U -> '0'1555R:G: adjacent_5p } 0 1 {'0'1555R:G -> '0'1554R:U: adjacent_3p } 0 2 {'0'1554R:U -> '0'1567R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1567R:A -> '0'1554R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1555R:G -> '0'1556R:G: adjacent_5p upward } 0 5 {'0'1556R:G -> '0'1555R:G: adjacent_3p downward } 0 6 {'0'1555R:G -> '0'1566R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1566R:C -> '0'1555R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1555R:G -> '0'1567R:A: outward } 0 9 {'0'1567R:A -> '0'1555R:G: outward } 0 10 {'0'1556R:G -> '0'1557R:G: adjacent_5p upward } 0 11 {'0'1557R:G -> '0'1556R:G: adjacent_3p downward } 0 12 {'0'1556R:G -> '0'1565R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1565R:C -> '0'1556R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1557R:G -> '0'1564R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1564R:C -> '0'1557R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1564R:C -> '0'1565R:C: adjacent_5p upward } 0 17 {'0'1565R:C -> '0'1564R:C: adjacent_3p downward } 0 18 {'0'1565R:C -> '0'1566R:C: adjacent_5p upward } 0 19 {'0'1566R:C -> '0'1565R:C: adjacent_3p downward } 0 20 {'0'1566R:C -> '0'1567R:A: adjacent_5p upward } 0 21 {'0'1567R:A -> '0'1566R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1555R:G 0 1 '0'1556R:G 0 2 '0'1557R:G 0 3 '0'1558R:C 0 4 '0'1563R:G 0 5 '0'1564R:C 0 6 '0'1565R:C 0 7 '0'1566R:C 0 [Edges] 0 {'0'1555R:G -> '0'1556R:G: adjacent_5p upward } 0 1 {'0'1556R:G -> '0'1555R:G: adjacent_3p downward } 0 2 {'0'1555R:G -> '0'1566R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1566R:C -> '0'1555R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1556R:G -> '0'1557R:G: adjacent_5p upward } 0 5 {'0'1557R:G -> '0'1556R:G: adjacent_3p downward } 0 6 {'0'1556R:G -> '0'1565R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1565R:C -> '0'1556R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1557R:G -> '0'1558R:C: adjacent_5p upward } 0 9 {'0'1558R:C -> '0'1557R:G: adjacent_3p downward } 0 10 {'0'1557R:G -> '0'1564R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1564R:C -> '0'1557R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1558R:C -> '0'1563R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 13 {'0'1563R:G -> '0'1558R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 14 {'0'1563R:G -> '0'1564R:C: adjacent_5p } 0 15 {'0'1564R:C -> '0'1563R:G: adjacent_3p } 0 16 {'0'1564R:C -> '0'1565R:C: adjacent_5p upward } 0 17 {'0'1565R:C -> '0'1564R:C: adjacent_3p downward } 0 18 {'0'1565R:C -> '0'1566R:C: adjacent_5p upward } 0 19 {'0'1566R:C -> '0'1565R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1572R:A 0 1 '0'1573R:A 0 2 '0'1574R:C 0 3 '0'1575R:C 0 4 '0'1621R:G 0 5 '0'1622R:G 0 6 '0'1623R:C 0 7 '0'1624R:A 0 [Edges] 0 {'0'1572R:A -> '0'1573R:A: adjacent_5p upward } 0 1 {'0'1573R:A -> '0'1572R:A: adjacent_3p downward } 0 2 {'0'1572R:A -> '0'1624R:A: pairing parallel trans II Hh/Hh } 0 3 {'0'1624R:A -> '0'1572R:A: pairing parallel trans II Hh/Hh } 0 4 {'0'1573R:A -> '0'1574R:C: adjacent_5p upward } 0 5 {'0'1574R:C -> '0'1573R:A: adjacent_3p downward } 0 6 {'0'1573R:A -> '0'1623R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 7 {'0'1623R:C -> '0'1573R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 8 {'0'1574R:C -> '0'1575R:C: adjacent_5p upward } 0 9 {'0'1575R:C -> '0'1574R:C: adjacent_3p downward } 0 10 {'0'1574R:C -> '0'1622R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1622R:G -> '0'1574R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1575R:C -> '0'1621R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1621R:G -> '0'1575R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1621R:G -> '0'1622R:G: adjacent_5p upward } 0 15 {'0'1622R:G -> '0'1621R:G: adjacent_3p downward } 0 16 {'0'1622R:G -> '0'1623R:C: adjacent_5p upward } 0 17 {'0'1623R:C -> '0'1622R:G: adjacent_3p downward } 0 18 {'0'1623R:C -> '0'1624R:A: adjacent_5p inward } 0 19 {'0'1624R:A -> '0'1623R:C: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1573R:A 0 1 '0'1574R:C 0 2 '0'1575R:C 0 3 '0'1576R:G 0 4 '0'1620R:C 0 5 '0'1621R:G 0 6 '0'1622R:G 0 7 '0'1623R:C 0 [Edges] 0 {'0'1573R:A -> '0'1574R:C: adjacent_5p upward } 0 1 {'0'1574R:C -> '0'1573R:A: adjacent_3p downward } 0 2 {'0'1573R:A -> '0'1623R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 3 {'0'1623R:C -> '0'1573R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 4 {'0'1574R:C -> '0'1575R:C: adjacent_5p upward } 0 5 {'0'1575R:C -> '0'1574R:C: adjacent_3p downward } 0 6 {'0'1574R:C -> '0'1622R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1622R:G -> '0'1574R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1575R:C -> '0'1576R:G: adjacent_5p upward } 0 9 {'0'1576R:G -> '0'1575R:C: adjacent_3p downward } 0 10 {'0'1575R:C -> '0'1621R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1621R:G -> '0'1575R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1576R:G -> '0'1620R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1620R:C -> '0'1576R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1576R:G -> '0'1621R:G: outward } 0 15 {'0'1621R:G -> '0'1576R:G: outward } 0 16 {'0'1620R:C -> '0'1621R:G: adjacent_5p upward } 0 17 {'0'1621R:G -> '0'1620R:C: adjacent_3p downward } 0 18 {'0'1621R:G -> '0'1622R:G: adjacent_5p upward } 0 19 {'0'1622R:G -> '0'1621R:G: adjacent_3p downward } 0 20 {'0'1622R:G -> '0'1623R:C: adjacent_5p upward } 0 21 {'0'1623R:C -> '0'1622R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1574R:C 0 1 '0'1575R:C 0 2 '0'1576R:G 0 3 '0'1577R:U 0 4 '0'1619R:G 0 5 '0'1620R:C 0 6 '0'1621R:G 0 7 '0'1622R:G 0 [Edges] 0 {'0'1574R:C -> '0'1575R:C: adjacent_5p upward } 0 1 {'0'1575R:C -> '0'1574R:C: adjacent_3p downward } 0 2 {'0'1574R:C -> '0'1622R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1622R:G -> '0'1574R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1575R:C -> '0'1576R:G: adjacent_5p upward } 0 5 {'0'1576R:G -> '0'1575R:C: adjacent_3p downward } 0 6 {'0'1575R:C -> '0'1621R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1621R:G -> '0'1575R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1576R:G -> '0'1577R:U: adjacent_5p upward } 0 9 {'0'1577R:U -> '0'1576R:G: adjacent_3p downward } 0 10 {'0'1576R:G -> '0'1620R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1620R:C -> '0'1576R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1576R:G -> '0'1621R:G: outward } 0 13 {'0'1621R:G -> '0'1576R:G: outward } 0 14 {'0'1577R:U -> '0'1619R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {'0'1619R:G -> '0'1577R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {'0'1619R:G -> '0'1620R:C: adjacent_5p upward } 0 17 {'0'1620R:C -> '0'1619R:G: adjacent_3p downward } 0 18 {'0'1620R:C -> '0'1621R:G: adjacent_5p upward } 0 19 {'0'1621R:G -> '0'1620R:C: adjacent_3p downward } 0 20 {'0'1621R:G -> '0'1622R:G: adjacent_5p upward } 0 21 {'0'1622R:G -> '0'1621R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1575R:C 0 1 '0'1576R:G 0 2 '0'1577R:U 0 3 '0'1578R:C 0 4 '0'1618R:G 0 5 '0'1619R:G 0 6 '0'1620R:C 0 7 '0'1621R:G 0 [Edges] 0 {'0'1575R:C -> '0'1576R:G: adjacent_5p upward } 0 1 {'0'1576R:G -> '0'1575R:C: adjacent_3p downward } 0 2 {'0'1575R:C -> '0'1621R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1621R:G -> '0'1575R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1576R:G -> '0'1577R:U: adjacent_5p upward } 0 5 {'0'1577R:U -> '0'1576R:G: adjacent_3p downward } 0 6 {'0'1576R:G -> '0'1620R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1620R:C -> '0'1576R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1576R:G -> '0'1621R:G: outward } 0 9 {'0'1621R:G -> '0'1576R:G: outward } 0 10 {'0'1577R:U -> '0'1578R:C: adjacent_5p } 0 11 {'0'1578R:C -> '0'1577R:U: adjacent_3p } 0 12 {'0'1577R:U -> '0'1619R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {'0'1619R:G -> '0'1577R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {'0'1578R:C -> '0'1618R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1618R:G -> '0'1578R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1618R:G -> '0'1619R:G: adjacent_5p upward } 0 17 {'0'1619R:G -> '0'1618R:G: adjacent_3p downward } 0 18 {'0'1619R:G -> '0'1620R:C: adjacent_5p upward } 0 19 {'0'1620R:C -> '0'1619R:G: adjacent_3p downward } 0 20 {'0'1620R:C -> '0'1621R:G: adjacent_5p upward } 0 21 {'0'1621R:G -> '0'1620R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1579R:C 0 1 '0'1580R:A 0 2 '0'1581R:A 0 3 '0'1582R:C 0 4 '0'1613R:C 0 5 '0'1614R:G 0 6 '0'1615R:A 0 7 '0'1616R:A 0 [Edges] 0 {'0'1579R:C -> '0'1580R:A: adjacent_5p } 0 1 {'0'1580R:A -> '0'1579R:C: adjacent_3p } 0 2 {'0'1579R:C -> '0'1616R:A: pairing antiparallel trans XXV Ww/Hh } 0 3 {'0'1616R:A -> '0'1579R:C: pairing antiparallel trans XXV Hh/Ww } 0 4 {'0'1580R:A -> '0'1581R:A: adjacent_5p upward } 0 5 {'0'1581R:A -> '0'1580R:A: adjacent_3p downward } 0 6 {'0'1580R:A -> '0'1615R:A: outward } 0 7 {'0'1615R:A -> '0'1580R:A: outward } 0 8 {'0'1581R:A -> '0'1582R:C: adjacent_5p upward } 0 9 {'0'1582R:C -> '0'1581R:A: adjacent_3p downward } 0 10 {'0'1581R:A -> '0'1614R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {'0'1614R:G -> '0'1581R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {'0'1582R:C -> '0'1613R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 13 {'0'1613R:C -> '0'1582R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 14 {'0'1613R:C -> '0'1614R:G: adjacent_5p upward } 0 15 {'0'1614R:G -> '0'1613R:C: adjacent_3p downward } 0 16 {'0'1614R:G -> '0'1615R:A: adjacent_5p } 0 17 {'0'1615R:A -> '0'1614R:G: adjacent_3p } 0 18 {'0'1615R:A -> '0'1616R:A: adjacent_5p upward } 0 19 {'0'1616R:A -> '0'1615R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1581R:A 0 1 '0'1582R:C 0 2 '0'1583R:U 0 3 '0'1584R:C 0 4 '0'1611R:G 0 5 '0'1612R:A 0 6 '0'1613R:C 0 7 '0'1614R:G 0 [Edges] 0 {'0'1581R:A -> '0'1582R:C: adjacent_5p upward } 0 1 {'0'1582R:C -> '0'1581R:A: adjacent_3p downward } 0 2 {'0'1581R:A -> '0'1614R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'1614R:G -> '0'1581R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'1582R:C -> '0'1583R:U: adjacent_5p upward } 0 5 {'0'1583R:U -> '0'1582R:C: adjacent_3p downward } 0 6 {'0'1582R:C -> '0'1613R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 7 {'0'1613R:C -> '0'1582R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 8 {'0'1583R:U -> '0'1584R:C: adjacent_5p upward } 0 9 {'0'1584R:C -> '0'1583R:U: adjacent_3p downward } 0 10 {'0'1583R:U -> '0'1612R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1612R:A -> '0'1583R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1584R:C -> '0'1611R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1611R:G -> '0'1584R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1611R:G -> '0'1612R:A: adjacent_5p upward } 0 15 {'0'1612R:A -> '0'1611R:G: adjacent_3p downward } 0 16 {'0'1612R:A -> '0'1613R:C: adjacent_5p upward } 0 17 {'0'1613R:C -> '0'1612R:A: adjacent_3p downward } 0 18 {'0'1613R:C -> '0'1614R:G: adjacent_5p upward } 0 19 {'0'1614R:G -> '0'1613R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1582R:C 0 1 '0'1583R:U 0 2 '0'1584R:C 0 3 '0'1585R:C 0 4 '0'1610R:G 0 5 '0'1611R:G 0 6 '0'1612R:A 0 7 '0'1613R:C 0 [Edges] 0 {'0'1582R:C -> '0'1583R:U: adjacent_5p upward } 0 1 {'0'1583R:U -> '0'1582R:C: adjacent_3p downward } 0 2 {'0'1582R:C -> '0'1613R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 3 {'0'1613R:C -> '0'1582R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 4 {'0'1583R:U -> '0'1584R:C: adjacent_5p upward } 0 5 {'0'1584R:C -> '0'1583R:U: adjacent_3p downward } 0 6 {'0'1583R:U -> '0'1612R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1612R:A -> '0'1583R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1584R:C -> '0'1585R:C: adjacent_5p } 0 9 {'0'1585R:C -> '0'1584R:C: adjacent_3p } 0 10 {'0'1584R:C -> '0'1611R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1611R:G -> '0'1584R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1585R:C -> '0'1610R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1610R:G -> '0'1585R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1610R:G -> '0'1611R:G: adjacent_5p upward } 0 15 {'0'1611R:G -> '0'1610R:G: adjacent_3p downward } 0 16 {'0'1611R:G -> '0'1612R:A: adjacent_5p upward } 0 17 {'0'1612R:A -> '0'1611R:G: adjacent_3p downward } 0 18 {'0'1612R:A -> '0'1613R:C: adjacent_5p upward } 0 19 {'0'1613R:C -> '0'1612R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1583R:U 0 1 '0'1584R:C 0 2 '0'1585R:C 0 3 '0'1586R:G 0 4 '0'1609R:C 0 5 '0'1610R:G 0 6 '0'1611R:G 0 7 '0'1612R:A 0 [Edges] 0 {'0'1583R:U -> '0'1584R:C: adjacent_5p upward } 0 1 {'0'1584R:C -> '0'1583R:U: adjacent_3p downward } 0 2 {'0'1583R:U -> '0'1612R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1612R:A -> '0'1583R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1584R:C -> '0'1585R:C: adjacent_5p } 0 5 {'0'1585R:C -> '0'1584R:C: adjacent_3p } 0 6 {'0'1584R:C -> '0'1611R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1611R:G -> '0'1584R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1585R:C -> '0'1586R:G: adjacent_5p upward } 0 9 {'0'1586R:G -> '0'1585R:C: adjacent_3p downward } 0 10 {'0'1585R:C -> '0'1610R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1610R:G -> '0'1585R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1586R:G -> '0'1609R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1609R:C -> '0'1586R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1586R:G -> '0'1610R:G: outward } 0 15 {'0'1610R:G -> '0'1586R:G: outward } 0 16 {'0'1609R:C -> '0'1610R:G: adjacent_5p upward } 0 17 {'0'1610R:G -> '0'1609R:C: adjacent_3p downward } 0 18 {'0'1610R:G -> '0'1611R:G: adjacent_5p upward } 0 19 {'0'1611R:G -> '0'1610R:G: adjacent_3p downward } 0 20 {'0'1611R:G -> '0'1612R:A: adjacent_5p upward } 0 21 {'0'1612R:A -> '0'1611R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1584R:C 0 1 '0'1585R:C 0 2 '0'1586R:G 0 3 '0'1587R:U 0 4 '0'1608R:G 0 5 '0'1609R:C 0 6 '0'1610R:G 0 7 '0'1611R:G 0 [Edges] 0 {'0'1584R:C -> '0'1585R:C: adjacent_5p } 0 1 {'0'1585R:C -> '0'1584R:C: adjacent_3p } 0 2 {'0'1584R:C -> '0'1611R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1611R:G -> '0'1584R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1585R:C -> '0'1586R:G: adjacent_5p upward } 0 5 {'0'1586R:G -> '0'1585R:C: adjacent_3p downward } 0 6 {'0'1585R:C -> '0'1610R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1610R:G -> '0'1585R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1586R:G -> '0'1587R:U: adjacent_5p upward } 0 9 {'0'1587R:U -> '0'1586R:G: adjacent_3p downward } 0 10 {'0'1586R:G -> '0'1609R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1609R:C -> '0'1586R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1586R:G -> '0'1610R:G: outward } 0 13 {'0'1610R:G -> '0'1586R:G: outward } 0 14 {'0'1587R:U -> '0'1608R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {'0'1608R:G -> '0'1587R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {'0'1608R:G -> '0'1609R:C: adjacent_5p upward } 0 17 {'0'1609R:C -> '0'1608R:G: adjacent_3p downward } 0 18 {'0'1609R:C -> '0'1610R:G: adjacent_5p upward } 0 19 {'0'1610R:G -> '0'1609R:C: adjacent_3p downward } 0 20 {'0'1610R:G -> '0'1611R:G: adjacent_5p upward } 0 21 {'0'1611R:G -> '0'1610R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1585R:C 0 1 '0'1586R:G 0 2 '0'1587R:U 0 3 '0'1588R:G 0 4 '0'1607R:A 0 5 '0'1608R:G 0 6 '0'1609R:C 0 7 '0'1610R:G 0 [Edges] 0 {'0'1585R:C -> '0'1586R:G: adjacent_5p upward } 0 1 {'0'1586R:G -> '0'1585R:C: adjacent_3p downward } 0 2 {'0'1585R:C -> '0'1610R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1610R:G -> '0'1585R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1586R:G -> '0'1587R:U: adjacent_5p upward } 0 5 {'0'1587R:U -> '0'1586R:G: adjacent_3p downward } 0 6 {'0'1586R:G -> '0'1609R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1609R:C -> '0'1586R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1586R:G -> '0'1610R:G: outward } 0 9 {'0'1610R:G -> '0'1586R:G: outward } 0 10 {'0'1587R:U -> '0'1588R:G: adjacent_5p upward } 0 11 {'0'1588R:G -> '0'1587R:U: adjacent_3p downward } 0 12 {'0'1587R:U -> '0'1608R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {'0'1608R:G -> '0'1587R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {'0'1588R:G -> '0'1607R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {'0'1607R:A -> '0'1588R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {'0'1607R:A -> '0'1608R:G: adjacent_5p upward } 0 17 {'0'1608R:G -> '0'1607R:A: adjacent_3p downward } 0 18 {'0'1608R:G -> '0'1609R:C: adjacent_5p upward } 0 19 {'0'1609R:C -> '0'1608R:G: adjacent_3p downward } 0 20 {'0'1609R:C -> '0'1610R:G: adjacent_5p upward } 0 21 {'0'1610R:G -> '0'1609R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1586R:G 0 1 '0'1587R:U 0 2 '0'1588R:G 0 3 '0'1589R:G 0 4 '0'1606R:A 0 5 '0'1607R:A 0 6 '0'1608R:G 0 7 '0'1609R:C 0 [Edges] 0 {'0'1586R:G -> '0'1587R:U: adjacent_5p upward } 0 1 {'0'1587R:U -> '0'1586R:G: adjacent_3p downward } 0 2 {'0'1586R:G -> '0'1609R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1609R:C -> '0'1586R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1587R:U -> '0'1588R:G: adjacent_5p upward } 0 5 {'0'1588R:G -> '0'1587R:U: adjacent_3p downward } 0 6 {'0'1587R:U -> '0'1608R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'1608R:G -> '0'1587R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'1588R:G -> '0'1589R:G: adjacent_5p upward } 0 9 {'0'1589R:G -> '0'1588R:G: adjacent_3p downward } 0 10 {'0'1588R:G -> '0'1607R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {'0'1607R:A -> '0'1588R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {'0'1589R:G -> '0'1606R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {'0'1606R:A -> '0'1589R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {'0'1606R:A -> '0'1607R:A: adjacent_5p upward } 0 15 {'0'1607R:A -> '0'1606R:A: adjacent_3p downward } 0 16 {'0'1607R:A -> '0'1608R:G: adjacent_5p upward } 0 17 {'0'1608R:G -> '0'1607R:A: adjacent_3p downward } 0 18 {'0'1608R:G -> '0'1609R:C: adjacent_5p upward } 0 19 {'0'1609R:C -> '0'1608R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1587R:U 0 1 '0'1588R:G 0 2 '0'1589R:G 0 3 '0'1590R:A 0 4 '0'1605R:G 0 5 '0'1606R:A 0 6 '0'1607R:A 0 7 '0'1608R:G 0 [Edges] 0 {'0'1587R:U -> '0'1588R:G: adjacent_5p upward } 0 1 {'0'1588R:G -> '0'1587R:U: adjacent_3p downward } 0 2 {'0'1587R:U -> '0'1608R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'1608R:G -> '0'1587R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'1588R:G -> '0'1589R:G: adjacent_5p upward } 0 5 {'0'1589R:G -> '0'1588R:G: adjacent_3p downward } 0 6 {'0'1588R:G -> '0'1607R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {'0'1607R:A -> '0'1588R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {'0'1589R:G -> '0'1590R:A: adjacent_5p } 0 9 {'0'1590R:A -> '0'1589R:G: adjacent_3p } 0 10 {'0'1589R:G -> '0'1606R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 11 {'0'1606R:A -> '0'1589R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 12 {'0'1590R:A -> '0'1605R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {'0'1605R:G -> '0'1590R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {'0'1590R:A -> '0'1606R:A: outward } 0 15 {'0'1606R:A -> '0'1590R:A: outward } 0 16 {'0'1605R:G -> '0'1606R:A: adjacent_5p } 0 17 {'0'1606R:A -> '0'1605R:G: adjacent_3p } 0 18 {'0'1606R:A -> '0'1607R:A: adjacent_5p upward } 0 19 {'0'1607R:A -> '0'1606R:A: adjacent_3p downward } 0 20 {'0'1607R:A -> '0'1608R:G: adjacent_5p upward } 0 21 {'0'1608R:G -> '0'1607R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1703R:G 0 1 '0'1704R:G 0 2 '0'1705R:C 0 3 '0'1706R:G 0 4 '0'1712R:A 0 5 '0'1713R:G 0 6 '0'1714R:C 0 7 '0'1715R:C 0 [Edges] 0 {'0'1703R:G -> '0'1704R:G: adjacent_5p upward } 0 1 {'0'1704R:G -> '0'1703R:G: adjacent_3p downward } 0 2 {'0'1703R:G -> '0'1715R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1715R:C -> '0'1703R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1704R:G -> '0'1705R:C: adjacent_5p upward } 0 5 {'0'1705R:C -> '0'1704R:G: adjacent_3p downward } 0 6 {'0'1704R:G -> '0'1714R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1714R:C -> '0'1704R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1705R:C -> '0'1706R:G: adjacent_5p upward } 0 9 {'0'1706R:G -> '0'1705R:C: adjacent_3p downward } 0 10 {'0'1705R:C -> '0'1713R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1713R:G -> '0'1705R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1706R:G -> '0'1712R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {'0'1712R:A -> '0'1706R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {'0'1712R:A -> '0'1713R:G: adjacent_5p upward } 0 15 {'0'1713R:G -> '0'1712R:A: adjacent_3p downward } 0 16 {'0'1713R:G -> '0'1714R:C: adjacent_5p upward } 0 17 {'0'1714R:C -> '0'1713R:G: adjacent_3p downward } 0 18 {'0'1714R:C -> '0'1715R:C: adjacent_5p upward } 0 19 {'0'1715R:C -> '0'1714R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1704R:G 0 1 '0'1705R:C 0 2 '0'1706R:G 0 3 '0'1707R:G 0 4 '0'1711R:A 0 5 '0'1712R:A 0 6 '0'1713R:G 0 7 '0'1714R:C 0 [Edges] 0 {'0'1704R:G -> '0'1705R:C: adjacent_5p upward } 0 1 {'0'1705R:C -> '0'1704R:G: adjacent_3p downward } 0 2 {'0'1704R:G -> '0'1714R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1714R:C -> '0'1704R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1705R:C -> '0'1706R:G: adjacent_5p upward } 0 5 {'0'1706R:G -> '0'1705R:C: adjacent_3p downward } 0 6 {'0'1705R:C -> '0'1713R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1713R:G -> '0'1705R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1706R:G -> '0'1707R:G: adjacent_5p upward } 0 9 {'0'1707R:G -> '0'1706R:G: adjacent_3p downward } 0 10 {'0'1706R:G -> '0'1712R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {'0'1712R:A -> '0'1706R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {'0'1707R:G -> '0'1711R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {'0'1711R:A -> '0'1707R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {'0'1711R:A -> '0'1712R:A: adjacent_5p upward } 0 15 {'0'1712R:A -> '0'1711R:A: adjacent_3p downward } 0 16 {'0'1712R:A -> '0'1713R:G: adjacent_5p upward } 0 17 {'0'1713R:G -> '0'1712R:A: adjacent_3p downward } 0 18 {'0'1713R:G -> '0'1714R:C: adjacent_5p upward } 0 19 {'0'1714R:C -> '0'1713R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1725R:C 0 1 '0'1726R:G 0 2 '0'1727R:G 0 3 '0'1728R:G 0 4 '0'2047R:C 0 5 '0'2048R:C 0 6 '0'2049R:C 0 7 '0'2050R:G 0 [Edges] 0 {'0'1725R:C -> '0'1726R:G: adjacent_5p upward } 0 1 {'0'1726R:G -> '0'1725R:C: adjacent_3p downward } 0 2 {'0'1725R:C -> '0'2050R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2050R:G -> '0'1725R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1726R:G -> '0'1727R:G: adjacent_5p upward } 0 5 {'0'1727R:G -> '0'1726R:G: adjacent_3p downward } 0 6 {'0'1726R:G -> '0'2049R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2049R:C -> '0'1726R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1726R:G -> '0'2050R:G: outward } 0 9 {'0'2050R:G -> '0'1726R:G: outward } 0 10 {'0'1727R:G -> '0'1728R:G: adjacent_5p upward } 0 11 {'0'1728R:G -> '0'1727R:G: adjacent_3p downward } 0 12 {'0'1727R:G -> '0'2048R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2048R:C -> '0'1727R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1728R:G -> '0'2047R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2047R:C -> '0'1728R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2047R:C -> '0'2048R:C: adjacent_5p } 0 17 {'0'2048R:C -> '0'2047R:C: adjacent_3p } 0 18 {'0'2048R:C -> '0'2049R:C: adjacent_5p upward } 0 19 {'0'2049R:C -> '0'2048R:C: adjacent_3p downward } 0 20 {'0'2049R:C -> '0'2050R:G: adjacent_5p } 0 21 {'0'2050R:G -> '0'2049R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1733R:A 0 1 '0'1734R:C 0 2 '0'1735R:C 0 3 '0'1736R:A 0 4 '0'2043R:U 0 5 '0'2044R:G 0 6 '0'2045R:G 0 7 '0'2046R:G 0 [Edges] 0 {'0'1733R:A -> '0'1734R:C: adjacent_5p upward } 0 1 {'0'1734R:C -> '0'1733R:A: adjacent_3p downward } 0 2 {'0'1733R:A -> '0'2046R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'2046R:G -> '0'1733R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'1734R:C -> '0'1735R:C: adjacent_5p } 0 5 {'0'1735R:C -> '0'1734R:C: adjacent_3p } 0 6 {'0'1734R:C -> '0'2045R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2045R:G -> '0'1734R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1735R:C -> '0'1736R:A: adjacent_5p upward } 0 9 {'0'1736R:A -> '0'1735R:C: adjacent_3p downward } 0 10 {'0'1735R:C -> '0'2044R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2044R:G -> '0'1735R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1736R:A -> '0'2043R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2043R:U -> '0'1736R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1736R:A -> '0'2044R:G: outward } 0 15 {'0'2044R:G -> '0'1736R:A: outward } 0 16 {'0'2043R:U -> '0'2044R:G: adjacent_5p upward } 0 17 {'0'2044R:G -> '0'2043R:U: adjacent_3p downward } 0 18 {'0'2044R:G -> '0'2045R:G: adjacent_5p upward } 0 19 {'0'2045R:G -> '0'2044R:G: adjacent_3p downward } 0 20 {'0'2045R:G -> '0'2046R:G: adjacent_5p upward } 0 21 {'0'2046R:G -> '0'2045R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1734R:C 0 1 '0'1735R:C 0 2 '0'1736R:A 0 3 '0'1737R:A 0 4 '0'2042R:U 0 5 '0'2043R:U 0 6 '0'2044R:G 0 7 '0'2045R:G 0 [Edges] 0 {'0'1734R:C -> '0'1735R:C: adjacent_5p } 0 1 {'0'1735R:C -> '0'1734R:C: adjacent_3p } 0 2 {'0'1734R:C -> '0'2045R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2045R:G -> '0'1734R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1735R:C -> '0'1736R:A: adjacent_5p upward } 0 5 {'0'1736R:A -> '0'1735R:C: adjacent_3p downward } 0 6 {'0'1735R:C -> '0'2044R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2044R:G -> '0'1735R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1736R:A -> '0'1737R:A: adjacent_5p upward } 0 9 {'0'1737R:A -> '0'1736R:A: adjacent_3p downward } 0 10 {'0'1736R:A -> '0'2043R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2043R:U -> '0'1736R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1736R:A -> '0'2044R:G: outward } 0 13 {'0'2044R:G -> '0'1736R:A: outward } 0 14 {'0'1737R:A -> '0'2042R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2042R:U -> '0'1737R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2042R:U -> '0'2043R:U: adjacent_5p upward } 0 17 {'0'2043R:U -> '0'2042R:U: adjacent_3p downward } 0 18 {'0'2043R:U -> '0'2044R:G: adjacent_5p upward } 0 19 {'0'2044R:G -> '0'2043R:U: adjacent_3p downward } 0 20 {'0'2044R:G -> '0'2045R:G: adjacent_5p upward } 0 21 {'0'2045R:G -> '0'2044R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1735R:C 0 1 '0'1736R:A 0 2 '0'1737R:A 0 3 '0'1738R:C 0 4 '0'2041R:G 0 5 '0'2042R:U 0 6 '0'2043R:U 0 7 '0'2044R:G 0 [Edges] 0 {'0'1735R:C -> '0'1736R:A: adjacent_5p upward } 0 1 {'0'1736R:A -> '0'1735R:C: adjacent_3p downward } 0 2 {'0'1735R:C -> '0'2044R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2044R:G -> '0'1735R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1736R:A -> '0'1737R:A: adjacent_5p upward } 0 5 {'0'1737R:A -> '0'1736R:A: adjacent_3p downward } 0 6 {'0'1736R:A -> '0'2043R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2043R:U -> '0'1736R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1736R:A -> '0'2044R:G: outward } 0 9 {'0'2044R:G -> '0'1736R:A: outward } 0 10 {'0'1737R:A -> '0'1738R:C: adjacent_5p upward } 0 11 {'0'1738R:C -> '0'1737R:A: adjacent_3p downward } 0 12 {'0'1737R:A -> '0'2042R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2042R:U -> '0'1737R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1738R:C -> '0'2041R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2041R:G -> '0'1738R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2041R:G -> '0'2042R:U: adjacent_5p upward } 0 17 {'0'2042R:U -> '0'2041R:G: adjacent_3p downward } 0 18 {'0'2042R:U -> '0'2043R:U: adjacent_5p upward } 0 19 {'0'2043R:U -> '0'2042R:U: adjacent_3p downward } 0 20 {'0'2043R:U -> '0'2044R:G: adjacent_5p upward } 0 21 {'0'2044R:G -> '0'2043R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1736R:A 0 1 '0'1737R:A 0 2 '0'1738R:C 0 3 '0'1739R:G 0 4 '0'2040R:C 0 5 '0'2041R:G 0 6 '0'2042R:U 0 7 '0'2043R:U 0 [Edges] 0 {'0'1736R:A -> '0'1737R:A: adjacent_5p upward } 0 1 {'0'1737R:A -> '0'1736R:A: adjacent_3p downward } 0 2 {'0'1736R:A -> '0'2043R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2043R:U -> '0'1736R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1737R:A -> '0'1738R:C: adjacent_5p upward } 0 5 {'0'1738R:C -> '0'1737R:A: adjacent_3p downward } 0 6 {'0'1737R:A -> '0'2042R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2042R:U -> '0'1737R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1738R:C -> '0'1739R:G: adjacent_5p } 0 9 {'0'1739R:G -> '0'1738R:C: adjacent_3p } 0 10 {'0'1738R:C -> '0'2041R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2041R:G -> '0'1738R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1739R:G -> '0'2040R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2040R:C -> '0'1739R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1739R:G -> '0'2041R:G: outward } 0 15 {'0'2041R:G -> '0'1739R:G: outward } 0 16 {'0'2040R:C -> '0'2041R:G: adjacent_5p upward } 0 17 {'0'2041R:G -> '0'2040R:C: adjacent_3p downward } 0 18 {'0'2041R:G -> '0'2042R:U: adjacent_5p upward } 0 19 {'0'2042R:U -> '0'2041R:G: adjacent_3p downward } 0 20 {'0'2042R:U -> '0'2043R:U: adjacent_5p upward } 0 21 {'0'2043R:U -> '0'2042R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1737R:A 0 1 '0'1738R:C 0 2 '0'1739R:G 0 3 '0'1740R:U 0 4 '0'2039R:A 0 5 '0'2040R:C 0 6 '0'2041R:G 0 7 '0'2042R:U 0 [Edges] 0 {'0'1737R:A -> '0'1738R:C: adjacent_5p upward } 0 1 {'0'1738R:C -> '0'1737R:A: adjacent_3p downward } 0 2 {'0'1737R:A -> '0'2042R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2042R:U -> '0'1737R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1738R:C -> '0'1739R:G: adjacent_5p } 0 5 {'0'1739R:G -> '0'1738R:C: adjacent_3p } 0 6 {'0'1738R:C -> '0'2041R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2041R:G -> '0'1738R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1739R:G -> '0'1740R:U: adjacent_5p upward } 0 9 {'0'1740R:U -> '0'1739R:G: adjacent_3p downward } 0 10 {'0'1739R:G -> '0'2040R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2040R:C -> '0'1739R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1739R:G -> '0'2041R:G: outward } 0 13 {'0'2041R:G -> '0'1739R:G: outward } 0 14 {'0'1740R:U -> '0'2039R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2039R:A -> '0'1740R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2039R:A -> '0'2040R:C: adjacent_5p upward } 0 17 {'0'2040R:C -> '0'2039R:A: adjacent_3p downward } 0 18 {'0'2040R:C -> '0'2041R:G: adjacent_5p upward } 0 19 {'0'2041R:G -> '0'2040R:C: adjacent_3p downward } 0 20 {'0'2041R:G -> '0'2042R:U: adjacent_5p upward } 0 21 {'0'2042R:U -> '0'2041R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1738R:C 0 1 '0'1739R:G 0 2 '0'1740R:U 0 3 '0'1741R:U 0 4 '0'2038R:A 0 5 '0'2039R:A 0 6 '0'2040R:C 0 7 '0'2041R:G 0 [Edges] 0 {'0'1738R:C -> '0'1739R:G: adjacent_5p } 0 1 {'0'1739R:G -> '0'1738R:C: adjacent_3p } 0 2 {'0'1738R:C -> '0'2041R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2041R:G -> '0'1738R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1739R:G -> '0'1740R:U: adjacent_5p upward } 0 5 {'0'1740R:U -> '0'1739R:G: adjacent_3p downward } 0 6 {'0'1739R:G -> '0'2040R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2040R:C -> '0'1739R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1739R:G -> '0'2041R:G: outward } 0 9 {'0'2041R:G -> '0'1739R:G: outward } 0 10 {'0'1740R:U -> '0'1741R:U: adjacent_5p upward } 0 11 {'0'1741R:U -> '0'1740R:U: adjacent_3p downward } 0 12 {'0'1740R:U -> '0'2039R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2039R:A -> '0'1740R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1741R:U -> '0'2038R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2038R:A -> '0'1741R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2038R:A -> '0'2039R:A: adjacent_5p upward } 0 17 {'0'2039R:A -> '0'2038R:A: adjacent_3p downward } 0 18 {'0'2039R:A -> '0'2040R:C: adjacent_5p upward } 0 19 {'0'2040R:C -> '0'2039R:A: adjacent_3p downward } 0 20 {'0'2040R:C -> '0'2041R:G: adjacent_5p upward } 0 21 {'0'2041R:G -> '0'2040R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1739R:G 0 1 '0'1740R:U 0 2 '0'1741R:U 0 3 '0'1742R:A 0 4 '0'2037R:C 0 5 '0'2038R:A 0 6 '0'2039R:A 0 7 '0'2040R:C 0 [Edges] 0 {'0'1739R:G -> '0'1740R:U: adjacent_5p upward } 0 1 {'0'1740R:U -> '0'1739R:G: adjacent_3p downward } 0 2 {'0'1739R:G -> '0'2040R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2040R:C -> '0'1739R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1740R:U -> '0'1741R:U: adjacent_5p upward } 0 5 {'0'1741R:U -> '0'1740R:U: adjacent_3p downward } 0 6 {'0'1740R:U -> '0'2039R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2039R:A -> '0'1740R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1741R:U -> '0'1742R:A: adjacent_5p } 0 9 {'0'1742R:A -> '0'1741R:U: adjacent_3p } 0 10 {'0'1741R:U -> '0'2038R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2038R:A -> '0'1741R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1742R:A -> '0'2037R:C: pairing parallel trans XXVI Ww/Ww } 0 13 {'0'2037R:C -> '0'1742R:A: pairing parallel trans XXVI Ww/Ww } 0 14 {'0'2037R:C -> '0'2038R:A: adjacent_5p } 0 15 {'0'2038R:A -> '0'2037R:C: adjacent_3p } 0 16 {'0'2038R:A -> '0'2039R:A: adjacent_5p upward } 0 17 {'0'2039R:A -> '0'2038R:A: adjacent_3p downward } 0 18 {'0'2039R:A -> '0'2040R:C: adjacent_5p upward } 0 19 {'0'2040R:C -> '0'2039R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1740R:U 0 1 '0'1741R:U 0 2 '0'1742R:A 0 3 '0'1743R:G 0 4 '0'2036R:C 0 5 '0'2037R:C 0 6 '0'2038R:A 0 7 '0'2039R:A 0 [Edges] 0 {'0'1740R:U -> '0'1741R:U: adjacent_5p upward } 0 1 {'0'1741R:U -> '0'1740R:U: adjacent_3p downward } 0 2 {'0'1740R:U -> '0'2039R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2039R:A -> '0'1740R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1741R:U -> '0'1742R:A: adjacent_5p } 0 5 {'0'1742R:A -> '0'1741R:U: adjacent_3p } 0 6 {'0'1741R:U -> '0'2038R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2038R:A -> '0'1741R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1742R:A -> '0'1743R:G: adjacent_5p upward } 0 9 {'0'1743R:G -> '0'1742R:A: adjacent_3p downward } 0 10 {'0'1742R:A -> '0'2037R:C: pairing parallel trans XXVI Ww/Ww } 0 11 {'0'2037R:C -> '0'1742R:A: pairing parallel trans XXVI Ww/Ww } 0 12 {'0'1743R:G -> '0'2036R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2036R:C -> '0'1743R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2036R:C -> '0'2037R:C: adjacent_5p inward } 0 15 {'0'2037R:C -> '0'2036R:C: adjacent_3p inward } 0 16 {'0'2037R:C -> '0'2038R:A: adjacent_5p } 0 17 {'0'2038R:A -> '0'2037R:C: adjacent_3p } 0 18 {'0'2038R:A -> '0'2039R:A: adjacent_5p upward } 0 19 {'0'2039R:A -> '0'2038R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1741R:U 0 1 '0'1742R:A 0 2 '0'1743R:G 0 3 '0'1744R:G 0 4 '0'2035R:C 0 5 '0'2036R:C 0 6 '0'2037R:C 0 7 '0'2038R:A 0 [Edges] 0 {'0'1741R:U -> '0'1742R:A: adjacent_5p } 0 1 {'0'1742R:A -> '0'1741R:U: adjacent_3p } 0 2 {'0'1741R:U -> '0'2038R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2038R:A -> '0'1741R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1742R:A -> '0'1743R:G: adjacent_5p upward } 0 5 {'0'1743R:G -> '0'1742R:A: adjacent_3p downward } 0 6 {'0'1742R:A -> '0'2037R:C: pairing parallel trans XXVI Ww/Ww } 0 7 {'0'2037R:C -> '0'1742R:A: pairing parallel trans XXVI Ww/Ww } 0 8 {'0'1743R:G -> '0'1744R:G: adjacent_5p upward } 0 9 {'0'1744R:G -> '0'1743R:G: adjacent_3p downward } 0 10 {'0'1743R:G -> '0'2036R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2036R:C -> '0'1743R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1744R:G -> '0'2035R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2035R:C -> '0'1744R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2035R:C -> '0'2036R:C: adjacent_5p } 0 15 {'0'2036R:C -> '0'2035R:C: adjacent_3p } 0 16 {'0'2036R:C -> '0'2037R:C: adjacent_5p inward } 0 17 {'0'2037R:C -> '0'2036R:C: adjacent_3p inward } 0 18 {'0'2037R:C -> '0'2038R:A: adjacent_5p } 0 19 {'0'2038R:A -> '0'2037R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1742R:A 0 1 '0'1743R:G 0 2 '0'1744R:G 0 3 '0'1745R:G 0 4 '0'2034R:U 0 5 '0'2035R:C 0 6 '0'2036R:C 0 7 '0'2037R:C 0 [Edges] 0 {'0'1742R:A -> '0'1743R:G: adjacent_5p upward } 0 1 {'0'1743R:G -> '0'1742R:A: adjacent_3p downward } 0 2 {'0'1742R:A -> '0'2037R:C: pairing parallel trans XXVI Ww/Ww } 0 3 {'0'2037R:C -> '0'1742R:A: pairing parallel trans XXVI Ww/Ww } 0 4 {'0'1743R:G -> '0'1744R:G: adjacent_5p upward } 0 5 {'0'1744R:G -> '0'1743R:G: adjacent_3p downward } 0 6 {'0'1743R:G -> '0'2036R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2036R:C -> '0'1743R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1744R:G -> '0'1745R:G: adjacent_5p } 0 9 {'0'1745R:G -> '0'1744R:G: adjacent_3p } 0 10 {'0'1744R:G -> '0'2035R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2035R:C -> '0'1744R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1745R:G -> '0'2034R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 13 {'0'2034R:U -> '0'1745R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 14 {'0'2034R:U -> '0'2035R:C: adjacent_5p upward } 0 15 {'0'2035R:C -> '0'2034R:U: adjacent_3p downward } 0 16 {'0'2035R:C -> '0'2036R:C: adjacent_5p } 0 17 {'0'2036R:C -> '0'2035R:C: adjacent_3p } 0 18 {'0'2036R:C -> '0'2037R:C: adjacent_5p inward } 0 19 {'0'2037R:C -> '0'2036R:C: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1760R:G 0 1 '0'1761R:U 0 2 '0'1762R:C 0 3 '0'1763R:C 0 4 '0'1781R:G 0 5 '0'1782R:G 0 6 '0'1783R:A 0 7 '0'1784R:U 0 [Edges] 0 {'0'1760R:G -> '0'1761R:U: adjacent_5p upward } 0 1 {'0'1761R:U -> '0'1760R:G: adjacent_3p downward } 0 2 {'0'1760R:G -> '0'1784R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'1784R:U -> '0'1760R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'1761R:U -> '0'1762R:C: adjacent_5p } 0 5 {'0'1762R:C -> '0'1761R:U: adjacent_3p } 0 6 {'0'1761R:U -> '0'1783R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1783R:A -> '0'1761R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1762R:C -> '0'1763R:C: adjacent_5p upward } 0 9 {'0'1763R:C -> '0'1762R:C: adjacent_3p downward } 0 10 {'0'1762R:C -> '0'1782R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1782R:G -> '0'1762R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1763R:C -> '0'1781R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1781R:G -> '0'1763R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1781R:G -> '0'1782R:G: adjacent_5p upward } 0 15 {'0'1782R:G -> '0'1781R:G: adjacent_3p downward } 0 16 {'0'1782R:G -> '0'1783R:A: adjacent_5p upward } 0 17 {'0'1783R:A -> '0'1782R:G: adjacent_3p downward } 0 18 {'0'1783R:A -> '0'1784R:U: adjacent_5p upward } 0 19 {'0'1784R:U -> '0'1783R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1761R:U 0 1 '0'1762R:C 0 2 '0'1763R:C 0 3 '0'1764R:C 0 4 '0'1780R:G 0 5 '0'1781R:G 0 6 '0'1782R:G 0 7 '0'1783R:A 0 [Edges] 0 {'0'1761R:U -> '0'1762R:C: adjacent_5p } 0 1 {'0'1762R:C -> '0'1761R:U: adjacent_3p } 0 2 {'0'1761R:U -> '0'1783R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1783R:A -> '0'1761R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1762R:C -> '0'1763R:C: adjacent_5p upward } 0 5 {'0'1763R:C -> '0'1762R:C: adjacent_3p downward } 0 6 {'0'1762R:C -> '0'1782R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1782R:G -> '0'1762R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1763R:C -> '0'1764R:C: adjacent_5p upward } 0 9 {'0'1764R:C -> '0'1763R:C: adjacent_3p downward } 0 10 {'0'1763R:C -> '0'1781R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1781R:G -> '0'1763R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1764R:C -> '0'1780R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1780R:G -> '0'1764R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1780R:G -> '0'1781R:G: adjacent_5p upward } 0 15 {'0'1781R:G -> '0'1780R:G: adjacent_3p downward } 0 16 {'0'1781R:G -> '0'1782R:G: adjacent_5p upward } 0 17 {'0'1782R:G -> '0'1781R:G: adjacent_3p downward } 0 18 {'0'1782R:G -> '0'1783R:A: adjacent_5p upward } 0 19 {'0'1783R:A -> '0'1782R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1762R:C 0 1 '0'1763R:C 0 2 '0'1764R:C 0 3 '0'1765R:G 0 4 '0'1779R:A 0 5 '0'1780R:G 0 6 '0'1781R:G 0 7 '0'1782R:G 0 [Edges] 0 {'0'1762R:C -> '0'1763R:C: adjacent_5p upward } 0 1 {'0'1763R:C -> '0'1762R:C: adjacent_3p downward } 0 2 {'0'1762R:C -> '0'1782R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1782R:G -> '0'1762R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1763R:C -> '0'1764R:C: adjacent_5p upward } 0 5 {'0'1764R:C -> '0'1763R:C: adjacent_3p downward } 0 6 {'0'1763R:C -> '0'1781R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1781R:G -> '0'1763R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1764R:C -> '0'1765R:G: adjacent_5p upward } 0 9 {'0'1765R:G -> '0'1764R:C: adjacent_3p downward } 0 10 {'0'1764R:C -> '0'1780R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1780R:G -> '0'1764R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1765R:G -> '0'1779R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {'0'1779R:A -> '0'1765R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {'0'1779R:A -> '0'1780R:G: adjacent_5p upward } 0 15 {'0'1780R:G -> '0'1779R:A: adjacent_3p downward } 0 16 {'0'1780R:G -> '0'1781R:G: adjacent_5p upward } 0 17 {'0'1781R:G -> '0'1780R:G: adjacent_3p downward } 0 18 {'0'1781R:G -> '0'1782R:G: adjacent_5p upward } 0 19 {'0'1782R:G -> '0'1781R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1767R:A 0 1 '0'1768R:C 0 2 '0'1769R:C 0 3 '0'1770R:U 0 4 '0'1773R:G 0 5 '0'1774R:G 0 6 '0'1775R:A 0 7 '0'1776R:A 0 [Edges] 0 {'0'1767R:A -> '0'1768R:C: adjacent_5p upward } 0 1 {'0'1768R:C -> '0'1767R:A: adjacent_3p downward } 0 2 {'0'1767R:A -> '0'1776R:A: pairing parallel trans II Hh/Hh } 0 3 {'0'1776R:A -> '0'1767R:A: pairing parallel trans II Hh/Hh } 0 4 {'0'1768R:C -> '0'1769R:C: adjacent_5p upward } 0 5 {'0'1769R:C -> '0'1768R:C: adjacent_3p downward } 0 6 {'0'1768R:C -> '0'1775R:A: pairing antiparallel trans one_hbond 72 Hw/Ss } 0 7 {'0'1775R:A -> '0'1768R:C: pairing antiparallel trans one_hbond 72 Ss/Hw } 0 8 {'0'1769R:C -> '0'1770R:U: adjacent_5p upward } 0 9 {'0'1770R:U -> '0'1769R:C: adjacent_3p downward } 0 10 {'0'1769R:C -> '0'1774R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1774R:G -> '0'1769R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1770R:U -> '0'1773R:G: pairing parallel trans one_hbond Ws/Ww } 0 13 {'0'1773R:G -> '0'1770R:U: pairing parallel trans one_hbond Ww/Ws } 0 14 {'0'1773R:G -> '0'1774R:G: adjacent_5p outward } 0 15 {'0'1774R:G -> '0'1773R:G: adjacent_3p outward } 0 16 {'0'1774R:G -> '0'1775R:A: adjacent_5p upward } 0 17 {'0'1775R:A -> '0'1774R:G: adjacent_3p downward } 0 18 {'0'1775R:A -> '0'1776R:A: adjacent_5p inward } 0 19 {'0'1776R:A -> '0'1775R:A: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1785R:G 0 1 '0'1786R:C 0 2 '0'1787R:C 0 3 '0'1788R:U 0 4 '0'1804R:A 0 5 '0'1805R:G 0 6 '0'1806R:G 0 7 '0'1807R:U 0 [Edges] 0 {'0'1785R:G -> '0'1786R:C: adjacent_5p upward } 0 1 {'0'1786R:C -> '0'1785R:G: adjacent_3p downward } 0 2 {'0'1785R:G -> '0'1807R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'1807R:U -> '0'1785R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'1786R:C -> '0'1787R:C: adjacent_5p upward } 0 5 {'0'1787R:C -> '0'1786R:C: adjacent_3p downward } 0 6 {'0'1786R:C -> '0'1806R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1806R:G -> '0'1786R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1787R:C -> '0'1788R:U: adjacent_5p upward } 0 9 {'0'1788R:U -> '0'1787R:C: adjacent_3p downward } 0 10 {'0'1787R:C -> '0'1805R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1805R:G -> '0'1787R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1788R:U -> '0'1804R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1804R:A -> '0'1788R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1804R:A -> '0'1805R:G: adjacent_5p upward } 0 15 {'0'1805R:G -> '0'1804R:A: adjacent_3p downward } 0 16 {'0'1805R:G -> '0'1806R:G: adjacent_5p upward } 0 17 {'0'1806R:G -> '0'1805R:G: adjacent_3p downward } 0 18 {'0'1806R:G -> '0'1807R:U: adjacent_5p upward } 0 19 {'0'1807R:U -> '0'1806R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1786R:C 0 1 '0'1787R:C 0 2 '0'1788R:U 0 3 '0'1789R:G 0 4 '0'1803R:C 0 5 '0'1804R:A 0 6 '0'1805R:G 0 7 '0'1806R:G 0 [Edges] 0 {'0'1786R:C -> '0'1787R:C: adjacent_5p upward } 0 1 {'0'1787R:C -> '0'1786R:C: adjacent_3p downward } 0 2 {'0'1786R:C -> '0'1806R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1806R:G -> '0'1786R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1787R:C -> '0'1788R:U: adjacent_5p upward } 0 5 {'0'1788R:U -> '0'1787R:C: adjacent_3p downward } 0 6 {'0'1787R:C -> '0'1805R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1805R:G -> '0'1787R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1788R:U -> '0'1789R:G: adjacent_5p } 0 9 {'0'1789R:G -> '0'1788R:U: adjacent_3p } 0 10 {'0'1788R:U -> '0'1804R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1804R:A -> '0'1788R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1789R:G -> '0'1803R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1803R:C -> '0'1789R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1789R:G -> '0'1804R:A: outward } 0 15 {'0'1804R:A -> '0'1789R:G: outward } 0 16 {'0'1803R:C -> '0'1804R:A: adjacent_5p upward } 0 17 {'0'1804R:A -> '0'1803R:C: adjacent_3p downward } 0 18 {'0'1804R:A -> '0'1805R:G: adjacent_5p upward } 0 19 {'0'1805R:G -> '0'1804R:A: adjacent_3p downward } 0 20 {'0'1805R:G -> '0'1806R:G: adjacent_5p upward } 0 21 {'0'1806R:G -> '0'1805R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1787R:C 0 1 '0'1788R:U 0 2 '0'1789R:G 0 3 '0'1790R:C 0 4 '0'1802R:G 0 5 '0'1803R:C 0 6 '0'1804R:A 0 7 '0'1805R:G 0 [Edges] 0 {'0'1787R:C -> '0'1788R:U: adjacent_5p upward } 0 1 {'0'1788R:U -> '0'1787R:C: adjacent_3p downward } 0 2 {'0'1787R:C -> '0'1805R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1805R:G -> '0'1787R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1788R:U -> '0'1789R:G: adjacent_5p } 0 5 {'0'1789R:G -> '0'1788R:U: adjacent_3p } 0 6 {'0'1788R:U -> '0'1804R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1804R:A -> '0'1788R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1789R:G -> '0'1790R:C: adjacent_5p upward } 0 9 {'0'1790R:C -> '0'1789R:G: adjacent_3p downward } 0 10 {'0'1789R:G -> '0'1803R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1803R:C -> '0'1789R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1789R:G -> '0'1804R:A: outward } 0 13 {'0'1804R:A -> '0'1789R:G: outward } 0 14 {'0'1790R:C -> '0'1802R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1802R:G -> '0'1790R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1802R:G -> '0'1803R:C: adjacent_5p upward } 0 17 {'0'1803R:C -> '0'1802R:G: adjacent_3p downward } 0 18 {'0'1803R:C -> '0'1804R:A: adjacent_5p upward } 0 19 {'0'1804R:A -> '0'1803R:C: adjacent_3p downward } 0 20 {'0'1804R:A -> '0'1805R:G: adjacent_5p upward } 0 21 {'0'1805R:G -> '0'1804R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1788R:U 0 1 '0'1789R:G 0 2 '0'1790R:C 0 3 '0'1791R:U 0 4 '0'1801R:A 0 5 '0'1802R:G 0 6 '0'1803R:C 0 7 '0'1804R:A 0 [Edges] 0 {'0'1788R:U -> '0'1789R:G: adjacent_5p } 0 1 {'0'1789R:G -> '0'1788R:U: adjacent_3p } 0 2 {'0'1788R:U -> '0'1804R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1804R:A -> '0'1788R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1789R:G -> '0'1790R:C: adjacent_5p upward } 0 5 {'0'1790R:C -> '0'1789R:G: adjacent_3p downward } 0 6 {'0'1789R:G -> '0'1803R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1803R:C -> '0'1789R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1789R:G -> '0'1804R:A: outward } 0 9 {'0'1804R:A -> '0'1789R:G: outward } 0 10 {'0'1790R:C -> '0'1791R:U: adjacent_5p } 0 11 {'0'1791R:U -> '0'1790R:C: adjacent_3p } 0 12 {'0'1790R:C -> '0'1802R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1802R:G -> '0'1790R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1791R:U -> '0'1801R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1801R:A -> '0'1791R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1801R:A -> '0'1802R:G: adjacent_5p upward } 0 17 {'0'1802R:G -> '0'1801R:A: adjacent_3p downward } 0 18 {'0'1802R:G -> '0'1803R:C: adjacent_5p upward } 0 19 {'0'1803R:C -> '0'1802R:G: adjacent_3p downward } 0 20 {'0'1803R:C -> '0'1804R:A: adjacent_5p upward } 0 21 {'0'1804R:A -> '0'1803R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1789R:G 0 1 '0'1790R:C 0 2 '0'1791R:U 0 3 '0'1792R:C 0 4 '0'1800R:G 0 5 '0'1801R:A 0 6 '0'1802R:G 0 7 '0'1803R:C 0 [Edges] 0 {'0'1789R:G -> '0'1790R:C: adjacent_5p upward } 0 1 {'0'1790R:C -> '0'1789R:G: adjacent_3p downward } 0 2 {'0'1789R:G -> '0'1803R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1803R:C -> '0'1789R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1790R:C -> '0'1791R:U: adjacent_5p } 0 5 {'0'1791R:U -> '0'1790R:C: adjacent_3p } 0 6 {'0'1790R:C -> '0'1802R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1802R:G -> '0'1790R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1791R:U -> '0'1792R:C: adjacent_5p } 0 9 {'0'1792R:C -> '0'1791R:U: adjacent_3p } 0 10 {'0'1791R:U -> '0'1801R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1801R:A -> '0'1791R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1792R:C -> '0'1800R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1800R:G -> '0'1792R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1800R:G -> '0'1801R:A: adjacent_5p upward } 0 15 {'0'1801R:A -> '0'1800R:G: adjacent_3p downward } 0 16 {'0'1801R:A -> '0'1802R:G: adjacent_5p upward } 0 17 {'0'1802R:G -> '0'1801R:A: adjacent_3p downward } 0 18 {'0'1802R:G -> '0'1803R:C: adjacent_5p upward } 0 19 {'0'1803R:C -> '0'1802R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1790R:C 0 1 '0'1791R:U 0 2 '0'1792R:C 0 3 '0'1793R:C 0 4 '0'1799R:G 0 5 '0'1800R:G 0 6 '0'1801R:A 0 7 '0'1802R:G 0 [Edges] 0 {'0'1790R:C -> '0'1791R:U: adjacent_5p } 0 1 {'0'1791R:U -> '0'1790R:C: adjacent_3p } 0 2 {'0'1790R:C -> '0'1802R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1802R:G -> '0'1790R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1791R:U -> '0'1792R:C: adjacent_5p } 0 5 {'0'1792R:C -> '0'1791R:U: adjacent_3p } 0 6 {'0'1791R:U -> '0'1801R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1801R:A -> '0'1791R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1792R:C -> '0'1793R:C: adjacent_5p upward } 0 9 {'0'1793R:C -> '0'1792R:C: adjacent_3p downward } 0 10 {'0'1792R:C -> '0'1800R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1800R:G -> '0'1792R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1793R:C -> '0'1799R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1799R:G -> '0'1793R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1799R:G -> '0'1800R:G: adjacent_5p upward } 0 15 {'0'1800R:G -> '0'1799R:G: adjacent_3p downward } 0 16 {'0'1800R:G -> '0'1801R:A: adjacent_5p upward } 0 17 {'0'1801R:A -> '0'1800R:G: adjacent_3p downward } 0 18 {'0'1801R:A -> '0'1802R:G: adjacent_5p upward } 0 19 {'0'1802R:G -> '0'1801R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1820R:G 0 1 '0'1821R:A 0 2 '0'1822R:A 0 3 '0'1823R:G 0 4 '0'2026R:C 0 5 '0'2027R:U 0 6 '0'2028R:U 0 7 '0'2029R:C 0 [Edges] 0 {'0'1820R:G -> '0'1821R:A: adjacent_5p upward } 0 1 {'0'1821R:A -> '0'1820R:G: adjacent_3p downward } 0 2 {'0'1820R:G -> '0'2029R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2029R:C -> '0'1820R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1821R:A -> '0'1822R:A: adjacent_5p upward } 0 5 {'0'1822R:A -> '0'1821R:A: adjacent_3p downward } 0 6 {'0'1821R:A -> '0'2028R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2028R:U -> '0'1821R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1822R:A -> '0'1823R:G: adjacent_5p upward } 0 9 {'0'1823R:G -> '0'1822R:A: adjacent_3p downward } 0 10 {'0'1822R:A -> '0'2027R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2027R:U -> '0'1822R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1823R:G -> '0'2026R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2026R:C -> '0'1823R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2026R:C -> '0'2027R:U: adjacent_5p } 0 15 {'0'2027R:U -> '0'2026R:C: adjacent_3p } 0 16 {'0'2027R:U -> '0'2028R:U: adjacent_5p } 0 17 {'0'2028R:U -> '0'2027R:U: adjacent_3p } 0 18 {'0'2028R:U -> '0'2029R:C: adjacent_5p upward } 0 19 {'0'2029R:C -> '0'2028R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1821R:A 0 1 '0'1822R:A 0 2 '0'1823R:G 0 3 '0'1824R:C 0 4 '0'2025R:G 0 5 '0'2026R:C 0 6 '0'2027R:U 0 7 '0'2028R:U 0 [Edges] 0 {'0'1821R:A -> '0'1822R:A: adjacent_5p upward } 0 1 {'0'1822R:A -> '0'1821R:A: adjacent_3p downward } 0 2 {'0'1821R:A -> '0'2028R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2028R:U -> '0'1821R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1822R:A -> '0'1823R:G: adjacent_5p upward } 0 5 {'0'1823R:G -> '0'1822R:A: adjacent_3p downward } 0 6 {'0'1822R:A -> '0'2027R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2027R:U -> '0'1822R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1823R:G -> '0'1824R:C: adjacent_5p upward } 0 9 {'0'1824R:C -> '0'1823R:G: adjacent_3p downward } 0 10 {'0'1823R:G -> '0'2026R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2026R:C -> '0'1823R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1824R:C -> '0'2025R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2025R:G -> '0'1824R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2025R:G -> '0'2026R:C: adjacent_5p upward } 0 15 {'0'2026R:C -> '0'2025R:G: adjacent_3p downward } 0 16 {'0'2026R:C -> '0'2027R:U: adjacent_5p } 0 17 {'0'2027R:U -> '0'2026R:C: adjacent_3p } 0 18 {'0'2027R:U -> '0'2028R:U: adjacent_5p } 0 19 {'0'2028R:U -> '0'2027R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1822R:A 0 1 '0'1823R:G 0 2 '0'1824R:C 0 3 '0'1825R:U 0 4 '0'2024R:A 0 5 '0'2025R:G 0 6 '0'2026R:C 0 7 '0'2027R:U 0 [Edges] 0 {'0'1822R:A -> '0'1823R:G: adjacent_5p upward } 0 1 {'0'1823R:G -> '0'1822R:A: adjacent_3p downward } 0 2 {'0'1822R:A -> '0'2027R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2027R:U -> '0'1822R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1823R:G -> '0'1824R:C: adjacent_5p upward } 0 5 {'0'1824R:C -> '0'1823R:G: adjacent_3p downward } 0 6 {'0'1823R:G -> '0'2026R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2026R:C -> '0'1823R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1824R:C -> '0'1825R:U: adjacent_5p upward } 0 9 {'0'1825R:U -> '0'1824R:C: adjacent_3p downward } 0 10 {'0'1824R:C -> '0'2025R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2025R:G -> '0'1824R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1825R:U -> '0'2024R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2024R:A -> '0'1825R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2024R:A -> '0'2025R:G: adjacent_5p upward } 0 15 {'0'2025R:G -> '0'2024R:A: adjacent_3p downward } 0 16 {'0'2025R:G -> '0'2026R:C: adjacent_5p upward } 0 17 {'0'2026R:C -> '0'2025R:G: adjacent_3p downward } 0 18 {'0'2026R:C -> '0'2027R:U: adjacent_5p } 0 19 {'0'2027R:U -> '0'2026R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1823R:G 0 1 '0'1824R:C 0 2 '0'1825R:U 0 3 '0'1826R:C 0 4 '0'2023R:G 0 5 '0'2024R:A 0 6 '0'2025R:G 0 7 '0'2026R:C 0 [Edges] 0 {'0'1823R:G -> '0'1824R:C: adjacent_5p upward } 0 1 {'0'1824R:C -> '0'1823R:G: adjacent_3p downward } 0 2 {'0'1823R:G -> '0'2026R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2026R:C -> '0'1823R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1824R:C -> '0'1825R:U: adjacent_5p upward } 0 5 {'0'1825R:U -> '0'1824R:C: adjacent_3p downward } 0 6 {'0'1824R:C -> '0'2025R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2025R:G -> '0'1824R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1825R:U -> '0'1826R:C: adjacent_5p upward } 0 9 {'0'1826R:C -> '0'1825R:U: adjacent_3p downward } 0 10 {'0'1825R:U -> '0'2024R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2024R:A -> '0'1825R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1826R:C -> '0'2023R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2023R:G -> '0'1826R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2023R:G -> '0'2024R:A: adjacent_5p upward } 0 15 {'0'2024R:A -> '0'2023R:G: adjacent_3p downward } 0 16 {'0'2024R:A -> '0'2025R:G: adjacent_5p upward } 0 17 {'0'2025R:G -> '0'2024R:A: adjacent_3p downward } 0 18 {'0'2025R:G -> '0'2026R:C: adjacent_5p upward } 0 19 {'0'2026R:C -> '0'2025R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1829R:A 0 1 '0'1830R:C 0 2 '0'1831R:U 0 3 '0'1832R:G 0 4 '0'1844R:C 0 5 '0'1845R:A 0 6 '0'1846R:U 0 7 '0'1847R:A 0 [Edges] 0 {'0'1829R:A -> '0'1830R:C: adjacent_5p upward } 0 1 {'0'1830R:C -> '0'1829R:A: adjacent_3p downward } 0 2 {'0'1829R:A -> '0'1847R:A: pairing antiparallel trans one_hbond Hh/Bs } 0 3 {'0'1847R:A -> '0'1829R:A: pairing antiparallel trans one_hbond Bs/Hh } 0 4 {'0'1830R:C -> '0'1831R:U: adjacent_5p } 0 5 {'0'1831R:U -> '0'1830R:C: adjacent_3p } 0 6 {'0'1830R:C -> '0'1846R:U: pairing antiparallel trans one_hbond 97 Hh/Bs } 0 7 {'0'1846R:U -> '0'1830R:C: pairing antiparallel trans one_hbond 97 Bs/Hh } 0 8 {'0'1831R:U -> '0'1832R:G: adjacent_5p upward } 0 9 {'0'1832R:G -> '0'1831R:U: adjacent_3p downward } 0 10 {'0'1832R:G -> '0'1844R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1844R:C -> '0'1832R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1832R:G -> '0'1845R:A: outward } 0 13 {'0'1845R:A -> '0'1832R:G: outward } 0 14 {'0'1844R:C -> '0'1845R:A: adjacent_5p upward } 0 15 {'0'1845R:A -> '0'1844R:C: adjacent_3p downward } 0 16 {'0'1845R:A -> '0'1846R:U: adjacent_5p upward } 0 17 {'0'1846R:U -> '0'1845R:A: adjacent_3p downward } 0 18 {'0'1846R:U -> '0'1847R:A: adjacent_5p } 0 19 {'0'1847R:A -> '0'1846R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 12 . . 4 . . . 11 . 14 . . 5 . . . 13 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1830R:C 0 1 '0'1831R:U 0 2 '0'1832R:G 0 3 '0'1833R:U 0 4 '0'1843R:A 0 5 '0'1844R:C 0 6 '0'1845R:A 0 7 '0'1846R:U 0 [Edges] 0 {'0'1830R:C -> '0'1831R:U: adjacent_5p } 0 1 {'0'1831R:U -> '0'1830R:C: adjacent_3p } 0 2 {'0'1830R:C -> '0'1846R:U: pairing antiparallel trans one_hbond 97 Hh/Bs } 0 3 {'0'1846R:U -> '0'1830R:C: pairing antiparallel trans one_hbond 97 Bs/Hh } 0 4 {'0'1831R:U -> '0'1832R:G: adjacent_5p upward } 0 5 {'0'1832R:G -> '0'1831R:U: adjacent_3p downward } 0 6 {'0'1832R:G -> '0'1833R:U: adjacent_5p upward } 0 7 {'0'1833R:U -> '0'1832R:G: adjacent_3p downward } 0 8 {'0'1832R:G -> '0'1844R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'1844R:C -> '0'1832R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'1832R:G -> '0'1845R:A: outward } 0 11 {'0'1845R:A -> '0'1832R:G: outward } 0 12 {'0'1833R:U -> '0'1843R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1843R:A -> '0'1833R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1843R:A -> '0'1844R:C: adjacent_5p upward } 0 15 {'0'1844R:C -> '0'1843R:A: adjacent_3p downward } 0 16 {'0'1844R:C -> '0'1845R:A: adjacent_5p upward } 0 17 {'0'1845R:A -> '0'1844R:C: adjacent_3p downward } 0 18 {'0'1845R:A -> '0'1846R:U: adjacent_5p upward } 0 19 {'0'1846R:U -> '0'1845R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 10 . 3 . . 7 . 12 . . . 4 . . . 13 . 14 . . 5 . . 9 . 15 . 16 . 6 . . 11 . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1847R:A 0 1 '0'1848R:G 0 2 '0'1849R:G 0 3 '0'1850R:U 0 4 '0'1881R:A 0 5 '0'1882R:C 0 6 '0'1883R:U 0 7 '0'1884R:G 0 [Edges] 0 {'0'1847R:A -> '0'1848R:G: adjacent_5p } 0 1 {'0'1848R:G -> '0'1847R:A: adjacent_3p } 0 2 {'0'1847R:A -> '0'1884R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'1884R:G -> '0'1847R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'1848R:G -> '0'1849R:G: adjacent_5p upward } 0 5 {'0'1849R:G -> '0'1848R:G: adjacent_3p downward } 0 6 {'0'1848R:G -> '0'1883R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'1883R:U -> '0'1848R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'1849R:G -> '0'1850R:U: adjacent_5p upward } 0 9 {'0'1850R:U -> '0'1849R:G: adjacent_3p downward } 0 10 {'0'1849R:G -> '0'1882R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1882R:C -> '0'1849R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1850R:U -> '0'1881R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1881R:A -> '0'1850R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1881R:A -> '0'1882R:C: adjacent_5p upward } 0 15 {'0'1882R:C -> '0'1881R:A: adjacent_3p downward } 0 16 {'0'1882R:C -> '0'1883R:U: adjacent_5p upward } 0 17 {'0'1883R:U -> '0'1882R:C: adjacent_3p downward } 0 18 {'0'1883R:U -> '0'1884R:G: adjacent_5p upward } 0 19 {'0'1884R:G -> '0'1883R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1848R:G 0 1 '0'1849R:G 0 2 '0'1850R:U 0 3 '0'1851R:G 0 4 '0'1880R:C 0 5 '0'1881R:A 0 6 '0'1882R:C 0 7 '0'1883R:U 0 [Edges] 0 {'0'1848R:G -> '0'1849R:G: adjacent_5p upward } 0 1 {'0'1849R:G -> '0'1848R:G: adjacent_3p downward } 0 2 {'0'1848R:G -> '0'1883R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'1883R:U -> '0'1848R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'1849R:G -> '0'1850R:U: adjacent_5p upward } 0 5 {'0'1850R:U -> '0'1849R:G: adjacent_3p downward } 0 6 {'0'1849R:G -> '0'1882R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1882R:C -> '0'1849R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1850R:U -> '0'1851R:G: adjacent_5p } 0 9 {'0'1851R:G -> '0'1850R:U: adjacent_3p } 0 10 {'0'1850R:U -> '0'1881R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1881R:A -> '0'1850R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1851R:G -> '0'1880R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1880R:C -> '0'1851R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1851R:G -> '0'1881R:A: outward } 0 15 {'0'1881R:A -> '0'1851R:G: outward } 0 16 {'0'1880R:C -> '0'1881R:A: adjacent_5p } 0 17 {'0'1881R:A -> '0'1880R:C: adjacent_3p } 0 18 {'0'1881R:A -> '0'1882R:C: adjacent_5p upward } 0 19 {'0'1882R:C -> '0'1881R:A: adjacent_3p downward } 0 20 {'0'1882R:C -> '0'1883R:U: adjacent_5p upward } 0 21 {'0'1883R:U -> '0'1882R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1849R:G 0 1 '0'1850R:U 0 2 '0'1851R:G 0 3 '0'1852R:A 0 4 '0'1879R:U 0 5 '0'1880R:C 0 6 '0'1881R:A 0 7 '0'1882R:C 0 [Edges] 0 {'0'1849R:G -> '0'1850R:U: adjacent_5p upward } 0 1 {'0'1850R:U -> '0'1849R:G: adjacent_3p downward } 0 2 {'0'1849R:G -> '0'1882R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1882R:C -> '0'1849R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1850R:U -> '0'1851R:G: adjacent_5p } 0 5 {'0'1851R:G -> '0'1850R:U: adjacent_3p } 0 6 {'0'1850R:U -> '0'1881R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1881R:A -> '0'1850R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1851R:G -> '0'1852R:A: adjacent_5p upward } 0 9 {'0'1852R:A -> '0'1851R:G: adjacent_3p downward } 0 10 {'0'1851R:G -> '0'1880R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1880R:C -> '0'1851R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1851R:G -> '0'1881R:A: outward } 0 13 {'0'1881R:A -> '0'1851R:G: outward } 0 14 {'0'1852R:A -> '0'1879R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'1879R:U -> '0'1852R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'1879R:U -> '0'1880R:C: adjacent_5p upward } 0 17 {'0'1880R:C -> '0'1879R:U: adjacent_3p downward } 0 18 {'0'1880R:C -> '0'1881R:A: adjacent_5p } 0 19 {'0'1881R:A -> '0'1880R:C: adjacent_3p } 0 20 {'0'1881R:A -> '0'1882R:C: adjacent_5p upward } 0 21 {'0'1882R:C -> '0'1881R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1850R:U 0 1 '0'1851R:G 0 2 '0'1852R:A 0 3 '0'1853R:C 0 4 '0'1878R:G 0 5 '0'1879R:U 0 6 '0'1880R:C 0 7 '0'1881R:A 0 [Edges] 0 {'0'1850R:U -> '0'1851R:G: adjacent_5p } 0 1 {'0'1851R:G -> '0'1850R:U: adjacent_3p } 0 2 {'0'1850R:U -> '0'1881R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1881R:A -> '0'1850R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1851R:G -> '0'1852R:A: adjacent_5p upward } 0 5 {'0'1852R:A -> '0'1851R:G: adjacent_3p downward } 0 6 {'0'1851R:G -> '0'1880R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1880R:C -> '0'1851R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1851R:G -> '0'1881R:A: outward } 0 9 {'0'1881R:A -> '0'1851R:G: outward } 0 10 {'0'1852R:A -> '0'1853R:C: adjacent_5p upward } 0 11 {'0'1853R:C -> '0'1852R:A: adjacent_3p downward } 0 12 {'0'1852R:A -> '0'1879R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1879R:U -> '0'1852R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1853R:C -> '0'1878R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1878R:G -> '0'1853R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1878R:G -> '0'1879R:U: adjacent_5p upward } 0 17 {'0'1879R:U -> '0'1878R:G: adjacent_3p downward } 0 18 {'0'1879R:U -> '0'1880R:C: adjacent_5p upward } 0 19 {'0'1880R:C -> '0'1879R:U: adjacent_3p downward } 0 20 {'0'1880R:C -> '0'1881R:A: adjacent_5p } 0 21 {'0'1881R:A -> '0'1880R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1851R:G 0 1 '0'1852R:A 0 2 '0'1853R:C 0 3 '0'1854R:C 0 4 '0'1877R:G 0 5 '0'1878R:G 0 6 '0'1879R:U 0 7 '0'1880R:C 0 [Edges] 0 {'0'1851R:G -> '0'1852R:A: adjacent_5p upward } 0 1 {'0'1852R:A -> '0'1851R:G: adjacent_3p downward } 0 2 {'0'1851R:G -> '0'1880R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1880R:C -> '0'1851R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1852R:A -> '0'1853R:C: adjacent_5p upward } 0 5 {'0'1853R:C -> '0'1852R:A: adjacent_3p downward } 0 6 {'0'1852R:A -> '0'1879R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1879R:U -> '0'1852R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1853R:C -> '0'1854R:C: adjacent_5p upward } 0 9 {'0'1854R:C -> '0'1853R:C: adjacent_3p downward } 0 10 {'0'1853R:C -> '0'1878R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1878R:G -> '0'1853R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1854R:C -> '0'1877R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1877R:G -> '0'1854R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1877R:G -> '0'1878R:G: adjacent_5p upward } 0 15 {'0'1878R:G -> '0'1877R:G: adjacent_3p downward } 0 16 {'0'1878R:G -> '0'1879R:U: adjacent_5p upward } 0 17 {'0'1879R:U -> '0'1878R:G: adjacent_3p downward } 0 18 {'0'1879R:U -> '0'1880R:C: adjacent_5p upward } 0 19 {'0'1880R:C -> '0'1879R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1853R:C 0 1 '0'1854R:C 0 2 '0'1855R:G 0 3 '0'1856R:C 0 4 '0'1875R:A 0 5 '0'1876R:C 0 6 '0'1877R:G 0 7 '0'1878R:G 0 [Edges] 0 {'0'1853R:C -> '0'1854R:C: adjacent_5p upward } 0 1 {'0'1854R:C -> '0'1853R:C: adjacent_3p downward } 0 2 {'0'1853R:C -> '0'1878R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1878R:G -> '0'1853R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1854R:C -> '0'1855R:G: adjacent_5p } 0 5 {'0'1855R:G -> '0'1854R:C: adjacent_3p } 0 6 {'0'1854R:C -> '0'1875R:A: upward } 0 7 {'0'1875R:A -> '0'1854R:C: downward } 0 8 {'0'1854R:C -> '0'1877R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'1877R:G -> '0'1854R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'1855R:G -> '0'1856R:C: adjacent_5p } 0 11 {'0'1856R:C -> '0'1855R:G: adjacent_3p } 0 12 {'0'1855R:G -> '0'1875R:A: downward } 0 13 {'0'1875R:A -> '0'1855R:G: upward } 0 14 {'0'1856R:C -> '0'1875R:A: pairing parallel trans one_hbond Hw/Hh } 0 15 {'0'1875R:A -> '0'1856R:C: pairing parallel trans one_hbond Hh/Hw } 0 16 {'0'1875R:A -> '0'1876R:C: adjacent_5p } 0 17 {'0'1876R:C -> '0'1875R:A: adjacent_3p } 0 18 {'0'1875R:A -> '0'1877R:G: outward } 0 19 {'0'1877R:G -> '0'1875R:A: outward } 0 20 {'0'1876R:C -> '0'1877R:G: adjacent_5p } 0 21 {'0'1877R:G -> '0'1876R:C: adjacent_3p } 0 22 {'0'1877R:G -> '0'1878R:G: adjacent_5p upward } 0 23 {'0'1878R:G -> '0'1877R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . 8 . 2 . 5 . 10 12 . . . 3 . . 11 . 14 . . . 4 . 7 13 15 . 16 18 . 5 . . . . 17 . 20 . 6 . 9 . . 19 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 '0'1856R:C 0 1 '0'1857R:A 0 2 '0'1858R:A 0 3 '0'1859R:A 0 4 '0'1870R:C 0 5 '0'1871R:U 0 6 '0'1872R:C 0 7 '0'1873R:G 0 [Edges] 0 {'0'1856R:C -> '0'1857R:A: adjacent_5p } 0 1 {'0'1857R:A -> '0'1856R:C: adjacent_3p } 0 2 {'0'1856R:C -> '0'1858R:A: outward } 0 3 {'0'1858R:A -> '0'1856R:C: outward } 0 4 {'0'1856R:C -> '0'1873R:G: pairing parallel trans XXII Ww/Ww } 0 5 {'0'1873R:G -> '0'1856R:C: pairing parallel trans XXII Ww/Ww } 0 6 {'0'1857R:A -> '0'1858R:A: adjacent_5p } 0 7 {'0'1858R:A -> '0'1857R:A: adjacent_3p } 0 8 {'0'1858R:A -> '0'1859R:A: adjacent_5p upward } 0 9 {'0'1859R:A -> '0'1858R:A: adjacent_3p downward } 0 10 {'0'1858R:A -> '0'1871R:U: pairing parallel trans one_hbond 50 Hw/Hw } 0 11 {'0'1871R:U -> '0'1858R:A: pairing parallel trans one_hbond 50 Hw/Hw } 0 12 {'0'1859R:A -> '0'1870R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 13 {'0'1870R:C -> '0'1859R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 14 {'0'1870R:C -> '0'1871R:U: adjacent_5p inward } 0 15 {'0'1871R:U -> '0'1870R:C: adjacent_3p inward } 0 16 {'0'1871R:U -> '0'1872R:C: adjacent_5p } 0 17 {'0'1872R:C -> '0'1871R:U: adjacent_3p } 0 18 {'0'1871R:U -> '0'1873R:G: outward } 0 19 {'0'1873R:G -> '0'1871R:U: outward } 0 20 {'0'1872R:C -> '0'1873R:G: adjacent_5p } 0 21 {'0'1873R:G -> '0'1872R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 2 . . . . 4 1 1 . 6 . . . . . 2 3 7 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 18 6 . . . . . 17 . 20 7 5 . . . . 19 21 . [GraphModel] [Vertices] 0 '0'1858R:A 0 1 '0'1859R:A 0 2 '0'1860R:U 0 3 '0'1861R:C 0 4 '0'1868R:G 0 5 '0'1869R:A 0 6 '0'1870R:C 0 7 '0'1871R:U 0 [Edges] 0 {'0'1858R:A -> '0'1859R:A: adjacent_5p upward } 0 1 {'0'1859R:A -> '0'1858R:A: adjacent_3p downward } 0 2 {'0'1858R:A -> '0'1871R:U: pairing parallel trans one_hbond 50 Hw/Hw } 0 3 {'0'1871R:U -> '0'1858R:A: pairing parallel trans one_hbond 50 Hw/Hw } 0 4 {'0'1859R:A -> '0'1860R:U: adjacent_5p upward } 0 5 {'0'1860R:U -> '0'1859R:A: adjacent_3p downward } 0 6 {'0'1859R:A -> '0'1870R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 7 {'0'1870R:C -> '0'1859R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 8 {'0'1860R:U -> '0'1861R:C: adjacent_5p upward } 0 9 {'0'1861R:C -> '0'1860R:U: adjacent_3p downward } 0 10 {'0'1860R:U -> '0'1869R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1869R:A -> '0'1860R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1861R:C -> '0'1868R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1868R:G -> '0'1861R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1868R:G -> '0'1869R:A: adjacent_5p upward } 0 15 {'0'1869R:A -> '0'1868R:G: adjacent_3p downward } 0 16 {'0'1869R:A -> '0'1870R:C: adjacent_5p upward } 0 17 {'0'1870R:C -> '0'1869R:A: adjacent_3p downward } 0 18 {'0'1870R:C -> '0'1871R:U: adjacent_5p inward } 0 19 {'0'1871R:U -> '0'1870R:C: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1859R:A 0 1 '0'1860R:U 0 2 '0'1861R:C 0 3 '0'1862R:C 0 4 '0'1867R:G 0 5 '0'1868R:G 0 6 '0'1869R:A 0 7 '0'1870R:C 0 [Edges] 0 {'0'1859R:A -> '0'1860R:U: adjacent_5p upward } 0 1 {'0'1860R:U -> '0'1859R:A: adjacent_3p downward } 0 2 {'0'1859R:A -> '0'1870R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 3 {'0'1870R:C -> '0'1859R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 4 {'0'1860R:U -> '0'1861R:C: adjacent_5p upward } 0 5 {'0'1861R:C -> '0'1860R:U: adjacent_3p downward } 0 6 {'0'1860R:U -> '0'1869R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1869R:A -> '0'1860R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1861R:C -> '0'1862R:C: adjacent_5p } 0 9 {'0'1862R:C -> '0'1861R:C: adjacent_3p } 0 10 {'0'1861R:C -> '0'1868R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1868R:G -> '0'1861R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1862R:C -> '0'1867R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1867R:G -> '0'1862R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1862R:C -> '0'1868R:G: outward } 0 15 {'0'1868R:G -> '0'1862R:C: outward } 0 16 {'0'1867R:G -> '0'1868R:G: adjacent_5p upward } 0 17 {'0'1868R:G -> '0'1867R:G: adjacent_3p downward } 0 18 {'0'1868R:G -> '0'1869R:A: adjacent_5p upward } 0 19 {'0'1869R:A -> '0'1868R:G: adjacent_3p downward } 0 20 {'0'1869R:A -> '0'1870R:C: adjacent_5p upward } 0 21 {'0'1870R:C -> '0'1869R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1860R:U 0 1 '0'1861R:C 0 2 '0'1862R:C 0 3 '0'1863R:G 0 4 '0'1866R:A 0 5 '0'1867R:G 0 6 '0'1868R:G 0 7 '0'1869R:A 0 [Edges] 0 {'0'1860R:U -> '0'1861R:C: adjacent_5p upward } 0 1 {'0'1861R:C -> '0'1860R:U: adjacent_3p downward } 0 2 {'0'1860R:U -> '0'1869R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1869R:A -> '0'1860R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1861R:C -> '0'1862R:C: adjacent_5p } 0 5 {'0'1862R:C -> '0'1861R:C: adjacent_3p } 0 6 {'0'1861R:C -> '0'1868R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1868R:G -> '0'1861R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1862R:C -> '0'1863R:G: adjacent_5p } 0 9 {'0'1863R:G -> '0'1862R:C: adjacent_3p } 0 10 {'0'1862R:C -> '0'1867R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1867R:G -> '0'1862R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1862R:C -> '0'1868R:G: outward } 0 13 {'0'1868R:G -> '0'1862R:C: outward } 0 14 {'0'1863R:G -> '0'1866R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 15 {'0'1866R:A -> '0'1863R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 16 {'0'1863R:G -> '0'1867R:G: outward } 0 17 {'0'1867R:G -> '0'1863R:G: outward } 0 18 {'0'1866R:A -> '0'1867R:G: adjacent_5p } 0 19 {'0'1867R:G -> '0'1866R:A: adjacent_3p } 0 20 {'0'1867R:G -> '0'1868R:G: adjacent_5p upward } 0 21 {'0'1868R:G -> '0'1867R:G: adjacent_3p downward } 0 22 {'0'1868R:G -> '0'1869R:A: adjacent_5p upward } 0 23 {'0'1869R:A -> '0'1868R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 '0'1885R:A 0 1 '0'1886R:A 0 2 '0'1887R:U 0 3 '0'1888R:C 0 4 '0'2014R:G 0 5 '0'2015R:A 0 6 '0'2016R:U 0 7 '0'2017R:U 0 [Edges] 0 {'0'1885R:A -> '0'1886R:A: adjacent_5p upward } 0 1 {'0'1886R:A -> '0'1885R:A: adjacent_3p downward } 0 2 {'0'1885R:A -> '0'2017R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 3 {'0'2017R:U -> '0'1885R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 4 {'0'1886R:A -> '0'1887R:U: adjacent_5p upward } 0 5 {'0'1887R:U -> '0'1886R:A: adjacent_3p downward } 0 6 {'0'1886R:A -> '0'2016R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 7 {'0'2016R:U -> '0'1886R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 8 {'0'1887R:U -> '0'1888R:C: adjacent_5p upward } 0 9 {'0'1888R:C -> '0'1887R:U: adjacent_3p downward } 0 10 {'0'1887R:U -> '0'2015R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2015R:A -> '0'1887R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1888R:C -> '0'2014R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2014R:G -> '0'1888R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2014R:G -> '0'2015R:A: adjacent_5p upward } 0 15 {'0'2015R:A -> '0'2014R:G: adjacent_3p downward } 0 16 {'0'2015R:A -> '0'2016R:U: adjacent_5p upward } 0 17 {'0'2016R:U -> '0'2015R:A: adjacent_3p downward } 0 18 {'0'2016R:U -> '0'2017R:U: adjacent_5p upward } 0 19 {'0'2017R:U -> '0'2016R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1886R:A 0 1 '0'1887R:U 0 2 '0'1888R:C 0 3 '0'1889R:C 0 4 '0'2013R:G 0 5 '0'2014R:G 0 6 '0'2015R:A 0 7 '0'2016R:U 0 [Edges] 0 {'0'1886R:A -> '0'1887R:U: adjacent_5p upward } 0 1 {'0'1887R:U -> '0'1886R:A: adjacent_3p downward } 0 2 {'0'1886R:A -> '0'2016R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 3 {'0'2016R:U -> '0'1886R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 4 {'0'1887R:U -> '0'1888R:C: adjacent_5p upward } 0 5 {'0'1888R:C -> '0'1887R:U: adjacent_3p downward } 0 6 {'0'1887R:U -> '0'2015R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2015R:A -> '0'1887R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1888R:C -> '0'1889R:C: adjacent_5p upward } 0 9 {'0'1889R:C -> '0'1888R:C: adjacent_3p downward } 0 10 {'0'1888R:C -> '0'2014R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2014R:G -> '0'1888R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1889R:C -> '0'2013R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2013R:G -> '0'1889R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2013R:G -> '0'2014R:G: adjacent_5p } 0 15 {'0'2014R:G -> '0'2013R:G: adjacent_3p } 0 16 {'0'2014R:G -> '0'2015R:A: adjacent_5p upward } 0 17 {'0'2015R:A -> '0'2014R:G: adjacent_3p downward } 0 18 {'0'2015R:A -> '0'2016R:U: adjacent_5p upward } 0 19 {'0'2016R:U -> '0'2015R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1898R:G 0 1 '0'1899R:C 0 2 '0'1900R:A 0 3 '0'1901R:G 0 4 '0'1936R:C 0 5 '0'1937R:U 0 6 '0'1938R:G 0 7 '0'1939R:U 0 [Edges] 0 {'0'1898R:G -> '0'1899R:C: adjacent_5p upward } 0 1 {'0'1899R:C -> '0'1898R:G: adjacent_3p downward } 0 2 {'0'1898R:G -> '0'1939R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'1939R:U -> '0'1898R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'1899R:C -> '0'1900R:A: adjacent_5p upward } 0 5 {'0'1900R:A -> '0'1899R:C: adjacent_3p downward } 0 6 {'0'1899R:C -> '0'1938R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1938R:G -> '0'1899R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1900R:A -> '0'1901R:G: adjacent_5p upward } 0 9 {'0'1901R:G -> '0'1900R:A: adjacent_3p downward } 0 10 {'0'1900R:A -> '0'1937R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1937R:U -> '0'1900R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1900R:A -> '0'1938R:G: outward } 0 13 {'0'1938R:G -> '0'1900R:A: outward } 0 14 {'0'1901R:G -> '0'1936R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1936R:C -> '0'1901R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1936R:C -> '0'1937R:U: adjacent_5p upward } 0 17 {'0'1937R:U -> '0'1936R:C: adjacent_3p downward } 0 18 {'0'1937R:U -> '0'1938R:G: adjacent_5p } 0 19 {'0'1938R:G -> '0'1937R:U: adjacent_3p } 0 20 {'0'1938R:G -> '0'1939R:U: adjacent_5p upward } 0 21 {'0'1939R:U -> '0'1938R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1899R:C 0 1 '0'1900R:A 0 2 '0'1901R:G 0 3 '0'1902R:G 0 4 '0'1935R:C 0 5 '0'1936R:C 0 6 '0'1937R:U 0 7 '0'1938R:G 0 [Edges] 0 {'0'1899R:C -> '0'1900R:A: adjacent_5p upward } 0 1 {'0'1900R:A -> '0'1899R:C: adjacent_3p downward } 0 2 {'0'1899R:C -> '0'1938R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1938R:G -> '0'1899R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1900R:A -> '0'1901R:G: adjacent_5p upward } 0 5 {'0'1901R:G -> '0'1900R:A: adjacent_3p downward } 0 6 {'0'1900R:A -> '0'1937R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1937R:U -> '0'1900R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1900R:A -> '0'1938R:G: outward } 0 9 {'0'1938R:G -> '0'1900R:A: outward } 0 10 {'0'1901R:G -> '0'1902R:G: adjacent_5p upward } 0 11 {'0'1902R:G -> '0'1901R:G: adjacent_3p downward } 0 12 {'0'1901R:G -> '0'1936R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1936R:C -> '0'1901R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1902R:G -> '0'1935R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1935R:C -> '0'1902R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1935R:C -> '0'1936R:C: adjacent_5p upward } 0 17 {'0'1936R:C -> '0'1935R:C: adjacent_3p downward } 0 18 {'0'1936R:C -> '0'1937R:U: adjacent_5p upward } 0 19 {'0'1937R:U -> '0'1936R:C: adjacent_3p downward } 0 20 {'0'1937R:U -> '0'1938R:G: adjacent_5p } 0 21 {'0'1938R:G -> '0'1937R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1900R:A 0 1 '0'1901R:G 0 2 '0'1902R:G 0 3 '0'1903R:U 0 4 '0'1934R:A 0 5 '0'1935R:C 0 6 '0'1936R:C 0 7 '0'1937R:U 0 [Edges] 0 {'0'1900R:A -> '0'1901R:G: adjacent_5p upward } 0 1 {'0'1901R:G -> '0'1900R:A: adjacent_3p downward } 0 2 {'0'1900R:A -> '0'1937R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1937R:U -> '0'1900R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1901R:G -> '0'1902R:G: adjacent_5p upward } 0 5 {'0'1902R:G -> '0'1901R:G: adjacent_3p downward } 0 6 {'0'1901R:G -> '0'1936R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1936R:C -> '0'1901R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1902R:G -> '0'1903R:U: adjacent_5p upward } 0 9 {'0'1903R:U -> '0'1902R:G: adjacent_3p downward } 0 10 {'0'1902R:G -> '0'1935R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1935R:C -> '0'1902R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1903R:U -> '0'1934R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 13 {'0'1934R:A -> '0'1903R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 14 {'0'1934R:A -> '0'1935R:C: adjacent_5p upward } 0 15 {'0'1935R:C -> '0'1934R:A: adjacent_3p downward } 0 16 {'0'1935R:C -> '0'1936R:C: adjacent_5p upward } 0 17 {'0'1936R:C -> '0'1935R:C: adjacent_3p downward } 0 18 {'0'1936R:C -> '0'1937R:U: adjacent_5p upward } 0 19 {'0'1937R:U -> '0'1936R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1905R:U 0 1 '0'1906R:C 0 2 '0'1907R:U 0 3 '0'1908R:G 0 4 '0'1931R:A 0 5 '0'1932R:G 0 6 '0'1933R:G 0 7 '0'1934R:A 0 [Edges] 0 {'0'1905R:U -> '0'1906R:C: adjacent_5p upward } 0 1 {'0'1906R:C -> '0'1905R:U: adjacent_3p downward } 0 2 {'0'1905R:U -> '0'1934R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1934R:A -> '0'1905R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1906R:C -> '0'1907R:U: adjacent_5p upward } 0 5 {'0'1907R:U -> '0'1906R:C: adjacent_3p downward } 0 6 {'0'1906R:C -> '0'1933R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1933R:G -> '0'1906R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1906R:C -> '0'1934R:A: outward } 0 9 {'0'1934R:A -> '0'1906R:C: outward } 0 10 {'0'1907R:U -> '0'1908R:G: adjacent_5p upward } 0 11 {'0'1908R:G -> '0'1907R:U: adjacent_3p downward } 0 12 {'0'1907R:U -> '0'1932R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {'0'1932R:G -> '0'1907R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {'0'1908R:G -> '0'1931R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {'0'1931R:A -> '0'1908R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {'0'1931R:A -> '0'1932R:G: adjacent_5p upward } 0 17 {'0'1932R:G -> '0'1931R:A: adjacent_3p downward } 0 18 {'0'1932R:G -> '0'1933R:G: adjacent_5p upward } 0 19 {'0'1933R:G -> '0'1932R:G: adjacent_3p downward } 0 20 {'0'1933R:G -> '0'1934R:A: adjacent_5p upward } 0 21 {'0'1934R:A -> '0'1933R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'1912R:A 0 1 '0'1913R:C 0 2 '0'1914R:C 0 3 '0'1915R:U 0 4 '0'1924R:A 0 5 '0'1925R:G 0 6 '0'1926R:G 0 7 '0'1927R:A 0 [Edges] 0 {'0'1912R:A -> '0'1913R:C: adjacent_5p upward } 0 1 {'0'1913R:C -> '0'1912R:A: adjacent_3p downward } 0 2 {'0'1912R:A -> '0'1927R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 3 {'0'1927R:A -> '0'1912R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 4 {'0'1913R:C -> '0'1914R:C: adjacent_5p upward } 0 5 {'0'1914R:C -> '0'1913R:C: adjacent_3p downward } 0 6 {'0'1913R:C -> '0'1926R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1926R:G -> '0'1913R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1914R:C -> '0'1915R:U: adjacent_5p upward } 0 9 {'0'1915R:U -> '0'1914R:C: adjacent_3p downward } 0 10 {'0'1914R:C -> '0'1925R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1925R:G -> '0'1914R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1915R:U -> '0'1924R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'1924R:A -> '0'1915R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'1924R:A -> '0'1925R:G: adjacent_5p upward } 0 15 {'0'1925R:G -> '0'1924R:A: adjacent_3p downward } 0 16 {'0'1925R:G -> '0'1926R:G: adjacent_5p upward } 0 17 {'0'1926R:G -> '0'1925R:G: adjacent_3p downward } 0 18 {'0'1926R:G -> '0'1927R:A: adjacent_5p upward } 0 19 {'0'1927R:A -> '0'1926R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1913R:C 0 1 '0'1914R:C 0 2 '0'1915R:U 0 3 '0'1916R:C 0 4 '0'1923R:G 0 5 '0'1924R:A 0 6 '0'1925R:G 0 7 '0'1926R:G 0 [Edges] 0 {'0'1913R:C -> '0'1914R:C: adjacent_5p upward } 0 1 {'0'1914R:C -> '0'1913R:C: adjacent_3p downward } 0 2 {'0'1913R:C -> '0'1926R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1926R:G -> '0'1913R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1914R:C -> '0'1915R:U: adjacent_5p upward } 0 5 {'0'1915R:U -> '0'1914R:C: adjacent_3p downward } 0 6 {'0'1914R:C -> '0'1925R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1925R:G -> '0'1914R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1915R:U -> '0'1916R:C: adjacent_5p upward } 0 9 {'0'1916R:C -> '0'1915R:U: adjacent_3p downward } 0 10 {'0'1915R:U -> '0'1924R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1924R:A -> '0'1915R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1916R:C -> '0'1923R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1923R:G -> '0'1916R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1923R:G -> '0'1924R:A: adjacent_5p upward } 0 15 {'0'1924R:A -> '0'1923R:G: adjacent_3p downward } 0 16 {'0'1924R:A -> '0'1925R:G: adjacent_5p upward } 0 17 {'0'1925R:G -> '0'1924R:A: adjacent_3p downward } 0 18 {'0'1925R:G -> '0'1926R:G: adjacent_5p upward } 0 19 {'0'1926R:G -> '0'1925R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1914R:C 0 1 '0'1915R:U 0 2 '0'1916R:C 0 3 '0'1917R:G 0 4 '0'1922R:A 0 5 '0'1923R:G 0 6 '0'1924R:A 0 7 '0'1925R:G 0 [Edges] 0 {'0'1914R:C -> '0'1915R:U: adjacent_5p upward } 0 1 {'0'1915R:U -> '0'1914R:C: adjacent_3p downward } 0 2 {'0'1914R:C -> '0'1925R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1925R:G -> '0'1914R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1915R:U -> '0'1916R:C: adjacent_5p upward } 0 5 {'0'1916R:C -> '0'1915R:U: adjacent_3p downward } 0 6 {'0'1915R:U -> '0'1924R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1924R:A -> '0'1915R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'1916R:C -> '0'1917R:G: adjacent_5p upward } 0 9 {'0'1917R:G -> '0'1916R:C: adjacent_3p downward } 0 10 {'0'1916R:C -> '0'1923R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1923R:G -> '0'1916R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1917R:G -> '0'1922R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {'0'1922R:A -> '0'1917R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {'0'1922R:A -> '0'1923R:G: adjacent_5p } 0 15 {'0'1923R:G -> '0'1922R:A: adjacent_3p } 0 16 {'0'1923R:G -> '0'1924R:A: adjacent_5p upward } 0 17 {'0'1924R:A -> '0'1923R:G: adjacent_3p downward } 0 18 {'0'1924R:A -> '0'1925R:G: adjacent_5p upward } 0 19 {'0'1925R:G -> '0'1924R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'1986R:G 0 1 '0'1987R:C 0 2 '0'1988R:C 0 3 '0'1989R:G 0 4 '0'1999R:C 0 5 '0'2000R:G 0 6 '0'2001R:G 0 7 '0'2002R:C 0 [Edges] 0 {'0'1986R:G -> '0'1987R:C: adjacent_5p upward } 0 1 {'0'1987R:C -> '0'1986R:G: adjacent_3p downward } 0 2 {'0'1986R:G -> '0'2002R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2002R:C -> '0'1986R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1987R:C -> '0'1988R:C: adjacent_5p upward } 0 5 {'0'1988R:C -> '0'1987R:C: adjacent_3p downward } 0 6 {'0'1987R:C -> '0'2001R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2001R:G -> '0'1987R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1988R:C -> '0'1989R:G: adjacent_5p upward } 0 9 {'0'1989R:G -> '0'1988R:C: adjacent_3p downward } 0 10 {'0'1988R:C -> '0'2000R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2000R:G -> '0'1988R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1989R:G -> '0'1999R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'1999R:C -> '0'1989R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'1989R:G -> '0'2000R:G: outward } 0 15 {'0'2000R:G -> '0'1989R:G: outward } 0 16 {'0'1999R:C -> '0'2000R:G: adjacent_5p upward } 0 17 {'0'2000R:G -> '0'1999R:C: adjacent_3p downward } 0 18 {'0'2000R:G -> '0'2001R:G: adjacent_5p upward } 0 19 {'0'2001R:G -> '0'2000R:G: adjacent_3p downward } 0 20 {'0'2001R:G -> '0'2002R:C: adjacent_5p upward } 0 21 {'0'2002R:C -> '0'2001R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'1987R:C 0 1 '0'1988R:C 0 2 '0'1989R:G 0 3 '0'1990R:C 0 4 '0'1998R:G 0 5 '0'1999R:C 0 6 '0'2000R:G 0 7 '0'2001R:G 0 [Edges] 0 {'0'1987R:C -> '0'1988R:C: adjacent_5p upward } 0 1 {'0'1988R:C -> '0'1987R:C: adjacent_3p downward } 0 2 {'0'1987R:C -> '0'2001R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2001R:G -> '0'1987R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1988R:C -> '0'1989R:G: adjacent_5p upward } 0 5 {'0'1989R:G -> '0'1988R:C: adjacent_3p downward } 0 6 {'0'1988R:C -> '0'2000R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2000R:G -> '0'1988R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1989R:G -> '0'1990R:C: adjacent_5p upward } 0 9 {'0'1990R:C -> '0'1989R:G: adjacent_3p downward } 0 10 {'0'1989R:G -> '0'1999R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1999R:C -> '0'1989R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1989R:G -> '0'2000R:G: outward } 0 13 {'0'2000R:G -> '0'1989R:G: outward } 0 14 {'0'1990R:C -> '0'1998R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1998R:G -> '0'1990R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1998R:G -> '0'1999R:C: adjacent_5p upward } 0 17 {'0'1999R:C -> '0'1998R:G: adjacent_3p downward } 0 18 {'0'1999R:C -> '0'2000R:G: adjacent_5p upward } 0 19 {'0'2000R:G -> '0'1999R:C: adjacent_3p downward } 0 20 {'0'2000R:G -> '0'2001R:G: adjacent_5p upward } 0 21 {'0'2001R:G -> '0'2000R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2064R:U 0 1 '0'2065R:C 0 2 '0'2066R:C 0 3 '0'2067R:A 0 4 '0'2078R:U 0 5 '0'2079R:G 0 6 '0'2080R:G 0 7 '0'2081R:A 0 [Edges] 0 {'0'2064R:U -> '0'2065R:C: adjacent_5p upward } 0 1 {'0'2065R:C -> '0'2064R:U: adjacent_3p downward } 0 2 {'0'2064R:U -> '0'2081R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2081R:A -> '0'2064R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2065R:C -> '0'2066R:C: adjacent_5p } 0 5 {'0'2066R:C -> '0'2065R:C: adjacent_3p } 0 6 {'0'2065R:C -> '0'2080R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2080R:G -> '0'2065R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2066R:C -> '0'2067R:A: adjacent_5p upward } 0 9 {'0'2067R:A -> '0'2066R:C: adjacent_3p downward } 0 10 {'0'2066R:C -> '0'2079R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2079R:G -> '0'2066R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2067R:A -> '0'2078R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2078R:U -> '0'2067R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2067R:A -> '0'2079R:G: outward } 0 15 {'0'2079R:G -> '0'2067R:A: outward } 0 16 {'0'2078R:U -> '0'2079R:G: adjacent_5p } 0 17 {'0'2079R:G -> '0'2078R:U: adjacent_3p } 0 18 {'0'2079R:G -> '0'2080R:G: adjacent_5p upward } 0 19 {'0'2080R:G -> '0'2079R:G: adjacent_3p downward } 0 20 {'0'2080R:G -> '0'2081R:A: adjacent_5p upward } 0 21 {'0'2081R:A -> '0'2080R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2065R:C 0 1 '0'2066R:C 0 2 '0'2067R:A 0 3 '0'2068R:G 0 4 '0'2077R:C 0 5 '0'2078R:U 0 6 '0'2079R:G 0 7 '0'2080R:G 0 [Edges] 0 {'0'2065R:C -> '0'2066R:C: adjacent_5p } 0 1 {'0'2066R:C -> '0'2065R:C: adjacent_3p } 0 2 {'0'2065R:C -> '0'2080R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2080R:G -> '0'2065R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2066R:C -> '0'2067R:A: adjacent_5p upward } 0 5 {'0'2067R:A -> '0'2066R:C: adjacent_3p downward } 0 6 {'0'2066R:C -> '0'2079R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2079R:G -> '0'2066R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2067R:A -> '0'2068R:G: adjacent_5p upward } 0 9 {'0'2068R:G -> '0'2067R:A: adjacent_3p downward } 0 10 {'0'2067R:A -> '0'2078R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2078R:U -> '0'2067R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2067R:A -> '0'2079R:G: outward } 0 13 {'0'2079R:G -> '0'2067R:A: outward } 0 14 {'0'2068R:G -> '0'2077R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2077R:C -> '0'2068R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2077R:C -> '0'2078R:U: adjacent_5p upward } 0 17 {'0'2078R:U -> '0'2077R:C: adjacent_3p downward } 0 18 {'0'2078R:U -> '0'2079R:G: adjacent_5p } 0 19 {'0'2079R:G -> '0'2078R:U: adjacent_3p } 0 20 {'0'2079R:G -> '0'2080R:G: adjacent_5p upward } 0 21 {'0'2080R:G -> '0'2079R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2084R:C 0 1 '0'2085R:A 0 2 '0'2086R:C 0 3 '0'2087R:C 0 4 '0'2657R:G 0 5 '0'2658R:G 0 6 '0'2659R:U 0 7 '0'2660R:G 0 [Edges] 0 {'0'2084R:C -> '0'2085R:A: adjacent_5p } 0 1 {'0'2085R:A -> '0'2084R:C: adjacent_3p } 0 2 {'0'2084R:C -> '0'2660R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2660R:G -> '0'2084R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2085R:A -> '0'2086R:C: adjacent_5p upward } 0 5 {'0'2086R:C -> '0'2085R:A: adjacent_3p downward } 0 6 {'0'2085R:A -> '0'2659R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2659R:U -> '0'2085R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2085R:A -> '0'2660R:G: outward } 0 9 {'0'2660R:G -> '0'2085R:A: outward } 0 10 {'0'2086R:C -> '0'2087R:C: adjacent_5p upward } 0 11 {'0'2087R:C -> '0'2086R:C: adjacent_3p downward } 0 12 {'0'2086R:C -> '0'2658R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2658R:G -> '0'2086R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2087R:C -> '0'2657R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2657R:G -> '0'2087R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2657R:G -> '0'2658R:G: adjacent_5p upward } 0 17 {'0'2658R:G -> '0'2657R:G: adjacent_3p downward } 0 18 {'0'2658R:G -> '0'2659R:U: adjacent_5p upward } 0 19 {'0'2659R:U -> '0'2658R:G: adjacent_3p downward } 0 20 {'0'2659R:U -> '0'2660R:G: adjacent_5p upward } 0 21 {'0'2660R:G -> '0'2659R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2085R:A 0 1 '0'2086R:C 0 2 '0'2087R:C 0 3 '0'2088R:C 0 4 '0'2656R:G 0 5 '0'2657R:G 0 6 '0'2658R:G 0 7 '0'2659R:U 0 [Edges] 0 {'0'2085R:A -> '0'2086R:C: adjacent_5p upward } 0 1 {'0'2086R:C -> '0'2085R:A: adjacent_3p downward } 0 2 {'0'2085R:A -> '0'2659R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2659R:U -> '0'2085R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2086R:C -> '0'2087R:C: adjacent_5p upward } 0 5 {'0'2087R:C -> '0'2086R:C: adjacent_3p downward } 0 6 {'0'2086R:C -> '0'2658R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2658R:G -> '0'2086R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2087R:C -> '0'2088R:C: adjacent_5p } 0 9 {'0'2088R:C -> '0'2087R:C: adjacent_3p } 0 10 {'0'2087R:C -> '0'2657R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2657R:G -> '0'2087R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2088R:C -> '0'2656R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2656R:G -> '0'2088R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2088R:C -> '0'2657R:G: outward } 0 15 {'0'2657R:G -> '0'2088R:C: outward } 0 16 {'0'2656R:G -> '0'2657R:G: adjacent_5p upward } 0 17 {'0'2657R:G -> '0'2656R:G: adjacent_3p downward } 0 18 {'0'2657R:G -> '0'2658R:G: adjacent_5p upward } 0 19 {'0'2658R:G -> '0'2657R:G: adjacent_3p downward } 0 20 {'0'2658R:G -> '0'2659R:U: adjacent_5p upward } 0 21 {'0'2659R:U -> '0'2658R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2086R:C 0 1 '0'2087R:C 0 2 '0'2088R:C 0 3 '0'2089R:A 0 4 '0'2655R:U 0 5 '0'2656R:G 0 6 '0'2657R:G 0 7 '0'2658R:G 0 [Edges] 0 {'0'2086R:C -> '0'2087R:C: adjacent_5p upward } 0 1 {'0'2087R:C -> '0'2086R:C: adjacent_3p downward } 0 2 {'0'2086R:C -> '0'2658R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2658R:G -> '0'2086R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2087R:C -> '0'2088R:C: adjacent_5p } 0 5 {'0'2088R:C -> '0'2087R:C: adjacent_3p } 0 6 {'0'2087R:C -> '0'2657R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2657R:G -> '0'2087R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2088R:C -> '0'2089R:A: adjacent_5p } 0 9 {'0'2089R:A -> '0'2088R:C: adjacent_3p } 0 10 {'0'2088R:C -> '0'2656R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2656R:G -> '0'2088R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2088R:C -> '0'2657R:G: outward } 0 13 {'0'2657R:G -> '0'2088R:C: outward } 0 14 {'0'2089R:A -> '0'2655R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2655R:U -> '0'2089R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2089R:A -> '0'2656R:G: outward } 0 17 {'0'2656R:G -> '0'2089R:A: outward } 0 18 {'0'2655R:U -> '0'2656R:G: adjacent_5p upward } 0 19 {'0'2656R:G -> '0'2655R:U: adjacent_3p downward } 0 20 {'0'2656R:G -> '0'2657R:G: adjacent_5p upward } 0 21 {'0'2657R:G -> '0'2656R:G: adjacent_3p downward } 0 22 {'0'2657R:G -> '0'2658R:G: adjacent_5p upward } 0 23 {'0'2658R:G -> '0'2657R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 '0'2087R:C 0 1 '0'2088R:C 0 2 '0'2089R:A 0 3 '0'2090R:G 0 4 '0'2654R:C 0 5 '0'2655R:U 0 6 '0'2656R:G 0 7 '0'2657R:G 0 [Edges] 0 {'0'2087R:C -> '0'2088R:C: adjacent_5p } 0 1 {'0'2088R:C -> '0'2087R:C: adjacent_3p } 0 2 {'0'2087R:C -> '0'2657R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2657R:G -> '0'2087R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2088R:C -> '0'2089R:A: adjacent_5p } 0 5 {'0'2089R:A -> '0'2088R:C: adjacent_3p } 0 6 {'0'2088R:C -> '0'2656R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2656R:G -> '0'2088R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2088R:C -> '0'2657R:G: outward } 0 9 {'0'2657R:G -> '0'2088R:C: outward } 0 10 {'0'2089R:A -> '0'2090R:G: adjacent_5p upward } 0 11 {'0'2090R:G -> '0'2089R:A: adjacent_3p downward } 0 12 {'0'2089R:A -> '0'2655R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2655R:U -> '0'2089R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2089R:A -> '0'2656R:G: outward } 0 15 {'0'2656R:G -> '0'2089R:A: outward } 0 16 {'0'2090R:G -> '0'2654R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {'0'2654R:C -> '0'2090R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {'0'2654R:C -> '0'2655R:U: adjacent_5p } 0 19 {'0'2655R:U -> '0'2654R:C: adjacent_3p } 0 20 {'0'2655R:U -> '0'2656R:G: adjacent_5p upward } 0 21 {'0'2656R:G -> '0'2655R:U: adjacent_3p downward } 0 22 {'0'2656R:G -> '0'2657R:G: adjacent_5p upward } 0 23 {'0'2657R:G -> '0'2656R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'2088R:C 0 1 '0'2089R:A 0 2 '0'2090R:G 0 3 '0'2091R:G 0 4 '0'2653R:A 0 5 '0'2654R:C 0 6 '0'2655R:U 0 7 '0'2656R:G 0 [Edges] 0 {'0'2088R:C -> '0'2089R:A: adjacent_5p } 0 1 {'0'2089R:A -> '0'2088R:C: adjacent_3p } 0 2 {'0'2088R:C -> '0'2656R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2656R:G -> '0'2088R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2089R:A -> '0'2090R:G: adjacent_5p upward } 0 5 {'0'2090R:G -> '0'2089R:A: adjacent_3p downward } 0 6 {'0'2089R:A -> '0'2655R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2655R:U -> '0'2089R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2089R:A -> '0'2656R:G: outward } 0 9 {'0'2656R:G -> '0'2089R:A: outward } 0 10 {'0'2090R:G -> '0'2091R:G: adjacent_5p upward } 0 11 {'0'2091R:G -> '0'2090R:G: adjacent_3p downward } 0 12 {'0'2090R:G -> '0'2654R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2654R:C -> '0'2090R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2091R:G -> '0'2653R:A: pairing antiparallel cis VIII Ww/Ww } 0 15 {'0'2653R:A -> '0'2091R:G: pairing antiparallel cis VIII Ww/Ww } 0 16 {'0'2653R:A -> '0'2654R:C: adjacent_5p upward } 0 17 {'0'2654R:C -> '0'2653R:A: adjacent_3p downward } 0 18 {'0'2654R:C -> '0'2655R:U: adjacent_5p } 0 19 {'0'2655R:U -> '0'2654R:C: adjacent_3p } 0 20 {'0'2655R:U -> '0'2656R:G: adjacent_5p upward } 0 21 {'0'2656R:G -> '0'2655R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2089R:A 0 1 '0'2090R:G 0 2 '0'2091R:G 0 3 '0'2092R:G 0 4 '0'2652R:U 0 5 '0'2653R:A 0 6 '0'2654R:C 0 7 '0'2655R:U 0 [Edges] 0 {'0'2089R:A -> '0'2090R:G: adjacent_5p upward } 0 1 {'0'2090R:G -> '0'2089R:A: adjacent_3p downward } 0 2 {'0'2089R:A -> '0'2655R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2655R:U -> '0'2089R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2090R:G -> '0'2091R:G: adjacent_5p upward } 0 5 {'0'2091R:G -> '0'2090R:G: adjacent_3p downward } 0 6 {'0'2090R:G -> '0'2654R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2654R:C -> '0'2090R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2091R:G -> '0'2092R:G: adjacent_5p upward } 0 9 {'0'2092R:G -> '0'2091R:G: adjacent_3p downward } 0 10 {'0'2091R:G -> '0'2653R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {'0'2653R:A -> '0'2091R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {'0'2092R:G -> '0'2652R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 13 {'0'2652R:U -> '0'2092R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 14 {'0'2652R:U -> '0'2653R:A: adjacent_5p upward } 0 15 {'0'2653R:A -> '0'2652R:U: adjacent_3p downward } 0 16 {'0'2653R:A -> '0'2654R:C: adjacent_5p upward } 0 17 {'0'2654R:C -> '0'2653R:A: adjacent_3p downward } 0 18 {'0'2654R:C -> '0'2655R:U: adjacent_5p } 0 19 {'0'2655R:U -> '0'2654R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2105R:C 0 1 '0'2106R:C 0 2 '0'2107R:U 0 3 '0'2108R:A 0 4 '0'2478R:U 0 5 '0'2479R:A 0 6 '0'2480R:G 0 7 '0'2481R:G 0 [Edges] 0 {'0'2105R:C -> '0'2106R:C: adjacent_5p upward } 0 1 {'0'2106R:C -> '0'2105R:C: adjacent_3p downward } 0 2 {'0'2105R:C -> '0'2481R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2481R:G -> '0'2105R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2106R:C -> '0'2107R:U: adjacent_5p upward } 0 5 {'0'2107R:U -> '0'2106R:C: adjacent_3p downward } 0 6 {'0'2106R:C -> '0'2480R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2480R:G -> '0'2106R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2107R:U -> '0'2108R:A: adjacent_5p upward } 0 9 {'0'2108R:A -> '0'2107R:U: adjacent_3p downward } 0 10 {'0'2107R:U -> '0'2479R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2479R:A -> '0'2107R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2108R:A -> '0'2478R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2478R:U -> '0'2108R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2108R:A -> '0'2479R:A: outward } 0 15 {'0'2479R:A -> '0'2108R:A: outward } 0 16 {'0'2478R:U -> '0'2479R:A: adjacent_5p upward } 0 17 {'0'2479R:A -> '0'2478R:U: adjacent_3p downward } 0 18 {'0'2479R:A -> '0'2480R:G: adjacent_5p upward } 0 19 {'0'2480R:G -> '0'2479R:A: adjacent_3p downward } 0 20 {'0'2480R:G -> '0'2481R:G: adjacent_5p upward } 0 21 {'0'2481R:G -> '0'2480R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2112R:A 0 1 '0'2113R:G 0 2 '0'2114R:C 0 3 '0'2115R:U 0 4 '0'2470R:A 0 5 '0'2471R:G 0 6 '0'2472R:C 0 7 '0'2473R:U 0 [Edges] 0 {'0'2112R:A -> '0'2113R:G: adjacent_5p upward } 0 1 {'0'2113R:G -> '0'2112R:A: adjacent_3p downward } 0 2 {'0'2112R:A -> '0'2473R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2473R:U -> '0'2112R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2113R:G -> '0'2114R:C: adjacent_5p upward } 0 5 {'0'2114R:C -> '0'2113R:G: adjacent_3p downward } 0 6 {'0'2113R:G -> '0'2472R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2472R:C -> '0'2113R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2114R:C -> '0'2115R:U: adjacent_5p } 0 9 {'0'2115R:U -> '0'2114R:C: adjacent_3p } 0 10 {'0'2114R:C -> '0'2471R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2471R:G -> '0'2114R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2115R:U -> '0'2470R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2470R:A -> '0'2115R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2470R:A -> '0'2471R:G: adjacent_5p upward } 0 15 {'0'2471R:G -> '0'2470R:A: adjacent_3p downward } 0 16 {'0'2471R:G -> '0'2472R:C: adjacent_5p upward } 0 17 {'0'2472R:C -> '0'2471R:G: adjacent_3p downward } 0 18 {'0'2472R:C -> '0'2473R:U: adjacent_5p upward } 0 19 {'0'2473R:U -> '0'2472R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2118R:A 0 1 '0'2119R:C 0 2 '0'2120R:U 0 3 '0'2121R:G 0 4 '0'2273R:C 0 5 '0'2274R:A 0 6 '0'2275R:G 0 7 '0'2276R:U 0 [Edges] 0 {'0'2118R:A -> '0'2119R:C: adjacent_5p upward } 0 1 {'0'2119R:C -> '0'2118R:A: adjacent_3p downward } 0 2 {'0'2118R:A -> '0'2276R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2276R:U -> '0'2118R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2119R:C -> '0'2120R:U: adjacent_5p upward } 0 5 {'0'2120R:U -> '0'2119R:C: adjacent_3p downward } 0 6 {'0'2119R:C -> '0'2275R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2275R:G -> '0'2119R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2120R:U -> '0'2121R:G: adjacent_5p upward } 0 9 {'0'2121R:G -> '0'2120R:U: adjacent_3p downward } 0 10 {'0'2120R:U -> '0'2274R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2274R:A -> '0'2120R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2121R:G -> '0'2273R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2273R:C -> '0'2121R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2121R:G -> '0'2274R:A: outward } 0 15 {'0'2274R:A -> '0'2121R:G: outward } 0 16 {'0'2273R:C -> '0'2274R:A: adjacent_5p } 0 17 {'0'2274R:A -> '0'2273R:C: adjacent_3p } 0 18 {'0'2274R:A -> '0'2275R:G: adjacent_5p upward } 0 19 {'0'2275R:G -> '0'2274R:A: adjacent_3p downward } 0 20 {'0'2275R:G -> '0'2276R:U: adjacent_5p upward } 0 21 {'0'2276R:U -> '0'2275R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2119R:C 0 1 '0'2120R:U 0 2 '0'2121R:G 0 3 '0'2122R:C 0 4 '0'2272R:G 0 5 '0'2273R:C 0 6 '0'2274R:A 0 7 '0'2275R:G 0 [Edges] 0 {'0'2119R:C -> '0'2120R:U: adjacent_5p upward } 0 1 {'0'2120R:U -> '0'2119R:C: adjacent_3p downward } 0 2 {'0'2119R:C -> '0'2275R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2275R:G -> '0'2119R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2120R:U -> '0'2121R:G: adjacent_5p upward } 0 5 {'0'2121R:G -> '0'2120R:U: adjacent_3p downward } 0 6 {'0'2120R:U -> '0'2274R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2274R:A -> '0'2120R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2121R:G -> '0'2122R:C: adjacent_5p upward } 0 9 {'0'2122R:C -> '0'2121R:G: adjacent_3p downward } 0 10 {'0'2121R:G -> '0'2273R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2273R:C -> '0'2121R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2121R:G -> '0'2274R:A: outward } 0 13 {'0'2274R:A -> '0'2121R:G: outward } 0 14 {'0'2122R:C -> '0'2272R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2272R:G -> '0'2122R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2272R:G -> '0'2273R:C: adjacent_5p upward } 0 17 {'0'2273R:C -> '0'2272R:G: adjacent_3p downward } 0 18 {'0'2273R:C -> '0'2274R:A: adjacent_5p } 0 19 {'0'2274R:A -> '0'2273R:C: adjacent_3p } 0 20 {'0'2274R:A -> '0'2275R:G: adjacent_5p upward } 0 21 {'0'2275R:G -> '0'2274R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2123R:A 0 1 '0'2124R:G 0 2 '0'2125R:G 0 3 '0'2126R:C 0 4 '0'2267R:G 0 5 '0'2268R:C 0 6 '0'2269R:C 0 7 '0'2270R:G 0 [Edges] 0 {'0'2123R:A -> '0'2124R:G: adjacent_5p upward } 0 1 {'0'2124R:G -> '0'2123R:A: adjacent_3p downward } 0 2 {'0'2123R:A -> '0'2270R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'2270R:G -> '0'2123R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'2124R:G -> '0'2125R:G: adjacent_5p upward } 0 5 {'0'2125R:G -> '0'2124R:G: adjacent_3p downward } 0 6 {'0'2124R:G -> '0'2269R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2269R:C -> '0'2124R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2125R:G -> '0'2126R:C: adjacent_5p upward } 0 9 {'0'2126R:C -> '0'2125R:G: adjacent_3p downward } 0 10 {'0'2125R:G -> '0'2268R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2268R:C -> '0'2125R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2126R:C -> '0'2267R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2267R:G -> '0'2126R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2267R:G -> '0'2268R:C: adjacent_5p upward } 0 15 {'0'2268R:C -> '0'2267R:G: adjacent_3p downward } 0 16 {'0'2268R:C -> '0'2269R:C: adjacent_5p upward } 0 17 {'0'2269R:C -> '0'2268R:C: adjacent_3p downward } 0 18 {'0'2269R:C -> '0'2270R:G: adjacent_5p upward } 0 19 {'0'2270R:G -> '0'2269R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2124R:G 0 1 '0'2125R:G 0 2 '0'2126R:C 0 3 '0'2127R:U 0 4 '0'2266R:A 0 5 '0'2267R:G 0 6 '0'2268R:C 0 7 '0'2269R:C 0 [Edges] 0 {'0'2124R:G -> '0'2125R:G: adjacent_5p upward } 0 1 {'0'2125R:G -> '0'2124R:G: adjacent_3p downward } 0 2 {'0'2124R:G -> '0'2269R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2269R:C -> '0'2124R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2125R:G -> '0'2126R:C: adjacent_5p upward } 0 5 {'0'2126R:C -> '0'2125R:G: adjacent_3p downward } 0 6 {'0'2125R:G -> '0'2268R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2268R:C -> '0'2125R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2126R:C -> '0'2127R:U: adjacent_5p upward } 0 9 {'0'2127R:U -> '0'2126R:C: adjacent_3p downward } 0 10 {'0'2126R:C -> '0'2267R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2267R:G -> '0'2126R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2127R:U -> '0'2266R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2266R:A -> '0'2127R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2266R:A -> '0'2267R:G: adjacent_5p upward } 0 15 {'0'2267R:G -> '0'2266R:A: adjacent_3p downward } 0 16 {'0'2267R:G -> '0'2268R:C: adjacent_5p upward } 0 17 {'0'2268R:C -> '0'2267R:G: adjacent_3p downward } 0 18 {'0'2268R:C -> '0'2269R:C: adjacent_5p upward } 0 19 {'0'2269R:C -> '0'2268R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2125R:G 0 1 '0'2126R:C 0 2 '0'2127R:U 0 3 '0'2128R:G 0 4 '0'2265R:U 0 5 '0'2266R:A 0 6 '0'2267R:G 0 7 '0'2268R:C 0 [Edges] 0 {'0'2125R:G -> '0'2126R:C: adjacent_5p upward } 0 1 {'0'2126R:C -> '0'2125R:G: adjacent_3p downward } 0 2 {'0'2125R:G -> '0'2268R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2268R:C -> '0'2125R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2126R:C -> '0'2127R:U: adjacent_5p upward } 0 5 {'0'2127R:U -> '0'2126R:C: adjacent_3p downward } 0 6 {'0'2126R:C -> '0'2267R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2267R:G -> '0'2126R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2127R:U -> '0'2128R:G: adjacent_5p } 0 9 {'0'2128R:G -> '0'2127R:U: adjacent_3p } 0 10 {'0'2127R:U -> '0'2266R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2266R:A -> '0'2127R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2128R:G -> '0'2265R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {'0'2265R:U -> '0'2128R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {'0'2128R:G -> '0'2266R:A: outward } 0 15 {'0'2266R:A -> '0'2128R:G: outward } 0 16 {'0'2265R:U -> '0'2266R:A: adjacent_5p } 0 17 {'0'2266R:A -> '0'2265R:U: adjacent_3p } 0 18 {'0'2266R:A -> '0'2267R:G: adjacent_5p upward } 0 19 {'0'2267R:G -> '0'2266R:A: adjacent_3p downward } 0 20 {'0'2267R:G -> '0'2268R:C: adjacent_5p upward } 0 21 {'0'2268R:C -> '0'2267R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2126R:C 0 1 '0'2127R:U 0 2 '0'2128R:G 0 3 '0'2129R:U 0 4 '0'2264R:A 0 5 '0'2265R:U 0 6 '0'2266R:A 0 7 '0'2267R:G 0 [Edges] 0 {'0'2126R:C -> '0'2127R:U: adjacent_5p upward } 0 1 {'0'2127R:U -> '0'2126R:C: adjacent_3p downward } 0 2 {'0'2126R:C -> '0'2267R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2267R:G -> '0'2126R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2127R:U -> '0'2128R:G: adjacent_5p } 0 5 {'0'2128R:G -> '0'2127R:U: adjacent_3p } 0 6 {'0'2127R:U -> '0'2266R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2266R:A -> '0'2127R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2128R:G -> '0'2129R:U: adjacent_5p upward } 0 9 {'0'2129R:U -> '0'2128R:G: adjacent_3p downward } 0 10 {'0'2128R:G -> '0'2265R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'2265R:U -> '0'2128R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'2128R:G -> '0'2266R:A: outward } 0 13 {'0'2266R:A -> '0'2128R:G: outward } 0 14 {'0'2129R:U -> '0'2264R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2264R:A -> '0'2129R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2264R:A -> '0'2265R:U: adjacent_5p upward } 0 17 {'0'2265R:U -> '0'2264R:A: adjacent_3p downward } 0 18 {'0'2265R:U -> '0'2266R:A: adjacent_5p } 0 19 {'0'2266R:A -> '0'2265R:U: adjacent_3p } 0 20 {'0'2266R:A -> '0'2267R:G: adjacent_5p upward } 0 21 {'0'2267R:G -> '0'2266R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2127R:U 0 1 '0'2128R:G 0 2 '0'2129R:U 0 3 '0'2130R:C 0 4 '0'2263R:G 0 5 '0'2264R:A 0 6 '0'2265R:U 0 7 '0'2266R:A 0 [Edges] 0 {'0'2127R:U -> '0'2128R:G: adjacent_5p } 0 1 {'0'2128R:G -> '0'2127R:U: adjacent_3p } 0 2 {'0'2127R:U -> '0'2266R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2266R:A -> '0'2127R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2128R:G -> '0'2129R:U: adjacent_5p upward } 0 5 {'0'2129R:U -> '0'2128R:G: adjacent_3p downward } 0 6 {'0'2128R:G -> '0'2265R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'2265R:U -> '0'2128R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'2128R:G -> '0'2266R:A: outward } 0 9 {'0'2266R:A -> '0'2128R:G: outward } 0 10 {'0'2129R:U -> '0'2130R:C: adjacent_5p } 0 11 {'0'2130R:C -> '0'2129R:U: adjacent_3p } 0 12 {'0'2129R:U -> '0'2264R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2264R:A -> '0'2129R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2130R:C -> '0'2263R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2263R:G -> '0'2130R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2263R:G -> '0'2264R:A: adjacent_5p upward } 0 17 {'0'2264R:A -> '0'2263R:G: adjacent_3p downward } 0 18 {'0'2264R:A -> '0'2265R:U: adjacent_5p upward } 0 19 {'0'2265R:U -> '0'2264R:A: adjacent_3p downward } 0 20 {'0'2265R:U -> '0'2266R:A: adjacent_5p } 0 21 {'0'2266R:A -> '0'2265R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2128R:G 0 1 '0'2129R:U 0 2 '0'2130R:C 0 3 '0'2131R:G 0 4 '0'2262R:C 0 5 '0'2263R:G 0 6 '0'2264R:A 0 7 '0'2265R:U 0 [Edges] 0 {'0'2128R:G -> '0'2129R:U: adjacent_5p upward } 0 1 {'0'2129R:U -> '0'2128R:G: adjacent_3p downward } 0 2 {'0'2128R:G -> '0'2265R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'2265R:U -> '0'2128R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'2129R:U -> '0'2130R:C: adjacent_5p } 0 5 {'0'2130R:C -> '0'2129R:U: adjacent_3p } 0 6 {'0'2129R:U -> '0'2264R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2264R:A -> '0'2129R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2130R:C -> '0'2131R:G: adjacent_5p upward } 0 9 {'0'2131R:G -> '0'2130R:C: adjacent_3p downward } 0 10 {'0'2130R:C -> '0'2263R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2263R:G -> '0'2130R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2131R:G -> '0'2262R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2262R:C -> '0'2131R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2131R:G -> '0'2263R:G: outward } 0 15 {'0'2263R:G -> '0'2131R:G: outward } 0 16 {'0'2262R:C -> '0'2263R:G: adjacent_5p upward } 0 17 {'0'2263R:G -> '0'2262R:C: adjacent_3p downward } 0 18 {'0'2263R:G -> '0'2264R:A: adjacent_5p upward } 0 19 {'0'2264R:A -> '0'2263R:G: adjacent_3p downward } 0 20 {'0'2264R:A -> '0'2265R:U: adjacent_5p upward } 0 21 {'0'2265R:U -> '0'2264R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2129R:U 0 1 '0'2130R:C 0 2 '0'2131R:G 0 3 '0'2132R:C 0 4 '0'2261R:C 0 5 '0'2262R:C 0 6 '0'2263R:G 0 7 '0'2264R:A 0 [Edges] 0 {'0'2129R:U -> '0'2130R:C: adjacent_5p } 0 1 {'0'2130R:C -> '0'2129R:U: adjacent_3p } 0 2 {'0'2129R:U -> '0'2264R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2264R:A -> '0'2129R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2130R:C -> '0'2131R:G: adjacent_5p upward } 0 5 {'0'2131R:G -> '0'2130R:C: adjacent_3p downward } 0 6 {'0'2130R:C -> '0'2263R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2263R:G -> '0'2130R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2131R:G -> '0'2132R:C: adjacent_5p upward } 0 9 {'0'2132R:C -> '0'2131R:G: adjacent_3p downward } 0 10 {'0'2131R:G -> '0'2262R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2262R:C -> '0'2131R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2131R:G -> '0'2263R:G: outward } 0 13 {'0'2263R:G -> '0'2131R:G: outward } 0 14 {'0'2132R:C -> '0'2261R:C: pairing antiparallel cis one_hbond 137 Ws/Wh } 0 15 {'0'2261R:C -> '0'2132R:C: pairing antiparallel cis one_hbond 137 Wh/Ws } 0 16 {'0'2261R:C -> '0'2262R:C: adjacent_5p upward } 0 17 {'0'2262R:C -> '0'2261R:C: adjacent_3p downward } 0 18 {'0'2262R:C -> '0'2263R:G: adjacent_5p upward } 0 19 {'0'2263R:G -> '0'2262R:C: adjacent_3p downward } 0 20 {'0'2263R:G -> '0'2264R:A: adjacent_5p upward } 0 21 {'0'2264R:A -> '0'2263R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2130R:C 0 1 '0'2131R:G 0 2 '0'2132R:C 0 3 '0'2133R:U 0 4 '0'2260R:A 0 5 '0'2261R:C 0 6 '0'2262R:C 0 7 '0'2263R:G 0 [Edges] 0 {'0'2130R:C -> '0'2131R:G: adjacent_5p upward } 0 1 {'0'2131R:G -> '0'2130R:C: adjacent_3p downward } 0 2 {'0'2130R:C -> '0'2263R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2263R:G -> '0'2130R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2131R:G -> '0'2132R:C: adjacent_5p upward } 0 5 {'0'2132R:C -> '0'2131R:G: adjacent_3p downward } 0 6 {'0'2131R:G -> '0'2262R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2262R:C -> '0'2131R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2131R:G -> '0'2263R:G: outward } 0 9 {'0'2263R:G -> '0'2131R:G: outward } 0 10 {'0'2132R:C -> '0'2133R:U: adjacent_5p inward } 0 11 {'0'2133R:U -> '0'2132R:C: adjacent_3p inward } 0 12 {'0'2132R:C -> '0'2261R:C: pairing antiparallel cis one_hbond 137 Ws/Wh } 0 13 {'0'2261R:C -> '0'2132R:C: pairing antiparallel cis one_hbond 137 Wh/Ws } 0 14 {'0'2133R:U -> '0'2260R:A: pairing parallel trans one_hbond 50 Hw/Hw } 0 15 {'0'2260R:A -> '0'2133R:U: pairing parallel trans one_hbond 50 Hw/Hw } 0 16 {'0'2260R:A -> '0'2261R:C: adjacent_5p upward } 0 17 {'0'2261R:C -> '0'2260R:A: adjacent_3p downward } 0 18 {'0'2261R:C -> '0'2262R:C: adjacent_5p upward } 0 19 {'0'2262R:C -> '0'2261R:C: adjacent_3p downward } 0 20 {'0'2262R:C -> '0'2263R:G: adjacent_5p upward } 0 21 {'0'2263R:G -> '0'2262R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2244R:A 0 1 '0'2245R:C 0 2 '0'2246R:U 0 3 '0'2247R:C 0 4 '0'2254R:G 0 5 '0'2255R:A 0 6 '0'2256R:G 0 7 '0'2257R:G 0 [Edges] 0 {'0'2244R:A -> '0'2245R:C: adjacent_5p upward } 0 1 {'0'2245R:C -> '0'2244R:A: adjacent_3p downward } 0 2 {'0'2244R:A -> '0'2257R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'2257R:G -> '0'2244R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'2245R:C -> '0'2246R:U: adjacent_5p upward } 0 5 {'0'2246R:U -> '0'2245R:C: adjacent_3p downward } 0 6 {'0'2245R:C -> '0'2256R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2256R:G -> '0'2245R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2246R:U -> '0'2247R:C: adjacent_5p upward } 0 9 {'0'2247R:C -> '0'2246R:U: adjacent_3p downward } 0 10 {'0'2246R:U -> '0'2255R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2255R:A -> '0'2246R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2247R:C -> '0'2254R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2254R:G -> '0'2247R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2254R:G -> '0'2255R:A: adjacent_5p upward } 0 15 {'0'2255R:A -> '0'2254R:G: adjacent_3p downward } 0 16 {'0'2255R:A -> '0'2256R:G: adjacent_5p upward } 0 17 {'0'2256R:G -> '0'2255R:A: adjacent_3p downward } 0 18 {'0'2256R:G -> '0'2257R:G: adjacent_5p upward } 0 19 {'0'2257R:G -> '0'2256R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2245R:C 0 1 '0'2246R:U 0 2 '0'2247R:C 0 3 '0'2248R:C 0 4 '0'2253R:G 0 5 '0'2254R:G 0 6 '0'2255R:A 0 7 '0'2256R:G 0 [Edges] 0 {'0'2245R:C -> '0'2246R:U: adjacent_5p upward } 0 1 {'0'2246R:U -> '0'2245R:C: adjacent_3p downward } 0 2 {'0'2245R:C -> '0'2256R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2256R:G -> '0'2245R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2246R:U -> '0'2247R:C: adjacent_5p upward } 0 5 {'0'2247R:C -> '0'2246R:U: adjacent_3p downward } 0 6 {'0'2246R:U -> '0'2255R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2255R:A -> '0'2246R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2247R:C -> '0'2248R:C: adjacent_5p upward } 0 9 {'0'2248R:C -> '0'2247R:C: adjacent_3p downward } 0 10 {'0'2247R:C -> '0'2254R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2254R:G -> '0'2247R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2248R:C -> '0'2253R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2253R:G -> '0'2248R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2248R:C -> '0'2254R:G: outward } 0 15 {'0'2254R:G -> '0'2248R:C: outward } 0 16 {'0'2253R:G -> '0'2254R:G: adjacent_5p upward } 0 17 {'0'2254R:G -> '0'2253R:G: adjacent_3p downward } 0 18 {'0'2254R:G -> '0'2255R:A: adjacent_5p upward } 0 19 {'0'2255R:A -> '0'2254R:G: adjacent_3p downward } 0 20 {'0'2255R:A -> '0'2256R:G: adjacent_5p upward } 0 21 {'0'2256R:G -> '0'2255R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2246R:U 0 1 '0'2247R:C 0 2 '0'2248R:C 0 3 '0'2249R:G 0 4 '0'2252R:A 0 5 '0'2253R:G 0 6 '0'2254R:G 0 7 '0'2255R:A 0 [Edges] 0 {'0'2246R:U -> '0'2247R:C: adjacent_5p upward } 0 1 {'0'2247R:C -> '0'2246R:U: adjacent_3p downward } 0 2 {'0'2246R:U -> '0'2255R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2255R:A -> '0'2246R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2247R:C -> '0'2248R:C: adjacent_5p upward } 0 5 {'0'2248R:C -> '0'2247R:C: adjacent_3p downward } 0 6 {'0'2247R:C -> '0'2254R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2254R:G -> '0'2247R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2248R:C -> '0'2249R:G: adjacent_5p upward } 0 9 {'0'2249R:G -> '0'2248R:C: adjacent_3p downward } 0 10 {'0'2248R:C -> '0'2253R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2253R:G -> '0'2248R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2248R:C -> '0'2254R:G: outward } 0 13 {'0'2254R:G -> '0'2248R:C: outward } 0 14 {'0'2249R:G -> '0'2252R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 15 {'0'2252R:A -> '0'2249R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 16 {'0'2249R:G -> '0'2253R:G: outward } 0 17 {'0'2253R:G -> '0'2249R:G: outward } 0 18 {'0'2252R:A -> '0'2253R:G: adjacent_5p upward } 0 19 {'0'2253R:G -> '0'2252R:A: adjacent_3p downward } 0 20 {'0'2253R:G -> '0'2254R:G: adjacent_5p upward } 0 21 {'0'2254R:G -> '0'2253R:G: adjacent_3p downward } 0 22 {'0'2254R:G -> '0'2255R:A: adjacent_5p upward } 0 23 {'0'2255R:A -> '0'2254R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 '0'2293R:G 0 1 '0'2294R:C 0 2 '0'2295R:G 0 3 '0'2296R:C 0 4 '0'2312R:G 0 5 '0'2313R:C 0 6 '0'2314R:G 0 7 '0'2315R:C 0 [Edges] 0 {'0'2293R:G -> '0'2294R:C: adjacent_5p upward } 0 1 {'0'2294R:C -> '0'2293R:G: adjacent_3p downward } 0 2 {'0'2293R:G -> '0'2315R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2315R:C -> '0'2293R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2294R:C -> '0'2295R:G: adjacent_5p } 0 5 {'0'2295R:G -> '0'2294R:C: adjacent_3p } 0 6 {'0'2294R:C -> '0'2314R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2314R:G -> '0'2294R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2295R:G -> '0'2296R:C: adjacent_5p upward } 0 9 {'0'2296R:C -> '0'2295R:G: adjacent_3p downward } 0 10 {'0'2295R:G -> '0'2313R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2313R:C -> '0'2295R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2295R:G -> '0'2314R:G: outward } 0 13 {'0'2314R:G -> '0'2295R:G: outward } 0 14 {'0'2296R:C -> '0'2312R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2312R:G -> '0'2296R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2312R:G -> '0'2313R:C: adjacent_5p upward } 0 17 {'0'2313R:C -> '0'2312R:G: adjacent_3p downward } 0 18 {'0'2313R:C -> '0'2314R:G: adjacent_5p } 0 19 {'0'2314R:G -> '0'2313R:C: adjacent_3p } 0 20 {'0'2314R:G -> '0'2315R:C: adjacent_5p upward } 0 21 {'0'2315R:C -> '0'2314R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2294R:C 0 1 '0'2295R:G 0 2 '0'2296R:C 0 3 '0'2297R:U 0 4 '0'2311R:A 0 5 '0'2312R:G 0 6 '0'2313R:C 0 7 '0'2314R:G 0 [Edges] 0 {'0'2294R:C -> '0'2295R:G: adjacent_5p } 0 1 {'0'2295R:G -> '0'2294R:C: adjacent_3p } 0 2 {'0'2294R:C -> '0'2314R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2314R:G -> '0'2294R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2295R:G -> '0'2296R:C: adjacent_5p upward } 0 5 {'0'2296R:C -> '0'2295R:G: adjacent_3p downward } 0 6 {'0'2295R:G -> '0'2313R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2313R:C -> '0'2295R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2295R:G -> '0'2314R:G: outward } 0 9 {'0'2314R:G -> '0'2295R:G: outward } 0 10 {'0'2296R:C -> '0'2297R:U: adjacent_5p upward } 0 11 {'0'2297R:U -> '0'2296R:C: adjacent_3p downward } 0 12 {'0'2296R:C -> '0'2312R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2312R:G -> '0'2296R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2297R:U -> '0'2311R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2311R:A -> '0'2297R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2311R:A -> '0'2312R:G: adjacent_5p upward } 0 17 {'0'2312R:G -> '0'2311R:A: adjacent_3p downward } 0 18 {'0'2312R:G -> '0'2313R:C: adjacent_5p upward } 0 19 {'0'2313R:C -> '0'2312R:G: adjacent_3p downward } 0 20 {'0'2313R:C -> '0'2314R:G: adjacent_5p } 0 21 {'0'2314R:G -> '0'2313R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2295R:G 0 1 '0'2296R:C 0 2 '0'2297R:U 0 3 '0'2298R:C 0 4 '0'2310R:G 0 5 '0'2311R:A 0 6 '0'2312R:G 0 7 '0'2313R:C 0 [Edges] 0 {'0'2295R:G -> '0'2296R:C: adjacent_5p upward } 0 1 {'0'2296R:C -> '0'2295R:G: adjacent_3p downward } 0 2 {'0'2295R:G -> '0'2313R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2313R:C -> '0'2295R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2296R:C -> '0'2297R:U: adjacent_5p upward } 0 5 {'0'2297R:U -> '0'2296R:C: adjacent_3p downward } 0 6 {'0'2296R:C -> '0'2312R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2312R:G -> '0'2296R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2297R:U -> '0'2298R:C: adjacent_5p upward } 0 9 {'0'2298R:C -> '0'2297R:U: adjacent_3p downward } 0 10 {'0'2297R:U -> '0'2311R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2311R:A -> '0'2297R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2298R:C -> '0'2310R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2310R:G -> '0'2298R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2310R:G -> '0'2311R:A: adjacent_5p upward } 0 15 {'0'2311R:A -> '0'2310R:G: adjacent_3p downward } 0 16 {'0'2311R:A -> '0'2312R:G: adjacent_5p upward } 0 17 {'0'2312R:G -> '0'2311R:A: adjacent_3p downward } 0 18 {'0'2312R:G -> '0'2313R:C: adjacent_5p upward } 0 19 {'0'2313R:C -> '0'2312R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2323R:G 0 1 '0'2324R:G 0 2 '0'2325R:C 0 3 '0'2326R:U 0 4 '0'2374R:A 0 5 '0'2375R:G 0 6 '0'2376R:C 0 7 '0'2377R:U 0 [Edges] 0 {'0'2323R:G -> '0'2324R:G: adjacent_5p upward } 0 1 {'0'2324R:G -> '0'2323R:G: adjacent_3p downward } 0 2 {'0'2323R:G -> '0'2377R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'2377R:U -> '0'2323R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'2324R:G -> '0'2325R:C: adjacent_5p upward } 0 5 {'0'2325R:C -> '0'2324R:G: adjacent_3p downward } 0 6 {'0'2324R:G -> '0'2376R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2376R:C -> '0'2324R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2325R:C -> '0'2326R:U: adjacent_5p upward } 0 9 {'0'2326R:U -> '0'2325R:C: adjacent_3p downward } 0 10 {'0'2325R:C -> '0'2375R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2375R:G -> '0'2325R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2326R:U -> '0'2374R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2374R:A -> '0'2326R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2374R:A -> '0'2375R:G: adjacent_5p upward } 0 15 {'0'2375R:G -> '0'2374R:A: adjacent_3p downward } 0 16 {'0'2375R:G -> '0'2376R:C: adjacent_5p upward } 0 17 {'0'2376R:C -> '0'2375R:G: adjacent_3p downward } 0 18 {'0'2376R:C -> '0'2377R:U: adjacent_5p upward } 0 19 {'0'2377R:U -> '0'2376R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2324R:G 0 1 '0'2325R:C 0 2 '0'2326R:U 0 3 '0'2327R:A 0 4 '0'2373R:U 0 5 '0'2374R:A 0 6 '0'2375R:G 0 7 '0'2376R:C 0 [Edges] 0 {'0'2324R:G -> '0'2325R:C: adjacent_5p upward } 0 1 {'0'2325R:C -> '0'2324R:G: adjacent_3p downward } 0 2 {'0'2324R:G -> '0'2376R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2376R:C -> '0'2324R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2325R:C -> '0'2326R:U: adjacent_5p upward } 0 5 {'0'2326R:U -> '0'2325R:C: adjacent_3p downward } 0 6 {'0'2325R:C -> '0'2375R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2375R:G -> '0'2325R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2326R:U -> '0'2327R:A: adjacent_5p upward } 0 9 {'0'2327R:A -> '0'2326R:U: adjacent_3p downward } 0 10 {'0'2326R:U -> '0'2374R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2374R:A -> '0'2326R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2327R:A -> '0'2373R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2373R:U -> '0'2327R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2327R:A -> '0'2374R:A: outward } 0 15 {'0'2374R:A -> '0'2327R:A: outward } 0 16 {'0'2373R:U -> '0'2374R:A: adjacent_5p upward } 0 17 {'0'2374R:A -> '0'2373R:U: adjacent_3p downward } 0 18 {'0'2374R:A -> '0'2375R:G: adjacent_5p upward } 0 19 {'0'2375R:G -> '0'2374R:A: adjacent_3p downward } 0 20 {'0'2375R:G -> '0'2376R:C: adjacent_5p upward } 0 21 {'0'2376R:C -> '0'2375R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2325R:C 0 1 '0'2326R:U 0 2 '0'2327R:A 0 3 '0'2328R:U 0 4 '0'2372R:A 0 5 '0'2373R:U 0 6 '0'2374R:A 0 7 '0'2375R:G 0 [Edges] 0 {'0'2325R:C -> '0'2326R:U: adjacent_5p upward } 0 1 {'0'2326R:U -> '0'2325R:C: adjacent_3p downward } 0 2 {'0'2325R:C -> '0'2375R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2375R:G -> '0'2325R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2326R:U -> '0'2327R:A: adjacent_5p upward } 0 5 {'0'2327R:A -> '0'2326R:U: adjacent_3p downward } 0 6 {'0'2326R:U -> '0'2374R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2374R:A -> '0'2326R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2327R:A -> '0'2328R:U: adjacent_5p upward } 0 9 {'0'2328R:U -> '0'2327R:A: adjacent_3p downward } 0 10 {'0'2327R:A -> '0'2373R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2373R:U -> '0'2327R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2327R:A -> '0'2374R:A: outward } 0 13 {'0'2374R:A -> '0'2327R:A: outward } 0 14 {'0'2328R:U -> '0'2372R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2372R:A -> '0'2328R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2372R:A -> '0'2373R:U: adjacent_5p upward } 0 17 {'0'2373R:U -> '0'2372R:A: adjacent_3p downward } 0 18 {'0'2373R:U -> '0'2374R:A: adjacent_5p upward } 0 19 {'0'2374R:A -> '0'2373R:U: adjacent_3p downward } 0 20 {'0'2374R:A -> '0'2375R:G: adjacent_5p upward } 0 21 {'0'2375R:G -> '0'2374R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2326R:U 0 1 '0'2327R:A 0 2 '0'2328R:U 0 3 '0'2329R:C 0 4 '0'2371R:G 0 5 '0'2372R:A 0 6 '0'2373R:U 0 7 '0'2374R:A 0 [Edges] 0 {'0'2326R:U -> '0'2327R:A: adjacent_5p upward } 0 1 {'0'2327R:A -> '0'2326R:U: adjacent_3p downward } 0 2 {'0'2326R:U -> '0'2374R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2374R:A -> '0'2326R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2327R:A -> '0'2328R:U: adjacent_5p upward } 0 5 {'0'2328R:U -> '0'2327R:A: adjacent_3p downward } 0 6 {'0'2327R:A -> '0'2373R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2373R:U -> '0'2327R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2327R:A -> '0'2374R:A: outward } 0 9 {'0'2374R:A -> '0'2327R:A: outward } 0 10 {'0'2328R:U -> '0'2329R:C: adjacent_5p upward } 0 11 {'0'2329R:C -> '0'2328R:U: adjacent_3p downward } 0 12 {'0'2328R:U -> '0'2372R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2372R:A -> '0'2328R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2329R:C -> '0'2371R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2371R:G -> '0'2329R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2371R:G -> '0'2372R:A: adjacent_5p upward } 0 17 {'0'2372R:A -> '0'2371R:G: adjacent_3p downward } 0 18 {'0'2372R:A -> '0'2373R:U: adjacent_5p upward } 0 19 {'0'2373R:U -> '0'2372R:A: adjacent_3p downward } 0 20 {'0'2373R:U -> '0'2374R:A: adjacent_5p upward } 0 21 {'0'2374R:A -> '0'2373R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2332R:A 0 1 '0'2333R:G 0 2 '0'2334R:C 0 3 '0'2335R:C 0 4 '0'2349R:G 0 5 '0'2350R:G 0 6 '0'2351R:C 0 7 '0'2352R:G 0 [Edges] 0 {'0'2332R:A -> '0'2333R:G: adjacent_5p upward } 0 1 {'0'2333R:G -> '0'2332R:A: adjacent_3p downward } 0 2 {'0'2332R:A -> '0'2352R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'2352R:G -> '0'2332R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'2333R:G -> '0'2334R:C: adjacent_5p upward } 0 5 {'0'2334R:C -> '0'2333R:G: adjacent_3p downward } 0 6 {'0'2333R:G -> '0'2351R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2351R:C -> '0'2333R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2334R:C -> '0'2335R:C: adjacent_5p } 0 9 {'0'2335R:C -> '0'2334R:C: adjacent_3p } 0 10 {'0'2334R:C -> '0'2350R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2350R:G -> '0'2334R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2335R:C -> '0'2349R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2349R:G -> '0'2335R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2349R:G -> '0'2350R:G: adjacent_5p upward } 0 15 {'0'2350R:G -> '0'2349R:G: adjacent_3p downward } 0 16 {'0'2350R:G -> '0'2351R:C: adjacent_5p upward } 0 17 {'0'2351R:C -> '0'2350R:G: adjacent_3p downward } 0 18 {'0'2351R:C -> '0'2352R:G: adjacent_5p upward } 0 19 {'0'2352R:G -> '0'2351R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2333R:G 0 1 '0'2334R:C 0 2 '0'2335R:C 0 3 '0'2336R:G 0 4 '0'2348R:C 0 5 '0'2349R:G 0 6 '0'2350R:G 0 7 '0'2351R:C 0 [Edges] 0 {'0'2333R:G -> '0'2334R:C: adjacent_5p upward } 0 1 {'0'2334R:C -> '0'2333R:G: adjacent_3p downward } 0 2 {'0'2333R:G -> '0'2351R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2351R:C -> '0'2333R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2334R:C -> '0'2335R:C: adjacent_5p } 0 5 {'0'2335R:C -> '0'2334R:C: adjacent_3p } 0 6 {'0'2334R:C -> '0'2350R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2350R:G -> '0'2334R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2335R:C -> '0'2336R:G: adjacent_5p upward } 0 9 {'0'2336R:G -> '0'2335R:C: adjacent_3p downward } 0 10 {'0'2335R:C -> '0'2349R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2349R:G -> '0'2335R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2336R:G -> '0'2348R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2348R:C -> '0'2336R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2336R:G -> '0'2349R:G: outward } 0 15 {'0'2349R:G -> '0'2336R:G: outward } 0 16 {'0'2348R:C -> '0'2349R:G: adjacent_5p } 0 17 {'0'2349R:G -> '0'2348R:C: adjacent_3p } 0 18 {'0'2349R:G -> '0'2350R:G: adjacent_5p upward } 0 19 {'0'2350R:G -> '0'2349R:G: adjacent_3p downward } 0 20 {'0'2350R:G -> '0'2351R:C: adjacent_5p upward } 0 21 {'0'2351R:C -> '0'2350R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2334R:C 0 1 '0'2335R:C 0 2 '0'2336R:G 0 3 '0'2337R:G 0 4 '0'2347R:C 0 5 '0'2348R:C 0 6 '0'2349R:G 0 7 '0'2350R:G 0 [Edges] 0 {'0'2334R:C -> '0'2335R:C: adjacent_5p } 0 1 {'0'2335R:C -> '0'2334R:C: adjacent_3p } 0 2 {'0'2334R:C -> '0'2350R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2350R:G -> '0'2334R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2335R:C -> '0'2336R:G: adjacent_5p upward } 0 5 {'0'2336R:G -> '0'2335R:C: adjacent_3p downward } 0 6 {'0'2335R:C -> '0'2349R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2349R:G -> '0'2335R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2336R:G -> '0'2337R:G: adjacent_5p upward } 0 9 {'0'2337R:G -> '0'2336R:G: adjacent_3p downward } 0 10 {'0'2336R:G -> '0'2348R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2348R:C -> '0'2336R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2336R:G -> '0'2349R:G: outward } 0 13 {'0'2349R:G -> '0'2336R:G: outward } 0 14 {'0'2337R:G -> '0'2347R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2347R:C -> '0'2337R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2347R:C -> '0'2348R:C: adjacent_5p upward } 0 17 {'0'2348R:C -> '0'2347R:C: adjacent_3p downward } 0 18 {'0'2348R:C -> '0'2349R:G: adjacent_5p } 0 19 {'0'2349R:G -> '0'2348R:C: adjacent_3p } 0 20 {'0'2349R:G -> '0'2350R:G: adjacent_5p upward } 0 21 {'0'2350R:G -> '0'2349R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2335R:C 0 1 '0'2336R:G 0 2 '0'2337R:G 0 3 '0'2338R:G 0 4 '0'2346R:C 0 5 '0'2347R:C 0 6 '0'2348R:C 0 7 '0'2349R:G 0 [Edges] 0 {'0'2335R:C -> '0'2336R:G: adjacent_5p upward } 0 1 {'0'2336R:G -> '0'2335R:C: adjacent_3p downward } 0 2 {'0'2335R:C -> '0'2349R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2349R:G -> '0'2335R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2336R:G -> '0'2337R:G: adjacent_5p upward } 0 5 {'0'2337R:G -> '0'2336R:G: adjacent_3p downward } 0 6 {'0'2336R:G -> '0'2348R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2348R:C -> '0'2336R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2336R:G -> '0'2349R:G: outward } 0 9 {'0'2349R:G -> '0'2336R:G: outward } 0 10 {'0'2337R:G -> '0'2338R:G: adjacent_5p upward } 0 11 {'0'2338R:G -> '0'2337R:G: adjacent_3p downward } 0 12 {'0'2337R:G -> '0'2347R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2347R:C -> '0'2337R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2338R:G -> '0'2346R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2346R:C -> '0'2338R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2346R:C -> '0'2347R:C: adjacent_5p upward } 0 17 {'0'2347R:C -> '0'2346R:C: adjacent_3p downward } 0 18 {'0'2347R:C -> '0'2348R:C: adjacent_5p upward } 0 19 {'0'2348R:C -> '0'2347R:C: adjacent_3p downward } 0 20 {'0'2348R:C -> '0'2349R:G: adjacent_5p } 0 21 {'0'2349R:G -> '0'2348R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2360R:C 0 1 '0'2361R:A 0 2 '0'2362R:A 0 3 '0'2363R:G 0 4 '0'2423R:C 0 5 '0'2424R:U 0 6 '0'2425R:A 0 7 '0'2426R:G 0 [Edges] 0 {'0'2360R:C -> '0'2361R:A: adjacent_5p } 0 1 {'0'2361R:A -> '0'2360R:C: adjacent_3p } 0 2 {'0'2360R:C -> '0'2426R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2426R:G -> '0'2360R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2361R:A -> '0'2362R:A: adjacent_5p upward } 0 5 {'0'2362R:A -> '0'2361R:A: adjacent_3p downward } 0 6 {'0'2361R:A -> '0'2425R:A: outward } 0 7 {'0'2425R:A -> '0'2361R:A: outward } 0 8 {'0'2362R:A -> '0'2363R:G: adjacent_5p upward } 0 9 {'0'2363R:G -> '0'2362R:A: adjacent_3p downward } 0 10 {'0'2362R:A -> '0'2424R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2424R:U -> '0'2362R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2363R:G -> '0'2423R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2423R:C -> '0'2363R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2423R:C -> '0'2424R:U: adjacent_5p upward } 0 15 {'0'2424R:U -> '0'2423R:C: adjacent_3p downward } 0 16 {'0'2424R:U -> '0'2425R:A: adjacent_5p } 0 17 {'0'2425R:A -> '0'2424R:U: adjacent_3p } 0 18 {'0'2425R:A -> '0'2426R:G: adjacent_5p } 0 19 {'0'2426R:G -> '0'2425R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2381R:C 0 1 '0'2382R:A 0 2 '0'2383R:G 0 3 '0'2384R:U 0 4 '0'2404R:G 0 5 '0'2405R:C 0 6 '0'2406R:U 0 7 '0'2407R:G 0 [Edges] 0 {'0'2381R:C -> '0'2382R:A: adjacent_5p } 0 1 {'0'2382R:A -> '0'2381R:C: adjacent_3p } 0 2 {'0'2381R:C -> '0'2407R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2407R:G -> '0'2381R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2382R:A -> '0'2383R:G: adjacent_5p upward } 0 5 {'0'2383R:G -> '0'2382R:A: adjacent_3p downward } 0 6 {'0'2382R:A -> '0'2406R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2406R:U -> '0'2382R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2382R:A -> '0'2407R:G: outward } 0 9 {'0'2407R:G -> '0'2382R:A: outward } 0 10 {'0'2383R:G -> '0'2384R:U: adjacent_5p upward } 0 11 {'0'2384R:U -> '0'2383R:G: adjacent_3p downward } 0 12 {'0'2383R:G -> '0'2405R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2405R:C -> '0'2383R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2384R:U -> '0'2404R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {'0'2404R:G -> '0'2384R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {'0'2404R:G -> '0'2405R:C: adjacent_5p upward } 0 17 {'0'2405R:C -> '0'2404R:G: adjacent_3p downward } 0 18 {'0'2405R:C -> '0'2406R:U: adjacent_5p upward } 0 19 {'0'2406R:U -> '0'2405R:C: adjacent_3p downward } 0 20 {'0'2406R:U -> '0'2407R:G: adjacent_5p } 0 21 {'0'2407R:G -> '0'2406R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2382R:A 0 1 '0'2383R:G 0 2 '0'2384R:U 0 3 '0'2385R:G 0 4 '0'2403R:C 0 5 '0'2404R:G 0 6 '0'2405R:C 0 7 '0'2406R:U 0 [Edges] 0 {'0'2382R:A -> '0'2383R:G: adjacent_5p upward } 0 1 {'0'2383R:G -> '0'2382R:A: adjacent_3p downward } 0 2 {'0'2382R:A -> '0'2406R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2406R:U -> '0'2382R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2383R:G -> '0'2384R:U: adjacent_5p upward } 0 5 {'0'2384R:U -> '0'2383R:G: adjacent_3p downward } 0 6 {'0'2383R:G -> '0'2405R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2405R:C -> '0'2383R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2384R:U -> '0'2385R:G: adjacent_5p } 0 9 {'0'2385R:G -> '0'2384R:U: adjacent_3p } 0 10 {'0'2384R:U -> '0'2404R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {'0'2404R:G -> '0'2384R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {'0'2385R:G -> '0'2403R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2403R:C -> '0'2385R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2385R:G -> '0'2404R:G: outward } 0 15 {'0'2404R:G -> '0'2385R:G: outward } 0 16 {'0'2403R:C -> '0'2404R:G: adjacent_5p } 0 17 {'0'2404R:G -> '0'2403R:C: adjacent_3p } 0 18 {'0'2404R:G -> '0'2405R:C: adjacent_5p upward } 0 19 {'0'2405R:C -> '0'2404R:G: adjacent_3p downward } 0 20 {'0'2405R:C -> '0'2406R:U: adjacent_5p upward } 0 21 {'0'2406R:U -> '0'2405R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2383R:G 0 1 '0'2384R:U 0 2 '0'2385R:G 0 3 '0'2386R:U 0 4 '0'2402R:A 0 5 '0'2403R:C 0 6 '0'2404R:G 0 7 '0'2405R:C 0 [Edges] 0 {'0'2383R:G -> '0'2384R:U: adjacent_5p upward } 0 1 {'0'2384R:U -> '0'2383R:G: adjacent_3p downward } 0 2 {'0'2383R:G -> '0'2405R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2405R:C -> '0'2383R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2384R:U -> '0'2385R:G: adjacent_5p } 0 5 {'0'2385R:G -> '0'2384R:U: adjacent_3p } 0 6 {'0'2384R:U -> '0'2404R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'2404R:G -> '0'2384R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'2385R:G -> '0'2386R:U: adjacent_5p upward } 0 9 {'0'2386R:U -> '0'2385R:G: adjacent_3p downward } 0 10 {'0'2385R:G -> '0'2403R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2403R:C -> '0'2385R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2385R:G -> '0'2404R:G: outward } 0 13 {'0'2404R:G -> '0'2385R:G: outward } 0 14 {'0'2386R:U -> '0'2402R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2402R:A -> '0'2386R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2402R:A -> '0'2403R:C: adjacent_5p upward } 0 17 {'0'2403R:C -> '0'2402R:A: adjacent_3p downward } 0 18 {'0'2403R:C -> '0'2404R:G: adjacent_5p } 0 19 {'0'2404R:G -> '0'2403R:C: adjacent_3p } 0 20 {'0'2404R:G -> '0'2405R:C: adjacent_5p upward } 0 21 {'0'2405R:C -> '0'2404R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2384R:U 0 1 '0'2385R:G 0 2 '0'2386R:U 0 3 '0'2387R:U 0 4 '0'2401R:A 0 5 '0'2402R:A 0 6 '0'2403R:C 0 7 '0'2404R:G 0 [Edges] 0 {'0'2384R:U -> '0'2385R:G: adjacent_5p } 0 1 {'0'2385R:G -> '0'2384R:U: adjacent_3p } 0 2 {'0'2384R:U -> '0'2404R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'2404R:G -> '0'2384R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'2385R:G -> '0'2386R:U: adjacent_5p upward } 0 5 {'0'2386R:U -> '0'2385R:G: adjacent_3p downward } 0 6 {'0'2385R:G -> '0'2403R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2403R:C -> '0'2385R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2385R:G -> '0'2404R:G: outward } 0 9 {'0'2404R:G -> '0'2385R:G: outward } 0 10 {'0'2386R:U -> '0'2387R:U: adjacent_5p upward } 0 11 {'0'2387R:U -> '0'2386R:U: adjacent_3p downward } 0 12 {'0'2386R:U -> '0'2402R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2402R:A -> '0'2386R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2387R:U -> '0'2401R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2401R:A -> '0'2387R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2401R:A -> '0'2402R:A: adjacent_5p upward } 0 17 {'0'2402R:A -> '0'2401R:A: adjacent_3p downward } 0 18 {'0'2402R:A -> '0'2403R:C: adjacent_5p upward } 0 19 {'0'2403R:C -> '0'2402R:A: adjacent_3p downward } 0 20 {'0'2403R:C -> '0'2404R:G: adjacent_5p } 0 21 {'0'2404R:G -> '0'2403R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2385R:G 0 1 '0'2386R:U 0 2 '0'2387R:U 0 3 '0'2388R:C 0 4 '0'2400R:G 0 5 '0'2401R:A 0 6 '0'2402R:A 0 7 '0'2403R:C 0 [Edges] 0 {'0'2385R:G -> '0'2386R:U: adjacent_5p upward } 0 1 {'0'2386R:U -> '0'2385R:G: adjacent_3p downward } 0 2 {'0'2385R:G -> '0'2403R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2403R:C -> '0'2385R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2386R:U -> '0'2387R:U: adjacent_5p upward } 0 5 {'0'2387R:U -> '0'2386R:U: adjacent_3p downward } 0 6 {'0'2386R:U -> '0'2402R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2402R:A -> '0'2386R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2387R:U -> '0'2388R:C: adjacent_5p upward } 0 9 {'0'2388R:C -> '0'2387R:U: adjacent_3p downward } 0 10 {'0'2387R:U -> '0'2401R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2401R:A -> '0'2387R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2388R:C -> '0'2400R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2400R:G -> '0'2388R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2400R:G -> '0'2401R:A: adjacent_5p upward } 0 15 {'0'2401R:A -> '0'2400R:G: adjacent_3p downward } 0 16 {'0'2401R:A -> '0'2402R:A: adjacent_5p upward } 0 17 {'0'2402R:A -> '0'2401R:A: adjacent_3p downward } 0 18 {'0'2402R:A -> '0'2403R:C: adjacent_5p upward } 0 19 {'0'2403R:C -> '0'2402R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2386R:U 0 1 '0'2387R:U 0 2 '0'2388R:C 0 3 '0'2389R:U 0 4 '0'2399R:G 0 5 '0'2400R:G 0 6 '0'2401R:A 0 7 '0'2402R:A 0 [Edges] 0 {'0'2386R:U -> '0'2387R:U: adjacent_5p upward } 0 1 {'0'2387R:U -> '0'2386R:U: adjacent_3p downward } 0 2 {'0'2386R:U -> '0'2402R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2402R:A -> '0'2386R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2387R:U -> '0'2388R:C: adjacent_5p upward } 0 5 {'0'2388R:C -> '0'2387R:U: adjacent_3p downward } 0 6 {'0'2387R:U -> '0'2401R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2401R:A -> '0'2387R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2388R:C -> '0'2389R:U: adjacent_5p upward } 0 9 {'0'2389R:U -> '0'2388R:C: adjacent_3p downward } 0 10 {'0'2388R:C -> '0'2400R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2400R:G -> '0'2388R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2389R:U -> '0'2399R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {'0'2399R:G -> '0'2389R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {'0'2399R:G -> '0'2400R:G: adjacent_5p upward } 0 15 {'0'2400R:G -> '0'2399R:G: adjacent_3p downward } 0 16 {'0'2400R:G -> '0'2401R:A: adjacent_5p upward } 0 17 {'0'2401R:A -> '0'2400R:G: adjacent_3p downward } 0 18 {'0'2401R:A -> '0'2402R:A: adjacent_5p upward } 0 19 {'0'2402R:A -> '0'2401R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2387R:U 0 1 '0'2388R:C 0 2 '0'2389R:U 0 3 '0'2390R:U 0 4 '0'2398R:A 0 5 '0'2399R:G 0 6 '0'2400R:G 0 7 '0'2401R:A 0 [Edges] 0 {'0'2387R:U -> '0'2388R:C: adjacent_5p upward } 0 1 {'0'2388R:C -> '0'2387R:U: adjacent_3p downward } 0 2 {'0'2387R:U -> '0'2401R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2401R:A -> '0'2387R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2388R:C -> '0'2389R:U: adjacent_5p upward } 0 5 {'0'2389R:U -> '0'2388R:C: adjacent_3p downward } 0 6 {'0'2388R:C -> '0'2400R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2400R:G -> '0'2388R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2389R:U -> '0'2390R:U: adjacent_5p upward } 0 9 {'0'2390R:U -> '0'2389R:U: adjacent_3p downward } 0 10 {'0'2389R:U -> '0'2399R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {'0'2399R:G -> '0'2389R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {'0'2390R:U -> '0'2398R:A: pairing antiparallel trans one_hbond 45 Ss/Hw } 0 13 {'0'2398R:A -> '0'2390R:U: pairing antiparallel trans one_hbond 45 Hw/Ss } 0 14 {'0'2398R:A -> '0'2399R:G: adjacent_5p upward } 0 15 {'0'2399R:G -> '0'2398R:A: adjacent_3p downward } 0 16 {'0'2399R:G -> '0'2400R:G: adjacent_5p upward } 0 17 {'0'2400R:G -> '0'2399R:G: adjacent_3p downward } 0 18 {'0'2400R:G -> '0'2401R:A: adjacent_5p upward } 0 19 {'0'2401R:A -> '0'2400R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2388R:C 0 1 '0'2389R:U 0 2 '0'2390R:U 0 3 '0'2391R:C 0 4 '0'2397R:G 0 5 '0'2398R:A 0 6 '0'2399R:G 0 7 '0'2400R:G 0 [Edges] 0 {'0'2388R:C -> '0'2389R:U: adjacent_5p upward } 0 1 {'0'2389R:U -> '0'2388R:C: adjacent_3p downward } 0 2 {'0'2388R:C -> '0'2400R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2400R:G -> '0'2388R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2389R:U -> '0'2390R:U: adjacent_5p upward } 0 5 {'0'2390R:U -> '0'2389R:U: adjacent_3p downward } 0 6 {'0'2389R:U -> '0'2399R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'2399R:G -> '0'2389R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'2390R:U -> '0'2391R:C: adjacent_5p inward } 0 9 {'0'2391R:C -> '0'2390R:U: adjacent_3p inward } 0 10 {'0'2390R:U -> '0'2398R:A: pairing antiparallel trans one_hbond 45 Ss/Hw } 0 11 {'0'2398R:A -> '0'2390R:U: pairing antiparallel trans one_hbond 45 Hw/Ss } 0 12 {'0'2391R:C -> '0'2397R:G: pairing parallel trans Hh/Hh } 0 13 {'0'2397R:G -> '0'2391R:C: pairing parallel trans Hh/Hh } 0 14 {'0'2397R:G -> '0'2398R:A: adjacent_5p upward } 0 15 {'0'2398R:A -> '0'2397R:G: adjacent_3p downward } 0 16 {'0'2398R:A -> '0'2399R:G: adjacent_5p upward } 0 17 {'0'2399R:G -> '0'2398R:A: adjacent_3p downward } 0 18 {'0'2399R:G -> '0'2400R:G: adjacent_5p upward } 0 19 {'0'2400R:G -> '0'2399R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2409R:C 0 1 '0'2410R:G 0 2 '0'2411R:C 0 3 '0'2412R:G 0 4 '0'2415R:A 0 5 '0'2416R:G 0 6 '0'2417R:C 0 7 '0'2418R:G 0 [Edges] 0 {'0'2409R:C -> '0'2410R:G: adjacent_5p } 0 1 {'0'2410R:G -> '0'2409R:C: adjacent_3p } 0 2 {'0'2409R:C -> '0'2418R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2418R:G -> '0'2409R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2410R:G -> '0'2411R:C: adjacent_5p upward } 0 5 {'0'2411R:C -> '0'2410R:G: adjacent_3p downward } 0 6 {'0'2410R:G -> '0'2417R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2417R:C -> '0'2410R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2410R:G -> '0'2418R:G: outward } 0 9 {'0'2418R:G -> '0'2410R:G: outward } 0 10 {'0'2411R:C -> '0'2412R:G: adjacent_5p upward } 0 11 {'0'2412R:G -> '0'2411R:C: adjacent_3p downward } 0 12 {'0'2411R:C -> '0'2416R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2416R:G -> '0'2411R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2412R:G -> '0'2415R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 15 {'0'2415R:A -> '0'2412R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 16 {'0'2412R:G -> '0'2416R:G: outward } 0 17 {'0'2416R:G -> '0'2412R:G: outward } 0 18 {'0'2415R:A -> '0'2416R:G: adjacent_5p } 0 19 {'0'2416R:G -> '0'2415R:A: adjacent_3p } 0 20 {'0'2416R:G -> '0'2417R:C: adjacent_5p upward } 0 21 {'0'2417R:C -> '0'2416R:G: adjacent_3p downward } 0 22 {'0'2417R:C -> '0'2418R:G: adjacent_5p upward } 0 23 {'0'2418R:G -> '0'2417R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'2432R:C 0 1 '0'2433R:A 0 2 '0'2434R:A 0 3 '0'2435R:U 0 4 '0'2456R:A 0 5 '0'2457R:U 0 6 '0'2458R:U 0 7 '0'2459R:G 0 [Edges] 0 {'0'2432R:C -> '0'2433R:A: adjacent_5p } 0 1 {'0'2433R:A -> '0'2432R:C: adjacent_3p } 0 2 {'0'2432R:C -> '0'2459R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2459R:G -> '0'2432R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2433R:A -> '0'2434R:A: adjacent_5p upward } 0 5 {'0'2434R:A -> '0'2433R:A: adjacent_3p downward } 0 6 {'0'2433R:A -> '0'2458R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2458R:U -> '0'2433R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2433R:A -> '0'2459R:G: outward } 0 9 {'0'2459R:G -> '0'2433R:A: outward } 0 10 {'0'2434R:A -> '0'2435R:U: adjacent_5p upward } 0 11 {'0'2435R:U -> '0'2434R:A: adjacent_3p downward } 0 12 {'0'2434R:A -> '0'2457R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2457R:U -> '0'2434R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2435R:U -> '0'2456R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2456R:A -> '0'2435R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2456R:A -> '0'2457R:U: adjacent_5p upward } 0 17 {'0'2457R:U -> '0'2456R:A: adjacent_3p downward } 0 18 {'0'2457R:U -> '0'2458R:U: adjacent_5p upward } 0 19 {'0'2458R:U -> '0'2457R:U: adjacent_3p downward } 0 20 {'0'2458R:U -> '0'2459R:G: adjacent_5p upward } 0 21 {'0'2459R:G -> '0'2458R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2433R:A 0 1 '0'2434R:A 0 2 '0'2435R:U 0 3 '0'2436R:U 0 4 '0'2455R:A 0 5 '0'2456R:A 0 6 '0'2457R:U 0 7 '0'2458R:U 0 [Edges] 0 {'0'2433R:A -> '0'2434R:A: adjacent_5p upward } 0 1 {'0'2434R:A -> '0'2433R:A: adjacent_3p downward } 0 2 {'0'2433R:A -> '0'2458R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2458R:U -> '0'2433R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2434R:A -> '0'2435R:U: adjacent_5p upward } 0 5 {'0'2435R:U -> '0'2434R:A: adjacent_3p downward } 0 6 {'0'2434R:A -> '0'2457R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2457R:U -> '0'2434R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2435R:U -> '0'2436R:U: adjacent_5p } 0 9 {'0'2436R:U -> '0'2435R:U: adjacent_3p } 0 10 {'0'2435R:U -> '0'2456R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2456R:A -> '0'2435R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2436R:U -> '0'2455R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2455R:A -> '0'2436R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2455R:A -> '0'2456R:A: adjacent_5p upward } 0 15 {'0'2456R:A -> '0'2455R:A: adjacent_3p downward } 0 16 {'0'2456R:A -> '0'2457R:U: adjacent_5p upward } 0 17 {'0'2457R:U -> '0'2456R:A: adjacent_3p downward } 0 18 {'0'2457R:U -> '0'2458R:U: adjacent_5p upward } 0 19 {'0'2458R:U -> '0'2457R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2438R:G 0 1 '0'2439R:C 0 2 '0'2440R:C 0 3 '0'2441R:U 0 4 '0'2451R:G 0 5 '0'2452R:G 0 6 '0'2453R:G 0 7 '0'2454R:C 0 [Edges] 0 {'0'2438R:G -> '0'2439R:C: adjacent_5p upward } 0 1 {'0'2439R:C -> '0'2438R:G: adjacent_3p downward } 0 2 {'0'2438R:G -> '0'2454R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2454R:C -> '0'2438R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2439R:C -> '0'2440R:C: adjacent_5p } 0 5 {'0'2440R:C -> '0'2439R:C: adjacent_3p } 0 6 {'0'2439R:C -> '0'2453R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2453R:G -> '0'2439R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2440R:C -> '0'2441R:U: adjacent_5p upward } 0 9 {'0'2441R:U -> '0'2440R:C: adjacent_3p downward } 0 10 {'0'2440R:C -> '0'2452R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2452R:G -> '0'2440R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2440R:C -> '0'2453R:G: outward } 0 13 {'0'2453R:G -> '0'2440R:C: outward } 0 14 {'0'2441R:U -> '0'2451R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {'0'2451R:G -> '0'2441R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {'0'2451R:G -> '0'2452R:G: adjacent_5p upward } 0 17 {'0'2452R:G -> '0'2451R:G: adjacent_3p downward } 0 18 {'0'2452R:G -> '0'2453R:G: adjacent_5p upward } 0 19 {'0'2453R:G -> '0'2452R:G: adjacent_3p downward } 0 20 {'0'2453R:G -> '0'2454R:C: adjacent_5p upward } 0 21 {'0'2454R:C -> '0'2453R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2439R:C 0 1 '0'2440R:C 0 2 '0'2441R:U 0 3 '0'2442R:G 0 4 '0'2450R:C 0 5 '0'2451R:G 0 6 '0'2452R:G 0 7 '0'2453R:G 0 [Edges] 0 {'0'2439R:C -> '0'2440R:C: adjacent_5p } 0 1 {'0'2440R:C -> '0'2439R:C: adjacent_3p } 0 2 {'0'2439R:C -> '0'2453R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2453R:G -> '0'2439R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2440R:C -> '0'2441R:U: adjacent_5p upward } 0 5 {'0'2441R:U -> '0'2440R:C: adjacent_3p downward } 0 6 {'0'2440R:C -> '0'2452R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2452R:G -> '0'2440R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2440R:C -> '0'2453R:G: outward } 0 9 {'0'2453R:G -> '0'2440R:C: outward } 0 10 {'0'2441R:U -> '0'2442R:G: adjacent_5p } 0 11 {'0'2442R:G -> '0'2441R:U: adjacent_3p } 0 12 {'0'2441R:U -> '0'2451R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {'0'2451R:G -> '0'2441R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {'0'2442R:G -> '0'2450R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2450R:C -> '0'2442R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2442R:G -> '0'2451R:G: outward } 0 17 {'0'2451R:G -> '0'2442R:G: outward } 0 18 {'0'2450R:C -> '0'2451R:G: adjacent_5p } 0 19 {'0'2451R:G -> '0'2450R:C: adjacent_3p } 0 20 {'0'2451R:G -> '0'2452R:G: adjacent_5p upward } 0 21 {'0'2452R:G -> '0'2451R:G: adjacent_3p downward } 0 22 {'0'2452R:G -> '0'2453R:G: adjacent_5p upward } 0 23 {'0'2453R:G -> '0'2452R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'2490R:A 0 1 '0'2491R:G 0 2 '0'2492R:U 0 3 '0'2493R:C 0 4 '0'2528R:U 0 5 '0'2529R:G 0 6 '0'2530R:C 0 7 '0'2531R:U 0 [Edges] 0 {'0'2490R:A -> '0'2491R:G: adjacent_5p upward } 0 1 {'0'2491R:G -> '0'2490R:A: adjacent_3p downward } 0 2 {'0'2490R:A -> '0'2531R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2531R:U -> '0'2490R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2491R:G -> '0'2492R:U: adjacent_5p upward } 0 5 {'0'2492R:U -> '0'2491R:G: adjacent_3p downward } 0 6 {'0'2491R:G -> '0'2530R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2530R:C -> '0'2491R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2492R:U -> '0'2493R:C: adjacent_5p inward } 0 9 {'0'2493R:C -> '0'2492R:U: adjacent_3p inward } 0 10 {'0'2492R:U -> '0'2529R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {'0'2529R:G -> '0'2492R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {'0'2493R:C -> '0'2528R:U: pairing parallel cis one_hbond Hh/Wh } 0 13 {'0'2528R:U -> '0'2493R:C: pairing parallel cis one_hbond Wh/Hh } 0 14 {'0'2528R:U -> '0'2529R:G: adjacent_5p } 0 15 {'0'2529R:G -> '0'2528R:U: adjacent_3p } 0 16 {'0'2529R:G -> '0'2530R:C: adjacent_5p upward } 0 17 {'0'2530R:C -> '0'2529R:G: adjacent_3p downward } 0 18 {'0'2530R:C -> '0'2531R:U: adjacent_5p upward } 0 19 {'0'2531R:U -> '0'2530R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2495R:U 0 1 '0'2496R:C 0 2 '0'2497R:A 0 3 '0'2498R:C 0 4 '0'2522R:G 0 5 '0'2523R:U 0 6 '0'2524R:G 0 7 '0'2525R:G 0 [Edges] 0 {'0'2495R:U -> '0'2496R:C: adjacent_5p upward } 0 1 {'0'2496R:C -> '0'2495R:U: adjacent_3p downward } 0 2 {'0'2495R:U -> '0'2525R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 3 {'0'2525R:G -> '0'2495R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 4 {'0'2496R:C -> '0'2497R:A: adjacent_5p upward } 0 5 {'0'2497R:A -> '0'2496R:C: adjacent_3p downward } 0 6 {'0'2496R:C -> '0'2524R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2524R:G -> '0'2496R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2497R:A -> '0'2498R:C: adjacent_5p upward } 0 9 {'0'2498R:C -> '0'2497R:A: adjacent_3p downward } 0 10 {'0'2497R:A -> '0'2523R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2523R:U -> '0'2497R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2497R:A -> '0'2524R:G: outward } 0 13 {'0'2524R:G -> '0'2497R:A: outward } 0 14 {'0'2498R:C -> '0'2522R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2522R:G -> '0'2498R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2522R:G -> '0'2523R:U: adjacent_5p upward } 0 17 {'0'2523R:U -> '0'2522R:G: adjacent_3p downward } 0 18 {'0'2523R:U -> '0'2524R:G: adjacent_5p } 0 19 {'0'2524R:G -> '0'2523R:U: adjacent_3p } 0 20 {'0'2524R:G -> '0'2525R:G: adjacent_5p upward } 0 21 {'0'2525R:G -> '0'2524R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2496R:C 0 1 '0'2497R:A 0 2 '0'2498R:C 0 3 '0'2499R:U 0 4 '0'2521R:A 0 5 '0'2522R:G 0 6 '0'2523R:U 0 7 '0'2524R:G 0 [Edges] 0 {'0'2496R:C -> '0'2497R:A: adjacent_5p upward } 0 1 {'0'2497R:A -> '0'2496R:C: adjacent_3p downward } 0 2 {'0'2496R:C -> '0'2524R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2524R:G -> '0'2496R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2497R:A -> '0'2498R:C: adjacent_5p upward } 0 5 {'0'2498R:C -> '0'2497R:A: adjacent_3p downward } 0 6 {'0'2497R:A -> '0'2523R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2523R:U -> '0'2497R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2497R:A -> '0'2524R:G: outward } 0 9 {'0'2524R:G -> '0'2497R:A: outward } 0 10 {'0'2498R:C -> '0'2499R:U: adjacent_5p } 0 11 {'0'2499R:U -> '0'2498R:C: adjacent_3p } 0 12 {'0'2498R:C -> '0'2522R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2522R:G -> '0'2498R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2499R:U -> '0'2521R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2521R:A -> '0'2499R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2521R:A -> '0'2522R:G: adjacent_5p upward } 0 17 {'0'2522R:G -> '0'2521R:A: adjacent_3p downward } 0 18 {'0'2522R:G -> '0'2523R:U: adjacent_5p upward } 0 19 {'0'2523R:U -> '0'2522R:G: adjacent_3p downward } 0 20 {'0'2523R:U -> '0'2524R:G: adjacent_5p } 0 21 {'0'2524R:G -> '0'2523R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2497R:A 0 1 '0'2498R:C 0 2 '0'2499R:U 0 3 '0'2500R:C 0 4 '0'2520R:G 0 5 '0'2521R:A 0 6 '0'2522R:G 0 7 '0'2523R:U 0 [Edges] 0 {'0'2497R:A -> '0'2498R:C: adjacent_5p upward } 0 1 {'0'2498R:C -> '0'2497R:A: adjacent_3p downward } 0 2 {'0'2497R:A -> '0'2523R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2523R:U -> '0'2497R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2498R:C -> '0'2499R:U: adjacent_5p } 0 5 {'0'2499R:U -> '0'2498R:C: adjacent_3p } 0 6 {'0'2498R:C -> '0'2522R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2522R:G -> '0'2498R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2499R:U -> '0'2500R:C: adjacent_5p } 0 9 {'0'2500R:C -> '0'2499R:U: adjacent_3p } 0 10 {'0'2499R:U -> '0'2521R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2521R:A -> '0'2499R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2500R:C -> '0'2520R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2520R:G -> '0'2500R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2520R:G -> '0'2521R:A: adjacent_5p upward } 0 15 {'0'2521R:A -> '0'2520R:G: adjacent_3p downward } 0 16 {'0'2521R:A -> '0'2522R:G: adjacent_5p upward } 0 17 {'0'2522R:G -> '0'2521R:A: adjacent_3p downward } 0 18 {'0'2522R:G -> '0'2523R:U: adjacent_5p upward } 0 19 {'0'2523R:U -> '0'2522R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2498R:C 0 1 '0'2499R:U 0 2 '0'2500R:C 0 3 '0'2501R:G 0 4 '0'2519R:C 0 5 '0'2520R:G 0 6 '0'2521R:A 0 7 '0'2522R:G 0 [Edges] 0 {'0'2498R:C -> '0'2499R:U: adjacent_5p } 0 1 {'0'2499R:U -> '0'2498R:C: adjacent_3p } 0 2 {'0'2498R:C -> '0'2522R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2522R:G -> '0'2498R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2499R:U -> '0'2500R:C: adjacent_5p } 0 5 {'0'2500R:C -> '0'2499R:U: adjacent_3p } 0 6 {'0'2499R:U -> '0'2521R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2521R:A -> '0'2499R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2500R:C -> '0'2501R:G: adjacent_5p } 0 9 {'0'2501R:G -> '0'2500R:C: adjacent_3p } 0 10 {'0'2500R:C -> '0'2520R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2520R:G -> '0'2500R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2501R:G -> '0'2519R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2519R:C -> '0'2501R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2501R:G -> '0'2520R:G: outward } 0 15 {'0'2520R:G -> '0'2501R:G: outward } 0 16 {'0'2519R:C -> '0'2520R:G: adjacent_5p upward } 0 17 {'0'2520R:G -> '0'2519R:C: adjacent_3p downward } 0 18 {'0'2520R:G -> '0'2521R:A: adjacent_5p upward } 0 19 {'0'2521R:A -> '0'2520R:G: adjacent_3p downward } 0 20 {'0'2521R:A -> '0'2522R:G: adjacent_5p upward } 0 21 {'0'2522R:G -> '0'2521R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2499R:U 0 1 '0'2500R:C 0 2 '0'2501R:G 0 3 '0'2502R:C 0 4 '0'2518R:C 0 5 '0'2519R:C 0 6 '0'2520R:G 0 7 '0'2521R:A 0 [Edges] 0 {'0'2499R:U -> '0'2500R:C: adjacent_5p } 0 1 {'0'2500R:C -> '0'2499R:U: adjacent_3p } 0 2 {'0'2499R:U -> '0'2521R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2521R:A -> '0'2499R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2500R:C -> '0'2501R:G: adjacent_5p } 0 5 {'0'2501R:G -> '0'2500R:C: adjacent_3p } 0 6 {'0'2500R:C -> '0'2520R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2520R:G -> '0'2500R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2501R:G -> '0'2502R:C: adjacent_5p upward } 0 9 {'0'2502R:C -> '0'2501R:G: adjacent_3p downward } 0 10 {'0'2501R:G -> '0'2519R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2519R:C -> '0'2501R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2501R:G -> '0'2520R:G: outward } 0 13 {'0'2520R:G -> '0'2501R:G: outward } 0 14 {'0'2502R:C -> '0'2518R:C: pairing antiparallel cis one_hbond 137 Ww/Wh } 0 15 {'0'2518R:C -> '0'2502R:C: pairing antiparallel cis one_hbond 137 Wh/Ww } 0 16 {'0'2518R:C -> '0'2519R:C: adjacent_5p upward } 0 17 {'0'2519R:C -> '0'2518R:C: adjacent_3p downward } 0 18 {'0'2519R:C -> '0'2520R:G: adjacent_5p upward } 0 19 {'0'2520R:G -> '0'2519R:C: adjacent_3p downward } 0 20 {'0'2520R:G -> '0'2521R:A: adjacent_5p upward } 0 21 {'0'2521R:A -> '0'2520R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2500R:C 0 1 '0'2501R:G 0 2 '0'2502R:C 0 3 '0'2503R:A 0 4 '0'2517R:A 0 5 '0'2518R:C 0 6 '0'2519R:C 0 7 '0'2520R:G 0 [Edges] 0 {'0'2500R:C -> '0'2501R:G: adjacent_5p } 0 1 {'0'2501R:G -> '0'2500R:C: adjacent_3p } 0 2 {'0'2500R:C -> '0'2520R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2520R:G -> '0'2500R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2501R:G -> '0'2502R:C: adjacent_5p upward } 0 5 {'0'2502R:C -> '0'2501R:G: adjacent_3p downward } 0 6 {'0'2501R:G -> '0'2519R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2519R:C -> '0'2501R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2501R:G -> '0'2520R:G: outward } 0 9 {'0'2520R:G -> '0'2501R:G: outward } 0 10 {'0'2502R:C -> '0'2503R:A: adjacent_5p upward } 0 11 {'0'2503R:A -> '0'2502R:C: adjacent_3p downward } 0 12 {'0'2502R:C -> '0'2518R:C: pairing antiparallel cis one_hbond 137 Ww/Wh } 0 13 {'0'2518R:C -> '0'2502R:C: pairing antiparallel cis one_hbond 137 Wh/Ww } 0 14 {'0'2503R:A -> '0'2517R:A: pairing antiparallel trans 41 Ss/Hh } 0 15 {'0'2517R:A -> '0'2503R:A: pairing antiparallel trans 41 Hh/Ss } 0 16 {'0'2517R:A -> '0'2518R:C: adjacent_5p upward } 0 17 {'0'2518R:C -> '0'2517R:A: adjacent_3p downward } 0 18 {'0'2518R:C -> '0'2519R:C: adjacent_5p upward } 0 19 {'0'2519R:C -> '0'2518R:C: adjacent_3p downward } 0 20 {'0'2519R:C -> '0'2520R:G: adjacent_5p upward } 0 21 {'0'2520R:G -> '0'2519R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2501R:G 0 1 '0'2502R:C 0 2 '0'2503R:A 0 3 '0'2504R:A 0 4 '0'2516R:G 0 5 '0'2517R:A 0 6 '0'2518R:C 0 7 '0'2519R:C 0 [Edges] 0 {'0'2501R:G -> '0'2502R:C: adjacent_5p upward } 0 1 {'0'2502R:C -> '0'2501R:G: adjacent_3p downward } 0 2 {'0'2501R:G -> '0'2519R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2519R:C -> '0'2501R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2502R:C -> '0'2503R:A: adjacent_5p upward } 0 5 {'0'2503R:A -> '0'2502R:C: adjacent_3p downward } 0 6 {'0'2502R:C -> '0'2518R:C: pairing antiparallel cis one_hbond 137 Ww/Wh } 0 7 {'0'2518R:C -> '0'2502R:C: pairing antiparallel cis one_hbond 137 Wh/Ww } 0 8 {'0'2503R:A -> '0'2504R:A: adjacent_5p } 0 9 {'0'2504R:A -> '0'2503R:A: adjacent_3p } 0 10 {'0'2503R:A -> '0'2516R:G: inward } 0 11 {'0'2516R:G -> '0'2503R:A: inward } 0 12 {'0'2503R:A -> '0'2517R:A: pairing antiparallel trans 41 Ss/Hh } 0 13 {'0'2517R:A -> '0'2503R:A: pairing antiparallel trans 41 Hh/Ss } 0 14 {'0'2504R:A -> '0'2516R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {'0'2516R:G -> '0'2504R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {'0'2504R:A -> '0'2517R:A: outward } 0 17 {'0'2517R:A -> '0'2504R:A: outward } 0 18 {'0'2516R:G -> '0'2517R:A: adjacent_5p } 0 19 {'0'2517R:A -> '0'2516R:G: adjacent_3p } 0 20 {'0'2517R:A -> '0'2518R:C: adjacent_5p upward } 0 21 {'0'2518R:C -> '0'2517R:A: adjacent_3p downward } 0 22 {'0'2518R:C -> '0'2519R:C: adjacent_5p upward } 0 23 {'0'2519R:C -> '0'2518R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 12 . . 3 . . 9 . 14 16 . . 4 . . 11 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 '0'2502R:C 0 1 '0'2503R:A 0 2 '0'2504R:A 0 3 '0'2505R:G 0 4 '0'2515R:C 0 5 '0'2516R:G 0 6 '0'2517R:A 0 7 '0'2518R:C 0 [Edges] 0 {'0'2502R:C -> '0'2503R:A: adjacent_5p upward } 0 1 {'0'2503R:A -> '0'2502R:C: adjacent_3p downward } 0 2 {'0'2502R:C -> '0'2518R:C: pairing antiparallel cis one_hbond 137 Ww/Wh } 0 3 {'0'2518R:C -> '0'2502R:C: pairing antiparallel cis one_hbond 137 Wh/Ww } 0 4 {'0'2503R:A -> '0'2504R:A: adjacent_5p } 0 5 {'0'2504R:A -> '0'2503R:A: adjacent_3p } 0 6 {'0'2503R:A -> '0'2516R:G: inward } 0 7 {'0'2516R:G -> '0'2503R:A: inward } 0 8 {'0'2503R:A -> '0'2517R:A: pairing antiparallel trans 41 Ss/Hh } 0 9 {'0'2517R:A -> '0'2503R:A: pairing antiparallel trans 41 Hh/Ss } 0 10 {'0'2504R:A -> '0'2505R:G: adjacent_5p upward } 0 11 {'0'2505R:G -> '0'2504R:A: adjacent_3p downward } 0 12 {'0'2504R:A -> '0'2516R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {'0'2516R:G -> '0'2504R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {'0'2504R:A -> '0'2517R:A: outward } 0 15 {'0'2517R:A -> '0'2504R:A: outward } 0 16 {'0'2505R:G -> '0'2515R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {'0'2515R:C -> '0'2505R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {'0'2515R:C -> '0'2516R:G: adjacent_5p upward } 0 19 {'0'2516R:G -> '0'2515R:C: adjacent_3p downward } 0 20 {'0'2516R:G -> '0'2517R:A: adjacent_5p } 0 21 {'0'2517R:A -> '0'2516R:G: adjacent_3p } 0 22 {'0'2517R:A -> '0'2518R:C: adjacent_5p upward } 0 23 {'0'2518R:C -> '0'2517R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . 7 13 . 19 . 20 . 6 . 9 15 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 '0'2503R:A 0 1 '0'2504R:A 0 2 '0'2505R:G 0 3 '0'2506R:A 0 4 '0'2514R:U 0 5 '0'2515R:C 0 6 '0'2516R:G 0 7 '0'2517R:A 0 [Edges] 0 {'0'2503R:A -> '0'2504R:A: adjacent_5p } 0 1 {'0'2504R:A -> '0'2503R:A: adjacent_3p } 0 2 {'0'2503R:A -> '0'2516R:G: inward } 0 3 {'0'2516R:G -> '0'2503R:A: inward } 0 4 {'0'2503R:A -> '0'2517R:A: pairing antiparallel trans 41 Ss/Hh } 0 5 {'0'2517R:A -> '0'2503R:A: pairing antiparallel trans 41 Hh/Ss } 0 6 {'0'2504R:A -> '0'2505R:G: adjacent_5p upward } 0 7 {'0'2505R:G -> '0'2504R:A: adjacent_3p downward } 0 8 {'0'2504R:A -> '0'2516R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {'0'2516R:G -> '0'2504R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {'0'2504R:A -> '0'2517R:A: outward } 0 11 {'0'2517R:A -> '0'2504R:A: outward } 0 12 {'0'2505R:G -> '0'2506R:A: adjacent_5p upward } 0 13 {'0'2506R:A -> '0'2505R:G: adjacent_3p downward } 0 14 {'0'2505R:G -> '0'2515R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2515R:C -> '0'2505R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2506R:A -> '0'2514R:U: pairing antiparallel cis XX Ww/Ww } 0 17 {'0'2514R:U -> '0'2506R:A: pairing antiparallel cis XX Ww/Ww } 0 18 {'0'2514R:U -> '0'2515R:C: adjacent_5p upward } 0 19 {'0'2515R:C -> '0'2514R:U: adjacent_3p downward } 0 20 {'0'2515R:C -> '0'2516R:G: adjacent_5p upward } 0 21 {'0'2516R:G -> '0'2515R:C: adjacent_3p downward } 0 22 {'0'2516R:G -> '0'2517R:A: adjacent_5p } 0 23 {'0'2517R:A -> '0'2516R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 18 . . 5 . . 15 . 19 . 20 . 6 3 9 . . . 21 . 22 7 5 11 . . . . 23 . [GraphModel] [Vertices] 0 '0'2504R:A 0 1 '0'2505R:G 0 2 '0'2506R:A 0 3 '0'2507R:G 0 4 '0'2513R:A 0 5 '0'2514R:U 0 6 '0'2515R:C 0 7 '0'2516R:G 0 [Edges] 0 {'0'2504R:A -> '0'2505R:G: adjacent_5p upward } 0 1 {'0'2505R:G -> '0'2504R:A: adjacent_3p downward } 0 2 {'0'2504R:A -> '0'2516R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'2516R:G -> '0'2504R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'2505R:G -> '0'2506R:A: adjacent_5p upward } 0 5 {'0'2506R:A -> '0'2505R:G: adjacent_3p downward } 0 6 {'0'2505R:G -> '0'2515R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2515R:C -> '0'2505R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2506R:A -> '0'2507R:G: adjacent_5p upward } 0 9 {'0'2507R:G -> '0'2506R:A: adjacent_3p downward } 0 10 {'0'2506R:A -> '0'2514R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2514R:U -> '0'2506R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2507R:G -> '0'2513R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {'0'2513R:A -> '0'2507R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {'0'2513R:A -> '0'2514R:U: adjacent_5p upward } 0 15 {'0'2514R:U -> '0'2513R:A: adjacent_3p downward } 0 16 {'0'2514R:U -> '0'2515R:C: adjacent_5p upward } 0 17 {'0'2515R:C -> '0'2514R:U: adjacent_3p downward } 0 18 {'0'2515R:C -> '0'2516R:G: adjacent_5p upward } 0 19 {'0'2516R:G -> '0'2515R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2548R:C 0 1 '0'2549R:C 0 2 '0'2550R:U 0 3 '0'2551R:C 0 4 '0'2603R:G 0 5 '0'2604R:A 0 6 '0'2605R:G 0 7 '0'2606R:G 0 [Edges] 0 {'0'2548R:C -> '0'2549R:C: adjacent_5p } 0 1 {'0'2549R:C -> '0'2548R:C: adjacent_3p } 0 2 {'0'2548R:C -> '0'2606R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2606R:G -> '0'2548R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2549R:C -> '0'2550R:U: adjacent_5p upward } 0 5 {'0'2550R:U -> '0'2549R:C: adjacent_3p downward } 0 6 {'0'2549R:C -> '0'2605R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2605R:G -> '0'2549R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2550R:U -> '0'2551R:C: adjacent_5p } 0 9 {'0'2551R:C -> '0'2550R:U: adjacent_3p } 0 10 {'0'2550R:U -> '0'2604R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2604R:A -> '0'2550R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2551R:C -> '0'2603R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2603R:G -> '0'2551R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2603R:G -> '0'2604R:A: adjacent_5p upward } 0 15 {'0'2604R:A -> '0'2603R:G: adjacent_3p downward } 0 16 {'0'2604R:A -> '0'2605R:G: adjacent_5p upward } 0 17 {'0'2605R:G -> '0'2604R:A: adjacent_3p downward } 0 18 {'0'2605R:G -> '0'2606R:G: adjacent_5p upward } 0 19 {'0'2606R:G -> '0'2605R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2549R:C 0 1 '0'2550R:U 0 2 '0'2551R:C 0 3 '0'2552R:C 0 4 '0'2602R:G 0 5 '0'2603R:G 0 6 '0'2604R:A 0 7 '0'2605R:G 0 [Edges] 0 {'0'2549R:C -> '0'2550R:U: adjacent_5p upward } 0 1 {'0'2550R:U -> '0'2549R:C: adjacent_3p downward } 0 2 {'0'2549R:C -> '0'2605R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2605R:G -> '0'2549R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2550R:U -> '0'2551R:C: adjacent_5p } 0 5 {'0'2551R:C -> '0'2550R:U: adjacent_3p } 0 6 {'0'2550R:U -> '0'2604R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2604R:A -> '0'2550R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2551R:C -> '0'2552R:C: adjacent_5p upward } 0 9 {'0'2552R:C -> '0'2551R:C: adjacent_3p downward } 0 10 {'0'2551R:C -> '0'2603R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2603R:G -> '0'2551R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2552R:C -> '0'2602R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2602R:G -> '0'2552R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2602R:G -> '0'2603R:G: adjacent_5p upward } 0 15 {'0'2603R:G -> '0'2602R:G: adjacent_3p downward } 0 16 {'0'2603R:G -> '0'2604R:A: adjacent_5p upward } 0 17 {'0'2604R:A -> '0'2603R:G: adjacent_3p downward } 0 18 {'0'2604R:A -> '0'2605R:G: adjacent_5p upward } 0 19 {'0'2605R:G -> '0'2604R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2558R:G 0 1 '0'2559R:C 0 2 '0'2560R:C 0 3 '0'2561R:C 0 4 '0'2572R:G 0 5 '0'2573R:G 0 6 '0'2574R:G 0 7 '0'2575R:C 0 [Edges] 0 {'0'2558R:G -> '0'2559R:C: adjacent_5p upward } 0 1 {'0'2559R:C -> '0'2558R:G: adjacent_3p downward } 0 2 {'0'2558R:G -> '0'2575R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2575R:C -> '0'2558R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2559R:C -> '0'2560R:C: adjacent_5p upward } 0 5 {'0'2560R:C -> '0'2559R:C: adjacent_3p downward } 0 6 {'0'2559R:C -> '0'2574R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2574R:G -> '0'2559R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2560R:C -> '0'2561R:C: adjacent_5p } 0 9 {'0'2561R:C -> '0'2560R:C: adjacent_3p } 0 10 {'0'2560R:C -> '0'2573R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2573R:G -> '0'2560R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2561R:C -> '0'2572R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2572R:G -> '0'2561R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2572R:G -> '0'2573R:G: adjacent_5p upward } 0 15 {'0'2573R:G -> '0'2572R:G: adjacent_3p downward } 0 16 {'0'2573R:G -> '0'2574R:G: adjacent_5p upward } 0 17 {'0'2574R:G -> '0'2573R:G: adjacent_3p downward } 0 18 {'0'2574R:G -> '0'2575R:C: adjacent_5p upward } 0 19 {'0'2575R:C -> '0'2574R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2559R:C 0 1 '0'2560R:C 0 2 '0'2561R:C 0 3 '0'2562R:G 0 4 '0'2571R:C 0 5 '0'2572R:G 0 6 '0'2573R:G 0 7 '0'2574R:G 0 [Edges] 0 {'0'2559R:C -> '0'2560R:C: adjacent_5p upward } 0 1 {'0'2560R:C -> '0'2559R:C: adjacent_3p downward } 0 2 {'0'2559R:C -> '0'2574R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2574R:G -> '0'2559R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2560R:C -> '0'2561R:C: adjacent_5p } 0 5 {'0'2561R:C -> '0'2560R:C: adjacent_3p } 0 6 {'0'2560R:C -> '0'2573R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2573R:G -> '0'2560R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2561R:C -> '0'2562R:G: adjacent_5p } 0 9 {'0'2562R:G -> '0'2561R:C: adjacent_3p } 0 10 {'0'2561R:C -> '0'2572R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2572R:G -> '0'2561R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2562R:G -> '0'2571R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2571R:C -> '0'2562R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2562R:G -> '0'2572R:G: outward } 0 15 {'0'2572R:G -> '0'2562R:G: outward } 0 16 {'0'2571R:C -> '0'2572R:G: adjacent_5p upward } 0 17 {'0'2572R:G -> '0'2571R:C: adjacent_3p downward } 0 18 {'0'2572R:G -> '0'2573R:G: adjacent_5p upward } 0 19 {'0'2573R:G -> '0'2572R:G: adjacent_3p downward } 0 20 {'0'2573R:G -> '0'2574R:G: adjacent_5p upward } 0 21 {'0'2574R:G -> '0'2573R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2560R:C 0 1 '0'2561R:C 0 2 '0'2562R:G 0 3 '0'2563R:U 0 4 '0'2570R:G 0 5 '0'2571R:C 0 6 '0'2572R:G 0 7 '0'2573R:G 0 [Edges] 0 {'0'2560R:C -> '0'2561R:C: adjacent_5p } 0 1 {'0'2561R:C -> '0'2560R:C: adjacent_3p } 0 2 {'0'2560R:C -> '0'2573R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2573R:G -> '0'2560R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2561R:C -> '0'2562R:G: adjacent_5p } 0 5 {'0'2562R:G -> '0'2561R:C: adjacent_3p } 0 6 {'0'2561R:C -> '0'2572R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2572R:G -> '0'2561R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2562R:G -> '0'2563R:U: adjacent_5p upward } 0 9 {'0'2563R:U -> '0'2562R:G: adjacent_3p downward } 0 10 {'0'2562R:G -> '0'2571R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2571R:C -> '0'2562R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2562R:G -> '0'2572R:G: outward } 0 13 {'0'2572R:G -> '0'2562R:G: outward } 0 14 {'0'2563R:U -> '0'2570R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {'0'2570R:G -> '0'2563R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {'0'2570R:G -> '0'2571R:C: adjacent_5p upward } 0 17 {'0'2571R:C -> '0'2570R:G: adjacent_3p downward } 0 18 {'0'2571R:C -> '0'2572R:G: adjacent_5p upward } 0 19 {'0'2572R:G -> '0'2571R:C: adjacent_3p downward } 0 20 {'0'2572R:G -> '0'2573R:G: adjacent_5p upward } 0 21 {'0'2573R:G -> '0'2572R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2582R:G 0 1 '0'2583R:A 0 2 '0'2584R:G 0 3 '0'2585R:G 0 4 '0'2593R:C 0 5 '0'2594R:C 0 6 '0'2595R:U 0 7 '0'2596R:A 0 [Edges] 0 {'0'2582R:G -> '0'2583R:A: adjacent_5p upward } 0 1 {'0'2583R:A -> '0'2582R:G: adjacent_3p downward } 0 2 {'0'2582R:G -> '0'2596R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {'0'2596R:A -> '0'2582R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {'0'2583R:A -> '0'2584R:G: adjacent_5p upward } 0 5 {'0'2584R:G -> '0'2583R:A: adjacent_3p downward } 0 6 {'0'2583R:A -> '0'2595R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2595R:U -> '0'2583R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2583R:A -> '0'2596R:A: outward } 0 9 {'0'2596R:A -> '0'2583R:A: outward } 0 10 {'0'2584R:G -> '0'2585R:G: adjacent_5p upward } 0 11 {'0'2585R:G -> '0'2584R:G: adjacent_3p downward } 0 12 {'0'2584R:G -> '0'2594R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2594R:C -> '0'2584R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2585R:G -> '0'2593R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2593R:C -> '0'2585R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2593R:C -> '0'2594R:C: adjacent_5p upward } 0 17 {'0'2594R:C -> '0'2593R:C: adjacent_3p downward } 0 18 {'0'2594R:C -> '0'2595R:U: adjacent_5p } 0 19 {'0'2595R:U -> '0'2594R:C: adjacent_3p } 0 20 {'0'2595R:U -> '0'2596R:A: adjacent_5p upward } 0 21 {'0'2596R:A -> '0'2595R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2583R:A 0 1 '0'2584R:G 0 2 '0'2585R:G 0 3 '0'2586R:U 0 4 '0'2592R:G 0 5 '0'2593R:C 0 6 '0'2594R:C 0 7 '0'2595R:U 0 [Edges] 0 {'0'2583R:A -> '0'2584R:G: adjacent_5p upward } 0 1 {'0'2584R:G -> '0'2583R:A: adjacent_3p downward } 0 2 {'0'2583R:A -> '0'2595R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2595R:U -> '0'2583R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2584R:G -> '0'2585R:G: adjacent_5p upward } 0 5 {'0'2585R:G -> '0'2584R:G: adjacent_3p downward } 0 6 {'0'2584R:G -> '0'2594R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2594R:C -> '0'2584R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2585R:G -> '0'2586R:U: adjacent_5p upward } 0 9 {'0'2586R:U -> '0'2585R:G: adjacent_3p downward } 0 10 {'0'2585R:G -> '0'2593R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2593R:C -> '0'2585R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2586R:U -> '0'2592R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 13 {'0'2592R:G -> '0'2586R:U: pairing antiparallel cis one_hbond Ww/Wh } 0 14 {'0'2592R:G -> '0'2593R:C: adjacent_5p upward } 0 15 {'0'2593R:C -> '0'2592R:G: adjacent_3p downward } 0 16 {'0'2593R:C -> '0'2594R:C: adjacent_5p upward } 0 17 {'0'2594R:C -> '0'2593R:C: adjacent_3p downward } 0 18 {'0'2594R:C -> '0'2595R:U: adjacent_5p } 0 19 {'0'2595R:U -> '0'2594R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2623R:G 0 1 '0'2624R:A 0 2 '0'2625R:C 0 3 '0'2626R:C 0 4 '0'2638R:G 0 5 '0'2639R:G 0 6 '0'2640R:U 0 7 '0'2641R:C 0 [Edges] 0 {'0'2623R:G -> '0'2624R:A: adjacent_5p upward } 0 1 {'0'2624R:A -> '0'2623R:G: adjacent_3p downward } 0 2 {'0'2623R:G -> '0'2641R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2641R:C -> '0'2623R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2624R:A -> '0'2625R:C: adjacent_5p upward } 0 5 {'0'2625R:C -> '0'2624R:A: adjacent_3p downward } 0 6 {'0'2624R:A -> '0'2640R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2640R:U -> '0'2624R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2625R:C -> '0'2626R:C: adjacent_5p upward } 0 9 {'0'2626R:C -> '0'2625R:C: adjacent_3p downward } 0 10 {'0'2625R:C -> '0'2639R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2639R:G -> '0'2625R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2626R:C -> '0'2638R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2638R:G -> '0'2626R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2638R:G -> '0'2639R:G: adjacent_5p upward } 0 15 {'0'2639R:G -> '0'2638R:G: adjacent_3p downward } 0 16 {'0'2639R:G -> '0'2640R:U: adjacent_5p upward } 0 17 {'0'2640R:U -> '0'2639R:G: adjacent_3p downward } 0 18 {'0'2640R:U -> '0'2641R:C: adjacent_5p } 0 19 {'0'2641R:C -> '0'2640R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2627R:G 0 1 '0'2628R:U 0 2 '0'2629R:C 0 3 '0'2630R:G 0 4 '0'2633R:A 0 5 '0'2634R:G 0 6 '0'2635R:A 0 7 '0'2636R:C 0 [Edges] 0 {'0'2627R:G -> '0'2628R:U: adjacent_5p upward } 0 1 {'0'2628R:U -> '0'2627R:G: adjacent_3p downward } 0 2 {'0'2627R:G -> '0'2636R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2636R:C -> '0'2627R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2628R:U -> '0'2629R:C: adjacent_5p upward } 0 5 {'0'2629R:C -> '0'2628R:U: adjacent_3p downward } 0 6 {'0'2628R:U -> '0'2635R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2635R:A -> '0'2628R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2629R:C -> '0'2630R:G: adjacent_5p upward } 0 9 {'0'2630R:G -> '0'2629R:C: adjacent_3p downward } 0 10 {'0'2629R:C -> '0'2634R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2634R:G -> '0'2629R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2630R:G -> '0'2633R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {'0'2633R:A -> '0'2630R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {'0'2630R:G -> '0'2634R:G: outward } 0 15 {'0'2634R:G -> '0'2630R:G: outward } 0 16 {'0'2633R:A -> '0'2634R:G: adjacent_5p } 0 17 {'0'2634R:G -> '0'2633R:A: adjacent_3p } 0 18 {'0'2634R:G -> '0'2635R:A: adjacent_5p upward } 0 19 {'0'2635R:A -> '0'2634R:G: adjacent_3p downward } 0 20 {'0'2635R:A -> '0'2636R:C: adjacent_5p upward } 0 21 {'0'2636R:C -> '0'2635R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2668R:G 0 1 '0'2669R:U 0 2 '0'2670R:G 0 3 '0'2671R:U 0 4 '0'2818R:A 0 5 '0'2819R:C 0 6 '0'2820R:A 0 7 '0'2821R:C 0 [Edges] 0 {'0'2668R:G -> '0'2669R:U: adjacent_5p upward } 0 1 {'0'2669R:U -> '0'2668R:G: adjacent_3p downward } 0 2 {'0'2668R:G -> '0'2821R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2821R:C -> '0'2668R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2669R:U -> '0'2670R:G: adjacent_5p upward } 0 5 {'0'2670R:G -> '0'2669R:U: adjacent_3p downward } 0 6 {'0'2669R:U -> '0'2820R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2820R:A -> '0'2669R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2670R:G -> '0'2671R:U: adjacent_5p upward } 0 9 {'0'2671R:U -> '0'2670R:G: adjacent_3p downward } 0 10 {'0'2670R:G -> '0'2819R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2819R:C -> '0'2670R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2670R:G -> '0'2820R:A: outward } 0 13 {'0'2820R:A -> '0'2670R:G: outward } 0 14 {'0'2671R:U -> '0'2818R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2818R:A -> '0'2671R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2818R:A -> '0'2819R:C: adjacent_5p upward } 0 17 {'0'2819R:C -> '0'2818R:A: adjacent_3p downward } 0 18 {'0'2819R:C -> '0'2820R:A: adjacent_5p upward } 0 19 {'0'2820R:A -> '0'2819R:C: adjacent_3p downward } 0 20 {'0'2820R:A -> '0'2821R:C: adjacent_5p upward } 0 21 {'0'2821R:C -> '0'2820R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2669R:U 0 1 '0'2670R:G 0 2 '0'2671R:U 0 3 '0'2672R:C 0 4 '0'2817R:G 0 5 '0'2818R:A 0 6 '0'2819R:C 0 7 '0'2820R:A 0 [Edges] 0 {'0'2669R:U -> '0'2670R:G: adjacent_5p upward } 0 1 {'0'2670R:G -> '0'2669R:U: adjacent_3p downward } 0 2 {'0'2669R:U -> '0'2820R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2820R:A -> '0'2669R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2670R:G -> '0'2671R:U: adjacent_5p upward } 0 5 {'0'2671R:U -> '0'2670R:G: adjacent_3p downward } 0 6 {'0'2670R:G -> '0'2819R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2819R:C -> '0'2670R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2670R:G -> '0'2820R:A: outward } 0 9 {'0'2820R:A -> '0'2670R:G: outward } 0 10 {'0'2671R:U -> '0'2672R:C: adjacent_5p upward } 0 11 {'0'2672R:C -> '0'2671R:U: adjacent_3p downward } 0 12 {'0'2671R:U -> '0'2818R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2818R:A -> '0'2671R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2672R:C -> '0'2817R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2817R:G -> '0'2672R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2817R:G -> '0'2818R:A: adjacent_5p upward } 0 17 {'0'2818R:A -> '0'2817R:G: adjacent_3p downward } 0 18 {'0'2818R:A -> '0'2819R:C: adjacent_5p upward } 0 19 {'0'2819R:C -> '0'2818R:A: adjacent_3p downward } 0 20 {'0'2819R:C -> '0'2820R:A: adjacent_5p upward } 0 21 {'0'2820R:A -> '0'2819R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2675R:A 0 1 '0'2676R:C 0 2 '0'2677R:A 0 3 '0'2678R:A 0 4 '0'2807R:U 0 5 '0'2808R:U 0 6 '0'2809R:G 0 7 '0'2810R:G 0 [Edges] 0 {'0'2675R:A -> '0'2676R:C: adjacent_5p upward } 0 1 {'0'2676R:C -> '0'2675R:A: adjacent_3p downward } 0 2 {'0'2675R:A -> '0'2810R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'2810R:G -> '0'2675R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'2676R:C -> '0'2677R:A: adjacent_5p } 0 5 {'0'2677R:A -> '0'2676R:C: adjacent_3p } 0 6 {'0'2676R:C -> '0'2809R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2809R:G -> '0'2676R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2677R:A -> '0'2678R:A: adjacent_5p upward } 0 9 {'0'2678R:A -> '0'2677R:A: adjacent_3p downward } 0 10 {'0'2677R:A -> '0'2808R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2808R:U -> '0'2677R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2677R:A -> '0'2809R:G: outward } 0 13 {'0'2809R:G -> '0'2677R:A: outward } 0 14 {'0'2678R:A -> '0'2807R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2807R:U -> '0'2678R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2807R:U -> '0'2808R:U: adjacent_5p upward } 0 17 {'0'2808R:U -> '0'2807R:U: adjacent_3p downward } 0 18 {'0'2808R:U -> '0'2809R:G: adjacent_5p upward } 0 19 {'0'2809R:G -> '0'2808R:U: adjacent_3p downward } 0 20 {'0'2809R:G -> '0'2810R:G: adjacent_5p upward } 0 21 {'0'2810R:G -> '0'2809R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2676R:C 0 1 '0'2677R:A 0 2 '0'2678R:A 0 3 '0'2679R:G 0 4 '0'2806R:C 0 5 '0'2807R:U 0 6 '0'2808R:U 0 7 '0'2809R:G 0 [Edges] 0 {'0'2676R:C -> '0'2677R:A: adjacent_5p } 0 1 {'0'2677R:A -> '0'2676R:C: adjacent_3p } 0 2 {'0'2676R:C -> '0'2809R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2809R:G -> '0'2676R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2677R:A -> '0'2678R:A: adjacent_5p upward } 0 5 {'0'2678R:A -> '0'2677R:A: adjacent_3p downward } 0 6 {'0'2677R:A -> '0'2808R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2808R:U -> '0'2677R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2677R:A -> '0'2809R:G: outward } 0 9 {'0'2809R:G -> '0'2677R:A: outward } 0 10 {'0'2678R:A -> '0'2679R:G: adjacent_5p upward } 0 11 {'0'2679R:G -> '0'2678R:A: adjacent_3p downward } 0 12 {'0'2678R:A -> '0'2807R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2807R:U -> '0'2678R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2679R:G -> '0'2806R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2806R:C -> '0'2679R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2806R:C -> '0'2807R:U: adjacent_5p upward } 0 17 {'0'2807R:U -> '0'2806R:C: adjacent_3p downward } 0 18 {'0'2807R:U -> '0'2808R:U: adjacent_5p upward } 0 19 {'0'2808R:U -> '0'2807R:U: adjacent_3p downward } 0 20 {'0'2808R:U -> '0'2809R:G: adjacent_5p upward } 0 21 {'0'2809R:G -> '0'2808R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2682R:C 0 1 '0'2683R:G 0 2 '0'2684R:A 0 3 '0'2685R:C 0 4 '0'2709R:G 0 5 '0'2710R:U 0 6 '0'2711R:U 0 7 '0'2712R:G 0 [Edges] 0 {'0'2682R:C -> '0'2683R:G: adjacent_5p } 0 1 {'0'2683R:G -> '0'2682R:C: adjacent_3p } 0 2 {'0'2682R:C -> '0'2712R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2712R:G -> '0'2682R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2683R:G -> '0'2684R:A: adjacent_5p upward } 0 5 {'0'2684R:A -> '0'2683R:G: adjacent_3p downward } 0 6 {'0'2683R:G -> '0'2711R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'2711R:U -> '0'2683R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'2683R:G -> '0'2712R:G: outward } 0 9 {'0'2712R:G -> '0'2683R:G: outward } 0 10 {'0'2684R:A -> '0'2685R:C: adjacent_5p upward } 0 11 {'0'2685R:C -> '0'2684R:A: adjacent_3p downward } 0 12 {'0'2684R:A -> '0'2710R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2710R:U -> '0'2684R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2685R:C -> '0'2709R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2709R:G -> '0'2685R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2709R:G -> '0'2710R:U: adjacent_5p upward } 0 17 {'0'2710R:U -> '0'2709R:G: adjacent_3p downward } 0 18 {'0'2710R:U -> '0'2711R:U: adjacent_5p upward } 0 19 {'0'2711R:U -> '0'2710R:U: adjacent_3p downward } 0 20 {'0'2711R:U -> '0'2712R:G: adjacent_5p upward } 0 21 {'0'2712R:G -> '0'2711R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2683R:G 0 1 '0'2684R:A 0 2 '0'2685R:C 0 3 '0'2686R:C 0 4 '0'2708R:G 0 5 '0'2709R:G 0 6 '0'2710R:U 0 7 '0'2711R:U 0 [Edges] 0 {'0'2683R:G -> '0'2684R:A: adjacent_5p upward } 0 1 {'0'2684R:A -> '0'2683R:G: adjacent_3p downward } 0 2 {'0'2683R:G -> '0'2711R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'2711R:U -> '0'2683R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'2684R:A -> '0'2685R:C: adjacent_5p upward } 0 5 {'0'2685R:C -> '0'2684R:A: adjacent_3p downward } 0 6 {'0'2684R:A -> '0'2710R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2710R:U -> '0'2684R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2685R:C -> '0'2686R:C: adjacent_5p } 0 9 {'0'2686R:C -> '0'2685R:C: adjacent_3p } 0 10 {'0'2685R:C -> '0'2709R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2709R:G -> '0'2685R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2686R:C -> '0'2708R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2708R:G -> '0'2686R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2708R:G -> '0'2709R:G: adjacent_5p upward } 0 15 {'0'2709R:G -> '0'2708R:G: adjacent_3p downward } 0 16 {'0'2709R:G -> '0'2710R:U: adjacent_5p upward } 0 17 {'0'2710R:U -> '0'2709R:G: adjacent_3p downward } 0 18 {'0'2710R:U -> '0'2711R:U: adjacent_5p upward } 0 19 {'0'2711R:U -> '0'2710R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2684R:A 0 1 '0'2685R:C 0 2 '0'2686R:C 0 3 '0'2687R:G 0 4 '0'2707R:C 0 5 '0'2708R:G 0 6 '0'2709R:G 0 7 '0'2710R:U 0 [Edges] 0 {'0'2684R:A -> '0'2685R:C: adjacent_5p upward } 0 1 {'0'2685R:C -> '0'2684R:A: adjacent_3p downward } 0 2 {'0'2684R:A -> '0'2710R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2710R:U -> '0'2684R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2685R:C -> '0'2686R:C: adjacent_5p } 0 5 {'0'2686R:C -> '0'2685R:C: adjacent_3p } 0 6 {'0'2685R:C -> '0'2709R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2709R:G -> '0'2685R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2686R:C -> '0'2687R:G: adjacent_5p upward } 0 9 {'0'2687R:G -> '0'2686R:C: adjacent_3p downward } 0 10 {'0'2686R:C -> '0'2708R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2708R:G -> '0'2686R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2687R:G -> '0'2707R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2707R:C -> '0'2687R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2687R:G -> '0'2708R:G: outward } 0 15 {'0'2708R:G -> '0'2687R:G: outward } 0 16 {'0'2707R:C -> '0'2708R:G: adjacent_5p } 0 17 {'0'2708R:G -> '0'2707R:C: adjacent_3p } 0 18 {'0'2708R:G -> '0'2709R:G: adjacent_5p upward } 0 19 {'0'2709R:G -> '0'2708R:G: adjacent_3p downward } 0 20 {'0'2709R:G -> '0'2710R:U: adjacent_5p upward } 0 21 {'0'2710R:U -> '0'2709R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2685R:C 0 1 '0'2686R:C 0 2 '0'2687R:G 0 3 '0'2688R:U 0 4 '0'2706R:A 0 5 '0'2707R:C 0 6 '0'2708R:G 0 7 '0'2709R:G 0 [Edges] 0 {'0'2685R:C -> '0'2686R:C: adjacent_5p } 0 1 {'0'2686R:C -> '0'2685R:C: adjacent_3p } 0 2 {'0'2685R:C -> '0'2709R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2709R:G -> '0'2685R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2686R:C -> '0'2687R:G: adjacent_5p upward } 0 5 {'0'2687R:G -> '0'2686R:C: adjacent_3p downward } 0 6 {'0'2686R:C -> '0'2708R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2708R:G -> '0'2686R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2687R:G -> '0'2688R:U: adjacent_5p upward } 0 9 {'0'2688R:U -> '0'2687R:G: adjacent_3p downward } 0 10 {'0'2687R:G -> '0'2707R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2707R:C -> '0'2687R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2687R:G -> '0'2708R:G: outward } 0 13 {'0'2708R:G -> '0'2687R:G: outward } 0 14 {'0'2688R:U -> '0'2706R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2706R:A -> '0'2688R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2706R:A -> '0'2707R:C: adjacent_5p upward } 0 17 {'0'2707R:C -> '0'2706R:A: adjacent_3p downward } 0 18 {'0'2707R:C -> '0'2708R:G: adjacent_5p } 0 19 {'0'2708R:G -> '0'2707R:C: adjacent_3p } 0 20 {'0'2708R:G -> '0'2709R:G: adjacent_5p upward } 0 21 {'0'2709R:G -> '0'2708R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2686R:C 0 1 '0'2687R:G 0 2 '0'2688R:U 0 3 '0'2689R:A 0 4 '0'2705R:U 0 5 '0'2706R:A 0 6 '0'2707R:C 0 7 '0'2708R:G 0 [Edges] 0 {'0'2686R:C -> '0'2687R:G: adjacent_5p upward } 0 1 {'0'2687R:G -> '0'2686R:C: adjacent_3p downward } 0 2 {'0'2686R:C -> '0'2708R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2708R:G -> '0'2686R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2687R:G -> '0'2688R:U: adjacent_5p upward } 0 5 {'0'2688R:U -> '0'2687R:G: adjacent_3p downward } 0 6 {'0'2687R:G -> '0'2707R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2707R:C -> '0'2687R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2687R:G -> '0'2708R:G: outward } 0 9 {'0'2708R:G -> '0'2687R:G: outward } 0 10 {'0'2688R:U -> '0'2689R:A: adjacent_5p upward } 0 11 {'0'2689R:A -> '0'2688R:U: adjacent_3p downward } 0 12 {'0'2688R:U -> '0'2706R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2706R:A -> '0'2688R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2689R:A -> '0'2705R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2705R:U -> '0'2689R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2689R:A -> '0'2706R:A: outward } 0 17 {'0'2706R:A -> '0'2689R:A: outward } 0 18 {'0'2705R:U -> '0'2706R:A: adjacent_5p upward } 0 19 {'0'2706R:A -> '0'2705R:U: adjacent_3p downward } 0 20 {'0'2706R:A -> '0'2707R:C: adjacent_5p upward } 0 21 {'0'2707R:C -> '0'2706R:A: adjacent_3p downward } 0 22 {'0'2707R:C -> '0'2708R:G: adjacent_5p } 0 23 {'0'2708R:G -> '0'2707R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'2687R:G 0 1 '0'2688R:U 0 2 '0'2689R:A 0 3 '0'2690R:U 0 4 '0'2704R:C 0 5 '0'2705R:U 0 6 '0'2706R:A 0 7 '0'2707R:C 0 [Edges] 0 {'0'2687R:G -> '0'2688R:U: adjacent_5p upward } 0 1 {'0'2688R:U -> '0'2687R:G: adjacent_3p downward } 0 2 {'0'2687R:G -> '0'2707R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2707R:C -> '0'2687R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2688R:U -> '0'2689R:A: adjacent_5p upward } 0 5 {'0'2689R:A -> '0'2688R:U: adjacent_3p downward } 0 6 {'0'2688R:U -> '0'2706R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2706R:A -> '0'2688R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2689R:A -> '0'2690R:U: adjacent_5p upward } 0 9 {'0'2690R:U -> '0'2689R:A: adjacent_3p downward } 0 10 {'0'2689R:A -> '0'2705R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2705R:U -> '0'2689R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2689R:A -> '0'2706R:A: outward } 0 13 {'0'2706R:A -> '0'2689R:A: outward } 0 14 {'0'2690R:U -> '0'2704R:C: pairing antiparallel trans one_hbond 97 Ss/Hw } 0 15 {'0'2704R:C -> '0'2690R:U: pairing antiparallel trans one_hbond 97 Hw/Ss } 0 16 {'0'2704R:C -> '0'2705R:U: adjacent_5p upward } 0 17 {'0'2705R:U -> '0'2704R:C: adjacent_3p downward } 0 18 {'0'2705R:U -> '0'2706R:A: adjacent_5p upward } 0 19 {'0'2706R:A -> '0'2705R:U: adjacent_3p downward } 0 20 {'0'2706R:A -> '0'2707R:C: adjacent_5p upward } 0 21 {'0'2707R:C -> '0'2706R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2688R:U 0 1 '0'2689R:A 0 2 '0'2690R:U 0 3 '0'2691R:A 0 4 '0'2703R:A 0 5 '0'2704R:C 0 6 '0'2705R:U 0 7 '0'2706R:A 0 [Edges] 0 {'0'2688R:U -> '0'2689R:A: adjacent_5p upward } 0 1 {'0'2689R:A -> '0'2688R:U: adjacent_3p downward } 0 2 {'0'2688R:U -> '0'2706R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2706R:A -> '0'2688R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2689R:A -> '0'2690R:U: adjacent_5p upward } 0 5 {'0'2690R:U -> '0'2689R:A: adjacent_3p downward } 0 6 {'0'2689R:A -> '0'2705R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2705R:U -> '0'2689R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2689R:A -> '0'2706R:A: outward } 0 9 {'0'2706R:A -> '0'2689R:A: outward } 0 10 {'0'2690R:U -> '0'2691R:A: adjacent_5p inward } 0 11 {'0'2691R:A -> '0'2690R:U: adjacent_3p inward } 0 12 {'0'2690R:U -> '0'2704R:C: pairing antiparallel trans one_hbond 97 Ss/Hw } 0 13 {'0'2704R:C -> '0'2690R:U: pairing antiparallel trans one_hbond 97 Hw/Ss } 0 14 {'0'2691R:A -> '0'2703R:A: pairing parallel trans II Hh/Hh } 0 15 {'0'2703R:A -> '0'2691R:A: pairing parallel trans II Hh/Hh } 0 16 {'0'2703R:A -> '0'2704R:C: adjacent_5p upward } 0 17 {'0'2704R:C -> '0'2703R:A: adjacent_3p downward } 0 18 {'0'2704R:C -> '0'2705R:U: adjacent_5p upward } 0 19 {'0'2705R:U -> '0'2704R:C: adjacent_3p downward } 0 20 {'0'2705R:U -> '0'2706R:A: adjacent_5p upward } 0 21 {'0'2706R:A -> '0'2705R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2693R:U 0 1 '0'2694R:A 0 2 '0'2695R:C 0 3 '0'2696R:G 0 4 '0'2699R:A 0 5 '0'2700R:G 0 6 '0'2701R:G 0 7 '0'2702R:A 0 [Edges] 0 {'0'2693R:U -> '0'2694R:A: adjacent_5p } 0 1 {'0'2694R:A -> '0'2693R:U: adjacent_3p } 0 2 {'0'2693R:U -> '0'2702R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {'0'2702R:A -> '0'2693R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {'0'2694R:A -> '0'2695R:C: adjacent_5p upward } 0 5 {'0'2695R:C -> '0'2694R:A: adjacent_3p downward } 0 6 {'0'2694R:A -> '0'2701R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {'0'2701R:G -> '0'2694R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {'0'2694R:A -> '0'2702R:A: outward } 0 9 {'0'2702R:A -> '0'2694R:A: outward } 0 10 {'0'2695R:C -> '0'2696R:G: adjacent_5p upward } 0 11 {'0'2696R:G -> '0'2695R:C: adjacent_3p downward } 0 12 {'0'2695R:C -> '0'2700R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2700R:G -> '0'2695R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2696R:G -> '0'2699R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 15 {'0'2699R:A -> '0'2696R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 16 {'0'2699R:A -> '0'2700R:G: adjacent_5p upward } 0 17 {'0'2700R:G -> '0'2699R:A: adjacent_3p downward } 0 18 {'0'2700R:G -> '0'2701R:G: adjacent_5p upward } 0 19 {'0'2701R:G -> '0'2700R:G: adjacent_3p downward } 0 20 {'0'2701R:G -> '0'2702R:A: adjacent_5p } 0 21 {'0'2702R:A -> '0'2701R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2713R:G 0 1 '0'2714R:U 0 2 '0'2715R:G 0 3 '0'2716R:G 0 4 '0'2764R:C 0 5 '0'2765R:C 0 6 '0'2766R:A 0 7 '0'2767R:C 0 [Edges] 0 {'0'2713R:G -> '0'2714R:U: adjacent_5p upward } 0 1 {'0'2714R:U -> '0'2713R:G: adjacent_3p downward } 0 2 {'0'2713R:G -> '0'2767R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2767R:C -> '0'2713R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2714R:U -> '0'2715R:G: adjacent_5p upward } 0 5 {'0'2715R:G -> '0'2714R:U: adjacent_3p downward } 0 6 {'0'2714R:U -> '0'2766R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2766R:A -> '0'2714R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2715R:G -> '0'2716R:G: adjacent_5p upward } 0 9 {'0'2716R:G -> '0'2715R:G: adjacent_3p downward } 0 10 {'0'2715R:G -> '0'2765R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2765R:C -> '0'2715R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2715R:G -> '0'2766R:A: outward } 0 13 {'0'2766R:A -> '0'2715R:G: outward } 0 14 {'0'2716R:G -> '0'2764R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2764R:C -> '0'2716R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2764R:C -> '0'2765R:C: adjacent_5p } 0 17 {'0'2765R:C -> '0'2764R:C: adjacent_3p } 0 18 {'0'2765R:C -> '0'2766R:A: adjacent_5p upward } 0 19 {'0'2766R:A -> '0'2765R:C: adjacent_3p downward } 0 20 {'0'2766R:A -> '0'2767R:C: adjacent_5p upward } 0 21 {'0'2767R:C -> '0'2766R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2714R:U 0 1 '0'2715R:G 0 2 '0'2716R:G 0 3 '0'2717R:C 0 4 '0'2763R:G 0 5 '0'2764R:C 0 6 '0'2765R:C 0 7 '0'2766R:A 0 [Edges] 0 {'0'2714R:U -> '0'2715R:G: adjacent_5p upward } 0 1 {'0'2715R:G -> '0'2714R:U: adjacent_3p downward } 0 2 {'0'2714R:U -> '0'2766R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2766R:A -> '0'2714R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2715R:G -> '0'2716R:G: adjacent_5p upward } 0 5 {'0'2716R:G -> '0'2715R:G: adjacent_3p downward } 0 6 {'0'2715R:G -> '0'2765R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2765R:C -> '0'2715R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2715R:G -> '0'2766R:A: outward } 0 9 {'0'2766R:A -> '0'2715R:G: outward } 0 10 {'0'2716R:G -> '0'2717R:C: adjacent_5p upward } 0 11 {'0'2717R:C -> '0'2716R:G: adjacent_3p downward } 0 12 {'0'2716R:G -> '0'2764R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2764R:C -> '0'2716R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2717R:C -> '0'2763R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2763R:G -> '0'2717R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2763R:G -> '0'2764R:C: adjacent_5p upward } 0 17 {'0'2764R:C -> '0'2763R:G: adjacent_3p downward } 0 18 {'0'2764R:C -> '0'2765R:C: adjacent_5p } 0 19 {'0'2765R:C -> '0'2764R:C: adjacent_3p } 0 20 {'0'2765R:C -> '0'2766R:A: adjacent_5p upward } 0 21 {'0'2766R:A -> '0'2765R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2721R:U 0 1 '0'2722R:G 0 2 '0'2723R:G 0 3 '0'2724R:U 0 4 '0'2758R:G 0 5 '0'2759R:C 0 6 '0'2760R:C 0 7 '0'2761R:A 0 [Edges] 0 {'0'2721R:U -> '0'2722R:G: adjacent_5p upward } 0 1 {'0'2722R:G -> '0'2721R:U: adjacent_3p downward } 0 2 {'0'2721R:U -> '0'2761R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2761R:A -> '0'2721R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2722R:G -> '0'2723R:G: adjacent_5p upward } 0 5 {'0'2723R:G -> '0'2722R:G: adjacent_3p downward } 0 6 {'0'2722R:G -> '0'2760R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2760R:C -> '0'2722R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2722R:G -> '0'2761R:A: outward } 0 9 {'0'2761R:A -> '0'2722R:G: outward } 0 10 {'0'2723R:G -> '0'2724R:U: adjacent_5p upward } 0 11 {'0'2724R:U -> '0'2723R:G: adjacent_3p downward } 0 12 {'0'2723R:G -> '0'2759R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2759R:C -> '0'2723R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2724R:U -> '0'2758R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {'0'2758R:G -> '0'2724R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {'0'2758R:G -> '0'2759R:C: adjacent_5p upward } 0 17 {'0'2759R:C -> '0'2758R:G: adjacent_3p downward } 0 18 {'0'2759R:C -> '0'2760R:C: adjacent_5p upward } 0 19 {'0'2760R:C -> '0'2759R:C: adjacent_3p downward } 0 20 {'0'2760R:C -> '0'2761R:A: adjacent_5p } 0 21 {'0'2761R:A -> '0'2760R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2722R:G 0 1 '0'2723R:G 0 2 '0'2724R:U 0 3 '0'2725R:G 0 4 '0'2757R:A 0 5 '0'2758R:G 0 6 '0'2759R:C 0 7 '0'2760R:C 0 [Edges] 0 {'0'2722R:G -> '0'2723R:G: adjacent_5p upward } 0 1 {'0'2723R:G -> '0'2722R:G: adjacent_3p downward } 0 2 {'0'2722R:G -> '0'2760R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2760R:C -> '0'2722R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2723R:G -> '0'2724R:U: adjacent_5p upward } 0 5 {'0'2724R:U -> '0'2723R:G: adjacent_3p downward } 0 6 {'0'2723R:G -> '0'2759R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2759R:C -> '0'2723R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2724R:U -> '0'2725R:G: adjacent_5p upward } 0 9 {'0'2725R:G -> '0'2724R:U: adjacent_3p downward } 0 10 {'0'2724R:U -> '0'2758R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {'0'2758R:G -> '0'2724R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {'0'2725R:G -> '0'2757R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {'0'2757R:A -> '0'2725R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {'0'2757R:A -> '0'2758R:G: adjacent_5p upward } 0 15 {'0'2758R:G -> '0'2757R:A: adjacent_3p downward } 0 16 {'0'2758R:G -> '0'2759R:C: adjacent_5p upward } 0 17 {'0'2759R:C -> '0'2758R:G: adjacent_3p downward } 0 18 {'0'2759R:C -> '0'2760R:C: adjacent_5p upward } 0 19 {'0'2760R:C -> '0'2759R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2724R:U 0 1 '0'2725R:G 0 2 '0'2726R:U 0 3 '0'2727R:A 0 4 '0'2755R:G 0 5 '0'2756R:U 0 6 '0'2757R:A 0 7 '0'2758R:G 0 [Edges] 0 {'0'2724R:U -> '0'2725R:G: adjacent_5p upward } 0 1 {'0'2725R:G -> '0'2724R:U: adjacent_3p downward } 0 2 {'0'2724R:U -> '0'2758R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'2758R:G -> '0'2724R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'2725R:G -> '0'2726R:U: adjacent_5p } 0 5 {'0'2726R:U -> '0'2725R:G: adjacent_3p } 0 6 {'0'2725R:G -> '0'2755R:G: inward } 0 7 {'0'2755R:G -> '0'2725R:G: inward } 0 8 {'0'2725R:G -> '0'2757R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {'0'2757R:A -> '0'2725R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {'0'2726R:U -> '0'2727R:A: adjacent_5p } 0 11 {'0'2727R:A -> '0'2726R:U: adjacent_3p } 0 12 {'0'2727R:A -> '0'2755R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 13 {'0'2755R:G -> '0'2727R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 14 {'0'2727R:A -> '0'2756R:U: outward } 0 15 {'0'2756R:U -> '0'2727R:A: outward } 0 16 {'0'2755R:G -> '0'2756R:U: adjacent_5p } 0 17 {'0'2756R:U -> '0'2755R:G: adjacent_3p } 0 18 {'0'2756R:U -> '0'2757R:A: adjacent_5p upward } 0 19 {'0'2757R:A -> '0'2756R:U: adjacent_3p downward } 0 20 {'0'2757R:A -> '0'2758R:G: adjacent_5p upward } 0 21 {'0'2758R:G -> '0'2757R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . 6 . 8 . 2 . 5 . 10 . . . . 3 . . 11 . 12 14 . . 4 . 7 . 13 . 16 . . 5 . . . 15 17 . 18 . 6 . 9 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2725R:G 0 1 '0'2726R:U 0 2 '0'2727R:A 0 3 '0'2728R:C 0 4 '0'2754R:G 0 5 '0'2755R:G 0 6 '0'2756R:U 0 7 '0'2757R:A 0 [Edges] 0 {'0'2725R:G -> '0'2726R:U: adjacent_5p } 0 1 {'0'2726R:U -> '0'2725R:G: adjacent_3p } 0 2 {'0'2725R:G -> '0'2755R:G: inward } 0 3 {'0'2755R:G -> '0'2725R:G: inward } 0 4 {'0'2725R:G -> '0'2757R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {'0'2757R:A -> '0'2725R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {'0'2726R:U -> '0'2727R:A: adjacent_5p } 0 7 {'0'2727R:A -> '0'2726R:U: adjacent_3p } 0 8 {'0'2727R:A -> '0'2728R:C: adjacent_5p upward } 0 9 {'0'2728R:C -> '0'2727R:A: adjacent_3p downward } 0 10 {'0'2727R:A -> '0'2755R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 11 {'0'2755R:G -> '0'2727R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 12 {'0'2727R:A -> '0'2756R:U: outward } 0 13 {'0'2756R:U -> '0'2727R:A: outward } 0 14 {'0'2728R:C -> '0'2754R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2754R:G -> '0'2728R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2754R:G -> '0'2755R:G: adjacent_5p upward } 0 17 {'0'2755R:G -> '0'2754R:G: adjacent_3p downward } 0 18 {'0'2755R:G -> '0'2756R:U: adjacent_5p } 0 19 {'0'2756R:U -> '0'2755R:G: adjacent_3p } 0 20 {'0'2756R:U -> '0'2757R:A: adjacent_5p upward } 0 21 {'0'2757R:A -> '0'2756R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 . 4 1 1 . 6 . . . . . 2 . 7 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 3 . 11 . 17 . 18 . 6 . . 13 . . 19 . 20 7 5 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2727R:A 0 1 '0'2728R:C 0 2 '0'2729R:C 0 3 '0'2730R:G 0 4 '0'2752R:C 0 5 '0'2753R:G 0 6 '0'2754R:G 0 7 '0'2755R:G 0 [Edges] 0 {'0'2727R:A -> '0'2728R:C: adjacent_5p upward } 0 1 {'0'2728R:C -> '0'2727R:A: adjacent_3p downward } 0 2 {'0'2727R:A -> '0'2755R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 3 {'0'2755R:G -> '0'2727R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 4 {'0'2728R:C -> '0'2729R:C: adjacent_5p upward } 0 5 {'0'2729R:C -> '0'2728R:C: adjacent_3p downward } 0 6 {'0'2728R:C -> '0'2754R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2754R:G -> '0'2728R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2729R:C -> '0'2730R:G: adjacent_5p } 0 9 {'0'2730R:G -> '0'2729R:C: adjacent_3p } 0 10 {'0'2729R:C -> '0'2753R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2753R:G -> '0'2729R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2730R:G -> '0'2752R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2752R:C -> '0'2730R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2730R:G -> '0'2753R:G: outward } 0 15 {'0'2753R:G -> '0'2730R:G: outward } 0 16 {'0'2752R:C -> '0'2753R:G: adjacent_5p upward } 0 17 {'0'2753R:G -> '0'2752R:C: adjacent_3p downward } 0 18 {'0'2753R:G -> '0'2754R:G: adjacent_5p upward } 0 19 {'0'2754R:G -> '0'2753R:G: adjacent_3p downward } 0 20 {'0'2754R:G -> '0'2755R:G: adjacent_5p upward } 0 21 {'0'2755R:G -> '0'2754R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2728R:C 0 1 '0'2729R:C 0 2 '0'2730R:G 0 3 '0'2731R:G 0 4 '0'2751R:C 0 5 '0'2752R:C 0 6 '0'2753R:G 0 7 '0'2754R:G 0 [Edges] 0 {'0'2728R:C -> '0'2729R:C: adjacent_5p upward } 0 1 {'0'2729R:C -> '0'2728R:C: adjacent_3p downward } 0 2 {'0'2728R:C -> '0'2754R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2754R:G -> '0'2728R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2729R:C -> '0'2730R:G: adjacent_5p } 0 5 {'0'2730R:G -> '0'2729R:C: adjacent_3p } 0 6 {'0'2729R:C -> '0'2753R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2753R:G -> '0'2729R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2730R:G -> '0'2731R:G: adjacent_5p upward } 0 9 {'0'2731R:G -> '0'2730R:G: adjacent_3p downward } 0 10 {'0'2730R:G -> '0'2752R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2752R:C -> '0'2730R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2730R:G -> '0'2753R:G: outward } 0 13 {'0'2753R:G -> '0'2730R:G: outward } 0 14 {'0'2731R:G -> '0'2751R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2751R:C -> '0'2731R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2751R:C -> '0'2752R:C: adjacent_5p upward } 0 17 {'0'2752R:C -> '0'2751R:C: adjacent_3p downward } 0 18 {'0'2752R:C -> '0'2753R:G: adjacent_5p upward } 0 19 {'0'2753R:G -> '0'2752R:C: adjacent_3p downward } 0 20 {'0'2753R:G -> '0'2754R:G: adjacent_5p upward } 0 21 {'0'2754R:G -> '0'2753R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2729R:C 0 1 '0'2730R:G 0 2 '0'2731R:G 0 3 '0'2732R:U 0 4 '0'2750R:G 0 5 '0'2751R:C 0 6 '0'2752R:C 0 7 '0'2753R:G 0 [Edges] 0 {'0'2729R:C -> '0'2730R:G: adjacent_5p } 0 1 {'0'2730R:G -> '0'2729R:C: adjacent_3p } 0 2 {'0'2729R:C -> '0'2753R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2753R:G -> '0'2729R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2730R:G -> '0'2731R:G: adjacent_5p upward } 0 5 {'0'2731R:G -> '0'2730R:G: adjacent_3p downward } 0 6 {'0'2730R:G -> '0'2752R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2752R:C -> '0'2730R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2730R:G -> '0'2753R:G: outward } 0 9 {'0'2753R:G -> '0'2730R:G: outward } 0 10 {'0'2731R:G -> '0'2732R:U: adjacent_5p upward } 0 11 {'0'2732R:U -> '0'2731R:G: adjacent_3p downward } 0 12 {'0'2731R:G -> '0'2751R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2751R:C -> '0'2731R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2732R:U -> '0'2750R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {'0'2750R:G -> '0'2732R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {'0'2750R:G -> '0'2751R:C: adjacent_5p upward } 0 17 {'0'2751R:C -> '0'2750R:G: adjacent_3p downward } 0 18 {'0'2751R:C -> '0'2752R:C: adjacent_5p upward } 0 19 {'0'2752R:C -> '0'2751R:C: adjacent_3p downward } 0 20 {'0'2752R:C -> '0'2753R:G: adjacent_5p upward } 0 21 {'0'2753R:G -> '0'2752R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2733R:U 0 1 '0'2734R:G 0 2 '0'2735R:U 0 3 '0'2736R:U 0 4 '0'2743R:A 0 5 '0'2744R:G 0 6 '0'2745R:C 0 7 '0'2746R:A 0 [Edges] 0 {'0'2733R:U -> '0'2734R:G: adjacent_5p upward } 0 1 {'0'2734R:G -> '0'2733R:U: adjacent_3p downward } 0 2 {'0'2733R:U -> '0'2746R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2746R:A -> '0'2733R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2734R:G -> '0'2735R:U: adjacent_5p upward } 0 5 {'0'2735R:U -> '0'2734R:G: adjacent_3p downward } 0 6 {'0'2734R:G -> '0'2745R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2745R:C -> '0'2734R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2734R:G -> '0'2746R:A: outward } 0 9 {'0'2746R:A -> '0'2734R:G: outward } 0 10 {'0'2735R:U -> '0'2736R:U: adjacent_5p upward } 0 11 {'0'2736R:U -> '0'2735R:U: adjacent_3p downward } 0 12 {'0'2735R:U -> '0'2744R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {'0'2744R:G -> '0'2735R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {'0'2736R:U -> '0'2743R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2743R:A -> '0'2736R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2743R:A -> '0'2744R:G: adjacent_5p upward } 0 17 {'0'2744R:G -> '0'2743R:A: adjacent_3p downward } 0 18 {'0'2744R:G -> '0'2745R:C: adjacent_5p upward } 0 19 {'0'2745R:C -> '0'2744R:G: adjacent_3p downward } 0 20 {'0'2745R:C -> '0'2746R:A: adjacent_5p upward } 0 21 {'0'2746R:A -> '0'2745R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2734R:G 0 1 '0'2735R:U 0 2 '0'2736R:U 0 3 '0'2737R:C 0 4 '0'2742R:G 0 5 '0'2743R:A 0 6 '0'2744R:G 0 7 '0'2745R:C 0 [Edges] 0 {'0'2734R:G -> '0'2735R:U: adjacent_5p upward } 0 1 {'0'2735R:U -> '0'2734R:G: adjacent_3p downward } 0 2 {'0'2734R:G -> '0'2745R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2745R:C -> '0'2734R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2735R:U -> '0'2736R:U: adjacent_5p upward } 0 5 {'0'2736R:U -> '0'2735R:U: adjacent_3p downward } 0 6 {'0'2735R:U -> '0'2744R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'0'2744R:G -> '0'2735R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'0'2736R:U -> '0'2737R:C: adjacent_5p upward } 0 9 {'0'2737R:C -> '0'2736R:U: adjacent_3p downward } 0 10 {'0'2736R:U -> '0'2743R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2743R:A -> '0'2736R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2737R:C -> '0'2742R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2742R:G -> '0'2737R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2742R:G -> '0'2743R:A: adjacent_5p upward } 0 15 {'0'2743R:A -> '0'2742R:G: adjacent_3p downward } 0 16 {'0'2743R:A -> '0'2744R:G: adjacent_5p upward } 0 17 {'0'2744R:G -> '0'2743R:A: adjacent_3p downward } 0 18 {'0'2744R:G -> '0'2745R:C: adjacent_5p upward } 0 19 {'0'2745R:C -> '0'2744R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2769R:C 0 1 '0'2770R:G 0 2 '0'2771R:G 0 3 '0'2772R:G 0 4 '0'2802R:C 0 5 '0'2803R:C 0 6 '0'2804R:C 0 7 '0'2805R:A 0 [Edges] 0 {'0'2769R:C -> '0'2770R:G: adjacent_5p upward } 0 1 {'0'2770R:G -> '0'2769R:C: adjacent_3p downward } 0 2 {'0'2769R:C -> '0'2805R:A: pairing antiparallel trans one_hbond 72 Hw/Ss } 0 3 {'0'2805R:A -> '0'2769R:C: pairing antiparallel trans one_hbond 72 Ss/Hw } 0 4 {'0'2770R:G -> '0'2771R:G: adjacent_5p upward } 0 5 {'0'2771R:G -> '0'2770R:G: adjacent_3p downward } 0 6 {'0'2770R:G -> '0'2804R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2804R:C -> '0'2770R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2771R:G -> '0'2772R:G: adjacent_5p upward } 0 9 {'0'2772R:G -> '0'2771R:G: adjacent_3p downward } 0 10 {'0'2771R:G -> '0'2803R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2803R:C -> '0'2771R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2772R:G -> '0'2802R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2802R:C -> '0'2772R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2802R:C -> '0'2803R:C: adjacent_5p upward } 0 15 {'0'2803R:C -> '0'2802R:C: adjacent_3p downward } 0 16 {'0'2803R:C -> '0'2804R:C: adjacent_5p upward } 0 17 {'0'2804R:C -> '0'2803R:C: adjacent_3p downward } 0 18 {'0'2804R:C -> '0'2805R:A: adjacent_5p upward } 0 19 {'0'2805R:A -> '0'2804R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2770R:G 0 1 '0'2771R:G 0 2 '0'2772R:G 0 3 '0'2773R:G 0 4 '0'2801R:A 0 5 '0'2802R:C 0 6 '0'2803R:C 0 7 '0'2804R:C 0 [Edges] 0 {'0'2770R:G -> '0'2771R:G: adjacent_5p upward } 0 1 {'0'2771R:G -> '0'2770R:G: adjacent_3p downward } 0 2 {'0'2770R:G -> '0'2804R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2804R:C -> '0'2770R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2771R:G -> '0'2772R:G: adjacent_5p upward } 0 5 {'0'2772R:G -> '0'2771R:G: adjacent_3p downward } 0 6 {'0'2771R:G -> '0'2803R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2803R:C -> '0'2771R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2772R:G -> '0'2773R:G: adjacent_5p upward } 0 9 {'0'2773R:G -> '0'2772R:G: adjacent_3p downward } 0 10 {'0'2772R:G -> '0'2802R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2802R:C -> '0'2772R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2773R:G -> '0'2801R:A: pairing antiparallel cis VIII Ww/Ww } 0 13 {'0'2801R:A -> '0'2773R:G: pairing antiparallel cis VIII Ww/Ww } 0 14 {'0'2801R:A -> '0'2802R:C: adjacent_5p upward } 0 15 {'0'2802R:C -> '0'2801R:A: adjacent_3p downward } 0 16 {'0'2802R:C -> '0'2803R:C: adjacent_5p upward } 0 17 {'0'2803R:C -> '0'2802R:C: adjacent_3p downward } 0 18 {'0'2803R:C -> '0'2804R:C: adjacent_5p upward } 0 19 {'0'2804R:C -> '0'2803R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2773R:G 0 1 '0'2774R:U 0 2 '0'2775R:A 0 3 '0'2776R:A 0 4 '0'2798R:G 0 5 '0'2799R:A 0 6 '0'2800R:A 0 7 '0'2801R:A 0 [Edges] 0 {'0'2773R:G -> '0'2774R:U: adjacent_5p upward } 0 1 {'0'2774R:U -> '0'2773R:G: adjacent_3p downward } 0 2 {'0'2773R:G -> '0'2801R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {'0'2801R:A -> '0'2773R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {'0'2774R:U -> '0'2775R:A: adjacent_5p } 0 5 {'0'2775R:A -> '0'2774R:U: adjacent_3p } 0 6 {'0'2774R:U -> '0'2799R:A: pairing antiparallel trans XXIV Ww/Hh } 0 7 {'0'2799R:A -> '0'2774R:U: pairing antiparallel trans XXIV Hh/Ww } 0 8 {'0'2775R:A -> '0'2776R:A: adjacent_5p upward } 0 9 {'0'2776R:A -> '0'2775R:A: adjacent_3p downward } 0 10 {'0'2775R:A -> '0'2799R:A: outward } 0 11 {'0'2799R:A -> '0'2775R:A: outward } 0 12 {'0'2776R:A -> '0'2798R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {'0'2798R:G -> '0'2776R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {'0'2798R:G -> '0'2799R:A: adjacent_5p } 0 15 {'0'2799R:A -> '0'2798R:G: adjacent_3p } 0 16 {'0'2799R:A -> '0'2800R:A: adjacent_5p } 0 17 {'0'2800R:A -> '0'2799R:A: adjacent_3p } 0 18 {'0'2799R:A -> '0'2801R:A: upward } 0 19 {'0'2801R:A -> '0'2799R:A: downward } 0 20 {'0'2800R:A -> '0'2801R:A: adjacent_5p } 0 21 {'0'2801R:A -> '0'2800R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 . . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . 7 11 . 15 . 16 18 6 . . . . . 17 . 20 7 3 . . . . 19 21 . [GraphModel] [Vertices] 0 '0'2776R:A 0 1 '0'2777R:G 0 2 '0'2778R:A 0 3 '0'2779R:G 0 4 '0'2795R:C 0 5 '0'2796R:U 0 6 '0'2797R:C 0 7 '0'2798R:G 0 [Edges] 0 {'0'2776R:A -> '0'2777R:G: adjacent_5p upward } 0 1 {'0'2777R:G -> '0'2776R:A: adjacent_3p downward } 0 2 {'0'2776R:A -> '0'2798R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'2798R:G -> '0'2776R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'2777R:G -> '0'2778R:A: adjacent_5p upward } 0 5 {'0'2778R:A -> '0'2777R:G: adjacent_3p downward } 0 6 {'0'2777R:G -> '0'2797R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2797R:C -> '0'2777R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2778R:A -> '0'2779R:G: adjacent_5p upward } 0 9 {'0'2779R:G -> '0'2778R:A: adjacent_3p downward } 0 10 {'0'2778R:A -> '0'2796R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2796R:U -> '0'2778R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2779R:G -> '0'2795R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2795R:C -> '0'2779R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2795R:C -> '0'2796R:U: adjacent_5p } 0 15 {'0'2796R:U -> '0'2795R:C: adjacent_3p } 0 16 {'0'2796R:U -> '0'2797R:C: adjacent_5p upward } 0 17 {'0'2797R:C -> '0'2796R:U: adjacent_3p downward } 0 18 {'0'2797R:C -> '0'2798R:G: adjacent_5p upward } 0 19 {'0'2798R:G -> '0'2797R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2777R:G 0 1 '0'2778R:A 0 2 '0'2779R:G 0 3 '0'2780R:C 0 4 '0'2794R:G 0 5 '0'2795R:C 0 6 '0'2796R:U 0 7 '0'2797R:C 0 [Edges] 0 {'0'2777R:G -> '0'2778R:A: adjacent_5p upward } 0 1 {'0'2778R:A -> '0'2777R:G: adjacent_3p downward } 0 2 {'0'2777R:G -> '0'2797R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2797R:C -> '0'2777R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2778R:A -> '0'2779R:G: adjacent_5p upward } 0 5 {'0'2779R:G -> '0'2778R:A: adjacent_3p downward } 0 6 {'0'2778R:A -> '0'2796R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2796R:U -> '0'2778R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2779R:G -> '0'2780R:C: adjacent_5p upward } 0 9 {'0'2780R:C -> '0'2779R:G: adjacent_3p downward } 0 10 {'0'2779R:G -> '0'2795R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2795R:C -> '0'2779R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2780R:C -> '0'2794R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2794R:G -> '0'2780R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2794R:G -> '0'2795R:C: adjacent_5p upward } 0 15 {'0'2795R:C -> '0'2794R:G: adjacent_3p downward } 0 16 {'0'2795R:C -> '0'2796R:U: adjacent_5p } 0 17 {'0'2796R:U -> '0'2795R:C: adjacent_3p } 0 18 {'0'2796R:U -> '0'2797R:C: adjacent_5p upward } 0 19 {'0'2797R:C -> '0'2796R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2778R:A 0 1 '0'2779R:G 0 2 '0'2780R:C 0 3 '0'2781R:U 0 4 '0'2793R:A 0 5 '0'2794R:G 0 6 '0'2795R:C 0 7 '0'2796R:U 0 [Edges] 0 {'0'2778R:A -> '0'2779R:G: adjacent_5p upward } 0 1 {'0'2779R:G -> '0'2778R:A: adjacent_3p downward } 0 2 {'0'2778R:A -> '0'2796R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2796R:U -> '0'2778R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2779R:G -> '0'2780R:C: adjacent_5p upward } 0 5 {'0'2780R:C -> '0'2779R:G: adjacent_3p downward } 0 6 {'0'2779R:G -> '0'2795R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2795R:C -> '0'2779R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2780R:C -> '0'2781R:U: adjacent_5p upward } 0 9 {'0'2781R:U -> '0'2780R:C: adjacent_3p downward } 0 10 {'0'2780R:C -> '0'2794R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2794R:G -> '0'2780R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2781R:U -> '0'2793R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 13 {'0'2793R:A -> '0'2781R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 14 {'0'2793R:A -> '0'2794R:G: adjacent_5p upward } 0 15 {'0'2794R:G -> '0'2793R:A: adjacent_3p downward } 0 16 {'0'2794R:G -> '0'2795R:C: adjacent_5p upward } 0 17 {'0'2795R:C -> '0'2794R:G: adjacent_3p downward } 0 18 {'0'2795R:C -> '0'2796R:U: adjacent_5p } 0 19 {'0'2796R:U -> '0'2795R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2779R:G 0 1 '0'2780R:C 0 2 '0'2781R:U 0 3 '0'2782R:G 0 4 '0'2792R:A 0 5 '0'2793R:A 0 6 '0'2794R:G 0 7 '0'2795R:C 0 [Edges] 0 {'0'2779R:G -> '0'2780R:C: adjacent_5p upward } 0 1 {'0'2780R:C -> '0'2779R:G: adjacent_3p downward } 0 2 {'0'2779R:G -> '0'2795R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2795R:C -> '0'2779R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2780R:C -> '0'2781R:U: adjacent_5p upward } 0 5 {'0'2781R:U -> '0'2780R:C: adjacent_3p downward } 0 6 {'0'2780R:C -> '0'2794R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2794R:G -> '0'2780R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2781R:U -> '0'2782R:G: adjacent_5p upward } 0 9 {'0'2782R:G -> '0'2781R:U: adjacent_3p downward } 0 10 {'0'2781R:U -> '0'2793R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 11 {'0'2793R:A -> '0'2781R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 12 {'0'2782R:G -> '0'2792R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {'0'2792R:A -> '0'2782R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {'0'2792R:A -> '0'2793R:A: adjacent_5p upward } 0 15 {'0'2793R:A -> '0'2792R:A: adjacent_3p downward } 0 16 {'0'2793R:A -> '0'2794R:G: adjacent_5p upward } 0 17 {'0'2794R:G -> '0'2793R:A: adjacent_3p downward } 0 18 {'0'2794R:G -> '0'2795R:C: adjacent_5p upward } 0 19 {'0'2795R:C -> '0'2794R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2781R:U 0 1 '0'2782R:G 0 2 '0'2783R:A 0 3 '0'2784R:A 0 4 '0'2788R:A 0 5 '0'2789R:U 0 6 '0'2790R:C 0 7 '0'2791R:U 0 [Edges] 0 {'0'2781R:U -> '0'2782R:G: adjacent_5p upward } 0 1 {'0'2782R:G -> '0'2781R:U: adjacent_3p downward } 0 2 {'0'2781R:U -> '0'2791R:U: pairing antiparallel trans 81 Ww/Hh } 0 3 {'0'2791R:U -> '0'2781R:U: pairing antiparallel trans 81 Hh/Ww } 0 4 {'0'2782R:G -> '0'2783R:A: adjacent_5p } 0 5 {'0'2783R:A -> '0'2782R:G: adjacent_3p } 0 6 {'0'2782R:G -> '0'2789R:U: inward } 0 7 {'0'2789R:U -> '0'2782R:G: inward } 0 8 {'0'2783R:A -> '0'2784R:A: adjacent_5p upward } 0 9 {'0'2784R:A -> '0'2783R:A: adjacent_3p downward } 0 10 {'0'2783R:A -> '0'2789R:U: pairing antiparallel trans XXIV Hh/Ws } 0 11 {'0'2789R:U -> '0'2783R:A: pairing antiparallel trans XXIV Ws/Hh } 0 12 {'0'2784R:A -> '0'2788R:A: pairing antiparallel trans V Hh/Ww } 0 13 {'0'2788R:A -> '0'2784R:A: pairing antiparallel trans V Ww/Hh } 0 14 {'0'2788R:A -> '0'2789R:U: adjacent_5p upward } 0 15 {'0'2789R:U -> '0'2788R:A: adjacent_3p downward } 0 16 {'0'2789R:U -> '0'2790R:C: adjacent_5p } 0 17 {'0'2790R:C -> '0'2789R:U: adjacent_3p } 0 18 {'0'2790R:C -> '0'2791R:U: adjacent_5p } 0 19 {'0'2791R:U -> '0'2790R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 . . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . 7 11 . 15 . 16 . 6 . . . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2826R:G 0 1 '0'2827R:A 0 2 '0'2828R:G 0 3 '0'2829R:G 0 4 '0'2911R:C 0 5 '0'2912R:C 0 6 '0'2913R:A 0 7 '0'2914R:A 0 [Edges] 0 {'0'2826R:G -> '0'2827R:A: adjacent_5p } 0 1 {'0'2827R:A -> '0'2826R:G: adjacent_3p } 0 2 {'0'2826R:G -> '0'2913R:A: inward } 0 3 {'0'2913R:A -> '0'2826R:G: inward } 0 4 {'0'2826R:G -> '0'2914R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {'0'2914R:A -> '0'2826R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {'0'2827R:A -> '0'2828R:G: adjacent_5p upward } 0 7 {'0'2828R:G -> '0'2827R:A: adjacent_3p downward } 0 8 {'0'2827R:A -> '0'2913R:A: pairing antiparallel trans 41 Hh/Ss } 0 9 {'0'2913R:A -> '0'2827R:A: pairing antiparallel trans 41 Ss/Hh } 0 10 {'0'2827R:A -> '0'2914R:A: outward } 0 11 {'0'2914R:A -> '0'2827R:A: outward } 0 12 {'0'2828R:G -> '0'2829R:G: adjacent_5p upward } 0 13 {'0'2829R:G -> '0'2828R:G: adjacent_3p downward } 0 14 {'0'2828R:G -> '0'2912R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2912R:C -> '0'2828R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2829R:G -> '0'2911R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {'0'2911R:C -> '0'2829R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {'0'2911R:C -> '0'2912R:C: adjacent_5p } 0 19 {'0'2912R:C -> '0'2911R:C: adjacent_3p } 0 20 {'0'2912R:C -> '0'2913R:A: adjacent_5p upward } 0 21 {'0'2913R:A -> '0'2912R:C: adjacent_3p downward } 0 22 {'0'2913R:A -> '0'2914R:A: adjacent_5p } 0 23 {'0'2914R:A -> '0'2913R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 18 . . 5 . . 15 . 19 . 20 . 6 3 9 . . . 21 . 22 7 5 11 . . . . 23 . [GraphModel] [Vertices] 0 '0'2827R:A 0 1 '0'2828R:G 0 2 '0'2829R:G 0 3 '0'2830R:U 0 4 '0'2910R:A 0 5 '0'2911R:C 0 6 '0'2912R:C 0 7 '0'2913R:A 0 [Edges] 0 {'0'2827R:A -> '0'2828R:G: adjacent_5p upward } 0 1 {'0'2828R:G -> '0'2827R:A: adjacent_3p downward } 0 2 {'0'2827R:A -> '0'2913R:A: pairing antiparallel trans 41 Hh/Ss } 0 3 {'0'2913R:A -> '0'2827R:A: pairing antiparallel trans 41 Ss/Hh } 0 4 {'0'2828R:G -> '0'2829R:G: adjacent_5p upward } 0 5 {'0'2829R:G -> '0'2828R:G: adjacent_3p downward } 0 6 {'0'2828R:G -> '0'2912R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2912R:C -> '0'2828R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2829R:G -> '0'2830R:U: adjacent_5p upward } 0 9 {'0'2830R:U -> '0'2829R:G: adjacent_3p downward } 0 10 {'0'2829R:G -> '0'2911R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2911R:C -> '0'2829R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2830R:U -> '0'2910R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 13 {'0'2910R:A -> '0'2830R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 14 {'0'2910R:A -> '0'2911R:C: adjacent_5p upward } 0 15 {'0'2911R:C -> '0'2910R:A: adjacent_3p downward } 0 16 {'0'2911R:C -> '0'2912R:C: adjacent_5p } 0 17 {'0'2912R:C -> '0'2911R:C: adjacent_3p } 0 18 {'0'2912R:C -> '0'2913R:A: adjacent_5p upward } 0 19 {'0'2913R:A -> '0'2912R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2828R:G 0 1 '0'2829R:G 0 2 '0'2830R:U 0 3 '0'2831R:C 0 4 '0'2909R:G 0 5 '0'2910R:A 0 6 '0'2911R:C 0 7 '0'2912R:C 0 [Edges] 0 {'0'2828R:G -> '0'2829R:G: adjacent_5p upward } 0 1 {'0'2829R:G -> '0'2828R:G: adjacent_3p downward } 0 2 {'0'2828R:G -> '0'2912R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2912R:C -> '0'2828R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2829R:G -> '0'2830R:U: adjacent_5p upward } 0 5 {'0'2830R:U -> '0'2829R:G: adjacent_3p downward } 0 6 {'0'2829R:G -> '0'2911R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2911R:C -> '0'2829R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2830R:U -> '0'2831R:C: adjacent_5p upward } 0 9 {'0'2831R:C -> '0'2830R:U: adjacent_3p downward } 0 10 {'0'2830R:U -> '0'2910R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {'0'2910R:A -> '0'2830R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {'0'2831R:C -> '0'2909R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 13 {'0'2909R:G -> '0'2831R:C: pairing antiparallel cis one_hbond Ws/Ws } 0 14 {'0'2909R:G -> '0'2910R:A: adjacent_5p upward } 0 15 {'0'2910R:A -> '0'2909R:G: adjacent_3p downward } 0 16 {'0'2910R:A -> '0'2911R:C: adjacent_5p upward } 0 17 {'0'2911R:C -> '0'2910R:A: adjacent_3p downward } 0 18 {'0'2911R:C -> '0'2912R:C: adjacent_5p } 0 19 {'0'2912R:C -> '0'2911R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2829R:G 0 1 '0'2830R:U 0 2 '0'2831R:C 0 3 '0'2832R:C 0 4 '0'2908R:A 0 5 '0'2909R:G 0 6 '0'2910R:A 0 7 '0'2911R:C 0 [Edges] 0 {'0'2829R:G -> '0'2830R:U: adjacent_5p upward } 0 1 {'0'2830R:U -> '0'2829R:G: adjacent_3p downward } 0 2 {'0'2829R:G -> '0'2911R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2911R:C -> '0'2829R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2830R:U -> '0'2831R:C: adjacent_5p upward } 0 5 {'0'2831R:C -> '0'2830R:U: adjacent_3p downward } 0 6 {'0'2830R:U -> '0'2910R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {'0'2910R:A -> '0'2830R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {'0'2831R:C -> '0'2832R:C: adjacent_5p upward } 0 9 {'0'2832R:C -> '0'2831R:C: adjacent_3p downward } 0 10 {'0'2831R:C -> '0'2909R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 11 {'0'2909R:G -> '0'2831R:C: pairing antiparallel cis one_hbond Ws/Ws } 0 12 {'0'2832R:C -> '0'2908R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 13 {'0'2908R:A -> '0'2832R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 14 {'0'2908R:A -> '0'2909R:G: adjacent_5p upward } 0 15 {'0'2909R:G -> '0'2908R:A: adjacent_3p downward } 0 16 {'0'2909R:G -> '0'2910R:A: adjacent_5p upward } 0 17 {'0'2910R:A -> '0'2909R:G: adjacent_3p downward } 0 18 {'0'2910R:A -> '0'2911R:C: adjacent_5p upward } 0 19 {'0'2911R:C -> '0'2910R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2832R:C 0 1 '0'2833R:C 0 2 '0'2834R:G 0 3 '0'2835R:C 0 4 '0'2845R:G 0 5 '0'2846R:C 0 6 '0'2847R:G 0 7 '0'2848R:G 0 [Edges] 0 {'0'2832R:C -> '0'2833R:C: adjacent_5p upward } 0 1 {'0'2833R:C -> '0'2832R:C: adjacent_3p downward } 0 2 {'0'2832R:C -> '0'2848R:G: pairing antiparallel cis Ww/Ww } 0 3 {'0'2848R:G -> '0'2832R:C: pairing antiparallel cis Ww/Ww } 0 4 {'0'2833R:C -> '0'2834R:G: adjacent_5p } 0 5 {'0'2834R:G -> '0'2833R:C: adjacent_3p } 0 6 {'0'2833R:C -> '0'2847R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2847R:G -> '0'2833R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2834R:G -> '0'2835R:C: adjacent_5p upward } 0 9 {'0'2835R:C -> '0'2834R:G: adjacent_3p downward } 0 10 {'0'2834R:G -> '0'2846R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2846R:C -> '0'2834R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2834R:G -> '0'2847R:G: outward } 0 13 {'0'2847R:G -> '0'2834R:G: outward } 0 14 {'0'2835R:C -> '0'2845R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2845R:G -> '0'2835R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2845R:G -> '0'2846R:C: adjacent_5p upward } 0 17 {'0'2846R:C -> '0'2845R:G: adjacent_3p downward } 0 18 {'0'2846R:C -> '0'2847R:G: adjacent_5p upward } 0 19 {'0'2847R:G -> '0'2846R:C: adjacent_3p downward } 0 20 {'0'2847R:G -> '0'2848R:G: adjacent_5p upward } 0 21 {'0'2848R:G -> '0'2847R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2833R:C 0 1 '0'2834R:G 0 2 '0'2835R:C 0 3 '0'2836R:G 0 4 '0'2844R:C 0 5 '0'2845R:G 0 6 '0'2846R:C 0 7 '0'2847R:G 0 [Edges] 0 {'0'2833R:C -> '0'2834R:G: adjacent_5p } 0 1 {'0'2834R:G -> '0'2833R:C: adjacent_3p } 0 2 {'0'2833R:C -> '0'2847R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2847R:G -> '0'2833R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2834R:G -> '0'2835R:C: adjacent_5p upward } 0 5 {'0'2835R:C -> '0'2834R:G: adjacent_3p downward } 0 6 {'0'2834R:G -> '0'2846R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2846R:C -> '0'2834R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2834R:G -> '0'2847R:G: outward } 0 9 {'0'2847R:G -> '0'2834R:G: outward } 0 10 {'0'2835R:C -> '0'2836R:G: adjacent_5p upward } 0 11 {'0'2836R:G -> '0'2835R:C: adjacent_3p downward } 0 12 {'0'2835R:C -> '0'2845R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2845R:G -> '0'2835R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2836R:G -> '0'2844R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2844R:C -> '0'2836R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2836R:G -> '0'2845R:G: outward } 0 17 {'0'2845R:G -> '0'2836R:G: outward } 0 18 {'0'2844R:C -> '0'2845R:G: adjacent_5p upward } 0 19 {'0'2845R:G -> '0'2844R:C: adjacent_3p downward } 0 20 {'0'2845R:G -> '0'2846R:C: adjacent_5p upward } 0 21 {'0'2846R:C -> '0'2845R:G: adjacent_3p downward } 0 22 {'0'2846R:C -> '0'2847R:G: adjacent_5p upward } 0 23 {'0'2847R:G -> '0'2846R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'2856R:A 0 1 '0'2857R:C 0 2 '0'2858R:U 0 3 '0'2859R:C 0 4 '0'2898R:G 0 5 '0'2899R:A 0 6 '0'2900R:G 0 7 '0'2901R:C 0 [Edges] 0 {'0'2856R:A -> '0'2857R:C: adjacent_5p upward } 0 1 {'0'2857R:C -> '0'2856R:A: adjacent_3p downward } 0 2 {'0'2856R:A -> '0'2901R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 3 {'0'2901R:C -> '0'2856R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 4 {'0'2857R:C -> '0'2858R:U: adjacent_5p upward } 0 5 {'0'2858R:U -> '0'2857R:C: adjacent_3p downward } 0 6 {'0'2857R:C -> '0'2900R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2900R:G -> '0'2857R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2858R:U -> '0'2859R:C: adjacent_5p upward } 0 9 {'0'2859R:C -> '0'2858R:U: adjacent_3p downward } 0 10 {'0'2858R:U -> '0'2899R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'2899R:A -> '0'2858R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'2859R:C -> '0'2898R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2898R:G -> '0'2859R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2898R:G -> '0'2899R:A: adjacent_5p upward } 0 15 {'0'2899R:A -> '0'2898R:G: adjacent_3p downward } 0 16 {'0'2899R:A -> '0'2900R:G: adjacent_5p upward } 0 17 {'0'2900R:G -> '0'2899R:A: adjacent_3p downward } 0 18 {'0'2900R:G -> '0'2901R:C: adjacent_5p upward } 0 19 {'0'2901R:C -> '0'2900R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2857R:C 0 1 '0'2858R:U 0 2 '0'2859R:C 0 3 '0'2860R:G 0 4 '0'2897R:C 0 5 '0'2898R:G 0 6 '0'2899R:A 0 7 '0'2900R:G 0 [Edges] 0 {'0'2857R:C -> '0'2858R:U: adjacent_5p upward } 0 1 {'0'2858R:U -> '0'2857R:C: adjacent_3p downward } 0 2 {'0'2857R:C -> '0'2900R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2900R:G -> '0'2857R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2858R:U -> '0'2859R:C: adjacent_5p upward } 0 5 {'0'2859R:C -> '0'2858R:U: adjacent_3p downward } 0 6 {'0'2858R:U -> '0'2899R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2899R:A -> '0'2858R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2859R:C -> '0'2860R:G: adjacent_5p upward } 0 9 {'0'2860R:G -> '0'2859R:C: adjacent_3p downward } 0 10 {'0'2859R:C -> '0'2898R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2898R:G -> '0'2859R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2860R:G -> '0'2897R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2897R:C -> '0'2860R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2860R:G -> '0'2898R:G: outward } 0 15 {'0'2898R:G -> '0'2860R:G: outward } 0 16 {'0'2897R:C -> '0'2898R:G: adjacent_5p } 0 17 {'0'2898R:G -> '0'2897R:C: adjacent_3p } 0 18 {'0'2898R:G -> '0'2899R:A: adjacent_5p upward } 0 19 {'0'2899R:A -> '0'2898R:G: adjacent_3p downward } 0 20 {'0'2899R:A -> '0'2900R:G: adjacent_5p upward } 0 21 {'0'2900R:G -> '0'2899R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2861R:G 0 1 '0'2862R:G 0 2 '0'2863R:G 0 3 '0'2864R:U 0 4 '0'2892R:G 0 5 '0'2893R:C 0 6 '0'2894R:C 0 7 '0'2895R:C 0 [Edges] 0 {'0'2861R:G -> '0'2862R:G: adjacent_5p upward } 0 1 {'0'2862R:G -> '0'2861R:G: adjacent_3p downward } 0 2 {'0'2861R:G -> '0'2895R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2895R:C -> '0'2861R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2862R:G -> '0'2863R:G: adjacent_5p upward } 0 5 {'0'2863R:G -> '0'2862R:G: adjacent_3p downward } 0 6 {'0'2862R:G -> '0'2894R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2894R:C -> '0'2862R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2862R:G -> '0'2895R:C: outward } 0 9 {'0'2895R:C -> '0'2862R:G: outward } 0 10 {'0'2863R:G -> '0'2864R:U: adjacent_5p upward } 0 11 {'0'2864R:U -> '0'2863R:G: adjacent_3p downward } 0 12 {'0'2863R:G -> '0'2893R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2893R:C -> '0'2863R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2864R:U -> '0'2892R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {'0'2892R:G -> '0'2864R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {'0'2892R:G -> '0'2893R:C: adjacent_5p upward } 0 17 {'0'2893R:C -> '0'2892R:G: adjacent_3p downward } 0 18 {'0'2893R:C -> '0'2894R:C: adjacent_5p upward } 0 19 {'0'2894R:C -> '0'2893R:C: adjacent_3p downward } 0 20 {'0'2894R:C -> '0'2895R:C: adjacent_5p } 0 21 {'0'2895R:C -> '0'2894R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '0'2862R:G 0 1 '0'2863R:G 0 2 '0'2864R:U 0 3 '0'2865R:G 0 4 '0'2891R:A 0 5 '0'2892R:G 0 6 '0'2893R:C 0 7 '0'2894R:C 0 [Edges] 0 {'0'2862R:G -> '0'2863R:G: adjacent_5p upward } 0 1 {'0'2863R:G -> '0'2862R:G: adjacent_3p downward } 0 2 {'0'2862R:G -> '0'2894R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2894R:C -> '0'2862R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2863R:G -> '0'2864R:U: adjacent_5p upward } 0 5 {'0'2864R:U -> '0'2863R:G: adjacent_3p downward } 0 6 {'0'2863R:G -> '0'2893R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2893R:C -> '0'2863R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2864R:U -> '0'2865R:G: adjacent_5p upward } 0 9 {'0'2865R:G -> '0'2864R:U: adjacent_3p downward } 0 10 {'0'2864R:U -> '0'2892R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {'0'2892R:G -> '0'2864R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {'0'2865R:G -> '0'2891R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {'0'2891R:A -> '0'2865R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {'0'2891R:A -> '0'2892R:G: adjacent_5p upward } 0 15 {'0'2892R:G -> '0'2891R:A: adjacent_3p downward } 0 16 {'0'2892R:G -> '0'2893R:C: adjacent_5p upward } 0 17 {'0'2893R:C -> '0'2892R:G: adjacent_3p downward } 0 18 {'0'2893R:C -> '0'2894R:C: adjacent_5p upward } 0 19 {'0'2894R:C -> '0'2893R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '0'2868R:C 0 1 '0'2869R:G 0 2 '0'2870R:C 0 3 '0'2871R:G 0 4 '0'2886R:C 0 5 '0'2887R:G 0 6 '0'2888R:U 0 7 '0'2889R:U 0 [Edges] 0 {'0'2868R:C -> '0'2869R:G: adjacent_5p upward } 0 1 {'0'2869R:G -> '0'2868R:C: adjacent_3p downward } 0 2 {'0'2868R:C -> '0'2889R:U: pairing parallel trans one_hbond 101 Hw/Hw } 0 3 {'0'2889R:U -> '0'2868R:C: pairing parallel trans one_hbond 101 Hw/Hw } 0 4 {'0'2869R:G -> '0'2870R:C: adjacent_5p upward } 0 5 {'0'2870R:C -> '0'2869R:G: adjacent_3p downward } 0 6 {'0'2869R:G -> '0'2888R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'2888R:U -> '0'2869R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'2870R:C -> '0'2871R:G: adjacent_5p upward } 0 9 {'0'2871R:G -> '0'2870R:C: adjacent_3p downward } 0 10 {'0'2870R:C -> '0'2887R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2887R:G -> '0'2870R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2871R:G -> '0'2886R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'0'2886R:C -> '0'2871R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'0'2871R:G -> '0'2887R:G: outward } 0 15 {'0'2887R:G -> '0'2871R:G: outward } 0 16 {'0'2886R:C -> '0'2887R:G: adjacent_5p } 0 17 {'0'2887R:G -> '0'2886R:C: adjacent_3p } 0 18 {'0'2887R:G -> '0'2888R:U: adjacent_5p upward } 0 19 {'0'2888R:U -> '0'2887R:G: adjacent_3p downward } 0 20 {'0'2888R:U -> '0'2889R:U: adjacent_5p inward } 0 21 {'0'2889R:U -> '0'2888R:U: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2869R:G 0 1 '0'2870R:C 0 2 '0'2871R:G 0 3 '0'2872R:U 0 4 '0'2885R:A 0 5 '0'2886R:C 0 6 '0'2887R:G 0 7 '0'2888R:U 0 [Edges] 0 {'0'2869R:G -> '0'2870R:C: adjacent_5p upward } 0 1 {'0'2870R:C -> '0'2869R:G: adjacent_3p downward } 0 2 {'0'2869R:G -> '0'2888R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'2888R:U -> '0'2869R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'2870R:C -> '0'2871R:G: adjacent_5p upward } 0 5 {'0'2871R:G -> '0'2870R:C: adjacent_3p downward } 0 6 {'0'2870R:C -> '0'2887R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2887R:G -> '0'2870R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2871R:G -> '0'2872R:U: adjacent_5p upward } 0 9 {'0'2872R:U -> '0'2871R:G: adjacent_3p downward } 0 10 {'0'2871R:G -> '0'2886R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2886R:C -> '0'2871R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2871R:G -> '0'2887R:G: outward } 0 13 {'0'2887R:G -> '0'2871R:G: outward } 0 14 {'0'2872R:U -> '0'2885R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'0'2885R:A -> '0'2872R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'0'2885R:A -> '0'2886R:C: adjacent_5p upward } 0 17 {'0'2886R:C -> '0'2885R:A: adjacent_3p downward } 0 18 {'0'2886R:C -> '0'2887R:G: adjacent_5p } 0 19 {'0'2887R:G -> '0'2886R:C: adjacent_3p } 0 20 {'0'2887R:G -> '0'2888R:U: adjacent_5p upward } 0 21 {'0'2888R:U -> '0'2887R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2870R:C 0 1 '0'2871R:G 0 2 '0'2872R:U 0 3 '0'2873R:C 0 4 '0'2884R:G 0 5 '0'2885R:A 0 6 '0'2886R:C 0 7 '0'2887R:G 0 [Edges] 0 {'0'2870R:C -> '0'2871R:G: adjacent_5p upward } 0 1 {'0'2871R:G -> '0'2870R:C: adjacent_3p downward } 0 2 {'0'2870R:C -> '0'2887R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2887R:G -> '0'2870R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2871R:G -> '0'2872R:U: adjacent_5p upward } 0 5 {'0'2872R:U -> '0'2871R:G: adjacent_3p downward } 0 6 {'0'2871R:G -> '0'2886R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2886R:C -> '0'2871R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2871R:G -> '0'2887R:G: outward } 0 9 {'0'2887R:G -> '0'2871R:G: outward } 0 10 {'0'2872R:U -> '0'2873R:C: adjacent_5p upward } 0 11 {'0'2873R:C -> '0'2872R:U: adjacent_3p downward } 0 12 {'0'2872R:U -> '0'2885R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2885R:A -> '0'2872R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2873R:C -> '0'2884R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2884R:G -> '0'2873R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2873R:C -> '0'2885R:A: outward } 0 17 {'0'2885R:A -> '0'2873R:C: outward } 0 18 {'0'2884R:G -> '0'2885R:A: adjacent_5p upward } 0 19 {'0'2885R:A -> '0'2884R:G: adjacent_3p downward } 0 20 {'0'2885R:A -> '0'2886R:C: adjacent_5p upward } 0 21 {'0'2886R:C -> '0'2885R:A: adjacent_3p downward } 0 22 {'0'2886R:C -> '0'2887R:G: adjacent_5p } 0 23 {'0'2887R:G -> '0'2886R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 '0'2871R:G 0 1 '0'2872R:U 0 2 '0'2873R:C 0 3 '0'2874R:G 0 4 '0'2883R:A 0 5 '0'2884R:G 0 6 '0'2885R:A 0 7 '0'2886R:C 0 [Edges] 0 {'0'2871R:G -> '0'2872R:U: adjacent_5p upward } 0 1 {'0'2872R:U -> '0'2871R:G: adjacent_3p downward } 0 2 {'0'2871R:G -> '0'2886R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2886R:C -> '0'2871R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2872R:U -> '0'2873R:C: adjacent_5p upward } 0 5 {'0'2873R:C -> '0'2872R:U: adjacent_3p downward } 0 6 {'0'2872R:U -> '0'2885R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2885R:A -> '0'2872R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2873R:C -> '0'2874R:G: adjacent_5p upward } 0 9 {'0'2874R:G -> '0'2873R:C: adjacent_3p downward } 0 10 {'0'2873R:C -> '0'2884R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'2884R:G -> '0'2873R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'2873R:C -> '0'2885R:A: outward } 0 13 {'0'2885R:A -> '0'2873R:C: outward } 0 14 {'0'2874R:G -> '0'2883R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {'0'2883R:A -> '0'2874R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {'0'2883R:A -> '0'2884R:G: adjacent_5p upward } 0 17 {'0'2884R:G -> '0'2883R:A: adjacent_3p downward } 0 18 {'0'2884R:G -> '0'2885R:A: adjacent_5p upward } 0 19 {'0'2885R:A -> '0'2884R:G: adjacent_3p downward } 0 20 {'0'2885R:A -> '0'2886R:C: adjacent_5p upward } 0 21 {'0'2886R:C -> '0'2885R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '0'2872R:U 0 1 '0'2873R:C 0 2 '0'2874R:G 0 3 '0'2875R:A 0 4 '0'2882R:G 0 5 '0'2883R:A 0 6 '0'2884R:G 0 7 '0'2885R:A 0 [Edges] 0 {'0'2872R:U -> '0'2873R:C: adjacent_5p upward } 0 1 {'0'2873R:C -> '0'2872R:U: adjacent_3p downward } 0 2 {'0'2872R:U -> '0'2885R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2885R:A -> '0'2872R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2873R:C -> '0'2874R:G: adjacent_5p upward } 0 5 {'0'2874R:G -> '0'2873R:C: adjacent_3p downward } 0 6 {'0'2873R:C -> '0'2884R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2884R:G -> '0'2873R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2873R:C -> '0'2885R:A: outward } 0 9 {'0'2885R:A -> '0'2873R:C: outward } 0 10 {'0'2874R:G -> '0'2875R:A: adjacent_5p } 0 11 {'0'2875R:A -> '0'2874R:G: adjacent_3p } 0 12 {'0'2874R:G -> '0'2882R:G: inward } 0 13 {'0'2882R:G -> '0'2874R:G: inward } 0 14 {'0'2874R:G -> '0'2883R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {'0'2883R:A -> '0'2874R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {'0'2875R:A -> '0'2882R:G: pairing antiparallel trans XI Hh/Ss } 0 17 {'0'2882R:G -> '0'2875R:A: pairing antiparallel trans XI Ss/Hh } 0 18 {'0'2875R:A -> '0'2883R:A: outward } 0 19 {'0'2883R:A -> '0'2875R:A: outward } 0 20 {'0'2882R:G -> '0'2883R:A: adjacent_5p } 0 21 {'0'2883R:A -> '0'2882R:G: adjacent_3p } 0 22 {'0'2883R:A -> '0'2884R:G: adjacent_5p upward } 0 23 {'0'2884R:G -> '0'2883R:A: adjacent_3p downward } 0 24 {'0'2884R:G -> '0'2885R:A: adjacent_5p upward } 0 25 {'0'2885R:A -> '0'2884R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 12 14 . . 3 . . 11 . 16 18 . . 4 . . 13 17 . 20 . . 5 . . 15 19 21 . 22 . 6 . 7 . . . 23 . 24 7 3 9 . . . . 25 . [GraphModel] [Vertices] 0 '0'2873R:C 0 1 '0'2874R:G 0 2 '0'2875R:A 0 3 '0'2876R:G 0 4 '0'2881R:C 0 5 '0'2882R:G 0 6 '0'2883R:A 0 7 '0'2884R:G 0 [Edges] 0 {'0'2873R:C -> '0'2874R:G: adjacent_5p upward } 0 1 {'0'2874R:G -> '0'2873R:C: adjacent_3p downward } 0 2 {'0'2873R:C -> '0'2884R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2884R:G -> '0'2873R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2874R:G -> '0'2875R:A: adjacent_5p } 0 5 {'0'2875R:A -> '0'2874R:G: adjacent_3p } 0 6 {'0'2874R:G -> '0'2882R:G: inward } 0 7 {'0'2882R:G -> '0'2874R:G: inward } 0 8 {'0'2874R:G -> '0'2883R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {'0'2883R:A -> '0'2874R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {'0'2875R:A -> '0'2876R:G: adjacent_5p } 0 11 {'0'2876R:G -> '0'2875R:A: adjacent_3p } 0 12 {'0'2875R:A -> '0'2882R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {'0'2882R:G -> '0'2875R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {'0'2875R:A -> '0'2883R:A: outward } 0 15 {'0'2883R:A -> '0'2875R:A: outward } 0 16 {'0'2876R:G -> '0'2881R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {'0'2881R:C -> '0'2876R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {'0'2881R:C -> '0'2882R:G: adjacent_5p upward } 0 19 {'0'2882R:G -> '0'2881R:C: adjacent_3p downward } 0 20 {'0'2882R:G -> '0'2883R:A: adjacent_5p } 0 21 {'0'2883R:A -> '0'2882R:G: adjacent_3p } 0 22 {'0'2883R:A -> '0'2884R:G: adjacent_5p upward } 0 23 {'0'2884R:G -> '0'2883R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . 7 13 . 19 . 20 . 6 . 9 15 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 '0'2874R:G 0 1 '0'2875R:A 0 2 '0'2876R:G 0 3 '0'2877R:G 0 4 '0'2880R:A 0 5 '0'2881R:C 0 6 '0'2882R:G 0 7 '0'2883R:A 0 [Edges] 0 {'0'2874R:G -> '0'2875R:A: adjacent_5p } 0 1 {'0'2875R:A -> '0'2874R:G: adjacent_3p } 0 2 {'0'2874R:G -> '0'2882R:G: inward } 0 3 {'0'2882R:G -> '0'2874R:G: inward } 0 4 {'0'2874R:G -> '0'2883R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {'0'2883R:A -> '0'2874R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {'0'2875R:A -> '0'2876R:G: adjacent_5p } 0 7 {'0'2876R:G -> '0'2875R:A: adjacent_3p } 0 8 {'0'2875R:A -> '0'2882R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {'0'2882R:G -> '0'2875R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {'0'2875R:A -> '0'2883R:A: outward } 0 11 {'0'2883R:A -> '0'2875R:A: outward } 0 12 {'0'2876R:G -> '0'2877R:G: adjacent_5p upward } 0 13 {'0'2877R:G -> '0'2876R:G: adjacent_3p downward } 0 14 {'0'2876R:G -> '0'2881R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'2881R:C -> '0'2876R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'2877R:G -> '0'2880R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 17 {'0'2880R:A -> '0'2877R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 18 {'0'2880R:A -> '0'2881R:C: adjacent_5p upward } 0 19 {'0'2881R:C -> '0'2880R:A: adjacent_3p downward } 0 20 {'0'2881R:C -> '0'2882R:G: adjacent_5p upward } 0 21 {'0'2882R:G -> '0'2881R:C: adjacent_3p downward } 0 22 {'0'2882R:G -> '0'2883R:A: adjacent_5p } 0 23 {'0'2883R:A -> '0'2882R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 18 . . 5 . . 15 . 19 . 20 . 6 3 9 . . . 21 . 22 7 5 11 . . . . 23 . [GraphModel] [Vertices] 0 '9'3004R:G 0 1 '9'3005R:G 0 2 '9'3006R:C 0 3 '9'3007R:G 0 4 '9'3116R:C 0 5 '9'3117R:G 0 6 '9'3118R:C 0 7 '9'3119R:C 0 [Edges] 0 {'9'3004R:G -> '9'3005R:G: adjacent_5p upward } 0 1 {'9'3005R:G -> '9'3004R:G: adjacent_3p downward } 0 2 {'9'3004R:G -> '9'3119R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3119R:C -> '9'3004R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3005R:G -> '9'3006R:C: adjacent_5p upward } 0 5 {'9'3006R:C -> '9'3005R:G: adjacent_3p downward } 0 6 {'9'3005R:G -> '9'3118R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3118R:C -> '9'3005R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3006R:C -> '9'3007R:G: adjacent_5p } 0 9 {'9'3007R:G -> '9'3006R:C: adjacent_3p } 0 10 {'9'3006R:C -> '9'3117R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'9'3117R:G -> '9'3006R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'9'3007R:G -> '9'3116R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'9'3116R:C -> '9'3007R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'9'3007R:G -> '9'3117R:G: outward } 0 15 {'9'3117R:G -> '9'3007R:G: outward } 0 16 {'9'3116R:C -> '9'3117R:G: adjacent_5p } 0 17 {'9'3117R:G -> '9'3116R:C: adjacent_3p } 0 18 {'9'3117R:G -> '9'3118R:C: adjacent_5p upward } 0 19 {'9'3118R:C -> '9'3117R:G: adjacent_3p downward } 0 20 {'9'3118R:C -> '9'3119R:C: adjacent_5p } 0 21 {'9'3119R:C -> '9'3118R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '9'3005R:G 0 1 '9'3006R:C 0 2 '9'3007R:G 0 3 '9'3008R:G 0 4 '9'3115R:C 0 5 '9'3116R:C 0 6 '9'3117R:G 0 7 '9'3118R:C 0 [Edges] 0 {'9'3005R:G -> '9'3006R:C: adjacent_5p upward } 0 1 {'9'3006R:C -> '9'3005R:G: adjacent_3p downward } 0 2 {'9'3005R:G -> '9'3118R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3118R:C -> '9'3005R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3006R:C -> '9'3007R:G: adjacent_5p } 0 5 {'9'3007R:G -> '9'3006R:C: adjacent_3p } 0 6 {'9'3006R:C -> '9'3117R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3117R:G -> '9'3006R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3007R:G -> '9'3008R:G: adjacent_5p upward } 0 9 {'9'3008R:G -> '9'3007R:G: adjacent_3p downward } 0 10 {'9'3007R:G -> '9'3116R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'9'3116R:C -> '9'3007R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'9'3007R:G -> '9'3117R:G: outward } 0 13 {'9'3117R:G -> '9'3007R:G: outward } 0 14 {'9'3008R:G -> '9'3115R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'9'3115R:C -> '9'3008R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'9'3115R:C -> '9'3116R:C: adjacent_5p upward } 0 17 {'9'3116R:C -> '9'3115R:C: adjacent_3p downward } 0 18 {'9'3116R:C -> '9'3117R:G: adjacent_5p } 0 19 {'9'3117R:G -> '9'3116R:C: adjacent_3p } 0 20 {'9'3117R:G -> '9'3118R:C: adjacent_5p upward } 0 21 {'9'3118R:C -> '9'3117R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '9'3006R:C 0 1 '9'3007R:G 0 2 '9'3008R:G 0 3 '9'3009R:C 0 4 '9'3114R:G 0 5 '9'3115R:C 0 6 '9'3116R:C 0 7 '9'3117R:G 0 [Edges] 0 {'9'3006R:C -> '9'3007R:G: adjacent_5p } 0 1 {'9'3007R:G -> '9'3006R:C: adjacent_3p } 0 2 {'9'3006R:C -> '9'3117R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3117R:G -> '9'3006R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3007R:G -> '9'3008R:G: adjacent_5p upward } 0 5 {'9'3008R:G -> '9'3007R:G: adjacent_3p downward } 0 6 {'9'3007R:G -> '9'3116R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3116R:C -> '9'3007R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3007R:G -> '9'3117R:G: outward } 0 9 {'9'3117R:G -> '9'3007R:G: outward } 0 10 {'9'3008R:G -> '9'3009R:C: adjacent_5p upward } 0 11 {'9'3009R:C -> '9'3008R:G: adjacent_3p downward } 0 12 {'9'3008R:G -> '9'3115R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'9'3115R:C -> '9'3008R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'9'3009R:C -> '9'3114R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {'9'3114R:G -> '9'3009R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {'9'3114R:G -> '9'3115R:C: adjacent_5p upward } 0 17 {'9'3115R:C -> '9'3114R:G: adjacent_3p downward } 0 18 {'9'3115R:C -> '9'3116R:C: adjacent_5p upward } 0 19 {'9'3116R:C -> '9'3115R:C: adjacent_3p downward } 0 20 {'9'3116R:C -> '9'3117R:G: adjacent_5p } 0 21 {'9'3117R:G -> '9'3116R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '9'3016R:G 0 1 '9'3017R:G 0 2 '9'3018R:U 0 3 '9'3019R:G 0 4 '9'3061R:C 0 5 '9'3062R:A 0 6 '9'3063R:C 0 7 '9'3064R:C 0 [Edges] 0 {'9'3016R:G -> '9'3017R:G: adjacent_5p upward } 0 1 {'9'3017R:G -> '9'3016R:G: adjacent_3p downward } 0 2 {'9'3016R:G -> '9'3064R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3064R:C -> '9'3016R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3017R:G -> '9'3018R:U: adjacent_5p upward } 0 5 {'9'3018R:U -> '9'3017R:G: adjacent_3p downward } 0 6 {'9'3017R:G -> '9'3063R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3063R:C -> '9'3017R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3018R:U -> '9'3019R:G: adjacent_5p upward } 0 9 {'9'3019R:G -> '9'3018R:U: adjacent_3p downward } 0 10 {'9'3018R:U -> '9'3062R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'9'3062R:A -> '9'3018R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'9'3019R:G -> '9'3061R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'9'3061R:C -> '9'3019R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'9'3019R:G -> '9'3062R:A: outward } 0 15 {'9'3062R:A -> '9'3019R:G: outward } 0 16 {'9'3061R:C -> '9'3062R:A: adjacent_5p } 0 17 {'9'3062R:A -> '9'3061R:C: adjacent_3p } 0 18 {'9'3062R:A -> '9'3063R:C: adjacent_5p upward } 0 19 {'9'3063R:C -> '9'3062R:A: adjacent_3p downward } 0 20 {'9'3063R:C -> '9'3064R:C: adjacent_5p } 0 21 {'9'3064R:C -> '9'3063R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '9'3017R:G 0 1 '9'3018R:U 0 2 '9'3019R:G 0 3 '9'3020R:G 0 4 '9'3060R:C 0 5 '9'3061R:C 0 6 '9'3062R:A 0 7 '9'3063R:C 0 [Edges] 0 {'9'3017R:G -> '9'3018R:U: adjacent_5p upward } 0 1 {'9'3018R:U -> '9'3017R:G: adjacent_3p downward } 0 2 {'9'3017R:G -> '9'3063R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3063R:C -> '9'3017R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3018R:U -> '9'3019R:G: adjacent_5p upward } 0 5 {'9'3019R:G -> '9'3018R:U: adjacent_3p downward } 0 6 {'9'3018R:U -> '9'3062R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'9'3062R:A -> '9'3018R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'9'3019R:G -> '9'3020R:G: adjacent_5p upward } 0 9 {'9'3020R:G -> '9'3019R:G: adjacent_3p downward } 0 10 {'9'3019R:G -> '9'3061R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'9'3061R:C -> '9'3019R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'9'3019R:G -> '9'3062R:A: outward } 0 13 {'9'3062R:A -> '9'3019R:G: outward } 0 14 {'9'3020R:G -> '9'3060R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'9'3060R:C -> '9'3020R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'9'3060R:C -> '9'3061R:C: adjacent_5p upward } 0 17 {'9'3061R:C -> '9'3060R:C: adjacent_3p downward } 0 18 {'9'3061R:C -> '9'3062R:A: adjacent_5p } 0 19 {'9'3062R:A -> '9'3061R:C: adjacent_3p } 0 20 {'9'3062R:A -> '9'3063R:C: adjacent_5p upward } 0 21 {'9'3063R:C -> '9'3062R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '9'3018R:U 0 1 '9'3019R:G 0 2 '9'3020R:G 0 3 '9'3021R:G 0 4 '9'3059R:C 0 5 '9'3060R:C 0 6 '9'3061R:C 0 7 '9'3062R:A 0 [Edges] 0 {'9'3018R:U -> '9'3019R:G: adjacent_5p upward } 0 1 {'9'3019R:G -> '9'3018R:U: adjacent_3p downward } 0 2 {'9'3018R:U -> '9'3062R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'9'3062R:A -> '9'3018R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'9'3019R:G -> '9'3020R:G: adjacent_5p upward } 0 5 {'9'3020R:G -> '9'3019R:G: adjacent_3p downward } 0 6 {'9'3019R:G -> '9'3061R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3061R:C -> '9'3019R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3019R:G -> '9'3062R:A: outward } 0 9 {'9'3062R:A -> '9'3019R:G: outward } 0 10 {'9'3020R:G -> '9'3021R:G: adjacent_5p upward } 0 11 {'9'3021R:G -> '9'3020R:G: adjacent_3p downward } 0 12 {'9'3020R:G -> '9'3060R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'9'3060R:C -> '9'3020R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'9'3021R:G -> '9'3059R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'9'3059R:C -> '9'3021R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'9'3059R:C -> '9'3060R:C: adjacent_5p upward } 0 17 {'9'3060R:C -> '9'3059R:C: adjacent_3p downward } 0 18 {'9'3060R:C -> '9'3061R:C: adjacent_5p upward } 0 19 {'9'3061R:C -> '9'3060R:C: adjacent_3p downward } 0 20 {'9'3061R:C -> '9'3062R:A: adjacent_5p } 0 21 {'9'3062R:A -> '9'3061R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '9'3027R:C 0 1 '9'3028R:U 0 2 '9'3029R:C 0 3 '9'3030R:C 0 4 '9'3052R:A 0 5 '9'3053R:G 0 6 '9'3054R:A 0 7 '9'3055R:U 0 [Edges] 0 {'9'3027R:C -> '9'3028R:U: adjacent_5p upward } 0 1 {'9'3028R:U -> '9'3027R:C: adjacent_3p downward } 0 2 {'9'3027R:C -> '9'3055R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {'9'3055R:U -> '9'3027R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {'9'3028R:U -> '9'3029R:C: adjacent_5p upward } 0 5 {'9'3029R:C -> '9'3028R:U: adjacent_3p downward } 0 6 {'9'3028R:U -> '9'3054R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'9'3054R:A -> '9'3028R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'9'3029R:C -> '9'3030R:C: adjacent_5p upward } 0 9 {'9'3030R:C -> '9'3029R:C: adjacent_3p downward } 0 10 {'9'3029R:C -> '9'3053R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'9'3053R:G -> '9'3029R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'9'3030R:C -> '9'3052R:A: pairing antiparallel cis one_hbond Bs/Wh } 0 13 {'9'3052R:A -> '9'3030R:C: pairing antiparallel cis one_hbond Wh/Bs } 0 14 {'9'3052R:A -> '9'3053R:G: adjacent_5p upward } 0 15 {'9'3053R:G -> '9'3052R:A: adjacent_3p downward } 0 16 {'9'3053R:G -> '9'3054R:A: adjacent_5p upward } 0 17 {'9'3054R:A -> '9'3053R:G: adjacent_3p downward } 0 18 {'9'3054R:A -> '9'3055R:U: adjacent_5p upward } 0 19 {'9'3055R:U -> '9'3054R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '9'3030R:C 0 1 '9'3031R:C 0 2 '9'3032R:G 0 3 '9'3033R:U 0 4 '9'3047R:A 0 5 '9'3048R:C 0 6 '9'3049R:G 0 7 '9'3050R:G 0 [Edges] 0 {'9'3030R:C -> '9'3031R:C: adjacent_5p } 0 1 {'9'3031R:C -> '9'3030R:C: adjacent_3p } 0 2 {'9'3030R:C -> '9'3050R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3050R:G -> '9'3030R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3031R:C -> '9'3032R:G: adjacent_5p upward } 0 5 {'9'3032R:G -> '9'3031R:C: adjacent_3p downward } 0 6 {'9'3031R:C -> '9'3049R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3049R:G -> '9'3031R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3032R:G -> '9'3033R:U: adjacent_5p upward } 0 9 {'9'3033R:U -> '9'3032R:G: adjacent_3p downward } 0 10 {'9'3032R:G -> '9'3048R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'9'3048R:C -> '9'3032R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'9'3032R:G -> '9'3049R:G: outward } 0 13 {'9'3049R:G -> '9'3032R:G: outward } 0 14 {'9'3033R:U -> '9'3047R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {'9'3047R:A -> '9'3033R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {'9'3047R:A -> '9'3048R:C: adjacent_5p upward } 0 17 {'9'3048R:C -> '9'3047R:A: adjacent_3p downward } 0 18 {'9'3048R:C -> '9'3049R:G: adjacent_5p upward } 0 19 {'9'3049R:G -> '9'3048R:C: adjacent_3p downward } 0 20 {'9'3049R:G -> '9'3050R:G: adjacent_5p upward } 0 21 {'9'3050R:G -> '9'3049R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '9'3035R:C 0 1 '9'3036R:C 0 2 '9'3037R:C 0 3 '9'3038R:A 0 4 '9'3045R:A 0 5 '9'3046R:C 0 6 '9'3047R:A 0 7 '9'3048R:C 0 [Edges] 0 {'9'3035R:C -> '9'3036R:C: adjacent_5p } 0 1 {'9'3036R:C -> '9'3035R:C: adjacent_3p } 0 2 {'9'3035R:C -> '9'3048R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 3 {'9'3048R:C -> '9'3035R:C: pairing antiparallel cis one_hbond Ss/Wh } 0 4 {'9'3036R:C -> '9'3037R:C: adjacent_5p upward } 0 5 {'9'3037R:C -> '9'3036R:C: adjacent_3p downward } 0 6 {'9'3036R:C -> '9'3047R:A: pairing antiparallel cis one_hbond 74 Wh/Ss } 0 7 {'9'3047R:A -> '9'3036R:C: pairing antiparallel cis one_hbond 74 Ss/Wh } 0 8 {'9'3037R:C -> '9'3038R:A: adjacent_5p upward } 0 9 {'9'3038R:A -> '9'3037R:C: adjacent_3p downward } 0 10 {'9'3038R:A -> '9'3045R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 11 {'9'3045R:A -> '9'3038R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 12 {'9'3045R:A -> '9'3046R:C: adjacent_5p upward } 0 13 {'9'3046R:C -> '9'3045R:A: adjacent_3p downward } 0 14 {'9'3046R:C -> '9'3047R:A: adjacent_5p upward } 0 15 {'9'3047R:A -> '9'3046R:C: adjacent_3p downward } 0 16 {'9'3047R:A -> '9'3048R:C: adjacent_5p upward } 0 17 {'9'3048R:C -> '9'3047R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 '9'3069R:U 0 1 '9'3070R:U 0 2 '9'3071R:C 0 3 '9'3072R:C 0 4 '9'3109R:G 0 5 '9'3110R:G 0 6 '9'3111R:U 0 7 '9'3112R:U 0 [Edges] 0 {'9'3069R:U -> '9'3070R:U: adjacent_5p } 0 1 {'9'3070R:U -> '9'3069R:U: adjacent_3p } 0 2 {'9'3069R:U -> '9'3112R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {'9'3112R:U -> '9'3069R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {'9'3070R:U -> '9'3071R:C: adjacent_5p upward } 0 5 {'9'3071R:C -> '9'3070R:U: adjacent_3p downward } 0 6 {'9'3070R:U -> '9'3111R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {'9'3111R:U -> '9'3070R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {'9'3071R:C -> '9'3072R:C: adjacent_5p upward } 0 9 {'9'3072R:C -> '9'3071R:C: adjacent_3p downward } 0 10 {'9'3071R:C -> '9'3110R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'9'3110R:G -> '9'3071R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'9'3072R:C -> '9'3109R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'9'3109R:G -> '9'3072R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'9'3109R:G -> '9'3110R:G: adjacent_5p upward } 0 15 {'9'3110R:G -> '9'3109R:G: adjacent_3p downward } 0 16 {'9'3110R:G -> '9'3111R:U: adjacent_5p upward } 0 17 {'9'3111R:U -> '9'3110R:G: adjacent_3p downward } 0 18 {'9'3111R:U -> '9'3112R:U: adjacent_5p upward } 0 19 {'9'3112R:U -> '9'3111R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '9'3070R:U 0 1 '9'3071R:C 0 2 '9'3072R:C 0 3 '9'3073R:G 0 4 '9'3108R:C 0 5 '9'3109R:G 0 6 '9'3110R:G 0 7 '9'3111R:U 0 [Edges] 0 {'9'3070R:U -> '9'3071R:C: adjacent_5p upward } 0 1 {'9'3071R:C -> '9'3070R:U: adjacent_3p downward } 0 2 {'9'3070R:U -> '9'3111R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {'9'3111R:U -> '9'3070R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {'9'3071R:C -> '9'3072R:C: adjacent_5p upward } 0 5 {'9'3072R:C -> '9'3071R:C: adjacent_3p downward } 0 6 {'9'3071R:C -> '9'3110R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3110R:G -> '9'3071R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3072R:C -> '9'3073R:G: adjacent_5p } 0 9 {'9'3073R:G -> '9'3072R:C: adjacent_3p } 0 10 {'9'3072R:C -> '9'3109R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'9'3109R:G -> '9'3072R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'9'3073R:G -> '9'3108R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'9'3108R:C -> '9'3073R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'9'3073R:G -> '9'3109R:G: outward } 0 15 {'9'3109R:G -> '9'3073R:G: outward } 0 16 {'9'3108R:C -> '9'3109R:G: adjacent_5p upward } 0 17 {'9'3109R:G -> '9'3108R:C: adjacent_3p downward } 0 18 {'9'3109R:G -> '9'3110R:G: adjacent_5p upward } 0 19 {'9'3110R:G -> '9'3109R:G: adjacent_3p downward } 0 20 {'9'3110R:G -> '9'3111R:U: adjacent_5p upward } 0 21 {'9'3111R:U -> '9'3110R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '9'3071R:C 0 1 '9'3072R:C 0 2 '9'3073R:G 0 3 '9'3074R:G 0 4 '9'3107R:C 0 5 '9'3108R:C 0 6 '9'3109R:G 0 7 '9'3110R:G 0 [Edges] 0 {'9'3071R:C -> '9'3072R:C: adjacent_5p upward } 0 1 {'9'3072R:C -> '9'3071R:C: adjacent_3p downward } 0 2 {'9'3071R:C -> '9'3110R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3110R:G -> '9'3071R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3072R:C -> '9'3073R:G: adjacent_5p } 0 5 {'9'3073R:G -> '9'3072R:C: adjacent_3p } 0 6 {'9'3072R:C -> '9'3109R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3109R:G -> '9'3072R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3073R:G -> '9'3074R:G: adjacent_5p upward } 0 9 {'9'3074R:G -> '9'3073R:G: adjacent_3p downward } 0 10 {'9'3073R:G -> '9'3108R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'9'3108R:C -> '9'3073R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'9'3073R:G -> '9'3109R:G: outward } 0 13 {'9'3109R:G -> '9'3073R:G: outward } 0 14 {'9'3074R:G -> '9'3107R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'9'3107R:C -> '9'3074R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'9'3107R:C -> '9'3108R:C: adjacent_5p upward } 0 17 {'9'3108R:C -> '9'3107R:C: adjacent_3p downward } 0 18 {'9'3108R:C -> '9'3109R:G: adjacent_5p upward } 0 19 {'9'3109R:G -> '9'3108R:C: adjacent_3p downward } 0 20 {'9'3109R:G -> '9'3110R:G: adjacent_5p upward } 0 21 {'9'3110R:G -> '9'3109R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '9'3072R:C 0 1 '9'3073R:G 0 2 '9'3074R:G 0 3 '9'3075R:G 0 4 '9'3106R:C 0 5 '9'3107R:C 0 6 '9'3108R:C 0 7 '9'3109R:G 0 [Edges] 0 {'9'3072R:C -> '9'3073R:G: adjacent_5p } 0 1 {'9'3073R:G -> '9'3072R:C: adjacent_3p } 0 2 {'9'3072R:C -> '9'3109R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3109R:G -> '9'3072R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3073R:G -> '9'3074R:G: adjacent_5p upward } 0 5 {'9'3074R:G -> '9'3073R:G: adjacent_3p downward } 0 6 {'9'3073R:G -> '9'3108R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3108R:C -> '9'3073R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3073R:G -> '9'3109R:G: outward } 0 9 {'9'3109R:G -> '9'3073R:G: outward } 0 10 {'9'3074R:G -> '9'3075R:G: adjacent_5p upward } 0 11 {'9'3075R:G -> '9'3074R:G: adjacent_3p downward } 0 12 {'9'3074R:G -> '9'3107R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'9'3107R:C -> '9'3074R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'9'3075R:G -> '9'3106R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'9'3106R:C -> '9'3075R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'9'3106R:C -> '9'3107R:C: adjacent_5p upward } 0 17 {'9'3107R:C -> '9'3106R:C: adjacent_3p downward } 0 18 {'9'3107R:C -> '9'3108R:C: adjacent_5p upward } 0 19 {'9'3108R:C -> '9'3107R:C: adjacent_3p downward } 0 20 {'9'3108R:C -> '9'3109R:G: adjacent_5p upward } 0 21 {'9'3109R:G -> '9'3108R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '9'3073R:G 0 1 '9'3074R:G 0 2 '9'3075R:G 0 3 '9'3076R:G 0 4 '9'3105R:A 0 5 '9'3106R:C 0 6 '9'3107R:C 0 7 '9'3108R:C 0 [Edges] 0 {'9'3073R:G -> '9'3074R:G: adjacent_5p upward } 0 1 {'9'3074R:G -> '9'3073R:G: adjacent_3p downward } 0 2 {'9'3073R:G -> '9'3108R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3108R:C -> '9'3073R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3074R:G -> '9'3075R:G: adjacent_5p upward } 0 5 {'9'3075R:G -> '9'3074R:G: adjacent_3p downward } 0 6 {'9'3074R:G -> '9'3107R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3107R:C -> '9'3074R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3075R:G -> '9'3076R:G: adjacent_5p upward } 0 9 {'9'3076R:G -> '9'3075R:G: adjacent_3p downward } 0 10 {'9'3075R:G -> '9'3106R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {'9'3106R:C -> '9'3075R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {'9'3076R:G -> '9'3105R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {'9'3105R:A -> '9'3076R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {'9'3105R:A -> '9'3106R:C: adjacent_5p upward } 0 15 {'9'3106R:C -> '9'3105R:A: adjacent_3p downward } 0 16 {'9'3106R:C -> '9'3107R:C: adjacent_5p upward } 0 17 {'9'3107R:C -> '9'3106R:C: adjacent_3p downward } 0 18 {'9'3107R:C -> '9'3108R:C: adjacent_5p upward } 0 19 {'9'3108R:C -> '9'3107R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '9'3074R:G 0 1 '9'3075R:G 0 2 '9'3076R:G 0 3 '9'3077R:A 0 4 '9'3104R:A 0 5 '9'3105R:A 0 6 '9'3106R:C 0 7 '9'3107R:C 0 [Edges] 0 {'9'3074R:G -> '9'3075R:G: adjacent_5p upward } 0 1 {'9'3075R:G -> '9'3074R:G: adjacent_3p downward } 0 2 {'9'3074R:G -> '9'3107R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3107R:C -> '9'3074R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3075R:G -> '9'3076R:G: adjacent_5p upward } 0 5 {'9'3076R:G -> '9'3075R:G: adjacent_3p downward } 0 6 {'9'3075R:G -> '9'3106R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3106R:C -> '9'3075R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3076R:G -> '9'3077R:A: adjacent_5p inward } 0 9 {'9'3077R:A -> '9'3076R:G: adjacent_3p inward } 0 10 {'9'3076R:G -> '9'3105R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {'9'3105R:A -> '9'3076R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {'9'3077R:A -> '9'3104R:A: pairing parallel trans II Hh/Hh } 0 13 {'9'3104R:A -> '9'3077R:A: pairing parallel trans II Hh/Hh } 0 14 {'9'3104R:A -> '9'3105R:A: adjacent_5p upward } 0 15 {'9'3105R:A -> '9'3104R:A: adjacent_3p downward } 0 16 {'9'3105R:A -> '9'3106R:C: adjacent_5p upward } 0 17 {'9'3106R:C -> '9'3105R:A: adjacent_3p downward } 0 18 {'9'3106R:C -> '9'3107R:C: adjacent_5p upward } 0 19 {'9'3107R:C -> '9'3106R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '9'3079R:U 0 1 '9'3080R:A 0 2 '9'3081R:C 0 3 '9'3082R:U 0 4 '9'3100R:G 0 5 '9'3101R:G 0 6 '9'3102R:G 0 7 '9'3103R:A 0 [Edges] 0 {'9'3079R:U -> '9'3080R:A: adjacent_5p upward } 0 1 {'9'3080R:A -> '9'3079R:U: adjacent_3p downward } 0 2 {'9'3079R:U -> '9'3103R:A: pairing antiparallel trans XXIV Ww/Hh } 0 3 {'9'3103R:A -> '9'3079R:U: pairing antiparallel trans XXIV Hh/Ww } 0 4 {'9'3080R:A -> '9'3081R:C: adjacent_5p upward } 0 5 {'9'3081R:C -> '9'3080R:A: adjacent_3p downward } 0 6 {'9'3080R:A -> '9'3102R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {'9'3102R:G -> '9'3080R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {'9'3080R:A -> '9'3103R:A: outward } 0 9 {'9'3103R:A -> '9'3080R:A: outward } 0 10 {'9'3081R:C -> '9'3082R:U: adjacent_5p upward } 0 11 {'9'3082R:U -> '9'3081R:C: adjacent_3p downward } 0 12 {'9'3081R:C -> '9'3101R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'9'3101R:G -> '9'3081R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'9'3082R:U -> '9'3100R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {'9'3100R:G -> '9'3082R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {'9'3100R:G -> '9'3101R:G: adjacent_5p upward } 0 17 {'9'3101R:G -> '9'3100R:G: adjacent_3p downward } 0 18 {'9'3101R:G -> '9'3102R:G: adjacent_5p upward } 0 19 {'9'3102R:G -> '9'3101R:G: adjacent_3p downward } 0 20 {'9'3102R:G -> '9'3103R:A: adjacent_5p } 0 21 {'9'3103R:A -> '9'3102R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '9'3080R:A 0 1 '9'3081R:C 0 2 '9'3082R:U 0 3 '9'3083R:G 0 4 '9'3099R:U 0 5 '9'3100R:G 0 6 '9'3101R:G 0 7 '9'3102R:G 0 [Edges] 0 {'9'3080R:A -> '9'3081R:C: adjacent_5p upward } 0 1 {'9'3081R:C -> '9'3080R:A: adjacent_3p downward } 0 2 {'9'3080R:A -> '9'3102R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'9'3102R:G -> '9'3080R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'9'3081R:C -> '9'3082R:U: adjacent_5p upward } 0 5 {'9'3082R:U -> '9'3081R:C: adjacent_3p downward } 0 6 {'9'3081R:C -> '9'3101R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3101R:G -> '9'3081R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3082R:U -> '9'3083R:G: adjacent_5p } 0 9 {'9'3083R:G -> '9'3082R:U: adjacent_3p } 0 10 {'9'3082R:U -> '9'3100R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {'9'3100R:G -> '9'3082R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {'9'3083R:G -> '9'3099R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {'9'3099R:U -> '9'3083R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {'9'3083R:G -> '9'3100R:G: outward } 0 15 {'9'3100R:G -> '9'3083R:G: outward } 0 16 {'9'3099R:U -> '9'3100R:G: adjacent_5p } 0 17 {'9'3100R:G -> '9'3099R:U: adjacent_3p } 0 18 {'9'3100R:G -> '9'3101R:G: adjacent_5p upward } 0 19 {'9'3101R:G -> '9'3100R:G: adjacent_3p downward } 0 20 {'9'3101R:G -> '9'3102R:G: adjacent_5p upward } 0 21 {'9'3102R:G -> '9'3101R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '9'3081R:C 0 1 '9'3082R:U 0 2 '9'3083R:G 0 3 '9'3084R:G 0 4 '9'3098R:C 0 5 '9'3099R:U 0 6 '9'3100R:G 0 7 '9'3101R:G 0 [Edges] 0 {'9'3081R:C -> '9'3082R:U: adjacent_5p upward } 0 1 {'9'3082R:U -> '9'3081R:C: adjacent_3p downward } 0 2 {'9'3081R:C -> '9'3101R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3101R:G -> '9'3081R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3082R:U -> '9'3083R:G: adjacent_5p } 0 5 {'9'3083R:G -> '9'3082R:U: adjacent_3p } 0 6 {'9'3082R:U -> '9'3100R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {'9'3100R:G -> '9'3082R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {'9'3083R:G -> '9'3084R:G: adjacent_5p upward } 0 9 {'9'3084R:G -> '9'3083R:G: adjacent_3p downward } 0 10 {'9'3083R:G -> '9'3099R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'9'3099R:U -> '9'3083R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'9'3083R:G -> '9'3100R:G: outward } 0 13 {'9'3100R:G -> '9'3083R:G: outward } 0 14 {'9'3084R:G -> '9'3098R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'9'3098R:C -> '9'3084R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'9'3098R:C -> '9'3099R:U: adjacent_5p upward } 0 17 {'9'3099R:U -> '9'3098R:C: adjacent_3p downward } 0 18 {'9'3099R:U -> '9'3100R:G: adjacent_5p } 0 19 {'9'3100R:G -> '9'3099R:U: adjacent_3p } 0 20 {'9'3100R:G -> '9'3101R:G: adjacent_5p upward } 0 21 {'9'3101R:G -> '9'3100R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '9'3082R:U 0 1 '9'3083R:G 0 2 '9'3084R:G 0 3 '9'3085R:A 0 4 '9'3097R:U 0 5 '9'3098R:C 0 6 '9'3099R:U 0 7 '9'3100R:G 0 [Edges] 0 {'9'3082R:U -> '9'3083R:G: adjacent_5p } 0 1 {'9'3083R:G -> '9'3082R:U: adjacent_3p } 0 2 {'9'3082R:U -> '9'3100R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'9'3100R:G -> '9'3082R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'9'3083R:G -> '9'3084R:G: adjacent_5p upward } 0 5 {'9'3084R:G -> '9'3083R:G: adjacent_3p downward } 0 6 {'9'3083R:G -> '9'3099R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'9'3099R:U -> '9'3083R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'9'3083R:G -> '9'3100R:G: outward } 0 9 {'9'3100R:G -> '9'3083R:G: outward } 0 10 {'9'3084R:G -> '9'3085R:A: adjacent_5p upward } 0 11 {'9'3085R:A -> '9'3084R:G: adjacent_3p downward } 0 12 {'9'3084R:G -> '9'3098R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'9'3098R:C -> '9'3084R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'9'3085R:A -> '9'3097R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {'9'3097R:U -> '9'3085R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {'9'3097R:U -> '9'3098R:C: adjacent_5p upward } 0 17 {'9'3098R:C -> '9'3097R:U: adjacent_3p downward } 0 18 {'9'3098R:C -> '9'3099R:U: adjacent_5p upward } 0 19 {'9'3099R:U -> '9'3098R:C: adjacent_3p downward } 0 20 {'9'3099R:U -> '9'3100R:G: adjacent_5p } 0 21 {'9'3100R:G -> '9'3099R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 '9'3083R:G 0 1 '9'3084R:G 0 2 '9'3085R:A 0 3 '9'3086R:G 0 4 '9'3096R:C 0 5 '9'3097R:U 0 6 '9'3098R:C 0 7 '9'3099R:U 0 [Edges] 0 {'9'3083R:G -> '9'3084R:G: adjacent_5p upward } 0 1 {'9'3084R:G -> '9'3083R:G: adjacent_3p downward } 0 2 {'9'3083R:G -> '9'3099R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'9'3099R:U -> '9'3083R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'9'3084R:G -> '9'3085R:A: adjacent_5p upward } 0 5 {'9'3085R:A -> '9'3084R:G: adjacent_3p downward } 0 6 {'9'3084R:G -> '9'3098R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3098R:C -> '9'3084R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3085R:A -> '9'3086R:G: adjacent_5p upward } 0 9 {'9'3086R:G -> '9'3085R:A: adjacent_3p downward } 0 10 {'9'3085R:A -> '9'3097R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {'9'3097R:U -> '9'3085R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {'9'3086R:G -> '9'3096R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'9'3096R:C -> '9'3086R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'9'3096R:C -> '9'3097R:U: adjacent_5p upward } 0 15 {'9'3097R:U -> '9'3096R:C: adjacent_3p downward } 0 16 {'9'3097R:U -> '9'3098R:C: adjacent_5p upward } 0 17 {'9'3098R:C -> '9'3097R:U: adjacent_3p downward } 0 18 {'9'3098R:C -> '9'3099R:U: adjacent_5p upward } 0 19 {'9'3099R:U -> '9'3098R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:U 0 3 A5R:U 0 4 A13R:A 0 5 A14R:A 0 6 A15R:G 0 7 A16R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A16R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A15R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:U -> A5R:U: adjacent_5p } 0 9 {A5R:U -> A4R:U: adjacent_3p } 0 10 {A4R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A14R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A13R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A13R:A -> A14R:A: adjacent_5p upward } 0 15 {A14R:A -> A13R:A: adjacent_3p downward } 0 16 {A14R:A -> A15R:G: adjacent_5p upward } 0 17 {A15R:G -> A14R:A: adjacent_3p downward } 0 18 {A15R:G -> A16R:C: adjacent_5p upward } 0 19 {A16R:C -> A15R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:U 0 2 A5R:U 0 3 A6R:U 0 4 A12R:A 0 5 A13R:A 0 6 A14R:A 0 7 A15R:G 0 [Edges] 0 {A3R:C -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A15R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:U -> A5R:U: adjacent_5p } 0 5 {A5R:U -> A4R:U: adjacent_3p } 0 6 {A4R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A14R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:U -> A6R:U: adjacent_5p upward } 0 9 {A6R:U -> A5R:U: adjacent_3p downward } 0 10 {A5R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A13R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A12R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A12R:A -> A13R:A: adjacent_5p upward } 0 15 {A13R:A -> A12R:A: adjacent_3p downward } 0 16 {A13R:A -> A14R:A: adjacent_5p upward } 0 17 {A14R:A -> A13R:A: adjacent_3p downward } 0 18 {A14R:A -> A15R:G: adjacent_5p upward } 0 19 {A15R:G -> A14R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:U 0 2 A6R:U 0 3 A7R:G 0 4 A11R:A 0 5 A12R:A 0 6 A13R:A 0 7 A14R:A 0 [Edges] 0 {A4R:U -> A5R:U: adjacent_5p } 0 1 {A5R:U -> A4R:U: adjacent_3p } 0 2 {A4R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A14R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:U -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A13R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:U -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:U: adjacent_3p downward } 0 10 {A6R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A12R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:G -> A11R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A11R:A -> A7R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A11R:A -> A12R:A: adjacent_5p upward } 0 15 {A12R:A -> A11R:A: adjacent_3p downward } 0 16 {A12R:A -> A13R:A: adjacent_5p upward } 0 17 {A13R:A -> A12R:A: adjacent_3p downward } 0 18 {A13R:A -> A14R:A: adjacent_5p upward } 0 19 {A14R:A -> A13R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B905R:G 0 1 B906R:G 0 2 B907R:G 0 3 B908R:C 0 4 C917R:G 0 5 C918R:C 0 6 C919R:C 0 7 C920R:C 0 [Edges] 0 {B905R:G -> B906R:G: adjacent_5p upward } 0 1 {B906R:G -> B905R:G: adjacent_3p downward } 0 2 {B905R:G -> C920R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C920R:C -> B905R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B906R:G -> B907R:G: adjacent_5p } 0 5 {B907R:G -> B906R:G: adjacent_3p } 0 6 {B906R:G -> C919R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C919R:C -> B906R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B907R:G -> B908R:C: adjacent_5p upward } 0 9 {B908R:C -> B907R:G: adjacent_3p downward } 0 10 {B908R:C -> C917R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C917R:G -> B908R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C917R:G -> C918R:C: adjacent_5p upward } 0 13 {C918R:C -> C917R:G: adjacent_3p downward } 0 14 {C918R:C -> C919R:C: adjacent_5p upward } 0 15 {C919R:C -> C918R:C: adjacent_3p downward } 0 16 {C919R:C -> C920R:C: adjacent_5p upward } 0 17 {C920R:C -> C919R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 E14R:G 0 1 E15R:C 0 2 E16R:G 0 3 E17R:U 0 4 E31R:A 0 5 E32R:C 0 6 E33R:G 0 7 E34R:C 0 [Edges] 0 {E14R:G -> E15R:C: adjacent_5p upward } 0 1 {E15R:C -> E14R:G: adjacent_3p downward } 0 2 {E14R:G -> E34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E34R:C -> E14R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E15R:C -> E16R:G: adjacent_5p upward } 0 5 {E16R:G -> E15R:C: adjacent_3p downward } 0 6 {E15R:C -> E33R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E33R:G -> E15R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E16R:G -> E17R:U: adjacent_5p upward } 0 9 {E17R:U -> E16R:G: adjacent_3p downward } 0 10 {E16R:G -> E32R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E32R:C -> E16R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E16R:G -> E33R:G: outward } 0 13 {E33R:G -> E16R:G: outward } 0 14 {E17R:U -> E31R:A: pairing parallel cis one_hbond 51 Wh/Wh } 0 15 {E31R:A -> E17R:U: pairing parallel cis one_hbond 51 Wh/Wh } 0 16 {E31R:A -> E32R:C: adjacent_5p outward } 0 17 {E32R:C -> E31R:A: adjacent_3p outward } 0 18 {E32R:C -> E33R:G: adjacent_5p } 0 19 {E33R:G -> E32R:C: adjacent_3p } 0 20 {E33R:G -> E34R:C: adjacent_5p upward } 0 21 {E34R:C -> E33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E15R:C 0 1 E16R:G 0 2 E17R:U 0 3 E18R:U 0 4 E30R:A 0 5 E31R:A 0 6 E32R:C 0 7 E33R:G 0 [Edges] 0 {E15R:C -> E16R:G: adjacent_5p upward } 0 1 {E16R:G -> E15R:C: adjacent_3p downward } 0 2 {E15R:C -> E33R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E33R:G -> E15R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E16R:G -> E17R:U: adjacent_5p upward } 0 5 {E17R:U -> E16R:G: adjacent_3p downward } 0 6 {E16R:G -> E32R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E32R:C -> E16R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E16R:G -> E33R:G: outward } 0 9 {E33R:G -> E16R:G: outward } 0 10 {E17R:U -> E18R:U: adjacent_5p } 0 11 {E18R:U -> E17R:U: adjacent_3p } 0 12 {E17R:U -> E31R:A: pairing parallel cis one_hbond 51 Wh/Wh } 0 13 {E31R:A -> E17R:U: pairing parallel cis one_hbond 51 Wh/Wh } 0 14 {E18R:U -> E30R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {E30R:A -> E18R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {E30R:A -> E31R:A: adjacent_5p inward } 0 17 {E31R:A -> E30R:A: adjacent_3p inward } 0 18 {E31R:A -> E32R:C: adjacent_5p outward } 0 19 {E32R:C -> E31R:A: adjacent_3p outward } 0 20 {E32R:C -> E33R:G: adjacent_5p } 0 21 {E33R:G -> E32R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 E16R:G 0 1 E17R:U 0 2 E18R:U 0 3 E19R:G 0 4 E29R:C 0 5 E30R:A 0 6 E31R:A 0 7 E32R:C 0 [Edges] 0 {E16R:G -> E17R:U: adjacent_5p upward } 0 1 {E17R:U -> E16R:G: adjacent_3p downward } 0 2 {E16R:G -> E32R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E32R:C -> E16R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E17R:U -> E18R:U: adjacent_5p } 0 5 {E18R:U -> E17R:U: adjacent_3p } 0 6 {E17R:U -> E31R:A: pairing parallel cis one_hbond 51 Wh/Wh } 0 7 {E31R:A -> E17R:U: pairing parallel cis one_hbond 51 Wh/Wh } 0 8 {E18R:U -> E19R:G: adjacent_5p } 0 9 {E19R:G -> E18R:U: adjacent_3p } 0 10 {E18R:U -> E30R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {E30R:A -> E18R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {E19R:G -> E29R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {E29R:C -> E19R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {E19R:G -> E30R:A: outward } 0 15 {E30R:A -> E19R:G: outward } 0 16 {E29R:C -> E30R:A: adjacent_5p upward } 0 17 {E30R:A -> E29R:C: adjacent_3p downward } 0 18 {E30R:A -> E31R:A: adjacent_5p inward } 0 19 {E31R:A -> E30R:A: adjacent_3p inward } 0 20 {E31R:A -> E32R:C: adjacent_5p outward } 0 21 {E32R:C -> E31R:A: adjacent_3p outward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E17R:U 0 1 E18R:U 0 2 E19R:G 0 3 E20R:C 0 4 E28R:G 0 5 E29R:C 0 6 E30R:A 0 7 E31R:A 0 [Edges] 0 {E17R:U -> E18R:U: adjacent_5p } 0 1 {E18R:U -> E17R:U: adjacent_3p } 0 2 {E17R:U -> E31R:A: pairing parallel cis one_hbond 51 Wh/Wh } 0 3 {E31R:A -> E17R:U: pairing parallel cis one_hbond 51 Wh/Wh } 0 4 {E18R:U -> E19R:G: adjacent_5p } 0 5 {E19R:G -> E18R:U: adjacent_3p } 0 6 {E18R:U -> E30R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {E30R:A -> E18R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {E19R:G -> E20R:C: adjacent_5p upward } 0 9 {E20R:C -> E19R:G: adjacent_3p downward } 0 10 {E19R:G -> E29R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E29R:C -> E19R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E19R:G -> E30R:A: outward } 0 13 {E30R:A -> E19R:G: outward } 0 14 {E20R:C -> E28R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {E28R:G -> E20R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {E28R:G -> E29R:C: adjacent_5p upward } 0 17 {E29R:C -> E28R:G: adjacent_3p downward } 0 18 {E29R:C -> E30R:A: adjacent_5p upward } 0 19 {E30R:A -> E29R:C: adjacent_3p downward } 0 20 {E30R:A -> E31R:A: adjacent_5p inward } 0 21 {E31R:A -> E30R:A: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 F14R:G 0 1 F15R:C 0 2 F16R:G 0 3 F17R:U 0 4 F31R:A 0 5 F32R:C 0 6 F33R:G 0 7 F34R:C 0 [Edges] 0 {F14R:G -> F15R:C: adjacent_5p upward } 0 1 {F15R:C -> F14R:G: adjacent_3p downward } 0 2 {F14R:G -> F34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {F34R:C -> F14R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {F15R:C -> F16R:G: adjacent_5p upward } 0 5 {F16R:G -> F15R:C: adjacent_3p downward } 0 6 {F15R:C -> F33R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {F33R:G -> F15R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {F16R:G -> F17R:U: adjacent_5p upward } 0 9 {F17R:U -> F16R:G: adjacent_3p downward } 0 10 {F16R:G -> F32R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {F32R:C -> F16R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {F16R:G -> F33R:G: outward } 0 13 {F33R:G -> F16R:G: outward } 0 14 {F17R:U -> F31R:A: pairing parallel cis one_hbond 51 Wh/Wh } 0 15 {F31R:A -> F17R:U: pairing parallel cis one_hbond 51 Wh/Wh } 0 16 {F31R:A -> F32R:C: adjacent_5p outward } 0 17 {F32R:C -> F31R:A: adjacent_3p outward } 0 18 {F32R:C -> F33R:G: adjacent_5p } 0 19 {F33R:G -> F32R:C: adjacent_3p } 0 20 {F33R:G -> F34R:C: adjacent_5p upward } 0 21 {F34R:C -> F33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 F15R:C 0 1 F16R:G 0 2 F17R:U 0 3 F18R:U 0 4 F30R:A 0 5 F31R:A 0 6 F32R:C 0 7 F33R:G 0 [Edges] 0 {F15R:C -> F16R:G: adjacent_5p upward } 0 1 {F16R:G -> F15R:C: adjacent_3p downward } 0 2 {F15R:C -> F33R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {F33R:G -> F15R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {F16R:G -> F17R:U: adjacent_5p upward } 0 5 {F17R:U -> F16R:G: adjacent_3p downward } 0 6 {F16R:G -> F32R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {F32R:C -> F16R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {F16R:G -> F33R:G: outward } 0 9 {F33R:G -> F16R:G: outward } 0 10 {F17R:U -> F18R:U: adjacent_5p upward } 0 11 {F18R:U -> F17R:U: adjacent_3p downward } 0 12 {F17R:U -> F31R:A: pairing parallel cis one_hbond 51 Wh/Wh } 0 13 {F31R:A -> F17R:U: pairing parallel cis one_hbond 51 Wh/Wh } 0 14 {F18R:U -> F30R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {F30R:A -> F18R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {F30R:A -> F31R:A: adjacent_5p inward } 0 17 {F31R:A -> F30R:A: adjacent_3p inward } 0 18 {F31R:A -> F32R:C: adjacent_5p outward } 0 19 {F32R:C -> F31R:A: adjacent_3p outward } 0 20 {F32R:C -> F33R:G: adjacent_5p } 0 21 {F33R:G -> F32R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 F16R:G 0 1 F17R:U 0 2 F18R:U 0 3 F19R:G 0 4 F29R:C 0 5 F30R:A 0 6 F31R:A 0 7 F32R:C 0 [Edges] 0 {F16R:G -> F17R:U: adjacent_5p upward } 0 1 {F17R:U -> F16R:G: adjacent_3p downward } 0 2 {F16R:G -> F32R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {F32R:C -> F16R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {F17R:U -> F18R:U: adjacent_5p upward } 0 5 {F18R:U -> F17R:U: adjacent_3p downward } 0 6 {F17R:U -> F31R:A: pairing parallel cis one_hbond 51 Wh/Wh } 0 7 {F31R:A -> F17R:U: pairing parallel cis one_hbond 51 Wh/Wh } 0 8 {F18R:U -> F19R:G: adjacent_5p } 0 9 {F19R:G -> F18R:U: adjacent_3p } 0 10 {F18R:U -> F30R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {F30R:A -> F18R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {F19R:G -> F29R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {F29R:C -> F19R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {F19R:G -> F30R:A: outward } 0 15 {F30R:A -> F19R:G: outward } 0 16 {F29R:C -> F30R:A: adjacent_5p } 0 17 {F30R:A -> F29R:C: adjacent_3p } 0 18 {F30R:A -> F31R:A: adjacent_5p inward } 0 19 {F31R:A -> F30R:A: adjacent_3p inward } 0 20 {F31R:A -> F32R:C: adjacent_5p outward } 0 21 {F32R:C -> F31R:A: adjacent_3p outward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 F17R:U 0 1 F18R:U 0 2 F19R:G 0 3 F20R:C 0 4 F28R:G 0 5 F29R:C 0 6 F30R:A 0 7 F31R:A 0 [Edges] 0 {F17R:U -> F18R:U: adjacent_5p upward } 0 1 {F18R:U -> F17R:U: adjacent_3p downward } 0 2 {F17R:U -> F31R:A: pairing parallel cis one_hbond 51 Wh/Wh } 0 3 {F31R:A -> F17R:U: pairing parallel cis one_hbond 51 Wh/Wh } 0 4 {F18R:U -> F19R:G: adjacent_5p } 0 5 {F19R:G -> F18R:U: adjacent_3p } 0 6 {F18R:U -> F30R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {F30R:A -> F18R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {F19R:G -> F20R:C: adjacent_5p upward } 0 9 {F20R:C -> F19R:G: adjacent_3p downward } 0 10 {F19R:G -> F29R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {F29R:C -> F19R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {F19R:G -> F30R:A: outward } 0 13 {F30R:A -> F19R:G: outward } 0 14 {F20R:C -> F28R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {F28R:G -> F20R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {F28R:G -> F29R:C: adjacent_5p upward } 0 17 {F29R:C -> F28R:G: adjacent_3p downward } 0 18 {F29R:C -> F30R:A: adjacent_5p } 0 19 {F30R:A -> F29R:C: adjacent_3p } 0 20 {F30R:A -> F31R:A: adjacent_5p inward } 0 21 {F31R:A -> F30R:A: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 G14R:G 0 1 G15R:C 0 2 G16R:G 0 3 G17R:U 0 4 G31R:A 0 5 G32R:C 0 6 G33R:G 0 7 G34R:C 0 [Edges] 0 {G14R:G -> G15R:C: adjacent_5p upward } 0 1 {G15R:C -> G14R:G: adjacent_3p downward } 0 2 {G14R:G -> G34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {G34R:C -> G14R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {G15R:C -> G16R:G: adjacent_5p } 0 5 {G16R:G -> G15R:C: adjacent_3p } 0 6 {G15R:C -> G33R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {G33R:G -> G15R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {G16R:G -> G17R:U: adjacent_5p upward } 0 9 {G17R:U -> G16R:G: adjacent_3p downward } 0 10 {G16R:G -> G32R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {G32R:C -> G16R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {G16R:G -> G33R:G: outward } 0 13 {G33R:G -> G16R:G: outward } 0 14 {G17R:U -> G31R:A: pairing parallel cis one_hbond 51 Wh/Wh } 0 15 {G31R:A -> G17R:U: pairing parallel cis one_hbond 51 Wh/Wh } 0 16 {G31R:A -> G32R:C: adjacent_5p outward } 0 17 {G32R:C -> G31R:A: adjacent_3p outward } 0 18 {G32R:C -> G33R:G: adjacent_5p } 0 19 {G33R:G -> G32R:C: adjacent_3p } 0 20 {G33R:G -> G34R:C: adjacent_5p upward } 0 21 {G34R:C -> G33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 G15R:C 0 1 G16R:G 0 2 G17R:U 0 3 G18R:U 0 4 G30R:A 0 5 G31R:A 0 6 G32R:C 0 7 G33R:G 0 [Edges] 0 {G15R:C -> G16R:G: adjacent_5p } 0 1 {G16R:G -> G15R:C: adjacent_3p } 0 2 {G15R:C -> G33R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {G33R:G -> G15R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {G16R:G -> G17R:U: adjacent_5p upward } 0 5 {G17R:U -> G16R:G: adjacent_3p downward } 0 6 {G16R:G -> G32R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {G32R:C -> G16R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {G16R:G -> G33R:G: outward } 0 9 {G33R:G -> G16R:G: outward } 0 10 {G17R:U -> G18R:U: adjacent_5p upward } 0 11 {G18R:U -> G17R:U: adjacent_3p downward } 0 12 {G17R:U -> G31R:A: pairing parallel cis one_hbond 51 Wh/Wh } 0 13 {G31R:A -> G17R:U: pairing parallel cis one_hbond 51 Wh/Wh } 0 14 {G18R:U -> G30R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {G30R:A -> G18R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {G30R:A -> G31R:A: adjacent_5p inward } 0 17 {G31R:A -> G30R:A: adjacent_3p inward } 0 18 {G31R:A -> G32R:C: adjacent_5p outward } 0 19 {G32R:C -> G31R:A: adjacent_3p outward } 0 20 {G32R:C -> G33R:G: adjacent_5p } 0 21 {G33R:G -> G32R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 G16R:G 0 1 G17R:U 0 2 G18R:U 0 3 G19R:G 0 4 G29R:C 0 5 G30R:A 0 6 G31R:A 0 7 G32R:C 0 [Edges] 0 {G16R:G -> G17R:U: adjacent_5p upward } 0 1 {G17R:U -> G16R:G: adjacent_3p downward } 0 2 {G16R:G -> G32R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {G32R:C -> G16R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {G17R:U -> G18R:U: adjacent_5p upward } 0 5 {G18R:U -> G17R:U: adjacent_3p downward } 0 6 {G17R:U -> G31R:A: pairing parallel cis one_hbond 51 Wh/Wh } 0 7 {G31R:A -> G17R:U: pairing parallel cis one_hbond 51 Wh/Wh } 0 8 {G18R:U -> G19R:G: adjacent_5p } 0 9 {G19R:G -> G18R:U: adjacent_3p } 0 10 {G18R:U -> G30R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {G30R:A -> G18R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {G19R:G -> G29R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {G29R:C -> G19R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {G19R:G -> G30R:A: outward } 0 15 {G30R:A -> G19R:G: outward } 0 16 {G29R:C -> G30R:A: adjacent_5p upward } 0 17 {G30R:A -> G29R:C: adjacent_3p downward } 0 18 {G30R:A -> G31R:A: adjacent_5p inward } 0 19 {G31R:A -> G30R:A: adjacent_3p inward } 0 20 {G31R:A -> G32R:C: adjacent_5p outward } 0 21 {G32R:C -> G31R:A: adjacent_3p outward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 G17R:U 0 1 G18R:U 0 2 G19R:G 0 3 G20R:C 0 4 G28R:G 0 5 G29R:C 0 6 G30R:A 0 7 G31R:A 0 [Edges] 0 {G17R:U -> G18R:U: adjacent_5p upward } 0 1 {G18R:U -> G17R:U: adjacent_3p downward } 0 2 {G17R:U -> G31R:A: pairing parallel cis one_hbond 51 Wh/Wh } 0 3 {G31R:A -> G17R:U: pairing parallel cis one_hbond 51 Wh/Wh } 0 4 {G18R:U -> G19R:G: adjacent_5p } 0 5 {G19R:G -> G18R:U: adjacent_3p } 0 6 {G18R:U -> G30R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {G30R:A -> G18R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {G19R:G -> G20R:C: adjacent_5p upward } 0 9 {G20R:C -> G19R:G: adjacent_3p downward } 0 10 {G19R:G -> G29R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {G29R:C -> G19R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {G19R:G -> G30R:A: outward } 0 13 {G30R:A -> G19R:G: outward } 0 14 {G20R:C -> G28R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {G28R:G -> G20R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {G28R:G -> G29R:C: adjacent_5p upward } 0 17 {G29R:C -> G28R:G: adjacent_3p downward } 0 18 {G29R:C -> G30R:A: adjacent_5p upward } 0 19 {G30R:A -> G29R:C: adjacent_3p downward } 0 20 {G30R:A -> G31R:A: adjacent_5p inward } 0 21 {G31R:A -> G30R:A: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:A 0 2 4R:C 0 3 5R:C 0 4 10R:G 0 5 11R:G 0 6 12R:U 0 7 13R:C 0 [Edges] 0 {2R:G -> 3R:A: adjacent_5p upward } 0 1 {3R:A -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {13R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:A -> 4R:C: adjacent_5p upward } 0 5 {4R:C -> 3R:A: adjacent_3p downward } 0 6 {3R:A -> 12R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {12R:U -> 3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {4R:C -> 5R:C: adjacent_5p } 0 9 {5R:C -> 4R:C: adjacent_3p } 0 10 {4R:C -> 11R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {11R:G -> 4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {5R:C -> 10R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {10R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {10R:G -> 11R:G: adjacent_5p upward } 0 15 {11R:G -> 10R:G: adjacent_3p downward } 0 16 {11R:G -> 12R:U: adjacent_5p upward } 0 17 {12R:U -> 11R:G: adjacent_3p downward } 0 18 {12R:U -> 13R:C: adjacent_5p } 0 19 {13R:C -> 12R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:A 0 1 A3R:G 0 2 A4R:C 0 3 A5R:A 0 4 A28R:C 0 5 A29R:G 0 6 A30R:U 0 7 A31R:U 0 [Edges] 0 {A2R:A -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:A: adjacent_3p downward } 0 2 {A2R:A -> A31R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A31R:U -> A2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A30R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A30R:U -> A3R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A4R:C -> A5R:A: adjacent_5p } 0 9 {A5R:A -> A4R:C: adjacent_3p } 0 10 {A4R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A29R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:A -> A28R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 13 {A28R:C -> A5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 14 {A5R:A -> A29R:G: outward } 0 15 {A29R:G -> A5R:A: outward } 0 16 {A28R:C -> A29R:G: adjacent_5p upward } 0 17 {A29R:G -> A28R:C: adjacent_3p downward } 0 18 {A29R:G -> A30R:U: adjacent_5p upward } 0 19 {A30R:U -> A29R:G: adjacent_3p downward } 0 20 {A30R:U -> A31R:U: adjacent_5p upward } 0 21 {A31R:U -> A30R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:C 0 2 A5R:A 0 3 A6R:G 0 4 A27R:C 0 5 A28R:C 0 6 A29R:G 0 7 A30R:U 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A30R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A30R:U -> A3R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A4R:C -> A5R:A: adjacent_5p } 0 5 {A5R:A -> A4R:C: adjacent_3p } 0 6 {A4R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A29R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:A -> A6R:G: adjacent_5p upward } 0 9 {A6R:G -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> A28R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 11 {A28R:C -> A5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 12 {A5R:A -> A29R:G: outward } 0 13 {A29R:G -> A5R:A: outward } 0 14 {A6R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A27R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A27R:C -> A28R:C: adjacent_5p upward } 0 17 {A28R:C -> A27R:C: adjacent_3p downward } 0 18 {A28R:C -> A29R:G: adjacent_5p upward } 0 19 {A29R:G -> A28R:C: adjacent_3p downward } 0 20 {A29R:G -> A30R:U: adjacent_5p upward } 0 21 {A30R:U -> A29R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:A 0 2 A6R:G 0 3 A7R:U 0 4 A26R:A 0 5 A27R:C 0 6 A28R:C 0 7 A29R:G 0 [Edges] 0 {A4R:C -> A5R:A: adjacent_5p } 0 1 {A5R:A -> A4R:C: adjacent_3p } 0 2 {A4R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A29R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> A28R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 7 {A28R:C -> A5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 8 {A5R:A -> A29R:G: outward } 0 9 {A29R:G -> A5R:A: outward } 0 10 {A6R:G -> A7R:U: adjacent_5p upward } 0 11 {A7R:U -> A6R:G: adjacent_3p downward } 0 12 {A6R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A27R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A26R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A26R:A -> A27R:C: adjacent_5p upward } 0 17 {A27R:C -> A26R:A: adjacent_3p downward } 0 18 {A27R:C -> A28R:C: adjacent_5p upward } 0 19 {A28R:C -> A27R:C: adjacent_3p downward } 0 20 {A28R:C -> A29R:G: adjacent_5p upward } 0 21 {A29R:G -> A28R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:G 0 2 A7R:U 0 3 A8R:U 0 4 A25R:A 0 5 A26R:A 0 6 A27R:C 0 7 A28R:C 0 [Edges] 0 {A5R:A -> A6R:G: adjacent_5p upward } 0 1 {A6R:G -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> A28R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 3 {A28R:C -> A5R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 4 {A6R:G -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A27R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:U -> A8R:U: adjacent_5p upward } 0 9 {A8R:U -> A7R:U: adjacent_3p downward } 0 10 {A7R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A26R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A8R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A25R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A25R:A -> A26R:A: adjacent_5p upward } 0 15 {A26R:A -> A25R:A: adjacent_3p downward } 0 16 {A26R:A -> A27R:C: adjacent_5p upward } 0 17 {A27R:C -> A26R:A: adjacent_3p downward } 0 18 {A27R:C -> A28R:C: adjacent_5p upward } 0 19 {A28R:C -> A27R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:U 0 2 A8R:U 0 3 A9R:C 0 4 A24R:G 0 5 A25R:A 0 6 A26R:A 0 7 A27R:C 0 [Edges] 0 {A6R:G -> A7R:U: adjacent_5p upward } 0 1 {A7R:U -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:U -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:U: adjacent_3p downward } 0 6 {A7R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A26R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A8R:U -> A9R:C: adjacent_5p upward } 0 9 {A9R:C -> A8R:U: adjacent_3p downward } 0 10 {A8R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A25R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A24R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A24R:G -> A25R:A: adjacent_5p upward } 0 15 {A25R:A -> A24R:G: adjacent_3p downward } 0 16 {A25R:A -> A26R:A: adjacent_5p upward } 0 17 {A26R:A -> A25R:A: adjacent_3p downward } 0 18 {A26R:A -> A27R:C: adjacent_5p upward } 0 19 {A27R:C -> A26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:C 0 1 A11R:C 0 2 A12R:C 0 3 A13R:U 0 4 A19R:A 0 5 A20R:G 0 6 A21R:G 0 7 A22R:A 0 [Edges] 0 {A10R:C -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:C: adjacent_3p downward } 0 2 {A10R:C -> A22R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 3 {A22R:A -> A10R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 4 {A11R:C -> A12R:C: adjacent_5p upward } 0 5 {A12R:C -> A11R:C: adjacent_3p downward } 0 6 {A11R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:C -> A13R:U: adjacent_5p upward } 0 9 {A13R:U -> A12R:C: adjacent_3p downward } 0 10 {A12R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A19R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A19R:A -> A20R:G: adjacent_5p upward } 0 15 {A20R:G -> A19R:A: adjacent_3p downward } 0 16 {A20R:G -> A21R:G: adjacent_5p upward } 0 17 {A21R:G -> A20R:G: adjacent_3p downward } 0 18 {A21R:G -> A22R:A: adjacent_5p upward } 0 19 {A22R:A -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:C 0 2 A13R:U 0 3 A14R:G 0 4 A18R:A 0 5 A19R:A 0 6 A20R:G 0 7 A21R:G 0 [Edges] 0 {A11R:C -> A12R:C: adjacent_5p upward } 0 1 {A12R:C -> A11R:C: adjacent_3p downward } 0 2 {A11R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:C -> A13R:U: adjacent_5p upward } 0 5 {A13R:U -> A12R:C: adjacent_3p downward } 0 6 {A12R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:U -> A14R:G: adjacent_5p upward } 0 9 {A14R:G -> A13R:U: adjacent_3p downward } 0 10 {A13R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A19R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A14R:G -> A18R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A18R:A -> A14R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A18R:A -> A19R:A: adjacent_5p upward } 0 15 {A19R:A -> A18R:A: adjacent_3p downward } 0 16 {A19R:A -> A20R:G: adjacent_5p upward } 0 17 {A20R:G -> A19R:A: adjacent_3p downward } 0 18 {A20R:G -> A21R:G: adjacent_5p upward } 0 19 {A21R:G -> A20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:G 0 2 A5R:U 0 3 A6R:U 0 4 A44R:A 0 5 A45R:A 0 6 A46R:U 0 7 A47R:U 0 [Edges] 0 {A3R:A -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A47R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A47R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A46R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A46R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A5R:U -> A6R:U: adjacent_5p upward } 0 9 {A6R:U -> A5R:U: adjacent_3p downward } 0 10 {A5R:U -> A45R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A45R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:U -> A44R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A44R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A44R:A -> A45R:A: adjacent_5p upward } 0 15 {A45R:A -> A44R:A: adjacent_3p downward } 0 16 {A45R:A -> A46R:U: adjacent_5p upward } 0 17 {A46R:U -> A45R:A: adjacent_3p downward } 0 18 {A46R:U -> A47R:U: adjacent_5p } 0 19 {A47R:U -> A46R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:U 0 2 A6R:U 0 3 A7R:C 0 4 A43R:G 0 5 A44R:A 0 6 A45R:A 0 7 A46R:U 0 [Edges] 0 {A4R:G -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A46R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A46R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A5R:U -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> A45R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A45R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:U -> A7R:C: adjacent_5p upward } 0 9 {A7R:C -> A6R:U: adjacent_3p downward } 0 10 {A6R:U -> A44R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A44R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:C -> A43R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A43R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A43R:G -> A44R:A: adjacent_5p upward } 0 15 {A44R:A -> A43R:G: adjacent_3p downward } 0 16 {A44R:A -> A45R:A: adjacent_5p upward } 0 17 {A45R:A -> A44R:A: adjacent_3p downward } 0 18 {A45R:A -> A46R:U: adjacent_5p upward } 0 19 {A46R:U -> A45R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:U 0 2 A7R:C 0 3 A8R:A 0 4 A42R:U 0 5 A43R:G 0 6 A44R:A 0 7 A45R:A 0 [Edges] 0 {A5R:U -> A6R:U: adjacent_5p upward } 0 1 {A6R:U -> A5R:U: adjacent_3p downward } 0 2 {A5R:U -> A45R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A45R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:U -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:U: adjacent_3p downward } 0 6 {A6R:U -> A44R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A44R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:C -> A8R:A: adjacent_5p upward } 0 9 {A8R:A -> A7R:C: adjacent_3p downward } 0 10 {A7R:C -> A43R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A43R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A42R:U -> A8R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A8R:A -> A43R:G: outward } 0 15 {A43R:G -> A8R:A: outward } 0 16 {A42R:U -> A43R:G: adjacent_5p } 0 17 {A43R:G -> A42R:U: adjacent_3p } 0 18 {A43R:G -> A44R:A: adjacent_5p upward } 0 19 {A44R:A -> A43R:G: adjacent_3p downward } 0 20 {A44R:A -> A45R:A: adjacent_5p upward } 0 21 {A45R:A -> A44R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A6R:U 0 1 A7R:C 0 2 A8R:A 0 3 A9R:C 0 4 A41R:G 0 5 A42R:U 0 6 A43R:G 0 7 A44R:A 0 [Edges] 0 {A6R:U -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:U: adjacent_3p downward } 0 2 {A6R:U -> A44R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A44R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:C -> A8R:A: adjacent_5p upward } 0 5 {A8R:A -> A7R:C: adjacent_3p downward } 0 6 {A7R:C -> A43R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A43R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:A -> A9R:C: adjacent_5p upward } 0 9 {A9R:C -> A8R:A: adjacent_3p downward } 0 10 {A8R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A42R:U -> A8R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A8R:A -> A43R:G: outward } 0 13 {A43R:G -> A8R:A: outward } 0 14 {A9R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A41R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A41R:G -> A42R:U: adjacent_5p upward } 0 17 {A42R:U -> A41R:G: adjacent_3p downward } 0 18 {A42R:U -> A43R:G: adjacent_5p } 0 19 {A43R:G -> A42R:U: adjacent_3p } 0 20 {A43R:G -> A44R:A: adjacent_5p upward } 0 21 {A44R:A -> A43R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:A 0 2 A9R:C 0 3 A10R:C 0 4 A40R:A 0 5 A41R:G 0 6 A42R:U 0 7 A43R:G 0 [Edges] 0 {A7R:C -> A8R:A: adjacent_5p upward } 0 1 {A8R:A -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> A43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A43R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:A -> A9R:C: adjacent_5p upward } 0 5 {A9R:C -> A8R:A: adjacent_3p downward } 0 6 {A8R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A42R:U -> A8R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A8R:A -> A43R:G: outward } 0 9 {A43R:G -> A8R:A: outward } 0 10 {A9R:C -> A10R:C: adjacent_5p upward } 0 11 {A10R:C -> A9R:C: adjacent_3p downward } 0 12 {A9R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A41R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A10R:C -> A40R:A: pairing antiparallel trans one_hbond 78 Ws/Wh } 0 15 {A40R:A -> A10R:C: pairing antiparallel trans one_hbond 78 Wh/Ws } 0 16 {A40R:A -> A41R:G: adjacent_5p upward } 0 17 {A41R:G -> A40R:A: adjacent_3p downward } 0 18 {A41R:G -> A42R:U: adjacent_5p upward } 0 19 {A42R:U -> A41R:G: adjacent_3p downward } 0 20 {A42R:U -> A43R:G: adjacent_5p } 0 21 {A43R:G -> A42R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A14R:G 0 1 A15R:C 0 2 A16R:C 0 3 A17R:A 0 4 A34R:G 0 5 A35R:G 0 6 A36R:G 0 7 A37R:U 0 [Edges] 0 {A14R:G -> A15R:C: adjacent_5p upward } 0 1 {A15R:C -> A14R:G: adjacent_3p downward } 0 2 {A14R:G -> A37R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A37R:U -> A14R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A15R:C -> A16R:C: adjacent_5p upward } 0 5 {A16R:C -> A15R:C: adjacent_3p downward } 0 6 {A15R:C -> A36R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A36R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A16R:C -> A17R:A: adjacent_5p upward } 0 9 {A17R:A -> A16R:C: adjacent_3p downward } 0 10 {A16R:C -> A35R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A35R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A17R:A -> A34R:G: pairing antiparallel cis VIII Ww/Ww } 0 13 {A34R:G -> A17R:A: pairing antiparallel cis VIII Ww/Ww } 0 14 {A17R:A -> A35R:G: outward } 0 15 {A35R:G -> A17R:A: outward } 0 16 {A34R:G -> A35R:G: adjacent_5p upward } 0 17 {A35R:G -> A34R:G: adjacent_3p downward } 0 18 {A35R:G -> A36R:G: adjacent_5p upward } 0 19 {A36R:G -> A35R:G: adjacent_3p downward } 0 20 {A36R:G -> A37R:U: adjacent_5p upward } 0 21 {A37R:U -> A36R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:A 0 2 A11R:G 0 3 A12R:U 0 4 A22R:G 0 5 A23R:C 0 6 A24R:U 0 7 A25R:C 0 [Edges] 0 {A9R:G -> A10R:A: adjacent_5p upward } 0 1 {A10R:A -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:A -> A11R:G: adjacent_5p upward } 0 5 {A11R:G -> A10R:A: adjacent_3p downward } 0 6 {A10R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A24R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:G -> A12R:U: adjacent_5p upward } 0 9 {A12R:U -> A11R:G: adjacent_3p downward } 0 10 {A11R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A23R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:U -> A22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A22R:G -> A12R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A22R:G -> A23R:C: adjacent_5p upward } 0 15 {A23R:C -> A22R:G: adjacent_3p downward } 0 16 {A23R:C -> A24R:U: adjacent_5p upward } 0 17 {A24R:U -> A23R:C: adjacent_3p downward } 0 18 {A24R:U -> A25R:C: adjacent_5p } 0 19 {A25R:C -> A24R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A15R:G 0 1 A16R:A 0 2 A17R:U 0 3 A18R:C 0 4 A917R:G 0 5 A918R:A 0 6 A919R:A 0 7 A920R:U 0 [Edges] 0 {A15R:G -> A16R:A: adjacent_5p upward } 0 1 {A16R:A -> A15R:G: adjacent_3p downward } 0 2 {A15R:G -> A920R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A920R:U -> A15R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A16R:A -> A17R:U: adjacent_5p upward } 0 5 {A17R:U -> A16R:A: adjacent_3p downward } 0 6 {A16R:A -> A919R:A: pairing antiparallel cis 37 Ww/Ww } 0 7 {A919R:A -> A16R:A: pairing antiparallel cis 37 Ww/Ww } 0 8 {A17R:U -> A18R:C: adjacent_5p upward } 0 9 {A18R:C -> A17R:U: adjacent_3p downward } 0 10 {A17R:U -> A918R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A918R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A18R:C -> A917R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A917R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A917R:G -> A918R:A: adjacent_5p upward } 0 15 {A918R:A -> A917R:G: adjacent_3p downward } 0 16 {A918R:A -> A919R:A: adjacent_5p upward } 0 17 {A919R:A -> A918R:A: adjacent_3p downward } 0 18 {A919R:A -> A920R:U: adjacent_5p upward } 0 19 {A920R:U -> A919R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A16R:A 0 1 A17R:U 0 2 A18R:C 0 3 A19R:C 0 4 A916R:G 0 5 A917R:G 0 6 A918R:A 0 7 A919R:A 0 [Edges] 0 {A16R:A -> A17R:U: adjacent_5p upward } 0 1 {A17R:U -> A16R:A: adjacent_3p downward } 0 2 {A16R:A -> A919R:A: pairing antiparallel cis 37 Ww/Ww } 0 3 {A919R:A -> A16R:A: pairing antiparallel cis 37 Ww/Ww } 0 4 {A17R:U -> A18R:C: adjacent_5p upward } 0 5 {A18R:C -> A17R:U: adjacent_3p downward } 0 6 {A17R:U -> A918R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A918R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A18R:C -> A19R:C: adjacent_5p upward } 0 9 {A19R:C -> A18R:C: adjacent_3p downward } 0 10 {A18R:C -> A917R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A917R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A19R:C -> A916R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A916R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A916R:G -> A917R:G: adjacent_5p upward } 0 15 {A917R:G -> A916R:G: adjacent_3p downward } 0 16 {A917R:G -> A918R:A: adjacent_5p upward } 0 17 {A918R:A -> A917R:G: adjacent_3p downward } 0 18 {A918R:A -> A919R:A: adjacent_5p upward } 0 19 {A919R:A -> A918R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A17R:U 0 1 A18R:C 0 2 A19R:C 0 3 A20R:U 0 4 A915R:A 0 5 A916R:G 0 6 A917R:G 0 7 A918R:A 0 [Edges] 0 {A17R:U -> A18R:C: adjacent_5p upward } 0 1 {A18R:C -> A17R:U: adjacent_3p downward } 0 2 {A17R:U -> A918R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A918R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A18R:C -> A19R:C: adjacent_5p upward } 0 5 {A19R:C -> A18R:C: adjacent_3p downward } 0 6 {A18R:C -> A917R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A917R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A19R:C -> A20R:U: adjacent_5p upward } 0 9 {A20R:U -> A19R:C: adjacent_3p downward } 0 10 {A19R:C -> A916R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A916R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A20R:U -> A915R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 13 {A915R:A -> A20R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 14 {A915R:A -> A916R:G: adjacent_5p upward } 0 15 {A916R:G -> A915R:A: adjacent_3p downward } 0 16 {A916R:G -> A917R:G: adjacent_5p upward } 0 17 {A917R:G -> A916R:G: adjacent_3p downward } 0 18 {A917R:G -> A918R:A: adjacent_5p upward } 0 19 {A918R:A -> A917R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A18R:C 0 1 A19R:C 0 2 A20R:U 0 3 A21R:G 0 4 A914R:A 0 5 A915R:A 0 6 A916R:G 0 7 A917R:G 0 [Edges] 0 {A18R:C -> A19R:C: adjacent_5p upward } 0 1 {A19R:C -> A18R:C: adjacent_3p downward } 0 2 {A18R:C -> A917R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A917R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A19R:C -> A20R:U: adjacent_5p upward } 0 5 {A20R:U -> A19R:C: adjacent_3p downward } 0 6 {A19R:C -> A916R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A916R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A20R:U -> A21R:G: adjacent_5p upward } 0 9 {A21R:G -> A20R:U: adjacent_3p downward } 0 10 {A20R:U -> A915R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 11 {A915R:A -> A20R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 12 {A21R:G -> A914R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A914R:A -> A21R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A914R:A -> A915R:A: adjacent_5p upward } 0 15 {A915R:A -> A914R:A: adjacent_3p downward } 0 16 {A915R:A -> A916R:G: adjacent_5p upward } 0 17 {A916R:G -> A915R:A: adjacent_3p downward } 0 18 {A916R:G -> A917R:G: adjacent_5p upward } 0 19 {A917R:G -> A916R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A27R:G 0 1 A28R:G 0 2 A29R:G 0 3 A30R:U 0 4 A553R:A 0 5 A554R:C 0 6 A555R:C 0 7 A556R:C 0 [Edges] 0 {A27R:G -> A28R:G: adjacent_5p upward } 0 1 {A28R:G -> A27R:G: adjacent_3p downward } 0 2 {A27R:G -> A556R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A556R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A28R:G -> A29R:G: adjacent_5p upward } 0 5 {A29R:G -> A28R:G: adjacent_3p downward } 0 6 {A28R:G -> A555R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A555R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A29R:G -> A30R:U: adjacent_5p upward } 0 9 {A30R:U -> A29R:G: adjacent_3p downward } 0 10 {A29R:G -> A554R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A554R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A30R:U -> A553R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A553R:A -> A30R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A553R:A -> A554R:C: adjacent_5p upward } 0 15 {A554R:C -> A553R:A: adjacent_3p downward } 0 16 {A554R:C -> A555R:C: adjacent_5p } 0 17 {A555R:C -> A554R:C: adjacent_3p } 0 18 {A555R:C -> A556R:C: adjacent_5p } 0 19 {A556R:C -> A555R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A32R:A 0 1 A33R:A 0 2 A34R:C 0 3 A35R:G 0 4 A549R:C 0 5 A550R:G 0 6 A551R:U 0 7 A552R:U 0 [Edges] 0 {A32R:A -> A33R:A: adjacent_5p upward } 0 1 {A33R:A -> A32R:A: adjacent_3p downward } 0 2 {A32R:A -> A552R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A552R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A33R:A -> A34R:C: adjacent_5p upward } 0 5 {A34R:C -> A33R:A: adjacent_3p downward } 0 6 {A33R:A -> A551R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A551R:U -> A33R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A34R:C -> A35R:G: adjacent_5p } 0 9 {A35R:G -> A34R:C: adjacent_3p } 0 10 {A34R:C -> A550R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A550R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A35R:G -> A549R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A549R:C -> A35R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A35R:G -> A550R:G: outward } 0 15 {A550R:G -> A35R:G: outward } 0 16 {A549R:C -> A550R:G: adjacent_5p upward } 0 17 {A550R:G -> A549R:C: adjacent_3p downward } 0 18 {A550R:G -> A551R:U: adjacent_5p upward } 0 19 {A551R:U -> A550R:G: adjacent_3p downward } 0 20 {A551R:U -> A552R:U: adjacent_5p } 0 21 {A552R:U -> A551R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A33R:A 0 1 A34R:C 0 2 A35R:G 0 3 A36R:C 0 4 A548R:G 0 5 A549R:C 0 6 A550R:G 0 7 A551R:U 0 [Edges] 0 {A33R:A -> A34R:C: adjacent_5p upward } 0 1 {A34R:C -> A33R:A: adjacent_3p downward } 0 2 {A33R:A -> A551R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A551R:U -> A33R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A34R:C -> A35R:G: adjacent_5p } 0 5 {A35R:G -> A34R:C: adjacent_3p } 0 6 {A34R:C -> A550R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A550R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A35R:G -> A36R:C: adjacent_5p upward } 0 9 {A36R:C -> A35R:G: adjacent_3p downward } 0 10 {A35R:G -> A549R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A549R:C -> A35R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A35R:G -> A550R:G: outward } 0 13 {A550R:G -> A35R:G: outward } 0 14 {A36R:C -> A548R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A548R:G -> A36R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A548R:G -> A549R:C: adjacent_5p upward } 0 17 {A549R:C -> A548R:G: adjacent_3p downward } 0 18 {A549R:C -> A550R:G: adjacent_5p upward } 0 19 {A550R:G -> A549R:C: adjacent_3p downward } 0 20 {A550R:G -> A551R:U: adjacent_5p upward } 0 21 {A551R:U -> A550R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A39R:G 0 1 A40R:C 0 2 A41R:G 0 3 A42R:G 0 4 A400R:C 0 5 A401R:C 0 6 A402R:G 0 7 A403R:C 0 [Edges] 0 {A39R:G -> A40R:C: adjacent_5p upward } 0 1 {A40R:C -> A39R:G: adjacent_3p downward } 0 2 {A39R:G -> A403R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A403R:C -> A39R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A40R:C -> A41R:G: adjacent_5p } 0 5 {A41R:G -> A40R:C: adjacent_3p } 0 6 {A40R:C -> A402R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A402R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A41R:G -> A42R:G: adjacent_5p upward } 0 9 {A42R:G -> A41R:G: adjacent_3p downward } 0 10 {A41R:G -> A401R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A401R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A41R:G -> A402R:G: outward } 0 13 {A402R:G -> A41R:G: outward } 0 14 {A42R:G -> A400R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A400R:C -> A42R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A400R:C -> A401R:C: adjacent_5p upward } 0 17 {A401R:C -> A400R:C: adjacent_3p downward } 0 18 {A401R:C -> A402R:G: adjacent_5p upward } 0 19 {A402R:G -> A401R:C: adjacent_3p downward } 0 20 {A402R:G -> A403R:C: adjacent_5p upward } 0 21 {A403R:C -> A402R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A40R:C 0 1 A41R:G 0 2 A42R:G 0 3 A43R:C 0 4 A399R:G 0 5 A400R:C 0 6 A401R:C 0 7 A402R:G 0 [Edges] 0 {A40R:C -> A41R:G: adjacent_5p } 0 1 {A41R:G -> A40R:C: adjacent_3p } 0 2 {A40R:C -> A402R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A402R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A41R:G -> A42R:G: adjacent_5p upward } 0 5 {A42R:G -> A41R:G: adjacent_3p downward } 0 6 {A41R:G -> A401R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A401R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A41R:G -> A402R:G: outward } 0 9 {A402R:G -> A41R:G: outward } 0 10 {A42R:G -> A43R:C: adjacent_5p upward } 0 11 {A43R:C -> A42R:G: adjacent_3p downward } 0 12 {A42R:G -> A400R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A400R:C -> A42R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A43R:C -> A399R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A399R:G -> A43R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A399R:G -> A400R:C: adjacent_5p upward } 0 17 {A400R:C -> A399R:G: adjacent_3p downward } 0 18 {A400R:C -> A401R:C: adjacent_5p upward } 0 19 {A401R:C -> A400R:C: adjacent_3p downward } 0 20 {A401R:C -> A402R:G: adjacent_5p upward } 0 21 {A402R:G -> A401R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A41R:G 0 1 A42R:G 0 2 A43R:C 0 3 A44R:G 0 4 A398R:C 0 5 A399R:G 0 6 A400R:C 0 7 A401R:C 0 [Edges] 0 {A41R:G -> A42R:G: adjacent_5p upward } 0 1 {A42R:G -> A41R:G: adjacent_3p downward } 0 2 {A41R:G -> A401R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A401R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A42R:G -> A43R:C: adjacent_5p upward } 0 5 {A43R:C -> A42R:G: adjacent_3p downward } 0 6 {A42R:G -> A400R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A400R:C -> A42R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A43R:C -> A44R:G: adjacent_5p } 0 9 {A44R:G -> A43R:C: adjacent_3p } 0 10 {A43R:C -> A399R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A399R:G -> A43R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A44R:G -> A398R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A398R:C -> A44R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A44R:G -> A399R:G: outward } 0 15 {A399R:G -> A44R:G: outward } 0 16 {A398R:C -> A399R:G: adjacent_5p } 0 17 {A399R:G -> A398R:C: adjacent_3p } 0 18 {A399R:G -> A400R:C: adjacent_5p upward } 0 19 {A400R:C -> A399R:G: adjacent_3p downward } 0 20 {A400R:C -> A401R:C: adjacent_5p upward } 0 21 {A401R:C -> A400R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A49R:U 0 1 A50R:A 0 2 A51R:A 0 3 A52R:G 0 4 A359R:U 0 5 A360R:A 0 6 A361R:G 0 7 A362R:G 0 [Edges] 0 {A49R:U -> A50R:A: adjacent_5p } 0 1 {A50R:A -> A49R:U: adjacent_3p } 0 2 {A49R:U -> A362R:G: pairing antiparallel cis 93 Ww/Ss } 0 3 {A362R:G -> A49R:U: pairing antiparallel cis 93 Ss/Ww } 0 4 {A50R:A -> A51R:A: adjacent_5p } 0 5 {A51R:A -> A50R:A: adjacent_3p } 0 6 {A51R:A -> A52R:G: adjacent_5p } 0 7 {A52R:G -> A51R:A: adjacent_3p } 0 8 {A52R:G -> A359R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {A359R:U -> A52R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {A52R:G -> A360R:A: outward } 0 11 {A360R:A -> A52R:G: outward } 0 12 {A359R:U -> A360R:A: adjacent_5p upward } 0 13 {A360R:A -> A359R:U: adjacent_3p downward } 0 14 {A360R:A -> A361R:G: adjacent_5p upward } 0 15 {A361R:G -> A360R:A: adjacent_3p downward } 0 16 {A361R:G -> A362R:G: adjacent_5p upward } 0 17 {A362R:G -> A361R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 10 . . 4 . . . 9 . 12 . . 5 . . . 11 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A55R:A 0 1 A56R:U 0 2 A57R:G 0 3 A58R:C 0 4 A354R:G 0 5 A355R:C 0 6 A356R:A 0 7 A357R:G 0 [Edges] 0 {A55R:A -> A56R:U: adjacent_5p upward } 0 1 {A56R:U -> A55R:A: adjacent_3p downward } 0 2 {A55R:A -> A357R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A357R:G -> A55R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A56R:U -> A57R:G: adjacent_5p } 0 5 {A57R:G -> A56R:U: adjacent_3p } 0 6 {A56R:U -> A356R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A356R:A -> A56R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A57R:G -> A58R:C: adjacent_5p upward } 0 9 {A58R:C -> A57R:G: adjacent_3p downward } 0 10 {A57R:G -> A355R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A355R:C -> A57R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A57R:G -> A356R:A: outward } 0 13 {A356R:A -> A57R:G: outward } 0 14 {A58R:C -> A354R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A354R:G -> A58R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A354R:G -> A355R:C: adjacent_5p upward } 0 17 {A355R:C -> A354R:G: adjacent_3p downward } 0 18 {A355R:C -> A356R:A: adjacent_5p upward } 0 19 {A356R:A -> A355R:C: adjacent_3p downward } 0 20 {A356R:A -> A357R:G: adjacent_5p upward } 0 21 {A357R:G -> A356R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A60R:A 0 1 A61R:G 0 2 A62R:U 0 3 A63R:C 0 4 A104R:G 0 5 A105R:G 0 6 A106R:C 0 7 A107R:G 0 [Edges] 0 {A60R:A -> A61R:G: adjacent_5p } 0 1 {A61R:G -> A60R:A: adjacent_3p } 0 2 {A60R:A -> A107R:G: pairing parallel trans one_hbond Bs/Ss } 0 3 {A107R:G -> A60R:A: pairing parallel trans one_hbond Ss/Bs } 0 4 {A61R:G -> A62R:U: adjacent_5p upward } 0 5 {A62R:U -> A61R:G: adjacent_3p downward } 0 6 {A61R:G -> A106R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A106R:C -> A61R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A61R:G -> A107R:G: outward } 0 9 {A107R:G -> A61R:G: outward } 0 10 {A62R:U -> A63R:C: adjacent_5p } 0 11 {A63R:C -> A62R:U: adjacent_3p } 0 12 {A62R:U -> A105R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A105R:G -> A62R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A63R:C -> A104R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A104R:G -> A63R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A104R:G -> A105R:G: adjacent_5p upward } 0 17 {A105R:G -> A104R:G: adjacent_3p downward } 0 18 {A105R:G -> A106R:C: adjacent_5p upward } 0 19 {A106R:C -> A105R:G: adjacent_3p downward } 0 20 {A106R:C -> A107R:G: adjacent_5p upward } 0 21 {A107R:G -> A106R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A66R:G 0 1 A67R:C 0 2 A68R:G 0 3 A69R:G 0 4 A99R:C 0 5 A101R:A 0 6 A102R:G 0 7 A103R:C 0 [Edges] 0 {A66R:G -> A67R:C: adjacent_5p upward } 0 1 {A67R:C -> A66R:G: adjacent_3p downward } 0 2 {A66R:G -> A103R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A103R:C -> A66R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A67R:C -> A68R:G: adjacent_5p } 0 5 {A68R:G -> A67R:C: adjacent_3p } 0 6 {A67R:C -> A102R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A102R:G -> A67R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A68R:G -> A69R:G: adjacent_5p upward } 0 9 {A69R:G -> A68R:G: adjacent_3p downward } 0 10 {A68R:G -> A101R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {A101R:A -> A68R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {A68R:G -> A102R:G: outward } 0 13 {A102R:G -> A68R:G: outward } 0 14 {A69R:G -> A99R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A99R:C -> A69R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A99R:C -> A101R:A: adjacent_5p upward } 0 17 {A101R:A -> A99R:C: adjacent_3p downward } 0 18 {A101R:A -> A102R:G: adjacent_5p upward } 0 19 {A102R:G -> A101R:A: adjacent_3p downward } 0 20 {A102R:G -> A103R:C: adjacent_5p upward } 0 21 {A103R:C -> A102R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A67R:C 0 1 A68R:G 0 2 A69R:G 0 3 A70R:G 0 4 A98R:U 0 5 A99R:C 0 6 A101R:A 0 7 A102R:G 0 [Edges] 0 {A67R:C -> A68R:G: adjacent_5p } 0 1 {A68R:G -> A67R:C: adjacent_3p } 0 2 {A67R:C -> A102R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A102R:G -> A67R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A68R:G -> A69R:G: adjacent_5p upward } 0 5 {A69R:G -> A68R:G: adjacent_3p downward } 0 6 {A68R:G -> A101R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {A101R:A -> A68R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A68R:G -> A102R:G: outward } 0 9 {A102R:G -> A68R:G: outward } 0 10 {A69R:G -> A70R:G: adjacent_5p upward } 0 11 {A70R:G -> A69R:G: adjacent_3p downward } 0 12 {A69R:G -> A99R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A99R:C -> A69R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A70R:G -> A98R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A98R:U -> A70R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A98R:U -> A99R:C: adjacent_5p } 0 17 {A99R:C -> A98R:U: adjacent_3p } 0 18 {A99R:C -> A101R:A: adjacent_5p upward } 0 19 {A101R:A -> A99R:C: adjacent_3p downward } 0 20 {A101R:A -> A102R:G: adjacent_5p upward } 0 21 {A102R:G -> A101R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A68R:G 0 1 A69R:G 0 2 A70R:G 0 3 A73R:C 0 4 A97R:G 0 5 A98R:U 0 6 A99R:C 0 7 A101R:A 0 [Edges] 0 {A68R:G -> A69R:G: adjacent_5p upward } 0 1 {A69R:G -> A68R:G: adjacent_3p downward } 0 2 {A68R:G -> A101R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A101R:A -> A68R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A69R:G -> A70R:G: adjacent_5p upward } 0 5 {A70R:G -> A69R:G: adjacent_3p downward } 0 6 {A69R:G -> A99R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A99R:C -> A69R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A70R:G -> A73R:C: adjacent_5p upward } 0 9 {A73R:C -> A70R:G: adjacent_3p downward } 0 10 {A70R:G -> A98R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A98R:U -> A70R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A73R:C -> A97R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A97R:G -> A73R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A97R:G -> A98R:U: adjacent_5p upward } 0 15 {A98R:U -> A97R:G: adjacent_3p downward } 0 16 {A98R:U -> A99R:C: adjacent_5p } 0 17 {A99R:C -> A98R:U: adjacent_3p } 0 18 {A99R:C -> A101R:A: adjacent_5p upward } 0 19 {A101R:A -> A99R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A69R:G 0 1 A70R:G 0 2 A73R:C 0 3 A74R:C 0 4 A96R:G 0 5 A97R:G 0 6 A98R:U 0 7 A99R:C 0 [Edges] 0 {A69R:G -> A70R:G: adjacent_5p upward } 0 1 {A70R:G -> A69R:G: adjacent_3p downward } 0 2 {A69R:G -> A99R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A99R:C -> A69R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A70R:G -> A73R:C: adjacent_5p upward } 0 5 {A73R:C -> A70R:G: adjacent_3p downward } 0 6 {A70R:G -> A98R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A98R:U -> A70R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A73R:C -> A74R:C: adjacent_5p upward } 0 9 {A74R:C -> A73R:C: adjacent_3p downward } 0 10 {A73R:C -> A97R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A97R:G -> A73R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A74R:C -> A96R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A96R:G -> A74R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A96R:G -> A97R:G: adjacent_5p upward } 0 15 {A97R:G -> A96R:G: adjacent_3p downward } 0 16 {A97R:G -> A98R:U: adjacent_5p upward } 0 17 {A98R:U -> A97R:G: adjacent_3p downward } 0 18 {A98R:U -> A99R:C: adjacent_5p } 0 19 {A99R:C -> A98R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A70R:G 0 1 A73R:C 0 2 A74R:C 0 3 A75R:G 0 4 A95R:U 0 5 A96R:G 0 6 A97R:G 0 7 A98R:U 0 [Edges] 0 {A70R:G -> A73R:C: adjacent_5p upward } 0 1 {A73R:C -> A70R:G: adjacent_3p downward } 0 2 {A70R:G -> A98R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A98R:U -> A70R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A73R:C -> A74R:C: adjacent_5p upward } 0 5 {A74R:C -> A73R:C: adjacent_3p downward } 0 6 {A73R:C -> A97R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A97R:G -> A73R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A74R:C -> A75R:G: adjacent_5p } 0 9 {A75R:G -> A74R:C: adjacent_3p } 0 10 {A74R:C -> A96R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A96R:G -> A74R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A75R:G -> A95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A95R:U -> A75R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A75R:G -> A96R:G: outward } 0 15 {A96R:G -> A75R:G: outward } 0 16 {A95R:U -> A96R:G: adjacent_5p } 0 17 {A96R:G -> A95R:U: adjacent_3p } 0 18 {A96R:G -> A97R:G: adjacent_5p upward } 0 19 {A97R:G -> A96R:G: adjacent_3p downward } 0 20 {A97R:G -> A98R:U: adjacent_5p upward } 0 21 {A98R:U -> A97R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A73R:C 0 1 A74R:C 0 2 A75R:G 0 3 A76R:C 0 4 A93R:G 0 5 A95R:U 0 6 A96R:G 0 7 A97R:G 0 [Edges] 0 {A73R:C -> A74R:C: adjacent_5p upward } 0 1 {A74R:C -> A73R:C: adjacent_3p downward } 0 2 {A73R:C -> A97R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A97R:G -> A73R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A74R:C -> A75R:G: adjacent_5p } 0 5 {A75R:G -> A74R:C: adjacent_3p } 0 6 {A74R:C -> A96R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A96R:G -> A74R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A75R:G -> A76R:C: adjacent_5p upward } 0 9 {A76R:C -> A75R:G: adjacent_3p downward } 0 10 {A75R:G -> A95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A95R:U -> A75R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A75R:G -> A96R:G: outward } 0 13 {A96R:G -> A75R:G: outward } 0 14 {A76R:C -> A93R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A93R:G -> A76R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A93R:G -> A95R:U: adjacent_5p upward } 0 17 {A95R:U -> A93R:G: adjacent_3p downward } 0 18 {A95R:U -> A96R:G: adjacent_5p } 0 19 {A96R:G -> A95R:U: adjacent_3p } 0 20 {A96R:G -> A97R:G: adjacent_5p upward } 0 21 {A97R:G -> A96R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A74R:C 0 1 A75R:G 0 2 A76R:C 0 3 A77R:G 0 4 A92R:C 0 5 A93R:G 0 6 A95R:U 0 7 A96R:G 0 [Edges] 0 {A74R:C -> A75R:G: adjacent_5p } 0 1 {A75R:G -> A74R:C: adjacent_3p } 0 2 {A74R:C -> A96R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A96R:G -> A74R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A75R:G -> A76R:C: adjacent_5p upward } 0 5 {A76R:C -> A75R:G: adjacent_3p downward } 0 6 {A75R:G -> A95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A95R:U -> A75R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A75R:G -> A96R:G: outward } 0 9 {A96R:G -> A75R:G: outward } 0 10 {A76R:C -> A77R:G: adjacent_5p upward } 0 11 {A77R:G -> A76R:C: adjacent_3p downward } 0 12 {A76R:C -> A93R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A93R:G -> A76R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A77R:G -> A92R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A92R:C -> A77R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A77R:G -> A93R:G: outward } 0 17 {A93R:G -> A77R:G: outward } 0 18 {A92R:C -> A93R:G: adjacent_5p } 0 19 {A93R:G -> A92R:C: adjacent_3p } 0 20 {A93R:G -> A95R:U: adjacent_5p upward } 0 21 {A95R:U -> A93R:G: adjacent_3p downward } 0 22 {A95R:U -> A96R:G: adjacent_5p } 0 23 {A96R:G -> A95R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A75R:G 0 1 A76R:C 0 2 A77R:G 0 3 A78R:G 0 4 A91R:C 0 5 A92R:C 0 6 A93R:G 0 7 A95R:U 0 [Edges] 0 {A75R:G -> A76R:C: adjacent_5p upward } 0 1 {A76R:C -> A75R:G: adjacent_3p downward } 0 2 {A75R:G -> A95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A95R:U -> A75R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A76R:C -> A77R:G: adjacent_5p upward } 0 5 {A77R:G -> A76R:C: adjacent_3p downward } 0 6 {A76R:C -> A93R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A93R:G -> A76R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A77R:G -> A78R:G: adjacent_5p upward } 0 9 {A78R:G -> A77R:G: adjacent_3p downward } 0 10 {A77R:G -> A92R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A92R:C -> A77R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A77R:G -> A93R:G: outward } 0 13 {A93R:G -> A77R:G: outward } 0 14 {A78R:G -> A91R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A91R:C -> A78R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A78R:G -> A92R:C: outward } 0 17 {A92R:C -> A78R:G: outward } 0 18 {A91R:C -> A92R:C: adjacent_5p upward } 0 19 {A92R:C -> A91R:C: adjacent_3p downward } 0 20 {A92R:C -> A93R:G: adjacent_5p } 0 21 {A93R:G -> A92R:C: adjacent_3p } 0 22 {A93R:G -> A95R:U: adjacent_5p upward } 0 23 {A95R:U -> A93R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A76R:C 0 1 A77R:G 0 2 A78R:G 0 3 A79R:G 0 4 A90R:U 0 5 A91R:C 0 6 A92R:C 0 7 A93R:G 0 [Edges] 0 {A76R:C -> A77R:G: adjacent_5p upward } 0 1 {A77R:G -> A76R:C: adjacent_3p downward } 0 2 {A76R:C -> A93R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A93R:G -> A76R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A77R:G -> A78R:G: adjacent_5p upward } 0 5 {A78R:G -> A77R:G: adjacent_3p downward } 0 6 {A77R:G -> A92R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A92R:C -> A77R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A77R:G -> A93R:G: outward } 0 9 {A93R:G -> A77R:G: outward } 0 10 {A78R:G -> A79R:G: adjacent_5p upward } 0 11 {A79R:G -> A78R:G: adjacent_3p downward } 0 12 {A78R:G -> A91R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A91R:C -> A78R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A78R:G -> A92R:C: outward } 0 15 {A92R:C -> A78R:G: outward } 0 16 {A79R:G -> A90R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 17 {A90R:U -> A79R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 18 {A79R:G -> A91R:C: outward } 0 19 {A91R:C -> A79R:G: outward } 0 20 {A90R:U -> A91R:C: adjacent_5p } 0 21 {A91R:C -> A90R:U: adjacent_3p } 0 22 {A91R:C -> A92R:C: adjacent_5p upward } 0 23 {A92R:C -> A91R:C: adjacent_3p downward } 0 24 {A92R:C -> A93R:G: adjacent_5p } 0 25 {A93R:G -> A92R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 18 . . 4 . . . 17 . 20 . . 5 . . 13 19 21 . 22 . 6 . 7 15 . . 23 . 24 7 3 9 . . . . 25 . [GraphModel] [Vertices] 0 A77R:G 0 1 A78R:G 0 2 A79R:G 0 3 A80R:G 0 4 A89R:C 0 5 A90R:U 0 6 A91R:C 0 7 A92R:C 0 [Edges] 0 {A77R:G -> A78R:G: adjacent_5p upward } 0 1 {A78R:G -> A77R:G: adjacent_3p downward } 0 2 {A77R:G -> A92R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A92R:C -> A77R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A78R:G -> A79R:G: adjacent_5p upward } 0 5 {A79R:G -> A78R:G: adjacent_3p downward } 0 6 {A78R:G -> A91R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A91R:C -> A78R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A78R:G -> A92R:C: outward } 0 9 {A92R:C -> A78R:G: outward } 0 10 {A79R:G -> A80R:G: adjacent_5p upward } 0 11 {A80R:G -> A79R:G: adjacent_3p downward } 0 12 {A79R:G -> A90R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A90R:U -> A79R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A79R:G -> A91R:C: outward } 0 15 {A91R:C -> A79R:G: outward } 0 16 {A80R:G -> A89R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {A89R:C -> A80R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {A89R:C -> A90R:U: adjacent_5p upward } 0 19 {A90R:U -> A89R:C: adjacent_3p downward } 0 20 {A90R:U -> A91R:C: adjacent_5p } 0 21 {A91R:C -> A90R:U: adjacent_3p } 0 22 {A91R:C -> A92R:C: adjacent_5p upward } 0 23 {A92R:C -> A91R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A112R:G 0 1 A113R:G 0 2 A114R:U 0 3 A115R:G 0 4 A312R:C 0 5 A313R:A 0 6 A314R:C 0 7 A315R:A 0 [Edges] 0 {A112R:G -> A113R:G: adjacent_5p upward } 0 1 {A113R:G -> A112R:G: adjacent_3p downward } 0 2 {A112R:G -> A315R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A315R:A -> A112R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A113R:G -> A114R:U: adjacent_5p upward } 0 5 {A114R:U -> A113R:G: adjacent_3p downward } 0 6 {A113R:G -> A314R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A314R:C -> A113R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A113R:G -> A315R:A: outward } 0 9 {A315R:A -> A113R:G: outward } 0 10 {A114R:U -> A115R:G: adjacent_5p upward } 0 11 {A115R:G -> A114R:U: adjacent_3p downward } 0 12 {A114R:U -> A313R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A313R:A -> A114R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A115R:G -> A312R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A312R:C -> A115R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A115R:G -> A313R:A: outward } 0 17 {A313R:A -> A115R:G: outward } 0 18 {A312R:C -> A313R:A: adjacent_5p upward } 0 19 {A313R:A -> A312R:C: adjacent_3p downward } 0 20 {A313R:A -> A314R:C: adjacent_5p upward } 0 21 {A314R:C -> A313R:A: adjacent_3p downward } 0 22 {A314R:C -> A315R:A: adjacent_5p upward } 0 23 {A315R:A -> A314R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A122R:G 0 1 A123R:C 0 2 A124R:G 0 3 A125R:U 0 4 A236R:G 0 5 A237R:C 0 6 A238R:G 0 7 A239R:U 0 [Edges] 0 {A122R:G -> A123R:C: adjacent_5p upward } 0 1 {A123R:C -> A122R:G: adjacent_3p downward } 0 2 {A122R:G -> A239R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A239R:U -> A122R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A123R:C -> A124R:G: adjacent_5p upward } 0 5 {A124R:G -> A123R:C: adjacent_3p downward } 0 6 {A123R:C -> A238R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A238R:G -> A123R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A124R:G -> A125R:U: adjacent_5p upward } 0 9 {A125R:U -> A124R:G: adjacent_3p downward } 0 10 {A124R:G -> A237R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A237R:C -> A124R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A124R:G -> A238R:G: outward } 0 13 {A238R:G -> A124R:G: outward } 0 14 {A125R:U -> A236R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A236R:G -> A125R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A236R:G -> A237R:C: adjacent_5p upward } 0 17 {A237R:C -> A236R:G: adjacent_3p downward } 0 18 {A237R:C -> A238R:G: adjacent_5p upward } 0 19 {A238R:G -> A237R:C: adjacent_3p downward } 0 20 {A238R:G -> A239R:U: adjacent_5p upward } 0 21 {A239R:U -> A238R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A123R:C 0 1 A124R:G 0 2 A125R:U 0 3 A126R:G 0 4 A235R:C 0 5 A236R:G 0 6 A237R:C 0 7 A238R:G 0 [Edges] 0 {A123R:C -> A124R:G: adjacent_5p upward } 0 1 {A124R:G -> A123R:C: adjacent_3p downward } 0 2 {A123R:C -> A238R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A238R:G -> A123R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A124R:G -> A125R:U: adjacent_5p upward } 0 5 {A125R:U -> A124R:G: adjacent_3p downward } 0 6 {A124R:G -> A237R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A237R:C -> A124R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A124R:G -> A238R:G: outward } 0 9 {A238R:G -> A124R:G: outward } 0 10 {A125R:U -> A126R:G: adjacent_5p upward } 0 11 {A126R:G -> A125R:U: adjacent_3p downward } 0 12 {A125R:U -> A236R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A236R:G -> A125R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A126R:G -> A235R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A235R:C -> A126R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A126R:G -> A236R:G: outward } 0 17 {A236R:G -> A126R:G: outward } 0 18 {A235R:C -> A236R:G: adjacent_5p } 0 19 {A236R:G -> A235R:C: adjacent_3p } 0 20 {A236R:G -> A237R:C: adjacent_5p upward } 0 21 {A237R:C -> A236R:G: adjacent_3p downward } 0 22 {A237R:C -> A238R:G: adjacent_5p upward } 0 23 {A238R:G -> A237R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A124R:G 0 1 A125R:U 0 2 A126R:G 0 3 A127R:G 0 4 A234R:C 0 5 A235R:C 0 6 A236R:G 0 7 A237R:C 0 [Edges] 0 {A124R:G -> A125R:U: adjacent_5p upward } 0 1 {A125R:U -> A124R:G: adjacent_3p downward } 0 2 {A124R:G -> A237R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A237R:C -> A124R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A125R:U -> A126R:G: adjacent_5p upward } 0 5 {A126R:G -> A125R:U: adjacent_3p downward } 0 6 {A125R:U -> A236R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A236R:G -> A125R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A126R:G -> A127R:G: adjacent_5p upward } 0 9 {A127R:G -> A126R:G: adjacent_3p downward } 0 10 {A126R:G -> A235R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A235R:C -> A126R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A126R:G -> A236R:G: outward } 0 13 {A236R:G -> A126R:G: outward } 0 14 {A127R:G -> A234R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A234R:C -> A127R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A234R:C -> A235R:C: adjacent_5p } 0 17 {A235R:C -> A234R:C: adjacent_3p } 0 18 {A235R:C -> A236R:G: adjacent_5p } 0 19 {A236R:G -> A235R:C: adjacent_3p } 0 20 {A236R:G -> A237R:C: adjacent_5p upward } 0 21 {A237R:C -> A236R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A125R:U 0 1 A126R:G 0 2 A127R:G 0 3 A128R:G 0 4 A233R:C 0 5 A234R:C 0 6 A235R:C 0 7 A236R:G 0 [Edges] 0 {A125R:U -> A126R:G: adjacent_5p upward } 0 1 {A126R:G -> A125R:U: adjacent_3p downward } 0 2 {A125R:U -> A236R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A236R:G -> A125R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A126R:G -> A127R:G: adjacent_5p upward } 0 5 {A127R:G -> A126R:G: adjacent_3p downward } 0 6 {A126R:G -> A235R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A235R:C -> A126R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A126R:G -> A236R:G: outward } 0 9 {A236R:G -> A126R:G: outward } 0 10 {A127R:G -> A128R:G: adjacent_5p upward } 0 11 {A128R:G -> A127R:G: adjacent_3p downward } 0 12 {A127R:G -> A234R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A234R:C -> A127R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A128R:G -> A233R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A233R:C -> A128R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A128R:G -> A234R:C: outward } 0 17 {A234R:C -> A128R:G: outward } 0 18 {A233R:C -> A234R:C: adjacent_5p upward } 0 19 {A234R:C -> A233R:C: adjacent_3p downward } 0 20 {A234R:C -> A235R:C: adjacent_5p } 0 21 {A235R:C -> A234R:C: adjacent_3p } 0 22 {A235R:C -> A236R:G: adjacent_5p } 0 23 {A236R:G -> A235R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A126R:G 0 1 A127R:G 0 2 A128R:G 0 3 A129R:U 0 4 A232R:G 0 5 A233R:C 0 6 A234R:C 0 7 A235R:C 0 [Edges] 0 {A126R:G -> A127R:G: adjacent_5p upward } 0 1 {A127R:G -> A126R:G: adjacent_3p downward } 0 2 {A126R:G -> A235R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A235R:C -> A126R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A127R:G -> A128R:G: adjacent_5p upward } 0 5 {A128R:G -> A127R:G: adjacent_3p downward } 0 6 {A127R:G -> A234R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A234R:C -> A127R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A128R:G -> A129R:U: adjacent_5p upward } 0 9 {A129R:U -> A128R:G: adjacent_3p downward } 0 10 {A128R:G -> A233R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A233R:C -> A128R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A128R:G -> A234R:C: outward } 0 13 {A234R:C -> A128R:G: outward } 0 14 {A129R:U -> A232R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A232R:G -> A129R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A232R:G -> A233R:C: adjacent_5p upward } 0 17 {A233R:C -> A232R:G: adjacent_3p downward } 0 18 {A233R:C -> A234R:C: adjacent_5p upward } 0 19 {A234R:C -> A233R:C: adjacent_3p downward } 0 20 {A234R:C -> A235R:C: adjacent_5p } 0 21 {A235R:C -> A234R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A136R:C 0 1 A137R:C 0 2 A138R:G 0 3 A139R:G 0 4 A224R:C 0 5 A225R:C 0 6 A226R:G 0 7 A227R:G 0 [Edges] 0 {A136R:C -> A137R:C: adjacent_5p upward } 0 1 {A137R:C -> A136R:C: adjacent_3p downward } 0 2 {A136R:C -> A227R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A227R:G -> A136R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A137R:C -> A138R:G: adjacent_5p } 0 5 {A138R:G -> A137R:C: adjacent_3p } 0 6 {A137R:C -> A226R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A226R:G -> A137R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A138R:G -> A139R:G: adjacent_5p upward } 0 9 {A139R:G -> A138R:G: adjacent_3p downward } 0 10 {A138R:G -> A225R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A225R:C -> A138R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A138R:G -> A226R:G: outward } 0 13 {A226R:G -> A138R:G: outward } 0 14 {A139R:G -> A224R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A224R:C -> A139R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A224R:C -> A225R:C: adjacent_5p } 0 17 {A225R:C -> A224R:C: adjacent_3p } 0 18 {A225R:C -> A226R:G: adjacent_5p upward } 0 19 {A226R:G -> A225R:C: adjacent_3p downward } 0 20 {A226R:G -> A227R:G: adjacent_5p upward } 0 21 {A227R:G -> A226R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A137R:C 0 1 A138R:G 0 2 A139R:G 0 3 A140R:A 0 4 A223R:U 0 5 A224R:C 0 6 A225R:C 0 7 A226R:G 0 [Edges] 0 {A137R:C -> A138R:G: adjacent_5p } 0 1 {A138R:G -> A137R:C: adjacent_3p } 0 2 {A137R:C -> A226R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A226R:G -> A137R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A138R:G -> A139R:G: adjacent_5p upward } 0 5 {A139R:G -> A138R:G: adjacent_3p downward } 0 6 {A138R:G -> A225R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A225R:C -> A138R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A138R:G -> A226R:G: outward } 0 9 {A226R:G -> A138R:G: outward } 0 10 {A139R:G -> A140R:A: adjacent_5p upward } 0 11 {A140R:A -> A139R:G: adjacent_3p downward } 0 12 {A139R:G -> A224R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A224R:C -> A139R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A140R:A -> A223R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A223R:U -> A140R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A223R:U -> A224R:C: adjacent_5p upward } 0 17 {A224R:C -> A223R:U: adjacent_3p downward } 0 18 {A224R:C -> A225R:C: adjacent_5p } 0 19 {A225R:C -> A224R:C: adjacent_3p } 0 20 {A225R:C -> A226R:G: adjacent_5p upward } 0 21 {A226R:G -> A225R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A138R:G 0 1 A139R:G 0 2 A140R:A 0 3 A141R:A 0 4 A222R:U 0 5 A223R:U 0 6 A224R:C 0 7 A225R:C 0 [Edges] 0 {A138R:G -> A139R:G: adjacent_5p upward } 0 1 {A139R:G -> A138R:G: adjacent_3p downward } 0 2 {A138R:G -> A225R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A225R:C -> A138R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A139R:G -> A140R:A: adjacent_5p upward } 0 5 {A140R:A -> A139R:G: adjacent_3p downward } 0 6 {A139R:G -> A224R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A224R:C -> A139R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A140R:A -> A141R:A: adjacent_5p upward } 0 9 {A141R:A -> A140R:A: adjacent_3p downward } 0 10 {A140R:A -> A223R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A223R:U -> A140R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A141R:A -> A222R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A222R:U -> A141R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A222R:U -> A223R:U: adjacent_5p } 0 15 {A223R:U -> A222R:U: adjacent_3p } 0 16 {A223R:U -> A224R:C: adjacent_5p upward } 0 17 {A224R:C -> A223R:U: adjacent_3p downward } 0 18 {A224R:C -> A225R:C: adjacent_5p } 0 19 {A225R:C -> A224R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A139R:G 0 1 A140R:A 0 2 A141R:A 0 3 A142R:G 0 4 A221R:C 0 5 A222R:U 0 6 A223R:U 0 7 A224R:C 0 [Edges] 0 {A139R:G -> A140R:A: adjacent_5p upward } 0 1 {A140R:A -> A139R:G: adjacent_3p downward } 0 2 {A139R:G -> A224R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A224R:C -> A139R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A140R:A -> A141R:A: adjacent_5p upward } 0 5 {A141R:A -> A140R:A: adjacent_3p downward } 0 6 {A140R:A -> A223R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A223R:U -> A140R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A141R:A -> A142R:G: adjacent_5p upward } 0 9 {A142R:G -> A141R:A: adjacent_3p downward } 0 10 {A141R:A -> A222R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A222R:U -> A141R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A142R:G -> A221R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A221R:C -> A142R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A142R:G -> A222R:U: outward } 0 15 {A222R:U -> A142R:G: outward } 0 16 {A221R:C -> A222R:U: adjacent_5p } 0 17 {A222R:U -> A221R:C: adjacent_3p } 0 18 {A222R:U -> A223R:U: adjacent_5p } 0 19 {A223R:U -> A222R:U: adjacent_3p } 0 20 {A223R:U -> A224R:C: adjacent_5p upward } 0 21 {A224R:C -> A223R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A140R:A 0 1 A141R:A 0 2 A142R:G 0 3 A143R:A 0 4 A220R:G 0 5 A221R:C 0 6 A222R:U 0 7 A223R:U 0 [Edges] 0 {A140R:A -> A141R:A: adjacent_5p upward } 0 1 {A141R:A -> A140R:A: adjacent_3p downward } 0 2 {A140R:A -> A223R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A223R:U -> A140R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A141R:A -> A142R:G: adjacent_5p upward } 0 5 {A142R:G -> A141R:A: adjacent_3p downward } 0 6 {A141R:A -> A222R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A222R:U -> A141R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A142R:G -> A143R:A: adjacent_5p upward } 0 9 {A143R:A -> A142R:G: adjacent_3p downward } 0 10 {A142R:G -> A221R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A221R:C -> A142R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A142R:G -> A222R:U: outward } 0 13 {A222R:U -> A142R:G: outward } 0 14 {A143R:A -> A220R:G: pairing antiparallel cis VIII Ww/Ww } 0 15 {A220R:G -> A143R:A: pairing antiparallel cis VIII Ww/Ww } 0 16 {A220R:G -> A221R:C: adjacent_5p upward } 0 17 {A221R:C -> A220R:G: adjacent_3p downward } 0 18 {A221R:C -> A222R:U: adjacent_5p } 0 19 {A222R:U -> A221R:C: adjacent_3p } 0 20 {A222R:U -> A223R:U: adjacent_5p } 0 21 {A223R:U -> A222R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A144R:G 0 1 A145R:G 0 2 A146R:G 0 3 A147R:G 0 4 A175R:C 0 5 A176R:C 0 6 A177R:C 0 7 A178R:C 0 [Edges] 0 {A144R:G -> A145R:G: adjacent_5p upward } 0 1 {A145R:G -> A144R:G: adjacent_3p downward } 0 2 {A144R:G -> A178R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A178R:C -> A144R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A145R:G -> A146R:G: adjacent_5p upward } 0 5 {A146R:G -> A145R:G: adjacent_3p downward } 0 6 {A145R:G -> A177R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A177R:C -> A145R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A146R:G -> A147R:G: adjacent_5p upward } 0 9 {A147R:G -> A146R:G: adjacent_3p downward } 0 10 {A146R:G -> A176R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A176R:C -> A146R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A147R:G -> A175R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A175R:C -> A147R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A175R:C -> A176R:C: adjacent_5p } 0 15 {A176R:C -> A175R:C: adjacent_3p } 0 16 {A176R:C -> A177R:C: adjacent_5p } 0 17 {A177R:C -> A176R:C: adjacent_3p } 0 18 {A177R:C -> A178R:C: adjacent_5p } 0 19 {A178R:C -> A177R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A145R:G 0 1 A146R:G 0 2 A147R:G 0 3 A148R:G 0 4 A174R:C 0 5 A175R:C 0 6 A176R:C 0 7 A177R:C 0 [Edges] 0 {A145R:G -> A146R:G: adjacent_5p upward } 0 1 {A146R:G -> A145R:G: adjacent_3p downward } 0 2 {A145R:G -> A177R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A177R:C -> A145R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A146R:G -> A147R:G: adjacent_5p upward } 0 5 {A147R:G -> A146R:G: adjacent_3p downward } 0 6 {A146R:G -> A176R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A176R:C -> A146R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A147R:G -> A148R:G: adjacent_5p upward } 0 9 {A148R:G -> A147R:G: adjacent_3p downward } 0 10 {A147R:G -> A175R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A175R:C -> A147R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A148R:G -> A174R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A174R:C -> A148R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A148R:G -> A175R:C: outward } 0 15 {A175R:C -> A148R:G: outward } 0 16 {A174R:C -> A175R:C: adjacent_5p } 0 17 {A175R:C -> A174R:C: adjacent_3p } 0 18 {A175R:C -> A176R:C: adjacent_5p } 0 19 {A176R:C -> A175R:C: adjacent_3p } 0 20 {A176R:C -> A177R:C: adjacent_5p } 0 21 {A177R:C -> A176R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A149R:A 0 1 A150R:C 0 2 A151R:A 0 3 A152R:A 0 4 A169R:C 0 5 A170R:U 0 6 A171R:A 0 7 A172R:A 0 [Edges] 0 {A149R:A -> A150R:C: adjacent_5p upward } 0 1 {A150R:C -> A149R:A: adjacent_3p downward } 0 2 {A149R:A -> A172R:A: pairing antiparallel trans V Ww/Hh } 0 3 {A172R:A -> A149R:A: pairing antiparallel trans V Hh/Ww } 0 4 {A150R:C -> A151R:A: adjacent_5p } 0 5 {A151R:A -> A150R:C: adjacent_3p } 0 6 {A150R:C -> A171R:A: pairing antiparallel trans XXV Ww/Hh } 0 7 {A171R:A -> A150R:C: pairing antiparallel trans XXV Hh/Ww } 0 8 {A151R:A -> A152R:A: adjacent_5p upward } 0 9 {A152R:A -> A151R:A: adjacent_3p downward } 0 10 {A151R:A -> A170R:U: pairing antiparallel trans XXIV Hh/Ws } 0 11 {A170R:U -> A151R:A: pairing antiparallel trans XXIV Ws/Hh } 0 12 {A152R:A -> A169R:C: pairing antiparallel trans XXV Hh/Ww } 0 13 {A169R:C -> A152R:A: pairing antiparallel trans XXV Ww/Hh } 0 14 {A169R:C -> A170R:U: adjacent_5p upward } 0 15 {A170R:U -> A169R:C: adjacent_3p downward } 0 16 {A170R:U -> A171R:A: adjacent_5p } 0 17 {A171R:A -> A170R:U: adjacent_3p } 0 18 {A171R:A -> A172R:A: adjacent_5p upward } 0 19 {A172R:A -> A171R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A150R:C 0 1 A151R:A 0 2 A152R:A 0 3 A153R:C 0 4 A168R:G 0 5 A169R:C 0 6 A170R:U 0 7 A171R:A 0 [Edges] 0 {A150R:C -> A151R:A: adjacent_5p } 0 1 {A151R:A -> A150R:C: adjacent_3p } 0 2 {A150R:C -> A171R:A: pairing antiparallel trans XXV Ww/Hh } 0 3 {A171R:A -> A150R:C: pairing antiparallel trans XXV Hh/Ww } 0 4 {A151R:A -> A152R:A: adjacent_5p upward } 0 5 {A152R:A -> A151R:A: adjacent_3p downward } 0 6 {A151R:A -> A170R:U: pairing antiparallel trans XXIV Hh/Ws } 0 7 {A170R:U -> A151R:A: pairing antiparallel trans XXIV Ws/Hh } 0 8 {A152R:A -> A153R:C: adjacent_5p upward } 0 9 {A153R:C -> A152R:A: adjacent_3p downward } 0 10 {A152R:A -> A169R:C: pairing antiparallel trans XXV Hh/Ww } 0 11 {A169R:C -> A152R:A: pairing antiparallel trans XXV Ww/Hh } 0 12 {A153R:C -> A168R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A168R:G -> A153R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A168R:G -> A169R:C: adjacent_5p upward } 0 15 {A169R:C -> A168R:G: adjacent_3p downward } 0 16 {A169R:C -> A170R:U: adjacent_5p upward } 0 17 {A170R:U -> A169R:C: adjacent_3p downward } 0 18 {A170R:U -> A171R:A: adjacent_5p } 0 19 {A171R:A -> A170R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A151R:A 0 1 A152R:A 0 2 A153R:C 0 3 A154R:C 0 4 A167R:G 0 5 A168R:G 0 6 A169R:C 0 7 A170R:U 0 [Edges] 0 {A151R:A -> A152R:A: adjacent_5p upward } 0 1 {A152R:A -> A151R:A: adjacent_3p downward } 0 2 {A151R:A -> A170R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {A170R:U -> A151R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {A152R:A -> A153R:C: adjacent_5p upward } 0 5 {A153R:C -> A152R:A: adjacent_3p downward } 0 6 {A152R:A -> A169R:C: pairing antiparallel trans XXV Hh/Ww } 0 7 {A169R:C -> A152R:A: pairing antiparallel trans XXV Ww/Hh } 0 8 {A153R:C -> A154R:C: adjacent_5p upward } 0 9 {A154R:C -> A153R:C: adjacent_3p downward } 0 10 {A153R:C -> A168R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A168R:G -> A153R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A154R:C -> A167R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A167R:G -> A154R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A167R:G -> A168R:G: adjacent_5p upward } 0 15 {A168R:G -> A167R:G: adjacent_3p downward } 0 16 {A168R:G -> A169R:C: adjacent_5p upward } 0 17 {A169R:C -> A168R:G: adjacent_3p downward } 0 18 {A169R:C -> A170R:U: adjacent_5p upward } 0 19 {A170R:U -> A169R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A152R:A 0 1 A153R:C 0 2 A154R:C 0 3 A155R:C 0 4 A166R:G 0 5 A167R:G 0 6 A168R:G 0 7 A169R:C 0 [Edges] 0 {A152R:A -> A153R:C: adjacent_5p upward } 0 1 {A153R:C -> A152R:A: adjacent_3p downward } 0 2 {A152R:A -> A169R:C: pairing antiparallel trans XXV Hh/Ww } 0 3 {A169R:C -> A152R:A: pairing antiparallel trans XXV Ww/Hh } 0 4 {A153R:C -> A154R:C: adjacent_5p upward } 0 5 {A154R:C -> A153R:C: adjacent_3p downward } 0 6 {A153R:C -> A168R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A168R:G -> A153R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A154R:C -> A155R:C: adjacent_5p upward } 0 9 {A155R:C -> A154R:C: adjacent_3p downward } 0 10 {A154R:C -> A167R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A167R:G -> A154R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A155R:C -> A166R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A166R:G -> A155R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A166R:G -> A167R:G: adjacent_5p upward } 0 15 {A167R:G -> A166R:G: adjacent_3p downward } 0 16 {A167R:G -> A168R:G: adjacent_5p upward } 0 17 {A168R:G -> A167R:G: adjacent_3p downward } 0 18 {A168R:G -> A169R:C: adjacent_5p upward } 0 19 {A169R:C -> A168R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A153R:C 0 1 A154R:C 0 2 A155R:C 0 3 A156R:G 0 4 A165R:C 0 5 A166R:G 0 6 A167R:G 0 7 A168R:G 0 [Edges] 0 {A153R:C -> A154R:C: adjacent_5p upward } 0 1 {A154R:C -> A153R:C: adjacent_3p downward } 0 2 {A153R:C -> A168R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A168R:G -> A153R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A154R:C -> A155R:C: adjacent_5p upward } 0 5 {A155R:C -> A154R:C: adjacent_3p downward } 0 6 {A154R:C -> A167R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A167R:G -> A154R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A155R:C -> A156R:G: adjacent_5p } 0 9 {A156R:G -> A155R:C: adjacent_3p } 0 10 {A155R:C -> A166R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A166R:G -> A155R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A156R:G -> A165R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A165R:C -> A156R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A156R:G -> A166R:G: outward } 0 15 {A166R:G -> A156R:G: outward } 0 16 {A165R:C -> A166R:G: adjacent_5p upward } 0 17 {A166R:G -> A165R:C: adjacent_3p downward } 0 18 {A166R:G -> A167R:G: adjacent_5p upward } 0 19 {A167R:G -> A166R:G: adjacent_3p downward } 0 20 {A167R:G -> A168R:G: adjacent_5p upward } 0 21 {A168R:G -> A167R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A154R:C 0 1 A155R:C 0 2 A156R:G 0 3 A157R:G 0 4 A164R:U 0 5 A165R:C 0 6 A166R:G 0 7 A167R:G 0 [Edges] 0 {A154R:C -> A155R:C: adjacent_5p upward } 0 1 {A155R:C -> A154R:C: adjacent_3p downward } 0 2 {A154R:C -> A167R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A167R:G -> A154R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A155R:C -> A156R:G: adjacent_5p } 0 5 {A156R:G -> A155R:C: adjacent_3p } 0 6 {A155R:C -> A166R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A166R:G -> A155R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A156R:G -> A157R:G: adjacent_5p upward } 0 9 {A157R:G -> A156R:G: adjacent_3p downward } 0 10 {A156R:G -> A165R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A165R:C -> A156R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A156R:G -> A166R:G: outward } 0 13 {A166R:G -> A156R:G: outward } 0 14 {A157R:G -> A164R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A164R:U -> A157R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A164R:U -> A165R:C: adjacent_5p } 0 17 {A165R:C -> A164R:U: adjacent_3p } 0 18 {A165R:C -> A166R:G: adjacent_5p upward } 0 19 {A166R:G -> A165R:C: adjacent_3p downward } 0 20 {A166R:G -> A167R:G: adjacent_5p upward } 0 21 {A167R:G -> A166R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A155R:C 0 1 A156R:G 0 2 A157R:G 0 3 A158R:G 0 4 A163R:C 0 5 A164R:U 0 6 A165R:C 0 7 A166R:G 0 [Edges] 0 {A155R:C -> A156R:G: adjacent_5p } 0 1 {A156R:G -> A155R:C: adjacent_3p } 0 2 {A155R:C -> A166R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A166R:G -> A155R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A156R:G -> A157R:G: adjacent_5p upward } 0 5 {A157R:G -> A156R:G: adjacent_3p downward } 0 6 {A156R:G -> A165R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A165R:C -> A156R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A156R:G -> A166R:G: outward } 0 9 {A166R:G -> A156R:G: outward } 0 10 {A157R:G -> A158R:G: adjacent_5p upward } 0 11 {A158R:G -> A157R:G: adjacent_3p downward } 0 12 {A157R:G -> A164R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A164R:U -> A157R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A158R:G -> A163R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A163R:C -> A158R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A163R:C -> A164R:U: adjacent_5p upward } 0 17 {A164R:U -> A163R:C: adjacent_3p downward } 0 18 {A164R:U -> A165R:C: adjacent_5p } 0 19 {A165R:C -> A164R:U: adjacent_3p } 0 20 {A165R:C -> A166R:G: adjacent_5p upward } 0 21 {A166R:G -> A165R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A156R:G 0 1 A157R:G 0 2 A158R:G 0 3 A159R:G 0 4 A162R:A 0 5 A163R:C 0 6 A164R:U 0 7 A165R:C 0 [Edges] 0 {A156R:G -> A157R:G: adjacent_5p upward } 0 1 {A157R:G -> A156R:G: adjacent_3p downward } 0 2 {A156R:G -> A165R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A165R:C -> A156R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A157R:G -> A158R:G: adjacent_5p upward } 0 5 {A158R:G -> A157R:G: adjacent_3p downward } 0 6 {A157R:G -> A164R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A164R:U -> A157R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A158R:G -> A159R:G: adjacent_5p upward } 0 9 {A159R:G -> A158R:G: adjacent_3p downward } 0 10 {A158R:G -> A163R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A163R:C -> A158R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A159R:G -> A162R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {A162R:A -> A159R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {A162R:A -> A163R:C: adjacent_5p } 0 15 {A163R:C -> A162R:A: adjacent_3p } 0 16 {A163R:C -> A164R:U: adjacent_5p upward } 0 17 {A164R:U -> A163R:C: adjacent_3p downward } 0 18 {A164R:U -> A165R:C: adjacent_5p } 0 19 {A165R:C -> A164R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A183R:G 0 1 A184R:G 0 2 A185R:A 0 3 A186R:C 0 4 A191R:G 0 5 A192R:U 0 6 A193R:C 0 7 A194R:C 0 [Edges] 0 {A183R:G -> A184R:G: adjacent_5p upward } 0 1 {A184R:G -> A183R:G: adjacent_3p downward } 0 2 {A183R:G -> A194R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A194R:C -> A183R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A184R:G -> A185R:A: adjacent_5p upward } 0 5 {A185R:A -> A184R:G: adjacent_3p downward } 0 6 {A184R:G -> A193R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A193R:C -> A184R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A185R:A -> A186R:C: adjacent_5p upward } 0 9 {A186R:C -> A185R:A: adjacent_3p downward } 0 10 {A185R:A -> A192R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A192R:U -> A185R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A186R:C -> A191R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A191R:G -> A186R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A191R:G -> A192R:U: adjacent_5p upward } 0 15 {A192R:U -> A191R:G: adjacent_3p downward } 0 16 {A192R:U -> A193R:C: adjacent_5p upward } 0 17 {A193R:C -> A192R:U: adjacent_3p downward } 0 18 {A193R:C -> A194R:C: adjacent_5p } 0 19 {A194R:C -> A193R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A184R:G 0 1 A185R:A 0 2 A186R:C 0 3 A187R:C 0 4 A190.LR:U 0 5 A191R:G 0 6 A192R:U 0 7 A193R:C 0 [Edges] 0 {A184R:G -> A185R:A: adjacent_5p upward } 0 1 {A185R:A -> A184R:G: adjacent_3p downward } 0 2 {A184R:G -> A193R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A193R:C -> A184R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A185R:A -> A186R:C: adjacent_5p upward } 0 5 {A186R:C -> A185R:A: adjacent_3p downward } 0 6 {A185R:A -> A192R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A192R:U -> A185R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A186R:C -> A187R:C: adjacent_5p upward } 0 9 {A187R:C -> A186R:C: adjacent_3p downward } 0 10 {A186R:C -> A191R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A191R:G -> A186R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A187R:C -> A190.LR:U: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {A190.LR:U -> A187R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {A190.LR:U -> A191R:G: adjacent_5p upward } 0 15 {A191R:G -> A190.LR:U: adjacent_3p downward } 0 16 {A191R:G -> A192R:U: adjacent_5p upward } 0 17 {A192R:U -> A191R:G: adjacent_3p downward } 0 18 {A192R:U -> A193R:C: adjacent_5p upward } 0 19 {A193R:C -> A192R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A185R:A 0 1 A186R:C 0 2 A187R:C 0 3 A188R:C 0 4 A190.KR:G 0 5 A190.LR:U 0 6 A191R:G 0 7 A192R:U 0 [Edges] 0 {A185R:A -> A186R:C: adjacent_5p upward } 0 1 {A186R:C -> A185R:A: adjacent_3p downward } 0 2 {A185R:A -> A192R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A192R:U -> A185R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A186R:C -> A187R:C: adjacent_5p upward } 0 5 {A187R:C -> A186R:C: adjacent_3p downward } 0 6 {A186R:C -> A191R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A191R:G -> A186R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A187R:C -> A188R:C: adjacent_5p upward } 0 9 {A188R:C -> A187R:C: adjacent_3p downward } 0 10 {A187R:C -> A190.LR:U: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {A190.LR:U -> A187R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {A188R:C -> A190.KR:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A190.KR:G -> A188R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A190.KR:G -> A190.LR:U: adjacent_5p upward } 0 15 {A190.LR:U -> A190.KR:G: adjacent_3p downward } 0 16 {A190.LR:U -> A191R:G: adjacent_5p upward } 0 17 {A191R:G -> A190.LR:U: adjacent_3p downward } 0 18 {A191R:G -> A192R:U: adjacent_5p upward } 0 19 {A192R:U -> A191R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A186R:C 0 1 A187R:C 0 2 A188R:C 0 3 A189R:G 0 4 A190.JR:U 0 5 A190.KR:G 0 6 A190.LR:U 0 7 A191R:G 0 [Edges] 0 {A186R:C -> A187R:C: adjacent_5p upward } 0 1 {A187R:C -> A186R:C: adjacent_3p downward } 0 2 {A186R:C -> A191R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A191R:G -> A186R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A187R:C -> A188R:C: adjacent_5p upward } 0 5 {A188R:C -> A187R:C: adjacent_3p downward } 0 6 {A187R:C -> A190.LR:U: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {A190.LR:U -> A187R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A188R:C -> A189R:G: adjacent_5p } 0 9 {A189R:G -> A188R:C: adjacent_3p } 0 10 {A188R:C -> A190.KR:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A190.KR:G -> A188R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A189R:G -> A190.JR:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A190.JR:U -> A189R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A189R:G -> A190.KR:G: outward } 0 15 {A190.KR:G -> A189R:G: outward } 0 16 {A190.JR:U -> A190.KR:G: adjacent_5p } 0 17 {A190.KR:G -> A190.JR:U: adjacent_3p } 0 18 {A190.KR:G -> A190.LR:U: adjacent_5p upward } 0 19 {A190.LR:U -> A190.KR:G: adjacent_3p downward } 0 20 {A190.LR:U -> A191R:G: adjacent_5p upward } 0 21 {A191R:G -> A190.LR:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A188R:C 0 1 A189R:G 0 2 A190R:C 0 3 A190.AR:C 0 4 A190.HR:G 0 5 A190.IR:G 0 6 A190.JR:U 0 7 A190.KR:G 0 [Edges] 0 {A188R:C -> A189R:G: adjacent_5p } 0 1 {A189R:G -> A188R:C: adjacent_3p } 0 2 {A188R:C -> A190.KR:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A190.KR:G -> A188R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A189R:G -> A190R:C: adjacent_5p } 0 5 {A190R:C -> A189R:G: adjacent_3p } 0 6 {A189R:G -> A190.JR:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A190.JR:U -> A189R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A189R:G -> A190.KR:G: outward } 0 9 {A190.KR:G -> A189R:G: outward } 0 10 {A190R:C -> A190.AR:C: adjacent_5p } 0 11 {A190.AR:C -> A190R:C: adjacent_3p } 0 12 {A190.AR:C -> A190.HR:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A190.HR:G -> A190.AR:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A190.HR:G -> A190.IR:G: adjacent_5p upward } 0 15 {A190.IR:G -> A190.HR:G: adjacent_3p downward } 0 16 {A190.IR:G -> A190.JR:U: adjacent_5p upward } 0 17 {A190.JR:U -> A190.IR:G: adjacent_3p downward } 0 18 {A190.JR:U -> A190.KR:G: adjacent_5p } 0 19 {A190.KR:G -> A190.JR:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 9 . . . . 19 . [GraphModel] [Vertices] 0 A189R:G 0 1 A190R:C 0 2 A190.AR:C 0 3 A190.BR:C 0 4 A190.GR:G 0 5 A190.HR:G 0 6 A190.IR:G 0 7 A190.JR:U 0 [Edges] 0 {A189R:G -> A190R:C: adjacent_5p } 0 1 {A190R:C -> A189R:G: adjacent_3p } 0 2 {A189R:G -> A190.JR:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A190.JR:U -> A189R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A190R:C -> A190.AR:C: adjacent_5p } 0 5 {A190.AR:C -> A190R:C: adjacent_3p } 0 6 {A190.AR:C -> A190.BR:C: adjacent_5p upward } 0 7 {A190.BR:C -> A190.AR:C: adjacent_3p downward } 0 8 {A190.AR:C -> A190.HR:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A190.HR:G -> A190.AR:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A190.BR:C -> A190.GR:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A190.GR:G -> A190.BR:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A190.GR:G -> A190.HR:G: adjacent_5p upward } 0 13 {A190.HR:G -> A190.GR:G: adjacent_3p downward } 0 14 {A190.HR:G -> A190.IR:G: adjacent_5p upward } 0 15 {A190.IR:G -> A190.HR:G: adjacent_3p downward } 0 16 {A190.IR:G -> A190.JR:U: adjacent_5p upward } 0 17 {A190.JR:U -> A190.IR:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A198R:G 0 1 A199R:G 0 2 A200R:G 0 3 A201R:C 0 4 A216R:G 0 5 A217R:C 0 6 A218R:C 0 7 A219R:C 0 [Edges] 0 {A198R:G -> A199R:G: adjacent_5p upward } 0 1 {A199R:G -> A198R:G: adjacent_3p downward } 0 2 {A198R:G -> A219R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A219R:C -> A198R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A199R:G -> A200R:G: adjacent_5p upward } 0 5 {A200R:G -> A199R:G: adjacent_3p downward } 0 6 {A199R:G -> A218R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A218R:C -> A199R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A200R:G -> A201R:C: adjacent_5p upward } 0 9 {A201R:C -> A200R:G: adjacent_3p downward } 0 10 {A200R:G -> A217R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A217R:C -> A200R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A201R:C -> A216R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A216R:G -> A201R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A216R:G -> A217R:C: adjacent_5p upward } 0 15 {A217R:C -> A216R:G: adjacent_3p downward } 0 16 {A217R:C -> A218R:C: adjacent_5p } 0 17 {A218R:C -> A217R:C: adjacent_3p } 0 18 {A218R:C -> A219R:C: adjacent_5p } 0 19 {A219R:C -> A218R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A252R:U 0 1 A253R:U 0 2 A254R:G 0 3 A255R:G 0 4 A271R:C 0 5 A272R:C 0 6 A273R:A 0 7 A274R:A 0 [Edges] 0 {A252R:U -> A253R:U: adjacent_5p } 0 1 {A253R:U -> A252R:U: adjacent_3p } 0 2 {A252R:U -> A274R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A274R:A -> A252R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A253R:U -> A254R:G: adjacent_5p } 0 5 {A254R:G -> A253R:U: adjacent_3p } 0 6 {A253R:U -> A273R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A273R:A -> A253R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A254R:G -> A255R:G: adjacent_5p upward } 0 9 {A255R:G -> A254R:G: adjacent_3p downward } 0 10 {A254R:G -> A272R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A272R:C -> A254R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A254R:G -> A273R:A: outward } 0 13 {A273R:A -> A254R:G: outward } 0 14 {A255R:G -> A271R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A271R:C -> A255R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A271R:C -> A272R:C: adjacent_5p } 0 17 {A272R:C -> A271R:C: adjacent_3p } 0 18 {A272R:C -> A273R:A: adjacent_5p upward } 0 19 {A273R:A -> A272R:C: adjacent_3p downward } 0 20 {A273R:A -> A274R:A: adjacent_5p upward } 0 21 {A274R:A -> A273R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A253R:U 0 1 A254R:G 0 2 A255R:G 0 3 A256R:U 0 4 A270R:A 0 5 A271R:C 0 6 A272R:C 0 7 A273R:A 0 [Edges] 0 {A253R:U -> A254R:G: adjacent_5p } 0 1 {A254R:G -> A253R:U: adjacent_3p } 0 2 {A253R:U -> A273R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A273R:A -> A253R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A254R:G -> A255R:G: adjacent_5p upward } 0 5 {A255R:G -> A254R:G: adjacent_3p downward } 0 6 {A254R:G -> A272R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A272R:C -> A254R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A254R:G -> A273R:A: outward } 0 9 {A273R:A -> A254R:G: outward } 0 10 {A255R:G -> A256R:U: adjacent_5p upward } 0 11 {A256R:U -> A255R:G: adjacent_3p downward } 0 12 {A255R:G -> A271R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A271R:C -> A255R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A256R:U -> A270R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A270R:A -> A256R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A270R:A -> A271R:C: adjacent_5p upward } 0 17 {A271R:C -> A270R:A: adjacent_3p downward } 0 18 {A271R:C -> A272R:C: adjacent_5p } 0 19 {A272R:C -> A271R:C: adjacent_3p } 0 20 {A272R:C -> A273R:A: adjacent_5p upward } 0 21 {A273R:A -> A272R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A254R:G 0 1 A255R:G 0 2 A256R:U 0 3 A257R:G 0 4 A269R:C 0 5 A270R:A 0 6 A271R:C 0 7 A272R:C 0 [Edges] 0 {A254R:G -> A255R:G: adjacent_5p upward } 0 1 {A255R:G -> A254R:G: adjacent_3p downward } 0 2 {A254R:G -> A272R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A272R:C -> A254R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A255R:G -> A256R:U: adjacent_5p upward } 0 5 {A256R:U -> A255R:G: adjacent_3p downward } 0 6 {A255R:G -> A271R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A271R:C -> A255R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A256R:U -> A257R:G: adjacent_5p upward } 0 9 {A257R:G -> A256R:U: adjacent_3p downward } 0 10 {A256R:U -> A270R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A270R:A -> A256R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A257R:G -> A269R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A269R:C -> A257R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A257R:G -> A270R:A: outward } 0 15 {A270R:A -> A257R:G: outward } 0 16 {A269R:C -> A270R:A: adjacent_5p } 0 17 {A270R:A -> A269R:C: adjacent_3p } 0 18 {A270R:A -> A271R:C: adjacent_5p upward } 0 19 {A271R:C -> A270R:A: adjacent_3p downward } 0 20 {A271R:C -> A272R:C: adjacent_5p } 0 21 {A272R:C -> A271R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A255R:G 0 1 A256R:U 0 2 A257R:G 0 3 A258R:G 0 4 A268R:C 0 5 A269R:C 0 6 A270R:A 0 7 A271R:C 0 [Edges] 0 {A255R:G -> A256R:U: adjacent_5p upward } 0 1 {A256R:U -> A255R:G: adjacent_3p downward } 0 2 {A255R:G -> A271R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A271R:C -> A255R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A256R:U -> A257R:G: adjacent_5p upward } 0 5 {A257R:G -> A256R:U: adjacent_3p downward } 0 6 {A256R:U -> A270R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A270R:A -> A256R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A257R:G -> A258R:G: adjacent_5p upward } 0 9 {A258R:G -> A257R:G: adjacent_3p downward } 0 10 {A257R:G -> A269R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A269R:C -> A257R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A257R:G -> A270R:A: outward } 0 13 {A270R:A -> A257R:G: outward } 0 14 {A258R:G -> A268R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A268R:C -> A258R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A268R:C -> A269R:C: adjacent_5p } 0 17 {A269R:C -> A268R:C: adjacent_3p } 0 18 {A269R:C -> A270R:A: adjacent_5p } 0 19 {A270R:A -> A269R:C: adjacent_3p } 0 20 {A270R:A -> A271R:C: adjacent_5p upward } 0 21 {A271R:C -> A270R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A256R:U 0 1 A257R:G 0 2 A258R:G 0 3 A259R:G 0 4 A267R:C 0 5 A268R:C 0 6 A269R:C 0 7 A270R:A 0 [Edges] 0 {A256R:U -> A257R:G: adjacent_5p upward } 0 1 {A257R:G -> A256R:U: adjacent_3p downward } 0 2 {A256R:U -> A270R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A270R:A -> A256R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A257R:G -> A258R:G: adjacent_5p upward } 0 5 {A258R:G -> A257R:G: adjacent_3p downward } 0 6 {A257R:G -> A269R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A269R:C -> A257R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A257R:G -> A270R:A: outward } 0 9 {A270R:A -> A257R:G: outward } 0 10 {A258R:G -> A259R:G: adjacent_5p upward } 0 11 {A259R:G -> A258R:G: adjacent_3p downward } 0 12 {A258R:G -> A268R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A268R:C -> A258R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A259R:G -> A267R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A267R:C -> A259R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A267R:C -> A268R:C: adjacent_5p upward } 0 17 {A268R:C -> A267R:C: adjacent_3p downward } 0 18 {A268R:C -> A269R:C: adjacent_5p } 0 19 {A269R:C -> A268R:C: adjacent_3p } 0 20 {A269R:C -> A270R:A: adjacent_5p } 0 21 {A270R:A -> A269R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A289R:G 0 1 A290R:C 0 2 A291R:C 0 3 A292R:G 0 4 A308R:C 0 5 A309R:G 0 6 A310R:G 0 7 A311R:C 0 [Edges] 0 {A289R:G -> A290R:C: adjacent_5p upward } 0 1 {A290R:C -> A289R:G: adjacent_3p downward } 0 2 {A289R:G -> A311R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A311R:C -> A289R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A290R:C -> A291R:C: adjacent_5p upward } 0 5 {A291R:C -> A290R:C: adjacent_3p downward } 0 6 {A290R:C -> A310R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A310R:G -> A290R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A291R:C -> A292R:G: adjacent_5p } 0 9 {A292R:G -> A291R:C: adjacent_3p } 0 10 {A291R:C -> A309R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A309R:G -> A291R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A292R:G -> A308R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A308R:C -> A292R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A292R:G -> A309R:G: outward } 0 15 {A309R:G -> A292R:G: outward } 0 16 {A308R:C -> A309R:G: adjacent_5p upward } 0 17 {A309R:G -> A308R:C: adjacent_3p downward } 0 18 {A309R:G -> A310R:G: adjacent_5p upward } 0 19 {A310R:G -> A309R:G: adjacent_3p downward } 0 20 {A310R:G -> A311R:C: adjacent_5p upward } 0 21 {A311R:C -> A310R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A292R:G 0 1 A293R:G 0 2 A294R:U 0 3 A295R:C 0 4 A302R:G 0 5 A303R:A 0 6 A304R:U 0 7 A305R:G 0 [Edges] 0 {A292R:G -> A293R:G: adjacent_5p } 0 1 {A293R:G -> A292R:G: adjacent_3p } 0 2 {A292R:G -> A305R:G: pairing antiparallel trans one_hbond 108 Hh/Sw } 0 3 {A305R:G -> A292R:G: pairing antiparallel trans one_hbond 108 Sw/Hh } 0 4 {A293R:G -> A294R:U: adjacent_5p upward } 0 5 {A294R:U -> A293R:G: adjacent_3p downward } 0 6 {A293R:G -> A304R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A304R:U -> A293R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A293R:G -> A305R:G: outward } 0 9 {A305R:G -> A293R:G: outward } 0 10 {A294R:U -> A295R:C: adjacent_5p upward } 0 11 {A295R:C -> A294R:U: adjacent_3p downward } 0 12 {A294R:U -> A303R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A303R:A -> A294R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A295R:C -> A302R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A302R:G -> A295R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A302R:G -> A303R:A: adjacent_5p upward } 0 17 {A303R:A -> A302R:G: adjacent_3p downward } 0 18 {A303R:A -> A304R:U: adjacent_5p upward } 0 19 {A304R:U -> A303R:A: adjacent_3p downward } 0 20 {A304R:U -> A305R:G: adjacent_5p upward } 0 21 {A305R:G -> A304R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A293R:G 0 1 A294R:U 0 2 A295R:C 0 3 A296R:U 0 4 A301R:G 0 5 A302R:G 0 6 A303R:A 0 7 A304R:U 0 [Edges] 0 {A293R:G -> A294R:U: adjacent_5p upward } 0 1 {A294R:U -> A293R:G: adjacent_3p downward } 0 2 {A293R:G -> A304R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A304R:U -> A293R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A294R:U -> A295R:C: adjacent_5p upward } 0 5 {A295R:C -> A294R:U: adjacent_3p downward } 0 6 {A294R:U -> A303R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A303R:A -> A294R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A295R:C -> A296R:U: adjacent_5p upward } 0 9 {A296R:U -> A295R:C: adjacent_3p downward } 0 10 {A295R:C -> A302R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A302R:G -> A295R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A296R:U -> A301R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A301R:G -> A296R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A301R:G -> A302R:G: adjacent_5p upward } 0 15 {A302R:G -> A301R:G: adjacent_3p downward } 0 16 {A302R:G -> A303R:A: adjacent_5p upward } 0 17 {A303R:A -> A302R:G: adjacent_3p downward } 0 18 {A303R:A -> A304R:U: adjacent_5p upward } 0 19 {A304R:U -> A303R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A294R:U 0 1 A295R:C 0 2 A296R:U 0 3 A297R:G 0 4 A300R:A 0 5 A301R:G 0 6 A302R:G 0 7 A303R:A 0 [Edges] 0 {A294R:U -> A295R:C: adjacent_5p upward } 0 1 {A295R:C -> A294R:U: adjacent_3p downward } 0 2 {A294R:U -> A303R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A303R:A -> A294R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A295R:C -> A296R:U: adjacent_5p upward } 0 5 {A296R:U -> A295R:C: adjacent_3p downward } 0 6 {A295R:C -> A302R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A302R:G -> A295R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A296R:U -> A297R:G: adjacent_5p upward } 0 9 {A297R:G -> A296R:U: adjacent_3p downward } 0 10 {A296R:U -> A301R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A301R:G -> A296R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A297R:G -> A300R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A300R:A -> A297R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A300R:A -> A301R:G: adjacent_5p upward } 0 15 {A301R:G -> A300R:A: adjacent_3p downward } 0 16 {A301R:G -> A302R:G: adjacent_5p upward } 0 17 {A302R:G -> A301R:G: adjacent_3p downward } 0 18 {A302R:G -> A303R:A: adjacent_5p upward } 0 19 {A303R:A -> A302R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A316R:G 0 1 A317R:G 0 2 A318R:G 0 3 A319R:G 0 4 A334R:C 0 5 A335R:C 0 6 A336R:C 0 7 A337R:C 0 [Edges] 0 {A316R:G -> A317R:G: adjacent_5p upward } 0 1 {A317R:G -> A316R:G: adjacent_3p downward } 0 2 {A316R:G -> A337R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A337R:C -> A316R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A317R:G -> A318R:G: adjacent_5p upward } 0 5 {A318R:G -> A317R:G: adjacent_3p downward } 0 6 {A317R:G -> A336R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A336R:C -> A317R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A318R:G -> A319R:G: adjacent_5p upward } 0 9 {A319R:G -> A318R:G: adjacent_3p downward } 0 10 {A318R:G -> A335R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A335R:C -> A318R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A319R:G -> A334R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A334R:C -> A319R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A334R:C -> A335R:C: adjacent_5p upward } 0 15 {A335R:C -> A334R:C: adjacent_3p downward } 0 16 {A335R:C -> A336R:C: adjacent_5p upward } 0 17 {A336R:C -> A335R:C: adjacent_3p downward } 0 18 {A336R:C -> A337R:C: adjacent_5p upward } 0 19 {A337R:C -> A336R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A317R:G 0 1 A318R:G 0 2 A319R:G 0 3 A320R:C 0 4 A333R:G 0 5 A334R:C 0 6 A335R:C 0 7 A336R:C 0 [Edges] 0 {A317R:G -> A318R:G: adjacent_5p upward } 0 1 {A318R:G -> A317R:G: adjacent_3p downward } 0 2 {A317R:G -> A336R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A336R:C -> A317R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A318R:G -> A319R:G: adjacent_5p upward } 0 5 {A319R:G -> A318R:G: adjacent_3p downward } 0 6 {A318R:G -> A335R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A335R:C -> A318R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A319R:G -> A320R:C: adjacent_5p upward } 0 9 {A320R:C -> A319R:G: adjacent_3p downward } 0 10 {A319R:G -> A334R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A334R:C -> A319R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A320R:C -> A333R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A333R:G -> A320R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A333R:G -> A334R:C: adjacent_5p upward } 0 15 {A334R:C -> A333R:G: adjacent_3p downward } 0 16 {A334R:C -> A335R:C: adjacent_5p upward } 0 17 {A335R:C -> A334R:C: adjacent_3p downward } 0 18 {A335R:C -> A336R:C: adjacent_5p upward } 0 19 {A336R:C -> A335R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A318R:G 0 1 A319R:G 0 2 A320R:C 0 3 A321R:A 0 4 A332R:G 0 5 A333R:G 0 6 A334R:C 0 7 A335R:C 0 [Edges] 0 {A318R:G -> A319R:G: adjacent_5p upward } 0 1 {A319R:G -> A318R:G: adjacent_3p downward } 0 2 {A318R:G -> A335R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A335R:C -> A318R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A319R:G -> A320R:C: adjacent_5p upward } 0 5 {A320R:C -> A319R:G: adjacent_3p downward } 0 6 {A319R:G -> A334R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A334R:C -> A319R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A320R:C -> A321R:A: adjacent_5p upward } 0 9 {A321R:A -> A320R:C: adjacent_3p downward } 0 10 {A320R:C -> A333R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A333R:G -> A320R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A321R:A -> A332R:G: pairing antiparallel cis VIII Ww/Ww } 0 13 {A332R:G -> A321R:A: pairing antiparallel cis VIII Ww/Ww } 0 14 {A321R:A -> A333R:G: outward } 0 15 {A333R:G -> A321R:A: outward } 0 16 {A332R:G -> A333R:G: adjacent_5p upward } 0 17 {A333R:G -> A332R:G: adjacent_3p downward } 0 18 {A333R:G -> A334R:C: adjacent_5p upward } 0 19 {A334R:C -> A333R:G: adjacent_3p downward } 0 20 {A334R:C -> A335R:C: adjacent_5p upward } 0 21 {A335R:C -> A334R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A338R:A 0 1 A339R:C 0 2 A340R:U 0 3 A341R:C 0 4 A348R:G 0 5 A349R:A 0 6 A350R:G 0 7 A351R:G 0 [Edges] 0 {A338R:A -> A339R:C: adjacent_5p upward } 0 1 {A339R:C -> A338R:A: adjacent_3p downward } 0 2 {A338R:A -> A351R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {A351R:G -> A338R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A339R:C -> A340R:U: adjacent_5p upward } 0 5 {A340R:U -> A339R:C: adjacent_3p downward } 0 6 {A339R:C -> A350R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A350R:G -> A339R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A340R:U -> A341R:C: adjacent_5p upward } 0 9 {A341R:C -> A340R:U: adjacent_3p downward } 0 10 {A340R:U -> A349R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A349R:A -> A340R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A341R:C -> A348R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A348R:G -> A341R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A348R:G -> A349R:A: adjacent_5p upward } 0 15 {A349R:A -> A348R:G: adjacent_3p downward } 0 16 {A349R:A -> A350R:G: adjacent_5p upward } 0 17 {A350R:G -> A349R:A: adjacent_3p downward } 0 18 {A350R:G -> A351R:G: adjacent_5p upward } 0 19 {A351R:G -> A350R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A339R:C 0 1 A340R:U 0 2 A341R:C 0 3 A342R:C 0 4 A347R:G 0 5 A348R:G 0 6 A349R:A 0 7 A350R:G 0 [Edges] 0 {A339R:C -> A340R:U: adjacent_5p upward } 0 1 {A340R:U -> A339R:C: adjacent_3p downward } 0 2 {A339R:C -> A350R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A350R:G -> A339R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A340R:U -> A341R:C: adjacent_5p upward } 0 5 {A341R:C -> A340R:U: adjacent_3p downward } 0 6 {A340R:U -> A349R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A349R:A -> A340R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A341R:C -> A342R:C: adjacent_5p } 0 9 {A342R:C -> A341R:C: adjacent_3p } 0 10 {A341R:C -> A348R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A348R:G -> A341R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A342R:C -> A347R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A347R:G -> A342R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A347R:G -> A348R:G: adjacent_5p upward } 0 15 {A348R:G -> A347R:G: adjacent_3p downward } 0 16 {A348R:G -> A349R:A: adjacent_5p upward } 0 17 {A349R:A -> A348R:G: adjacent_3p downward } 0 18 {A349R:A -> A350R:G: adjacent_5p upward } 0 19 {A350R:G -> A349R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A340R:U 0 1 A341R:C 0 2 A342R:C 0 3 A343R:U 0 4 A346R:G 0 5 A347R:G 0 6 A348R:G 0 7 A349R:A 0 [Edges] 0 {A340R:U -> A341R:C: adjacent_5p upward } 0 1 {A341R:C -> A340R:U: adjacent_3p downward } 0 2 {A340R:U -> A349R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A349R:A -> A340R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A341R:C -> A342R:C: adjacent_5p } 0 5 {A342R:C -> A341R:C: adjacent_3p } 0 6 {A341R:C -> A348R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A348R:G -> A341R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A342R:C -> A343R:U: adjacent_5p upward } 0 9 {A343R:U -> A342R:C: adjacent_3p downward } 0 10 {A342R:C -> A347R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A347R:G -> A342R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A343R:U -> A346R:G: pairing parallel trans 87 Bs/Ww } 0 13 {A346R:G -> A343R:U: pairing parallel trans 87 Ww/Bs } 0 14 {A346R:G -> A347R:G: adjacent_5p } 0 15 {A347R:G -> A346R:G: adjacent_3p } 0 16 {A347R:G -> A348R:G: adjacent_5p upward } 0 17 {A348R:G -> A347R:G: adjacent_3p downward } 0 18 {A348R:G -> A349R:A: adjacent_5p upward } 0 19 {A349R:A -> A348R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A369R:C 0 1 A370R:C 0 2 A371R:G 0 3 A372R:C 0 4 A389R:A 0 5 A390R:C 0 6 A391R:G 0 7 A392R:G 0 [Edges] 0 {A369R:C -> A370R:C: adjacent_5p } 0 1 {A370R:C -> A369R:C: adjacent_3p } 0 2 {A369R:C -> A392R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A392R:G -> A369R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A370R:C -> A371R:G: adjacent_5p upward } 0 5 {A371R:G -> A370R:C: adjacent_3p downward } 0 6 {A370R:C -> A391R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A391R:G -> A370R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A371R:G -> A372R:C: adjacent_5p upward } 0 9 {A372R:C -> A371R:G: adjacent_3p downward } 0 10 {A371R:G -> A390R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A390R:C -> A371R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A371R:G -> A391R:G: outward } 0 13 {A391R:G -> A371R:G: outward } 0 14 {A372R:C -> A389R:A: pairing antiparallel trans XXV Ww/Hh } 0 15 {A389R:A -> A372R:C: pairing antiparallel trans XXV Hh/Ww } 0 16 {A389R:A -> A390R:C: adjacent_5p upward } 0 17 {A390R:C -> A389R:A: adjacent_3p downward } 0 18 {A390R:C -> A391R:G: adjacent_5p upward } 0 19 {A391R:G -> A390R:C: adjacent_3p downward } 0 20 {A391R:G -> A392R:G: adjacent_5p upward } 0 21 {A392R:G -> A391R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A376R:G 0 1 A377R:G 0 2 A378R:G 0 3 A379R:C 0 4 A384R:G 0 5 A385R:C 0 6 A386R:C 0 7 A387R:U 0 [Edges] 0 {A376R:G -> A377R:G: adjacent_5p upward } 0 1 {A377R:G -> A376R:G: adjacent_3p downward } 0 2 {A376R:G -> A387R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A387R:U -> A376R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A377R:G -> A378R:G: adjacent_5p upward } 0 5 {A378R:G -> A377R:G: adjacent_3p downward } 0 6 {A377R:G -> A386R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A386R:C -> A377R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A378R:G -> A379R:C: adjacent_5p upward } 0 9 {A379R:C -> A378R:G: adjacent_3p downward } 0 10 {A378R:G -> A385R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A385R:C -> A378R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A379R:C -> A384R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A384R:G -> A379R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A384R:G -> A385R:C: adjacent_5p upward } 0 15 {A385R:C -> A384R:G: adjacent_3p downward } 0 16 {A385R:C -> A386R:C: adjacent_5p upward } 0 17 {A386R:C -> A385R:C: adjacent_3p downward } 0 18 {A386R:C -> A387R:U: adjacent_5p upward } 0 19 {A387R:U -> A386R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A377R:G 0 1 A378R:G 0 2 A379R:C 0 3 A380R:G 0 4 A383R:A 0 5 A384R:G 0 6 A385R:C 0 7 A386R:C 0 [Edges] 0 {A377R:G -> A378R:G: adjacent_5p upward } 0 1 {A378R:G -> A377R:G: adjacent_3p downward } 0 2 {A377R:G -> A386R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A386R:C -> A377R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A378R:G -> A379R:C: adjacent_5p upward } 0 5 {A379R:C -> A378R:G: adjacent_3p downward } 0 6 {A378R:G -> A385R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A385R:C -> A378R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A379R:C -> A380R:G: adjacent_5p upward } 0 9 {A380R:G -> A379R:C: adjacent_3p downward } 0 10 {A379R:C -> A384R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A384R:G -> A379R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A380R:G -> A383R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {A383R:A -> A380R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {A380R:G -> A384R:G: outward } 0 15 {A384R:G -> A380R:G: outward } 0 16 {A383R:A -> A384R:G: adjacent_5p } 0 17 {A384R:G -> A383R:A: adjacent_3p } 0 18 {A384R:G -> A385R:C: adjacent_5p upward } 0 19 {A385R:C -> A384R:G: adjacent_3p downward } 0 20 {A385R:C -> A386R:C: adjacent_5p upward } 0 21 {A386R:C -> A385R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A406R:G 0 1 A407R:G 0 2 A408R:A 0 3 A409R:G 0 4 A433R:C 0 5 A434R:U 0 6 A435R:C 0 7 A436R:C 0 [Edges] 0 {A406R:G -> A407R:G: adjacent_5p upward } 0 1 {A407R:G -> A406R:G: adjacent_3p downward } 0 2 {A406R:G -> A436R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A436R:C -> A406R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A407R:G -> A408R:A: adjacent_5p upward } 0 5 {A408R:A -> A407R:G: adjacent_3p downward } 0 6 {A407R:G -> A435R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A435R:C -> A407R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A408R:A -> A409R:G: adjacent_5p upward } 0 9 {A409R:G -> A408R:A: adjacent_3p downward } 0 10 {A408R:A -> A434R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A434R:U -> A408R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A409R:G -> A433R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A433R:C -> A409R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A433R:C -> A434R:U: adjacent_5p } 0 15 {A434R:U -> A433R:C: adjacent_3p } 0 16 {A434R:U -> A435R:C: adjacent_5p upward } 0 17 {A435R:C -> A434R:U: adjacent_3p downward } 0 18 {A435R:C -> A436R:C: adjacent_5p } 0 19 {A436R:C -> A435R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A407R:G 0 1 A408R:A 0 2 A409R:G 0 3 A410R:G 0 4 A432R:A 0 5 A433R:C 0 6 A434R:U 0 7 A435R:C 0 [Edges] 0 {A407R:G -> A408R:A: adjacent_5p upward } 0 1 {A408R:A -> A407R:G: adjacent_3p downward } 0 2 {A407R:G -> A435R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A435R:C -> A407R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A408R:A -> A409R:G: adjacent_5p upward } 0 5 {A409R:G -> A408R:A: adjacent_3p downward } 0 6 {A408R:A -> A434R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A434R:U -> A408R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A409R:G -> A410R:G: adjacent_5p upward } 0 9 {A410R:G -> A409R:G: adjacent_3p downward } 0 10 {A409R:G -> A433R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A433R:C -> A409R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A410R:G -> A432R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {A432R:A -> A410R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {A432R:A -> A433R:C: adjacent_5p upward } 0 15 {A433R:C -> A432R:A: adjacent_3p downward } 0 16 {A433R:C -> A434R:U: adjacent_5p } 0 17 {A434R:U -> A433R:C: adjacent_3p } 0 18 {A434R:U -> A435R:C: adjacent_5p upward } 0 19 {A435R:C -> A434R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A439R:A 0 1 A440R:A 0 2 A442R:C 0 3 A443R:C 0 4 A491R:G 0 5 A492R:G 0 6 A494R:G 0 7 A495R:U 0 [Edges] 0 {A439R:A -> A440R:A: adjacent_5p upward } 0 1 {A440R:A -> A439R:A: adjacent_3p downward } 0 2 {A439R:A -> A495R:U: pairing antiparallel trans XXIV Hh/Ww } 0 3 {A495R:U -> A439R:A: pairing antiparallel trans XXIV Ww/Hh } 0 4 {A440R:A -> A442R:C: adjacent_5p upward } 0 5 {A442R:C -> A440R:A: adjacent_3p downward } 0 6 {A440R:A -> A494R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {A494R:G -> A440R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {A440R:A -> A495R:U: outward } 0 9 {A495R:U -> A440R:A: outward } 0 10 {A442R:C -> A443R:C: adjacent_5p upward } 0 11 {A443R:C -> A442R:C: adjacent_3p downward } 0 12 {A442R:C -> A492R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A492R:G -> A442R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A443R:C -> A491R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A491R:G -> A443R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A491R:G -> A492R:G: adjacent_5p upward } 0 17 {A492R:G -> A491R:G: adjacent_3p downward } 0 18 {A492R:G -> A494R:G: adjacent_5p upward } 0 19 {A494R:G -> A492R:G: adjacent_3p downward } 0 20 {A494R:G -> A495R:U: adjacent_5p } 0 21 {A495R:U -> A494R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A440R:A 0 1 A442R:C 0 2 A443R:C 0 3 A444R:C 0 4 A490R:G 0 5 A491R:G 0 6 A492R:G 0 7 A494R:G 0 [Edges] 0 {A440R:A -> A442R:C: adjacent_5p upward } 0 1 {A442R:C -> A440R:A: adjacent_3p downward } 0 2 {A440R:A -> A494R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A494R:G -> A440R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A442R:C -> A443R:C: adjacent_5p upward } 0 5 {A443R:C -> A442R:C: adjacent_3p downward } 0 6 {A442R:C -> A492R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A492R:G -> A442R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A443R:C -> A444R:C: adjacent_5p upward } 0 9 {A444R:C -> A443R:C: adjacent_3p downward } 0 10 {A443R:C -> A491R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A491R:G -> A443R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A444R:C -> A490R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A490R:G -> A444R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A490R:G -> A491R:G: adjacent_5p upward } 0 15 {A491R:G -> A490R:G: adjacent_3p downward } 0 16 {A491R:G -> A492R:G: adjacent_5p upward } 0 17 {A492R:G -> A491R:G: adjacent_3p downward } 0 18 {A492R:G -> A494R:G: adjacent_5p upward } 0 19 {A494R:G -> A492R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A442R:C 0 1 A443R:C 0 2 A444R:C 0 3 A445R:G 0 4 A489R:C 0 5 A490R:G 0 6 A491R:G 0 7 A492R:G 0 [Edges] 0 {A442R:C -> A443R:C: adjacent_5p upward } 0 1 {A443R:C -> A442R:C: adjacent_3p downward } 0 2 {A442R:C -> A492R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A492R:G -> A442R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A443R:C -> A444R:C: adjacent_5p upward } 0 5 {A444R:C -> A443R:C: adjacent_3p downward } 0 6 {A443R:C -> A491R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A491R:G -> A443R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A444R:C -> A445R:G: adjacent_5p } 0 9 {A445R:G -> A444R:C: adjacent_3p } 0 10 {A444R:C -> A490R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A490R:G -> A444R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A445R:G -> A489R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A489R:C -> A445R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A445R:G -> A490R:G: outward } 0 15 {A490R:G -> A445R:G: outward } 0 16 {A489R:C -> A490R:G: adjacent_5p } 0 17 {A490R:G -> A489R:C: adjacent_3p } 0 18 {A490R:G -> A491R:G: adjacent_5p upward } 0 19 {A491R:G -> A490R:G: adjacent_3p downward } 0 20 {A491R:G -> A492R:G: adjacent_5p upward } 0 21 {A492R:G -> A491R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A443R:C 0 1 A444R:C 0 2 A445R:G 0 3 A446R:G 0 4 A488R:C 0 5 A489R:C 0 6 A490R:G 0 7 A491R:G 0 [Edges] 0 {A443R:C -> A444R:C: adjacent_5p upward } 0 1 {A444R:C -> A443R:C: adjacent_3p downward } 0 2 {A443R:C -> A491R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A491R:G -> A443R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A444R:C -> A445R:G: adjacent_5p } 0 5 {A445R:G -> A444R:C: adjacent_3p } 0 6 {A444R:C -> A490R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A490R:G -> A444R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A445R:G -> A446R:G: adjacent_5p upward } 0 9 {A446R:G -> A445R:G: adjacent_3p downward } 0 10 {A445R:G -> A489R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A489R:C -> A445R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A445R:G -> A490R:G: outward } 0 13 {A490R:G -> A445R:G: outward } 0 14 {A446R:G -> A488R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A488R:C -> A446R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A488R:C -> A489R:C: adjacent_5p upward } 0 17 {A489R:C -> A488R:C: adjacent_3p downward } 0 18 {A489R:C -> A490R:G: adjacent_5p } 0 19 {A490R:G -> A489R:C: adjacent_3p } 0 20 {A490R:G -> A491R:G: adjacent_5p upward } 0 21 {A491R:G -> A490R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A444R:C 0 1 A445R:G 0 2 A446R:G 0 3 A447R:G 0 4 A487R:A 0 5 A488R:C 0 6 A489R:C 0 7 A490R:G 0 [Edges] 0 {A444R:C -> A445R:G: adjacent_5p } 0 1 {A445R:G -> A444R:C: adjacent_3p } 0 2 {A444R:C -> A490R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A490R:G -> A444R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A445R:G -> A446R:G: adjacent_5p upward } 0 5 {A446R:G -> A445R:G: adjacent_3p downward } 0 6 {A445R:G -> A489R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A489R:C -> A445R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A445R:G -> A490R:G: outward } 0 9 {A490R:G -> A445R:G: outward } 0 10 {A446R:G -> A447R:G: adjacent_5p upward } 0 11 {A447R:G -> A446R:G: adjacent_3p downward } 0 12 {A446R:G -> A488R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A488R:C -> A446R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A447R:G -> A487R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {A487R:A -> A447R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {A487R:A -> A488R:C: adjacent_5p upward } 0 17 {A488R:C -> A487R:A: adjacent_3p downward } 0 18 {A488R:C -> A489R:C: adjacent_5p upward } 0 19 {A489R:C -> A488R:C: adjacent_3p downward } 0 20 {A489R:C -> A490R:G: adjacent_5p } 0 21 {A490R:G -> A489R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A445R:G 0 1 A446R:G 0 2 A447R:G 0 3 A448R:A 0 4 A486R:U 0 5 A487R:A 0 6 A488R:C 0 7 A489R:C 0 [Edges] 0 {A445R:G -> A446R:G: adjacent_5p upward } 0 1 {A446R:G -> A445R:G: adjacent_3p downward } 0 2 {A445R:G -> A489R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A489R:C -> A445R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A446R:G -> A447R:G: adjacent_5p upward } 0 5 {A447R:G -> A446R:G: adjacent_3p downward } 0 6 {A446R:G -> A488R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A488R:C -> A446R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A447R:G -> A448R:A: adjacent_5p } 0 9 {A448R:A -> A447R:G: adjacent_3p } 0 10 {A447R:G -> A487R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {A487R:A -> A447R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {A448R:A -> A486R:U: pairing antiparallel trans XXIV Hh/Ws } 0 13 {A486R:U -> A448R:A: pairing antiparallel trans XXIV Ws/Hh } 0 14 {A448R:A -> A487R:A: outward } 0 15 {A487R:A -> A448R:A: outward } 0 16 {A486R:U -> A487R:A: adjacent_5p } 0 17 {A487R:A -> A486R:U: adjacent_3p } 0 18 {A487R:A -> A488R:C: adjacent_5p upward } 0 19 {A488R:C -> A487R:A: adjacent_3p downward } 0 20 {A488R:C -> A489R:C: adjacent_5p upward } 0 21 {A489R:C -> A488R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A452R:A 0 1 A453R:A 0 2 A454R:C 0 3 A455R:C 0 4 A477R:G 0 5 A478R:A 0 6 A479R:C 0 7 A480R:U 0 [Edges] 0 {A452R:A -> A453R:A: adjacent_5p upward } 0 1 {A453R:A -> A452R:A: adjacent_3p downward } 0 2 {A452R:A -> A480R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {A480R:U -> A452R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {A453R:A -> A454R:C: adjacent_5p upward } 0 5 {A454R:C -> A453R:A: adjacent_3p downward } 0 6 {A453R:A -> A479R:C: pairing antiparallel trans XXV Hh/Ww } 0 7 {A479R:C -> A453R:A: pairing antiparallel trans XXV Ww/Hh } 0 8 {A454R:C -> A455R:C: adjacent_5p } 0 9 {A455R:C -> A454R:C: adjacent_3p } 0 10 {A454R:C -> A478R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 11 {A478R:A -> A454R:C: pairing antiparallel trans one_hbond Ww/Hw } 0 12 {A455R:C -> A477R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A477R:G -> A455R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A477R:G -> A478R:A: adjacent_5p upward } 0 15 {A478R:A -> A477R:G: adjacent_3p downward } 0 16 {A478R:A -> A479R:C: adjacent_5p upward } 0 17 {A479R:C -> A478R:A: adjacent_3p downward } 0 18 {A479R:C -> A480R:U: adjacent_5p upward } 0 19 {A480R:U -> A479R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A453R:A 0 1 A454R:C 0 2 A455R:C 0 3 A456R:C 0 4 A476R:G 0 5 A477R:G 0 6 A478R:A 0 7 A479R:C 0 [Edges] 0 {A453R:A -> A454R:C: adjacent_5p upward } 0 1 {A454R:C -> A453R:A: adjacent_3p downward } 0 2 {A453R:A -> A479R:C: pairing antiparallel trans XXV Hh/Ww } 0 3 {A479R:C -> A453R:A: pairing antiparallel trans XXV Ww/Hh } 0 4 {A454R:C -> A455R:C: adjacent_5p } 0 5 {A455R:C -> A454R:C: adjacent_3p } 0 6 {A454R:C -> A478R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 7 {A478R:A -> A454R:C: pairing antiparallel trans one_hbond Ww/Hw } 0 8 {A455R:C -> A456R:C: adjacent_5p upward } 0 9 {A456R:C -> A455R:C: adjacent_3p downward } 0 10 {A455R:C -> A477R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A477R:G -> A455R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A456R:C -> A476R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A476R:G -> A456R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A476R:G -> A477R:G: adjacent_5p upward } 0 15 {A477R:G -> A476R:G: adjacent_3p downward } 0 16 {A477R:G -> A478R:A: adjacent_5p upward } 0 17 {A478R:A -> A477R:G: adjacent_3p downward } 0 18 {A478R:A -> A479R:C: adjacent_5p upward } 0 19 {A479R:C -> A478R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A454R:C 0 1 A455R:C 0 2 A456R:C 0 3 A457R:C 0 4 A475R:G 0 5 A476R:G 0 6 A477R:G 0 7 A478R:A 0 [Edges] 0 {A454R:C -> A455R:C: adjacent_5p } 0 1 {A455R:C -> A454R:C: adjacent_3p } 0 2 {A454R:C -> A478R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 3 {A478R:A -> A454R:C: pairing antiparallel trans one_hbond Ww/Hw } 0 4 {A455R:C -> A456R:C: adjacent_5p upward } 0 5 {A456R:C -> A455R:C: adjacent_3p downward } 0 6 {A455R:C -> A477R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A477R:G -> A455R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A456R:C -> A457R:C: adjacent_5p upward } 0 9 {A457R:C -> A456R:C: adjacent_3p downward } 0 10 {A456R:C -> A476R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A476R:G -> A456R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A457R:C -> A475R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A475R:G -> A457R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A475R:G -> A476R:G: adjacent_5p upward } 0 15 {A476R:G -> A475R:G: adjacent_3p downward } 0 16 {A476R:G -> A477R:G: adjacent_5p upward } 0 17 {A477R:G -> A476R:G: adjacent_3p downward } 0 18 {A477R:G -> A478R:A: adjacent_5p upward } 0 19 {A478R:A -> A477R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A455R:C 0 1 A456R:C 0 2 A457R:C 0 3 A458R:C 0 4 A474R:G 0 5 A475R:G 0 6 A476R:G 0 7 A477R:G 0 [Edges] 0 {A455R:C -> A456R:C: adjacent_5p upward } 0 1 {A456R:C -> A455R:C: adjacent_3p downward } 0 2 {A455R:C -> A477R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A477R:G -> A455R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A456R:C -> A457R:C: adjacent_5p upward } 0 5 {A457R:C -> A456R:C: adjacent_3p downward } 0 6 {A456R:C -> A476R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A476R:G -> A456R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A457R:C -> A458R:C: adjacent_5p upward } 0 9 {A458R:C -> A457R:C: adjacent_3p downward } 0 10 {A457R:C -> A475R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A475R:G -> A457R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A458R:C -> A474R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A474R:G -> A458R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A474R:G -> A475R:G: adjacent_5p upward } 0 15 {A475R:G -> A474R:G: adjacent_3p downward } 0 16 {A475R:G -> A476R:G: adjacent_5p upward } 0 17 {A476R:G -> A475R:G: adjacent_3p downward } 0 18 {A476R:G -> A477R:G: adjacent_5p upward } 0 19 {A477R:G -> A476R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A456R:C 0 1 A457R:C 0 2 A458R:C 0 3 A459R:G 0 4 A463R:A 0 5 A474R:G 0 6 A475R:G 0 7 A476R:G 0 [Edges] 0 {A456R:C -> A457R:C: adjacent_5p upward } 0 1 {A457R:C -> A456R:C: adjacent_3p downward } 0 2 {A456R:C -> A476R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A476R:G -> A456R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A457R:C -> A458R:C: adjacent_5p upward } 0 5 {A458R:C -> A457R:C: adjacent_3p downward } 0 6 {A457R:C -> A475R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A475R:G -> A457R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A458R:C -> A459R:G: adjacent_5p upward } 0 9 {A459R:G -> A458R:C: adjacent_3p downward } 0 10 {A458R:C -> A474R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A474R:G -> A458R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A459R:G -> A463R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A463R:A -> A459R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A463R:A -> A474R:G: adjacent_5p upward } 0 15 {A474R:G -> A463R:A: adjacent_3p downward } 0 16 {A474R:G -> A475R:G: adjacent_5p upward } 0 17 {A475R:G -> A474R:G: adjacent_3p downward } 0 18 {A475R:G -> A476R:G: adjacent_5p upward } 0 19 {A476R:G -> A475R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A498R:U 0 1 A499R:A 0 2 A500R:G 0 3 A501R:C 0 4 A544R:G 0 5 A545R:C 0 6 A546R:G 0 7 A547R:A 0 [Edges] 0 {A498R:U -> A499R:A: adjacent_5p } 0 1 {A499R:A -> A498R:U: adjacent_3p } 0 2 {A498R:U -> A547R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {A547R:A -> A498R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {A499R:A -> A500R:G: adjacent_5p } 0 5 {A500R:G -> A499R:A: adjacent_3p } 0 6 {A499R:A -> A547R:A: outward } 0 7 {A547R:A -> A499R:A: outward } 0 8 {A500R:G -> A501R:C: adjacent_5p upward } 0 9 {A501R:C -> A500R:G: adjacent_3p downward } 0 10 {A500R:G -> A545R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A545R:C -> A500R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A500R:G -> A546R:G: outward } 0 13 {A546R:G -> A500R:G: outward } 0 14 {A501R:C -> A544R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A544R:G -> A501R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A544R:G -> A545R:C: adjacent_5p upward } 0 17 {A545R:C -> A544R:G: adjacent_3p downward } 0 18 {A545R:C -> A546R:G: adjacent_5p upward } 0 19 {A546R:G -> A545R:C: adjacent_3p downward } 0 20 {A546R:G -> A547R:A: adjacent_5p } 0 21 {A547R:A -> A546R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . 6 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . . 13 . . 19 . 20 7 3 7 . . . . 21 . [GraphModel] [Vertices] 0 A500R:G 0 1 A501R:C 0 2 A502R:G 0 3 A503R:C 0 4 A542R:G 0 5 A543R:C 0 6 A544R:G 0 7 A545R:C 0 [Edges] 0 {A500R:G -> A501R:C: adjacent_5p upward } 0 1 {A501R:C -> A500R:G: adjacent_3p downward } 0 2 {A500R:G -> A545R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A545R:C -> A500R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A501R:C -> A502R:G: adjacent_5p upward } 0 5 {A502R:G -> A501R:C: adjacent_3p downward } 0 6 {A501R:C -> A544R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A544R:G -> A501R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A502R:G -> A503R:C: adjacent_5p upward } 0 9 {A503R:C -> A502R:G: adjacent_3p downward } 0 10 {A502R:G -> A543R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A543R:C -> A502R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A502R:G -> A544R:G: outward } 0 13 {A544R:G -> A502R:G: outward } 0 14 {A503R:C -> A542R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A542R:G -> A503R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A542R:G -> A543R:C: adjacent_5p upward } 0 17 {A543R:C -> A542R:G: adjacent_3p downward } 0 18 {A543R:C -> A544R:G: adjacent_5p } 0 19 {A544R:G -> A543R:C: adjacent_3p } 0 20 {A544R:G -> A545R:C: adjacent_5p upward } 0 21 {A545R:C -> A544R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A501R:C 0 1 A502R:G 0 2 A503R:C 0 3 A504R:C 0 4 A541R:G 0 5 A542R:G 0 6 A543R:C 0 7 A544R:G 0 [Edges] 0 {A501R:C -> A502R:G: adjacent_5p upward } 0 1 {A502R:G -> A501R:C: adjacent_3p downward } 0 2 {A501R:C -> A544R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A544R:G -> A501R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A502R:G -> A503R:C: adjacent_5p upward } 0 5 {A503R:C -> A502R:G: adjacent_3p downward } 0 6 {A502R:G -> A543R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A543R:C -> A502R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A502R:G -> A544R:G: outward } 0 9 {A544R:G -> A502R:G: outward } 0 10 {A503R:C -> A504R:C: adjacent_5p } 0 11 {A504R:C -> A503R:C: adjacent_3p } 0 12 {A503R:C -> A542R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A542R:G -> A503R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A504R:C -> A541R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A541R:G -> A504R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A541R:G -> A542R:G: adjacent_5p upward } 0 17 {A542R:G -> A541R:G: adjacent_3p downward } 0 18 {A542R:G -> A543R:C: adjacent_5p upward } 0 19 {A543R:C -> A542R:G: adjacent_3p downward } 0 20 {A543R:C -> A544R:G: adjacent_5p } 0 21 {A544R:G -> A543R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A511R:C 0 1 A512R:U 0 2 A513R:C 0 3 A514R:C 0 4 A537R:G 0 5 A538R:G 0 6 A539R:A 0 7 A540R:G 0 [Edges] 0 {A511R:C -> A512R:U: adjacent_5p upward } 0 1 {A512R:U -> A511R:C: adjacent_3p downward } 0 2 {A511R:C -> A540R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A540R:G -> A511R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A512R:U -> A513R:C: adjacent_5p upward } 0 5 {A513R:C -> A512R:U: adjacent_3p downward } 0 6 {A512R:U -> A539R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A539R:A -> A512R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A513R:C -> A514R:C: adjacent_5p upward } 0 9 {A514R:C -> A513R:C: adjacent_3p downward } 0 10 {A513R:C -> A538R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A538R:G -> A513R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A514R:C -> A537R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A537R:G -> A514R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A537R:G -> A538R:G: adjacent_5p upward } 0 15 {A538R:G -> A537R:G: adjacent_3p downward } 0 16 {A538R:G -> A539R:A: adjacent_5p upward } 0 17 {A539R:A -> A538R:G: adjacent_3p downward } 0 18 {A539R:A -> A540R:G: adjacent_5p upward } 0 19 {A540R:G -> A539R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A512R:U 0 1 A513R:C 0 2 A514R:C 0 3 A515R:G 0 4 A536R:C 0 5 A537R:G 0 6 A538R:G 0 7 A539R:A 0 [Edges] 0 {A512R:U -> A513R:C: adjacent_5p upward } 0 1 {A513R:C -> A512R:U: adjacent_3p downward } 0 2 {A512R:U -> A539R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A539R:A -> A512R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A513R:C -> A514R:C: adjacent_5p upward } 0 5 {A514R:C -> A513R:C: adjacent_3p downward } 0 6 {A513R:C -> A538R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A538R:G -> A513R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A514R:C -> A515R:G: adjacent_5p upward } 0 9 {A515R:G -> A514R:C: adjacent_3p downward } 0 10 {A514R:C -> A537R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A537R:G -> A514R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A515R:G -> A536R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A536R:C -> A515R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A515R:G -> A537R:G: outward } 0 15 {A537R:G -> A515R:G: outward } 0 16 {A536R:C -> A537R:G: adjacent_5p } 0 17 {A537R:G -> A536R:C: adjacent_3p } 0 18 {A537R:G -> A538R:G: adjacent_5p upward } 0 19 {A538R:G -> A537R:G: adjacent_3p downward } 0 20 {A538R:G -> A539R:A: adjacent_5p upward } 0 21 {A539R:A -> A538R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A577R:G 0 1 A578R:C 0 2 A579R:G 0 3 A580R:U 0 4 A761R:G 0 5 A762R:C 0 6 A763R:G 0 7 A764R:C 0 [Edges] 0 {A577R:G -> A578R:C: adjacent_5p upward } 0 1 {A578R:C -> A577R:G: adjacent_3p downward } 0 2 {A577R:G -> A764R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A764R:C -> A577R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A578R:C -> A579R:G: adjacent_5p upward } 0 5 {A579R:G -> A578R:C: adjacent_3p downward } 0 6 {A578R:C -> A763R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A763R:G -> A578R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A579R:G -> A580R:U: adjacent_5p upward } 0 9 {A580R:U -> A579R:G: adjacent_3p downward } 0 10 {A579R:G -> A762R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A762R:C -> A579R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A579R:G -> A763R:G: outward } 0 13 {A763R:G -> A579R:G: outward } 0 14 {A580R:U -> A761R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A761R:G -> A580R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A761R:G -> A762R:C: adjacent_5p upward } 0 17 {A762R:C -> A761R:G: adjacent_3p downward } 0 18 {A762R:C -> A763R:G: adjacent_5p } 0 19 {A763R:G -> A762R:C: adjacent_3p } 0 20 {A763R:G -> A764R:C: adjacent_5p upward } 0 21 {A764R:C -> A763R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A578R:C 0 1 A579R:G 0 2 A580R:U 0 3 A581R:G 0 4 A760R:G 0 5 A761R:G 0 6 A762R:C 0 7 A763R:G 0 [Edges] 0 {A578R:C -> A579R:G: adjacent_5p upward } 0 1 {A579R:G -> A578R:C: adjacent_3p downward } 0 2 {A578R:C -> A763R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A763R:G -> A578R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A579R:G -> A580R:U: adjacent_5p upward } 0 5 {A580R:U -> A579R:G: adjacent_3p downward } 0 6 {A579R:G -> A762R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A762R:C -> A579R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A579R:G -> A763R:G: outward } 0 9 {A763R:G -> A579R:G: outward } 0 10 {A580R:U -> A581R:G: adjacent_5p upward } 0 11 {A581R:G -> A580R:U: adjacent_3p downward } 0 12 {A580R:U -> A761R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A761R:G -> A580R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A581R:G -> A760R:G: pairing antiparallel trans one_hbond 108 Sw/Hh } 0 15 {A760R:G -> A581R:G: pairing antiparallel trans one_hbond 108 Hh/Sw } 0 16 {A760R:G -> A761R:G: adjacent_5p upward } 0 17 {A761R:G -> A760R:G: adjacent_3p downward } 0 18 {A761R:G -> A762R:C: adjacent_5p upward } 0 19 {A762R:C -> A761R:G: adjacent_3p downward } 0 20 {A762R:C -> A763R:G: adjacent_5p } 0 21 {A763R:G -> A762R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A579R:G 0 1 A580R:U 0 2 A581R:G 0 3 A582R:U 0 4 A759R:A 0 5 A760R:G 0 6 A761R:G 0 7 A762R:C 0 [Edges] 0 {A579R:G -> A580R:U: adjacent_5p upward } 0 1 {A580R:U -> A579R:G: adjacent_3p downward } 0 2 {A579R:G -> A762R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A762R:C -> A579R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A580R:U -> A581R:G: adjacent_5p upward } 0 5 {A581R:G -> A580R:U: adjacent_3p downward } 0 6 {A580R:U -> A761R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A761R:G -> A580R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A581R:G -> A582R:U: adjacent_5p } 0 9 {A582R:U -> A581R:G: adjacent_3p } 0 10 {A581R:G -> A760R:G: pairing antiparallel trans one_hbond 108 Sw/Hh } 0 11 {A760R:G -> A581R:G: pairing antiparallel trans one_hbond 108 Hh/Sw } 0 12 {A582R:U -> A759R:A: pairing antiparallel trans XXIV Ws/Hh } 0 13 {A759R:A -> A582R:U: pairing antiparallel trans XXIV Hh/Ws } 0 14 {A759R:A -> A760R:G: adjacent_5p upward } 0 15 {A760R:G -> A759R:A: adjacent_3p downward } 0 16 {A760R:G -> A761R:G: adjacent_5p upward } 0 17 {A761R:G -> A760R:G: adjacent_3p downward } 0 18 {A761R:G -> A762R:C: adjacent_5p upward } 0 19 {A762R:C -> A761R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A580R:U 0 1 A581R:G 0 2 A582R:U 0 3 A583R:A 0 4 A758R:G 0 5 A759R:A 0 6 A760R:G 0 7 A761R:G 0 [Edges] 0 {A580R:U -> A581R:G: adjacent_5p upward } 0 1 {A581R:G -> A580R:U: adjacent_3p downward } 0 2 {A580R:U -> A761R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A761R:G -> A580R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A581R:G -> A582R:U: adjacent_5p } 0 5 {A582R:U -> A581R:G: adjacent_3p } 0 6 {A581R:G -> A760R:G: pairing antiparallel trans one_hbond 108 Sw/Hh } 0 7 {A760R:G -> A581R:G: pairing antiparallel trans one_hbond 108 Hh/Sw } 0 8 {A582R:U -> A583R:A: adjacent_5p upward } 0 9 {A583R:A -> A582R:U: adjacent_3p downward } 0 10 {A582R:U -> A759R:A: pairing antiparallel trans XXIV Ws/Hh } 0 11 {A759R:A -> A582R:U: pairing antiparallel trans XXIV Hh/Ws } 0 12 {A583R:A -> A758R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {A758R:G -> A583R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {A583R:A -> A759R:A: outward } 0 15 {A759R:A -> A583R:A: outward } 0 16 {A758R:G -> A759R:A: adjacent_5p } 0 17 {A759R:A -> A758R:G: adjacent_3p } 0 18 {A759R:A -> A760R:G: adjacent_5p upward } 0 19 {A760R:G -> A759R:A: adjacent_3p downward } 0 20 {A760R:G -> A761R:G: adjacent_5p upward } 0 21 {A761R:G -> A760R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A581R:G 0 1 A582R:U 0 2 A583R:A 0 3 A584R:G 0 4 A757R:U 0 5 A758R:G 0 6 A759R:A 0 7 A760R:G 0 [Edges] 0 {A581R:G -> A582R:U: adjacent_5p } 0 1 {A582R:U -> A581R:G: adjacent_3p } 0 2 {A581R:G -> A760R:G: pairing antiparallel trans one_hbond 108 Sw/Hh } 0 3 {A760R:G -> A581R:G: pairing antiparallel trans one_hbond 108 Hh/Sw } 0 4 {A582R:U -> A583R:A: adjacent_5p upward } 0 5 {A583R:A -> A582R:U: adjacent_3p downward } 0 6 {A582R:U -> A759R:A: pairing antiparallel trans XXIV Ws/Hh } 0 7 {A759R:A -> A582R:U: pairing antiparallel trans XXIV Hh/Ws } 0 8 {A583R:A -> A584R:G: adjacent_5p upward } 0 9 {A584R:G -> A583R:A: adjacent_3p downward } 0 10 {A583R:A -> A758R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {A758R:G -> A583R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {A583R:A -> A759R:A: outward } 0 13 {A759R:A -> A583R:A: outward } 0 14 {A584R:G -> A757R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A757R:U -> A584R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A757R:U -> A758R:G: adjacent_5p upward } 0 17 {A758R:G -> A757R:U: adjacent_3p downward } 0 18 {A758R:G -> A759R:A: adjacent_5p } 0 19 {A759R:A -> A758R:G: adjacent_3p } 0 20 {A759R:A -> A760R:G: adjacent_5p upward } 0 21 {A760R:G -> A759R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A582R:U 0 1 A583R:A 0 2 A584R:G 0 3 A585R:G 0 4 A756R:C 0 5 A757R:U 0 6 A758R:G 0 7 A759R:A 0 [Edges] 0 {A582R:U -> A583R:A: adjacent_5p upward } 0 1 {A583R:A -> A582R:U: adjacent_3p downward } 0 2 {A582R:U -> A759R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {A759R:A -> A582R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {A583R:A -> A584R:G: adjacent_5p upward } 0 5 {A584R:G -> A583R:A: adjacent_3p downward } 0 6 {A583R:A -> A758R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {A758R:G -> A583R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {A583R:A -> A759R:A: outward } 0 9 {A759R:A -> A583R:A: outward } 0 10 {A584R:G -> A585R:G: adjacent_5p upward } 0 11 {A585R:G -> A584R:G: adjacent_3p downward } 0 12 {A584R:G -> A757R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A757R:U -> A584R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A585R:G -> A756R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A756R:C -> A585R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A756R:C -> A757R:U: adjacent_5p upward } 0 17 {A757R:U -> A756R:C: adjacent_3p downward } 0 18 {A757R:U -> A758R:G: adjacent_5p upward } 0 19 {A758R:G -> A757R:U: adjacent_3p downward } 0 20 {A758R:G -> A759R:A: adjacent_5p } 0 21 {A759R:A -> A758R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A583R:A 0 1 A584R:G 0 2 A585R:G 0 3 A586R:C 0 4 A755R:G 0 5 A756R:C 0 6 A757R:U 0 7 A758R:G 0 [Edges] 0 {A583R:A -> A584R:G: adjacent_5p upward } 0 1 {A584R:G -> A583R:A: adjacent_3p downward } 0 2 {A583R:A -> A758R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A758R:G -> A583R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A584R:G -> A585R:G: adjacent_5p upward } 0 5 {A585R:G -> A584R:G: adjacent_3p downward } 0 6 {A584R:G -> A757R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A757R:U -> A584R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A585R:G -> A586R:C: adjacent_5p upward } 0 9 {A586R:C -> A585R:G: adjacent_3p downward } 0 10 {A585R:G -> A756R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A756R:C -> A585R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A586R:C -> A755R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A755R:G -> A586R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A755R:G -> A756R:C: adjacent_5p upward } 0 15 {A756R:C -> A755R:G: adjacent_3p downward } 0 16 {A756R:C -> A757R:U: adjacent_5p upward } 0 17 {A757R:U -> A756R:C: adjacent_3p downward } 0 18 {A757R:U -> A758R:G: adjacent_5p upward } 0 19 {A758R:G -> A757R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A588R:G 0 1 A589R:C 0 2 A590R:C 0 3 A591R:U 0 4 A648R:A 0 5 A649R:G 0 6 A650R:G 0 7 A651R:C 0 [Edges] 0 {A588R:G -> A589R:C: adjacent_5p upward } 0 1 {A589R:C -> A588R:G: adjacent_3p downward } 0 2 {A588R:G -> A651R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A651R:C -> A588R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A589R:C -> A590R:C: adjacent_5p } 0 5 {A590R:C -> A589R:C: adjacent_3p } 0 6 {A589R:C -> A650R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A650R:G -> A589R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A590R:C -> A591R:U: adjacent_5p } 0 9 {A591R:U -> A590R:C: adjacent_3p } 0 10 {A590R:C -> A649R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A649R:G -> A590R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A591R:U -> A648R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A648R:A -> A591R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A648R:A -> A649R:G: adjacent_5p upward } 0 15 {A649R:G -> A648R:A: adjacent_3p downward } 0 16 {A649R:G -> A650R:G: adjacent_5p upward } 0 17 {A650R:G -> A649R:G: adjacent_3p downward } 0 18 {A650R:G -> A651R:C: adjacent_5p upward } 0 19 {A651R:C -> A650R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A589R:C 0 1 A590R:C 0 2 A591R:U 0 3 A592R:G 0 4 A647R:C 0 5 A648R:A 0 6 A649R:G 0 7 A650R:G 0 [Edges] 0 {A589R:C -> A590R:C: adjacent_5p } 0 1 {A590R:C -> A589R:C: adjacent_3p } 0 2 {A589R:C -> A650R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A650R:G -> A589R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A590R:C -> A591R:U: adjacent_5p } 0 5 {A591R:U -> A590R:C: adjacent_3p } 0 6 {A590R:C -> A649R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A649R:G -> A590R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A591R:U -> A592R:G: adjacent_5p upward } 0 9 {A592R:G -> A591R:U: adjacent_3p downward } 0 10 {A591R:U -> A648R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A648R:A -> A591R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A592R:G -> A647R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A647R:C -> A592R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A592R:G -> A648R:A: outward } 0 15 {A648R:A -> A592R:G: outward } 0 16 {A647R:C -> A648R:A: adjacent_5p upward } 0 17 {A648R:A -> A647R:C: adjacent_3p downward } 0 18 {A648R:A -> A649R:G: adjacent_5p upward } 0 19 {A649R:G -> A648R:A: adjacent_3p downward } 0 20 {A649R:G -> A650R:G: adjacent_5p upward } 0 21 {A650R:G -> A649R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A590R:C 0 1 A591R:U 0 2 A592R:G 0 3 A593R:G 0 4 A646R:U 0 5 A647R:C 0 6 A648R:A 0 7 A649R:G 0 [Edges] 0 {A590R:C -> A591R:U: adjacent_5p } 0 1 {A591R:U -> A590R:C: adjacent_3p } 0 2 {A590R:C -> A649R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A649R:G -> A590R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A591R:U -> A592R:G: adjacent_5p upward } 0 5 {A592R:G -> A591R:U: adjacent_3p downward } 0 6 {A591R:U -> A648R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A648R:A -> A591R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A592R:G -> A593R:G: adjacent_5p upward } 0 9 {A593R:G -> A592R:G: adjacent_3p downward } 0 10 {A592R:G -> A647R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A647R:C -> A592R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A592R:G -> A648R:A: outward } 0 13 {A648R:A -> A592R:G: outward } 0 14 {A593R:G -> A646R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A646R:U -> A593R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A646R:U -> A647R:C: adjacent_5p } 0 17 {A647R:C -> A646R:U: adjacent_3p } 0 18 {A647R:C -> A648R:A: adjacent_5p upward } 0 19 {A648R:A -> A647R:C: adjacent_3p downward } 0 20 {A648R:A -> A649R:G: adjacent_5p upward } 0 21 {A649R:G -> A648R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A591R:U 0 1 A592R:G 0 2 A593R:G 0 3 A594R:G 0 4 A645R:C 0 5 A646R:U 0 6 A647R:C 0 7 A648R:A 0 [Edges] 0 {A591R:U -> A592R:G: adjacent_5p upward } 0 1 {A592R:G -> A591R:U: adjacent_3p downward } 0 2 {A591R:U -> A648R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A648R:A -> A591R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A592R:G -> A593R:G: adjacent_5p upward } 0 5 {A593R:G -> A592R:G: adjacent_3p downward } 0 6 {A592R:G -> A647R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A647R:C -> A592R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A592R:G -> A648R:A: outward } 0 9 {A648R:A -> A592R:G: outward } 0 10 {A593R:G -> A594R:G: adjacent_5p upward } 0 11 {A594R:G -> A593R:G: adjacent_3p downward } 0 12 {A593R:G -> A646R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A646R:U -> A593R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A594R:G -> A645R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A645R:C -> A594R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A645R:C -> A646R:U: adjacent_5p upward } 0 17 {A646R:U -> A645R:C: adjacent_3p downward } 0 18 {A646R:U -> A647R:C: adjacent_5p } 0 19 {A647R:C -> A646R:U: adjacent_3p } 0 20 {A647R:C -> A648R:A: adjacent_5p upward } 0 21 {A648R:A -> A647R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A598R:U 0 1 A599R:C 0 2 A600R:C 0 3 A601R:C 0 4 A637R:G 0 5 A638R:G 0 6 A639R:G 0 7 A640R:A 0 [Edges] 0 {A598R:U -> A599R:C: adjacent_5p upward } 0 1 {A599R:C -> A598R:U: adjacent_3p downward } 0 2 {A598R:U -> A640R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A640R:A -> A598R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A599R:C -> A600R:C: adjacent_5p upward } 0 5 {A600R:C -> A599R:C: adjacent_3p downward } 0 6 {A599R:C -> A639R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A639R:G -> A599R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A600R:C -> A601R:C: adjacent_5p } 0 9 {A601R:C -> A600R:C: adjacent_3p } 0 10 {A600R:C -> A638R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A638R:G -> A600R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A601R:C -> A637R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A637R:G -> A601R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A637R:G -> A638R:G: adjacent_5p upward } 0 15 {A638R:G -> A637R:G: adjacent_3p downward } 0 16 {A638R:G -> A639R:G: adjacent_5p upward } 0 17 {A639R:G -> A638R:G: adjacent_3p downward } 0 18 {A639R:G -> A640R:A: adjacent_5p upward } 0 19 {A640R:A -> A639R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A599R:C 0 1 A600R:C 0 2 A601R:C 0 3 A602R:A 0 4 A636R:U 0 5 A637R:G 0 6 A638R:G 0 7 A639R:G 0 [Edges] 0 {A599R:C -> A600R:C: adjacent_5p upward } 0 1 {A600R:C -> A599R:C: adjacent_3p downward } 0 2 {A599R:C -> A639R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A639R:G -> A599R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A600R:C -> A601R:C: adjacent_5p } 0 5 {A601R:C -> A600R:C: adjacent_3p } 0 6 {A600R:C -> A638R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A638R:G -> A600R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A601R:C -> A602R:A: adjacent_5p upward } 0 9 {A602R:A -> A601R:C: adjacent_3p downward } 0 10 {A601R:C -> A637R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A637R:G -> A601R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A602R:A -> A636R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A636R:U -> A602R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A602R:A -> A637R:G: outward } 0 15 {A637R:G -> A602R:A: outward } 0 16 {A636R:U -> A637R:G: adjacent_5p } 0 17 {A637R:G -> A636R:U: adjacent_3p } 0 18 {A637R:G -> A638R:G: adjacent_5p upward } 0 19 {A638R:G -> A637R:G: adjacent_3p downward } 0 20 {A638R:G -> A639R:G: adjacent_5p upward } 0 21 {A639R:G -> A638R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A600R:C 0 1 A601R:C 0 2 A602R:A 0 3 A603R:U 0 4 A635R:G 0 5 A636R:U 0 6 A637R:G 0 7 A638R:G 0 [Edges] 0 {A600R:C -> A601R:C: adjacent_5p } 0 1 {A601R:C -> A600R:C: adjacent_3p } 0 2 {A600R:C -> A638R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A638R:G -> A600R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A601R:C -> A602R:A: adjacent_5p upward } 0 5 {A602R:A -> A601R:C: adjacent_3p downward } 0 6 {A601R:C -> A637R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A637R:G -> A601R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A602R:A -> A603R:U: adjacent_5p upward } 0 9 {A603R:U -> A602R:A: adjacent_3p downward } 0 10 {A602R:A -> A636R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A636R:U -> A602R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A602R:A -> A637R:G: outward } 0 13 {A637R:G -> A602R:A: outward } 0 14 {A603R:U -> A635R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A635R:G -> A603R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A635R:G -> A636R:U: adjacent_5p upward } 0 17 {A636R:U -> A635R:G: adjacent_3p downward } 0 18 {A636R:U -> A637R:G: adjacent_5p } 0 19 {A637R:G -> A636R:U: adjacent_3p } 0 20 {A637R:G -> A638R:G: adjacent_5p upward } 0 21 {A638R:G -> A637R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A601R:C 0 1 A602R:A 0 2 A603R:U 0 3 A604R:G 0 4 A634R:C 0 5 A635R:G 0 6 A636R:U 0 7 A637R:G 0 [Edges] 0 {A601R:C -> A602R:A: adjacent_5p upward } 0 1 {A602R:A -> A601R:C: adjacent_3p downward } 0 2 {A601R:C -> A637R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A637R:G -> A601R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A602R:A -> A603R:U: adjacent_5p upward } 0 5 {A603R:U -> A602R:A: adjacent_3p downward } 0 6 {A602R:A -> A636R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A636R:U -> A602R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A602R:A -> A637R:G: outward } 0 9 {A637R:G -> A602R:A: outward } 0 10 {A603R:U -> A604R:G: adjacent_5p } 0 11 {A604R:G -> A603R:U: adjacent_3p } 0 12 {A603R:U -> A635R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A635R:G -> A603R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A604R:G -> A634R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A634R:C -> A604R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A604R:G -> A635R:G: outward } 0 17 {A635R:G -> A604R:G: outward } 0 18 {A634R:C -> A635R:G: adjacent_5p } 0 19 {A635R:G -> A634R:C: adjacent_3p } 0 20 {A635R:G -> A636R:U: adjacent_5p upward } 0 21 {A636R:U -> A635R:G: adjacent_3p downward } 0 22 {A636R:U -> A637R:G: adjacent_5p } 0 23 {A637R:G -> A636R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A602R:A 0 1 A603R:U 0 2 A604R:G 0 3 A605R:U 0 4 A633R:G 0 5 A634R:C 0 6 A635R:G 0 7 A636R:U 0 [Edges] 0 {A602R:A -> A603R:U: adjacent_5p upward } 0 1 {A603R:U -> A602R:A: adjacent_3p downward } 0 2 {A602R:A -> A636R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A636R:U -> A602R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A603R:U -> A604R:G: adjacent_5p } 0 5 {A604R:G -> A603R:U: adjacent_3p } 0 6 {A603R:U -> A635R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A635R:G -> A603R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A604R:G -> A605R:U: adjacent_5p upward } 0 9 {A605R:U -> A604R:G: adjacent_3p downward } 0 10 {A604R:G -> A634R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A634R:C -> A604R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A604R:G -> A635R:G: outward } 0 13 {A635R:G -> A604R:G: outward } 0 14 {A605R:U -> A633R:G: pairing antiparallel cis one_hbond Ws/Ww } 0 15 {A633R:G -> A605R:U: pairing antiparallel cis one_hbond Ww/Ws } 0 16 {A633R:G -> A634R:C: adjacent_5p upward } 0 17 {A634R:C -> A633R:G: adjacent_3p downward } 0 18 {A634R:C -> A635R:G: adjacent_5p } 0 19 {A635R:G -> A634R:C: adjacent_3p } 0 20 {A635R:G -> A636R:U: adjacent_5p upward } 0 21 {A636R:U -> A635R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A611R:A 0 1 A612R:C 0 2 A613R:C 0 3 A614R:A 0 4 A626R:U 0 5 A627R:G 0 6 A628R:G 0 7 A629R:G 0 [Edges] 0 {A611R:A -> A612R:C: adjacent_5p upward } 0 1 {A612R:C -> A611R:A: adjacent_3p downward } 0 2 {A611R:A -> A629R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {A629R:G -> A611R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A612R:C -> A613R:C: adjacent_5p upward } 0 5 {A613R:C -> A612R:C: adjacent_3p downward } 0 6 {A612R:C -> A628R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A628R:G -> A612R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A613R:C -> A614R:A: adjacent_5p upward } 0 9 {A614R:A -> A613R:C: adjacent_3p downward } 0 10 {A613R:C -> A627R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A627R:G -> A613R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A614R:A -> A626R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A626R:U -> A614R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A614R:A -> A627R:G: outward } 0 15 {A627R:G -> A614R:A: outward } 0 16 {A626R:U -> A627R:G: adjacent_5p upward } 0 17 {A627R:G -> A626R:U: adjacent_3p downward } 0 18 {A627R:G -> A628R:G: adjacent_5p upward } 0 19 {A628R:G -> A627R:G: adjacent_3p downward } 0 20 {A628R:G -> A629R:G: adjacent_5p upward } 0 21 {A629R:G -> A628R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A612R:C 0 1 A613R:C 0 2 A614R:A 0 3 A615R:C 0 4 A625R:G 0 5 A626R:U 0 6 A627R:G 0 7 A628R:G 0 [Edges] 0 {A612R:C -> A613R:C: adjacent_5p upward } 0 1 {A613R:C -> A612R:C: adjacent_3p downward } 0 2 {A612R:C -> A628R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A628R:G -> A612R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A613R:C -> A614R:A: adjacent_5p upward } 0 5 {A614R:A -> A613R:C: adjacent_3p downward } 0 6 {A613R:C -> A627R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A627R:G -> A613R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A614R:A -> A615R:C: adjacent_5p upward } 0 9 {A615R:C -> A614R:A: adjacent_3p downward } 0 10 {A614R:A -> A626R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A626R:U -> A614R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A614R:A -> A627R:G: outward } 0 13 {A627R:G -> A614R:A: outward } 0 14 {A615R:C -> A625R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A625R:G -> A615R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A625R:G -> A626R:U: adjacent_5p upward } 0 17 {A626R:U -> A625R:G: adjacent_3p downward } 0 18 {A626R:U -> A627R:G: adjacent_5p upward } 0 19 {A627R:G -> A626R:U: adjacent_3p downward } 0 20 {A627R:G -> A628R:G: adjacent_5p upward } 0 21 {A628R:G -> A627R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A613R:C 0 1 A614R:A 0 2 A615R:C 0 3 A616R:G 0 4 A624R:C 0 5 A625R:G 0 6 A626R:U 0 7 A627R:G 0 [Edges] 0 {A613R:C -> A614R:A: adjacent_5p upward } 0 1 {A614R:A -> A613R:C: adjacent_3p downward } 0 2 {A613R:C -> A627R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A627R:G -> A613R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A614R:A -> A615R:C: adjacent_5p upward } 0 5 {A615R:C -> A614R:A: adjacent_3p downward } 0 6 {A614R:A -> A626R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A626R:U -> A614R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A614R:A -> A627R:G: outward } 0 9 {A627R:G -> A614R:A: outward } 0 10 {A615R:C -> A616R:G: adjacent_5p } 0 11 {A616R:G -> A615R:C: adjacent_3p } 0 12 {A615R:C -> A625R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A625R:G -> A615R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A616R:G -> A624R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A624R:C -> A616R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A616R:G -> A625R:G: outward } 0 17 {A625R:G -> A616R:G: outward } 0 18 {A624R:C -> A625R:G: adjacent_5p } 0 19 {A625R:G -> A624R:C: adjacent_3p } 0 20 {A625R:G -> A626R:U: adjacent_5p upward } 0 21 {A626R:U -> A625R:G: adjacent_3p downward } 0 22 {A626R:U -> A627R:G: adjacent_5p upward } 0 23 {A627R:G -> A626R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A614R:A 0 1 A615R:C 0 2 A616R:G 0 3 A617R:G 0 4 A623R:C 0 5 A624R:C 0 6 A625R:G 0 7 A626R:U 0 [Edges] 0 {A614R:A -> A615R:C: adjacent_5p upward } 0 1 {A615R:C -> A614R:A: adjacent_3p downward } 0 2 {A614R:A -> A626R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A626R:U -> A614R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A615R:C -> A616R:G: adjacent_5p } 0 5 {A616R:G -> A615R:C: adjacent_3p } 0 6 {A615R:C -> A625R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A625R:G -> A615R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A616R:G -> A617R:G: adjacent_5p upward } 0 9 {A617R:G -> A616R:G: adjacent_3p downward } 0 10 {A616R:G -> A624R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A624R:C -> A616R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A616R:G -> A625R:G: outward } 0 13 {A625R:G -> A616R:G: outward } 0 14 {A617R:G -> A623R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A623R:C -> A617R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A623R:C -> A624R:C: adjacent_5p upward } 0 17 {A624R:C -> A623R:C: adjacent_3p downward } 0 18 {A624R:C -> A625R:G: adjacent_5p } 0 19 {A625R:G -> A624R:C: adjacent_3p } 0 20 {A625R:G -> A626R:U: adjacent_5p upward } 0 21 {A626R:U -> A625R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A615R:C 0 1 A616R:G 0 2 A617R:G 0 3 A618R:C 0 4 A622R:A 0 5 A623R:C 0 6 A624R:C 0 7 A625R:G 0 [Edges] 0 {A615R:C -> A616R:G: adjacent_5p } 0 1 {A616R:G -> A615R:C: adjacent_3p } 0 2 {A615R:C -> A625R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A625R:G -> A615R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A616R:G -> A617R:G: adjacent_5p upward } 0 5 {A617R:G -> A616R:G: adjacent_3p downward } 0 6 {A616R:G -> A624R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A624R:C -> A616R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A616R:G -> A625R:G: outward } 0 9 {A625R:G -> A616R:G: outward } 0 10 {A617R:G -> A618R:C: adjacent_5p upward } 0 11 {A618R:C -> A617R:G: adjacent_3p downward } 0 12 {A617R:G -> A623R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A623R:C -> A617R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A618R:C -> A622R:A: pairing antiparallel trans XXV Ww/Hw } 0 15 {A622R:A -> A618R:C: pairing antiparallel trans XXV Hw/Ww } 0 16 {A622R:A -> A623R:C: adjacent_5p upward } 0 17 {A623R:C -> A622R:A: adjacent_3p downward } 0 18 {A623R:C -> A624R:C: adjacent_5p upward } 0 19 {A624R:C -> A623R:C: adjacent_3p downward } 0 20 {A624R:C -> A625R:G: adjacent_5p } 0 21 {A625R:G -> A624R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A654R:G 0 1 A655R:A 0 2 A656R:C 0 3 A657R:G 0 4 A749R:C 0 5 A750R:G 0 6 A751R:U 0 7 A752R:G 0 [Edges] 0 {A654R:G -> A655R:A: adjacent_5p upward } 0 1 {A655R:A -> A654R:G: adjacent_3p downward } 0 2 {A654R:G -> A752R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 3 {A752R:G -> A654R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 4 {A655R:A -> A656R:C: adjacent_5p upward } 0 5 {A656R:C -> A655R:A: adjacent_3p downward } 0 6 {A655R:A -> A751R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A751R:U -> A655R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A656R:C -> A657R:G: adjacent_5p } 0 9 {A657R:G -> A656R:C: adjacent_3p } 0 10 {A656R:C -> A750R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A750R:G -> A656R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A657R:G -> A749R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A749R:C -> A657R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A657R:G -> A750R:G: outward } 0 15 {A750R:G -> A657R:G: outward } 0 16 {A749R:C -> A750R:G: adjacent_5p } 0 17 {A750R:G -> A749R:C: adjacent_3p } 0 18 {A750R:G -> A751R:U: adjacent_5p upward } 0 19 {A751R:U -> A750R:G: adjacent_3p downward } 0 20 {A751R:U -> A752R:G: adjacent_5p upward } 0 21 {A752R:G -> A751R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A658R:G 0 1 A659R:U 0 2 A660R:G 0 3 A661R:G 0 4 A744R:C 0 5 A745R:C 0 6 A746R:A 0 7 A747R:C 0 [Edges] 0 {A658R:G -> A659R:U: adjacent_5p upward } 0 1 {A659R:U -> A658R:G: adjacent_3p downward } 0 2 {A658R:G -> A747R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A747R:C -> A658R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A659R:U -> A660R:G: adjacent_5p upward } 0 5 {A660R:G -> A659R:U: adjacent_3p downward } 0 6 {A659R:U -> A746R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A746R:A -> A659R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A660R:G -> A661R:G: adjacent_5p upward } 0 9 {A661R:G -> A660R:G: adjacent_3p downward } 0 10 {A660R:G -> A745R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A745R:C -> A660R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A660R:G -> A746R:A: outward } 0 13 {A746R:A -> A660R:G: outward } 0 14 {A661R:G -> A744R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A744R:C -> A661R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A744R:C -> A745R:C: adjacent_5p upward } 0 17 {A745R:C -> A744R:C: adjacent_3p downward } 0 18 {A745R:C -> A746R:A: adjacent_5p upward } 0 19 {A746R:A -> A745R:C: adjacent_3p downward } 0 20 {A746R:A -> A747R:C: adjacent_5p upward } 0 21 {A747R:C -> A746R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A659R:U 0 1 A660R:G 0 2 A661R:G 0 3 A662R:G 0 4 A743R:U 0 5 A744R:C 0 6 A745R:C 0 7 A746R:A 0 [Edges] 0 {A659R:U -> A660R:G: adjacent_5p upward } 0 1 {A660R:G -> A659R:U: adjacent_3p downward } 0 2 {A659R:U -> A746R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A746R:A -> A659R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A660R:G -> A661R:G: adjacent_5p upward } 0 5 {A661R:G -> A660R:G: adjacent_3p downward } 0 6 {A660R:G -> A745R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A745R:C -> A660R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A660R:G -> A746R:A: outward } 0 9 {A746R:A -> A660R:G: outward } 0 10 {A661R:G -> A662R:G: adjacent_5p upward } 0 11 {A662R:G -> A661R:G: adjacent_3p downward } 0 12 {A661R:G -> A744R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A744R:C -> A661R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A662R:G -> A743R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A743R:U -> A662R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A662R:G -> A744R:C: outward } 0 17 {A744R:C -> A662R:G: outward } 0 18 {A743R:U -> A744R:C: adjacent_5p } 0 19 {A744R:C -> A743R:U: adjacent_3p } 0 20 {A744R:C -> A745R:C: adjacent_5p upward } 0 21 {A745R:C -> A744R:C: adjacent_3p downward } 0 22 {A745R:C -> A746R:A: adjacent_5p upward } 0 23 {A746R:A -> A745R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A660R:G 0 1 A661R:G 0 2 A662R:G 0 3 A663R:A 0 4 A742R:G 0 5 A743R:U 0 6 A744R:C 0 7 A745R:C 0 [Edges] 0 {A660R:G -> A661R:G: adjacent_5p upward } 0 1 {A661R:G -> A660R:G: adjacent_3p downward } 0 2 {A660R:G -> A745R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A745R:C -> A660R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A661R:G -> A662R:G: adjacent_5p upward } 0 5 {A662R:G -> A661R:G: adjacent_3p downward } 0 6 {A661R:G -> A744R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A744R:C -> A661R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A662R:G -> A663R:A: adjacent_5p upward } 0 9 {A663R:A -> A662R:G: adjacent_3p downward } 0 10 {A662R:G -> A743R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A743R:U -> A662R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A662R:G -> A744R:C: outward } 0 13 {A744R:C -> A662R:G: outward } 0 14 {A663R:A -> A742R:G: pairing antiparallel cis VIII Ww/Ww } 0 15 {A742R:G -> A663R:A: pairing antiparallel cis VIII Ww/Ww } 0 16 {A742R:G -> A743R:U: adjacent_5p upward } 0 17 {A743R:U -> A742R:G: adjacent_3p downward } 0 18 {A743R:U -> A744R:C: adjacent_5p } 0 19 {A744R:C -> A743R:U: adjacent_3p } 0 20 {A744R:C -> A745R:C: adjacent_5p upward } 0 21 {A745R:C -> A744R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A661R:G 0 1 A662R:G 0 2 A663R:A 0 3 A664R:G 0 4 A741R:G 0 5 A742R:G 0 6 A743R:U 0 7 A744R:C 0 [Edges] 0 {A661R:G -> A662R:G: adjacent_5p upward } 0 1 {A662R:G -> A661R:G: adjacent_3p downward } 0 2 {A661R:G -> A744R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A744R:C -> A661R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A662R:G -> A663R:A: adjacent_5p upward } 0 5 {A663R:A -> A662R:G: adjacent_3p downward } 0 6 {A662R:G -> A743R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A743R:U -> A662R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A662R:G -> A744R:C: outward } 0 9 {A744R:C -> A662R:G: outward } 0 10 {A663R:A -> A664R:G: adjacent_5p upward } 0 11 {A664R:G -> A663R:A: adjacent_3p downward } 0 12 {A663R:A -> A742R:G: pairing antiparallel cis VIII Ww/Ww } 0 13 {A742R:G -> A663R:A: pairing antiparallel cis VIII Ww/Ww } 0 14 {A664R:G -> A741R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 15 {A741R:G -> A664R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 16 {A741R:G -> A742R:G: adjacent_5p upward } 0 17 {A742R:G -> A741R:G: adjacent_3p downward } 0 18 {A742R:G -> A743R:U: adjacent_5p upward } 0 19 {A743R:U -> A742R:G: adjacent_3p downward } 0 20 {A743R:U -> A744R:C: adjacent_5p } 0 21 {A744R:C -> A743R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A666R:G 0 1 A667R:G 0 2 A668R:G 0 3 A669R:U 0 4 A737R:A 0 5 A738R:C 0 6 A739R:C 0 7 A740R:U 0 [Edges] 0 {A666R:G -> A667R:G: adjacent_5p upward } 0 1 {A667R:G -> A666R:G: adjacent_3p downward } 0 2 {A666R:G -> A740R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A740R:U -> A666R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A667R:G -> A668R:G: adjacent_5p upward } 0 5 {A668R:G -> A667R:G: adjacent_3p downward } 0 6 {A667R:G -> A739R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A739R:C -> A667R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A668R:G -> A669R:U: adjacent_5p upward } 0 9 {A669R:U -> A668R:G: adjacent_3p downward } 0 10 {A668R:G -> A738R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A738R:C -> A668R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A669R:U -> A737R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A737R:A -> A669R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A737R:A -> A738R:C: adjacent_5p upward } 0 15 {A738R:C -> A737R:A: adjacent_3p downward } 0 16 {A738R:C -> A739R:C: adjacent_5p upward } 0 17 {A739R:C -> A738R:C: adjacent_3p downward } 0 18 {A739R:C -> A740R:U: adjacent_5p upward } 0 19 {A740R:U -> A739R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A667R:G 0 1 A668R:G 0 2 A669R:U 0 3 A670R:G 0 4 A736R:C 0 5 A737R:A 0 6 A738R:C 0 7 A739R:C 0 [Edges] 0 {A667R:G -> A668R:G: adjacent_5p upward } 0 1 {A668R:G -> A667R:G: adjacent_3p downward } 0 2 {A667R:G -> A739R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A739R:C -> A667R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A668R:G -> A669R:U: adjacent_5p upward } 0 5 {A669R:U -> A668R:G: adjacent_3p downward } 0 6 {A668R:G -> A738R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A738R:C -> A668R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A669R:U -> A670R:G: adjacent_5p upward } 0 9 {A670R:G -> A669R:U: adjacent_3p downward } 0 10 {A669R:U -> A737R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A737R:A -> A669R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A670R:G -> A736R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A736R:C -> A670R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A670R:G -> A737R:A: outward } 0 15 {A737R:A -> A670R:G: outward } 0 16 {A736R:C -> A737R:A: adjacent_5p upward } 0 17 {A737R:A -> A736R:C: adjacent_3p downward } 0 18 {A737R:A -> A738R:C: adjacent_5p upward } 0 19 {A738R:C -> A737R:A: adjacent_3p downward } 0 20 {A738R:C -> A739R:C: adjacent_5p upward } 0 21 {A739R:C -> A738R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A668R:G 0 1 A669R:U 0 2 A670R:G 0 3 A671R:G 0 4 A735R:C 0 5 A736R:C 0 6 A737R:A 0 7 A738R:C 0 [Edges] 0 {A668R:G -> A669R:U: adjacent_5p upward } 0 1 {A669R:U -> A668R:G: adjacent_3p downward } 0 2 {A668R:G -> A738R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A738R:C -> A668R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A669R:U -> A670R:G: adjacent_5p upward } 0 5 {A670R:G -> A669R:U: adjacent_3p downward } 0 6 {A669R:U -> A737R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A737R:A -> A669R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A670R:G -> A671R:G: adjacent_5p upward } 0 9 {A671R:G -> A670R:G: adjacent_3p downward } 0 10 {A670R:G -> A736R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A736R:C -> A670R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A670R:G -> A737R:A: outward } 0 13 {A737R:A -> A670R:G: outward } 0 14 {A671R:G -> A735R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A735R:C -> A671R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A735R:C -> A736R:C: adjacent_5p } 0 17 {A736R:C -> A735R:C: adjacent_3p } 0 18 {A736R:C -> A737R:A: adjacent_5p upward } 0 19 {A737R:A -> A736R:C: adjacent_3p downward } 0 20 {A737R:A -> A738R:C: adjacent_5p upward } 0 21 {A738R:C -> A737R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A669R:U 0 1 A670R:G 0 2 A671R:G 0 3 A672R:U 0 4 A734R:G 0 5 A735R:C 0 6 A736R:C 0 7 A737R:A 0 [Edges] 0 {A669R:U -> A670R:G: adjacent_5p upward } 0 1 {A670R:G -> A669R:U: adjacent_3p downward } 0 2 {A669R:U -> A737R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A737R:A -> A669R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A670R:G -> A671R:G: adjacent_5p upward } 0 5 {A671R:G -> A670R:G: adjacent_3p downward } 0 6 {A670R:G -> A736R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A736R:C -> A670R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A670R:G -> A737R:A: outward } 0 9 {A737R:A -> A670R:G: outward } 0 10 {A671R:G -> A672R:U: adjacent_5p upward } 0 11 {A672R:U -> A671R:G: adjacent_3p downward } 0 12 {A671R:G -> A735R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A735R:C -> A671R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A672R:U -> A734R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A734R:G -> A672R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A734R:G -> A735R:C: adjacent_5p upward } 0 17 {A735R:C -> A734R:G: adjacent_3p downward } 0 18 {A735R:C -> A736R:C: adjacent_5p } 0 19 {A736R:C -> A735R:C: adjacent_3p } 0 20 {A736R:C -> A737R:A: adjacent_5p upward } 0 21 {A737R:A -> A736R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A673R:G 0 1 A674R:G 0 2 A675R:A 0 3 A676R:A 0 4 A714R:G 0 5 A715R:A 0 6 A716R:A 0 7 A717R:C 0 [Edges] 0 {A673R:G -> A674R:G: adjacent_5p upward } 0 1 {A674R:G -> A673R:G: adjacent_3p downward } 0 2 {A673R:G -> A717R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A717R:C -> A673R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A674R:G -> A675R:A: adjacent_5p upward } 0 5 {A675R:A -> A674R:G: adjacent_3p downward } 0 6 {A674R:G -> A716R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {A716R:A -> A674R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A675R:A -> A676R:A: adjacent_5p upward } 0 9 {A676R:A -> A675R:A: adjacent_3p downward } 0 10 {A675R:A -> A715R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 11 {A715R:A -> A675R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 12 {A676R:A -> A714R:G: pairing antiparallel cis VIII Ww/Ww } 0 13 {A714R:G -> A676R:A: pairing antiparallel cis VIII Ww/Ww } 0 14 {A714R:G -> A715R:A: adjacent_5p upward } 0 15 {A715R:A -> A714R:G: adjacent_3p downward } 0 16 {A715R:A -> A716R:A: adjacent_5p upward } 0 17 {A716R:A -> A715R:A: adjacent_3p downward } 0 18 {A716R:A -> A717R:C: adjacent_5p upward } 0 19 {A717R:C -> A716R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A674R:G 0 1 A675R:A 0 2 A676R:A 0 3 A677R:U 0 4 A713R:G 0 5 A714R:G 0 6 A715R:A 0 7 A716R:A 0 [Edges] 0 {A674R:G -> A675R:A: adjacent_5p upward } 0 1 {A675R:A -> A674R:G: adjacent_3p downward } 0 2 {A674R:G -> A716R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A716R:A -> A674R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A675R:A -> A676R:A: adjacent_5p upward } 0 5 {A676R:A -> A675R:A: adjacent_3p downward } 0 6 {A675R:A -> A715R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 7 {A715R:A -> A675R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 8 {A676R:A -> A677R:U: adjacent_5p upward } 0 9 {A677R:U -> A676R:A: adjacent_3p downward } 0 10 {A676R:A -> A714R:G: pairing antiparallel cis VIII Ww/Ww } 0 11 {A714R:G -> A676R:A: pairing antiparallel cis VIII Ww/Ww } 0 12 {A677R:U -> A713R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 13 {A713R:G -> A677R:U: pairing antiparallel cis one_hbond Ww/Wh } 0 14 {A713R:G -> A714R:G: adjacent_5p upward } 0 15 {A714R:G -> A713R:G: adjacent_3p downward } 0 16 {A714R:G -> A715R:A: adjacent_5p upward } 0 17 {A715R:A -> A714R:G: adjacent_3p downward } 0 18 {A715R:A -> A716R:A: adjacent_5p upward } 0 19 {A716R:A -> A715R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A675R:A 0 1 A676R:A 0 2 A677R:U 0 3 A678R:U 0 4 A712R:A 0 5 A713R:G 0 6 A714R:G 0 7 A715R:A 0 [Edges] 0 {A675R:A -> A676R:A: adjacent_5p upward } 0 1 {A676R:A -> A675R:A: adjacent_3p downward } 0 2 {A675R:A -> A715R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 3 {A715R:A -> A675R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 4 {A676R:A -> A677R:U: adjacent_5p upward } 0 5 {A677R:U -> A676R:A: adjacent_3p downward } 0 6 {A676R:A -> A714R:G: pairing antiparallel cis VIII Ww/Ww } 0 7 {A714R:G -> A676R:A: pairing antiparallel cis VIII Ww/Ww } 0 8 {A677R:U -> A678R:U: adjacent_5p upward } 0 9 {A678R:U -> A677R:U: adjacent_3p downward } 0 10 {A677R:U -> A713R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 11 {A713R:G -> A677R:U: pairing antiparallel cis one_hbond Ww/Wh } 0 12 {A678R:U -> A712R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A712R:A -> A678R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A712R:A -> A713R:G: adjacent_5p upward } 0 15 {A713R:G -> A712R:A: adjacent_3p downward } 0 16 {A713R:G -> A714R:G: adjacent_5p upward } 0 17 {A714R:G -> A713R:G: adjacent_3p downward } 0 18 {A714R:G -> A715R:A: adjacent_5p upward } 0 19 {A715R:A -> A714R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A676R:A 0 1 A677R:U 0 2 A678R:U 0 3 A679R:C 0 4 A711R:G 0 5 A712R:A 0 6 A713R:G 0 7 A714R:G 0 [Edges] 0 {A676R:A -> A677R:U: adjacent_5p upward } 0 1 {A677R:U -> A676R:A: adjacent_3p downward } 0 2 {A676R:A -> A714R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {A714R:G -> A676R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A677R:U -> A678R:U: adjacent_5p upward } 0 5 {A678R:U -> A677R:U: adjacent_3p downward } 0 6 {A677R:U -> A713R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 7 {A713R:G -> A677R:U: pairing antiparallel cis one_hbond Ww/Wh } 0 8 {A678R:U -> A679R:C: adjacent_5p upward } 0 9 {A679R:C -> A678R:U: adjacent_3p downward } 0 10 {A678R:U -> A712R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A712R:A -> A678R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A679R:C -> A711R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A711R:G -> A679R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A711R:G -> A712R:A: adjacent_5p upward } 0 15 {A712R:A -> A711R:G: adjacent_3p downward } 0 16 {A712R:A -> A713R:G: adjacent_5p upward } 0 17 {A713R:G -> A712R:A: adjacent_3p downward } 0 18 {A713R:G -> A714R:G: adjacent_5p upward } 0 19 {A714R:G -> A713R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A677R:U 0 1 A678R:U 0 2 A679R:C 0 3 A680R:C 0 4 A710R:G 0 5 A711R:G 0 6 A712R:A 0 7 A713R:G 0 [Edges] 0 {A677R:U -> A678R:U: adjacent_5p upward } 0 1 {A678R:U -> A677R:U: adjacent_3p downward } 0 2 {A677R:U -> A713R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 3 {A713R:G -> A677R:U: pairing antiparallel cis one_hbond Ww/Wh } 0 4 {A678R:U -> A679R:C: adjacent_5p upward } 0 5 {A679R:C -> A678R:U: adjacent_3p downward } 0 6 {A678R:U -> A712R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A712R:A -> A678R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A679R:C -> A680R:C: adjacent_5p upward } 0 9 {A680R:C -> A679R:C: adjacent_3p downward } 0 10 {A679R:C -> A711R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A711R:G -> A679R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A680R:C -> A710R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A710R:G -> A680R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A710R:G -> A711R:G: adjacent_5p upward } 0 15 {A711R:G -> A710R:G: adjacent_3p downward } 0 16 {A711R:G -> A712R:A: adjacent_5p upward } 0 17 {A712R:A -> A711R:G: adjacent_3p downward } 0 18 {A712R:A -> A713R:G: adjacent_5p upward } 0 19 {A713R:G -> A712R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A678R:U 0 1 A679R:C 0 2 A680R:C 0 3 A681R:C 0 4 A709R:G 0 5 A710R:G 0 6 A711R:G 0 7 A712R:A 0 [Edges] 0 {A678R:U -> A679R:C: adjacent_5p upward } 0 1 {A679R:C -> A678R:U: adjacent_3p downward } 0 2 {A678R:U -> A712R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A712R:A -> A678R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A679R:C -> A680R:C: adjacent_5p upward } 0 5 {A680R:C -> A679R:C: adjacent_3p downward } 0 6 {A679R:C -> A711R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A711R:G -> A679R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A680R:C -> A681R:C: adjacent_5p upward } 0 9 {A681R:C -> A680R:C: adjacent_3p downward } 0 10 {A680R:C -> A710R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A710R:G -> A680R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A681R:C -> A709R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A709R:G -> A681R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A709R:G -> A710R:G: adjacent_5p upward } 0 15 {A710R:G -> A709R:G: adjacent_3p downward } 0 16 {A710R:G -> A711R:G: adjacent_5p upward } 0 17 {A711R:G -> A710R:G: adjacent_3p downward } 0 18 {A711R:G -> A712R:A: adjacent_5p upward } 0 19 {A712R:A -> A711R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A679R:C 0 1 A680R:C 0 2 A681R:C 0 3 A682R:G 0 4 A708R:C 0 5 A709R:G 0 6 A710R:G 0 7 A711R:G 0 [Edges] 0 {A679R:C -> A680R:C: adjacent_5p upward } 0 1 {A680R:C -> A679R:C: adjacent_3p downward } 0 2 {A679R:C -> A711R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A711R:G -> A679R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A680R:C -> A681R:C: adjacent_5p upward } 0 5 {A681R:C -> A680R:C: adjacent_3p downward } 0 6 {A680R:C -> A710R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A710R:G -> A680R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A681R:C -> A682R:G: adjacent_5p } 0 9 {A682R:G -> A681R:C: adjacent_3p } 0 10 {A681R:C -> A709R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A709R:G -> A681R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A682R:G -> A708R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A708R:C -> A682R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A682R:G -> A709R:G: outward } 0 15 {A709R:G -> A682R:G: outward } 0 16 {A708R:C -> A709R:G: adjacent_5p } 0 17 {A709R:G -> A708R:C: adjacent_3p } 0 18 {A709R:G -> A710R:G: adjacent_5p upward } 0 19 {A710R:G -> A709R:G: adjacent_3p downward } 0 20 {A710R:G -> A711R:G: adjacent_5p upward } 0 21 {A711R:G -> A710R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A680R:C 0 1 A681R:C 0 2 A682R:G 0 3 A683R:G 0 4 A707R:C 0 5 A708R:C 0 6 A709R:G 0 7 A710R:G 0 [Edges] 0 {A680R:C -> A681R:C: adjacent_5p upward } 0 1 {A681R:C -> A680R:C: adjacent_3p downward } 0 2 {A680R:C -> A710R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A710R:G -> A680R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A681R:C -> A682R:G: adjacent_5p } 0 5 {A682R:G -> A681R:C: adjacent_3p } 0 6 {A681R:C -> A709R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A709R:G -> A681R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A682R:G -> A683R:G: adjacent_5p upward } 0 9 {A683R:G -> A682R:G: adjacent_3p downward } 0 10 {A682R:G -> A708R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A708R:C -> A682R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A682R:G -> A709R:G: outward } 0 13 {A709R:G -> A682R:G: outward } 0 14 {A683R:G -> A707R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A707R:C -> A683R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A707R:C -> A708R:C: adjacent_5p } 0 17 {A708R:C -> A707R:C: adjacent_3p } 0 18 {A708R:C -> A709R:G: adjacent_5p } 0 19 {A709R:G -> A708R:C: adjacent_3p } 0 20 {A709R:G -> A710R:G: adjacent_5p upward } 0 21 {A710R:G -> A709R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A681R:C 0 1 A682R:G 0 2 A683R:G 0 3 A684R:A 0 4 A706R:A 0 5 A707R:C 0 6 A708R:C 0 7 A709R:G 0 [Edges] 0 {A681R:C -> A682R:G: adjacent_5p } 0 1 {A682R:G -> A681R:C: adjacent_3p } 0 2 {A681R:C -> A709R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A709R:G -> A681R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A682R:G -> A683R:G: adjacent_5p upward } 0 5 {A683R:G -> A682R:G: adjacent_3p downward } 0 6 {A682R:G -> A708R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A708R:C -> A682R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A682R:G -> A709R:G: outward } 0 9 {A709R:G -> A682R:G: outward } 0 10 {A683R:G -> A684R:A: adjacent_5p upward } 0 11 {A684R:A -> A683R:G: adjacent_3p downward } 0 12 {A683R:G -> A707R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A707R:C -> A683R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A684R:A -> A706R:A: pairing antiparallel cis 37 Ww/Ww } 0 15 {A706R:A -> A684R:A: pairing antiparallel cis 37 Ww/Ww } 0 16 {A706R:A -> A707R:C: adjacent_5p upward } 0 17 {A707R:C -> A706R:A: adjacent_3p downward } 0 18 {A707R:C -> A708R:C: adjacent_5p } 0 19 {A708R:C -> A707R:C: adjacent_3p } 0 20 {A708R:C -> A709R:G: adjacent_5p } 0 21 {A709R:G -> A708R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A682R:G 0 1 A683R:G 0 2 A684R:A 0 3 A685R:G 0 4 A705R:U 0 5 A706R:A 0 6 A707R:C 0 7 A708R:C 0 [Edges] 0 {A682R:G -> A683R:G: adjacent_5p upward } 0 1 {A683R:G -> A682R:G: adjacent_3p downward } 0 2 {A682R:G -> A708R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A708R:C -> A682R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A683R:G -> A684R:A: adjacent_5p upward } 0 5 {A684R:A -> A683R:G: adjacent_3p downward } 0 6 {A683R:G -> A707R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A707R:C -> A683R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A684R:A -> A685R:G: adjacent_5p upward } 0 9 {A685R:G -> A684R:A: adjacent_3p downward } 0 10 {A684R:A -> A706R:A: pairing antiparallel cis 37 Ww/Ww } 0 11 {A706R:A -> A684R:A: pairing antiparallel cis 37 Ww/Ww } 0 12 {A685R:G -> A705R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 13 {A705R:U -> A685R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 14 {A705R:U -> A706R:A: adjacent_5p upward } 0 15 {A706R:A -> A705R:U: adjacent_3p downward } 0 16 {A706R:A -> A707R:C: adjacent_5p upward } 0 17 {A707R:C -> A706R:A: adjacent_3p downward } 0 18 {A707R:C -> A708R:C: adjacent_5p } 0 19 {A708R:C -> A707R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A683R:G 0 1 A684R:A 0 2 A685R:G 0 3 A686R:U 0 4 A704R:A 0 5 A705R:U 0 6 A706R:A 0 7 A707R:C 0 [Edges] 0 {A683R:G -> A684R:A: adjacent_5p upward } 0 1 {A684R:A -> A683R:G: adjacent_3p downward } 0 2 {A683R:G -> A707R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A707R:C -> A683R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A684R:A -> A685R:G: adjacent_5p upward } 0 5 {A685R:G -> A684R:A: adjacent_3p downward } 0 6 {A684R:A -> A706R:A: pairing antiparallel cis 37 Ww/Ww } 0 7 {A706R:A -> A684R:A: pairing antiparallel cis 37 Ww/Ww } 0 8 {A685R:G -> A686R:U: adjacent_5p upward } 0 9 {A686R:U -> A685R:G: adjacent_3p downward } 0 10 {A685R:G -> A705R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 11 {A705R:U -> A685R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 12 {A686R:U -> A704R:A: pairing antiparallel trans XXIV Ws/Hh } 0 13 {A704R:A -> A686R:U: pairing antiparallel trans XXIV Hh/Ws } 0 14 {A704R:A -> A705R:U: adjacent_5p upward } 0 15 {A705R:U -> A704R:A: adjacent_3p downward } 0 16 {A705R:U -> A706R:A: adjacent_5p upward } 0 17 {A706R:A -> A705R:U: adjacent_3p downward } 0 18 {A706R:A -> A707R:C: adjacent_5p upward } 0 19 {A707R:C -> A706R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A684R:A 0 1 A685R:G 0 2 A686R:U 0 3 A687R:A 0 4 A703R:G 0 5 A704R:A 0 6 A705R:U 0 7 A706R:A 0 [Edges] 0 {A684R:A -> A685R:G: adjacent_5p upward } 0 1 {A685R:G -> A684R:A: adjacent_3p downward } 0 2 {A684R:A -> A706R:A: pairing antiparallel cis 37 Ww/Ww } 0 3 {A706R:A -> A684R:A: pairing antiparallel cis 37 Ww/Ww } 0 4 {A685R:G -> A686R:U: adjacent_5p upward } 0 5 {A686R:U -> A685R:G: adjacent_3p downward } 0 6 {A685R:G -> A705R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 7 {A705R:U -> A685R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 8 {A686R:U -> A687R:A: adjacent_5p } 0 9 {A687R:A -> A686R:U: adjacent_3p } 0 10 {A686R:U -> A704R:A: pairing antiparallel trans XXIV Ws/Hh } 0 11 {A704R:A -> A686R:U: pairing antiparallel trans XXIV Hh/Ws } 0 12 {A687R:A -> A703R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {A703R:G -> A687R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {A687R:A -> A704R:A: outward } 0 15 {A704R:A -> A687R:A: outward } 0 16 {A703R:G -> A704R:A: adjacent_5p } 0 17 {A704R:A -> A703R:G: adjacent_3p } 0 18 {A704R:A -> A705R:U: adjacent_5p upward } 0 19 {A705R:U -> A704R:A: adjacent_3p downward } 0 20 {A705R:U -> A706R:A: adjacent_5p upward } 0 21 {A706R:A -> A705R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A687R:A 0 1 A688R:G 0 2 A689R:C 0 3 A690R:G 0 4 A697R:U 0 5 A698R:G 0 6 A699R:C 0 7 A700R:G 0 [Edges] 0 {A687R:A -> A688R:G: adjacent_5p } 0 1 {A688R:G -> A687R:A: adjacent_3p } 0 2 {A687R:A -> A700R:G: pairing parallel trans one_hbond Bs/Ss } 0 3 {A700R:G -> A687R:A: pairing parallel trans one_hbond Ss/Bs } 0 4 {A688R:G -> A689R:C: adjacent_5p upward } 0 5 {A689R:C -> A688R:G: adjacent_3p downward } 0 6 {A688R:G -> A699R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A699R:C -> A688R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A688R:G -> A700R:G: outward } 0 9 {A700R:G -> A688R:G: outward } 0 10 {A689R:C -> A690R:G: adjacent_5p upward } 0 11 {A690R:G -> A689R:C: adjacent_3p downward } 0 12 {A689R:C -> A698R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A698R:G -> A689R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A690R:G -> A697R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 15 {A697R:U -> A690R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 16 {A697R:U -> A698R:G: adjacent_5p upward } 0 17 {A698R:G -> A697R:U: adjacent_3p downward } 0 18 {A698R:G -> A699R:C: adjacent_5p upward } 0 19 {A699R:C -> A698R:G: adjacent_3p downward } 0 20 {A699R:C -> A700R:G: adjacent_5p upward } 0 21 {A700R:G -> A699R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A688R:G 0 1 A689R:C 0 2 A690R:G 0 3 A691R:G 0 4 A696R:A 0 5 A697R:U 0 6 A698R:G 0 7 A699R:C 0 [Edges] 0 {A688R:G -> A689R:C: adjacent_5p upward } 0 1 {A689R:C -> A688R:G: adjacent_3p downward } 0 2 {A688R:G -> A699R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A699R:C -> A688R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A689R:C -> A690R:G: adjacent_5p upward } 0 5 {A690R:G -> A689R:C: adjacent_3p downward } 0 6 {A689R:C -> A698R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A698R:G -> A689R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A690R:G -> A691R:G: adjacent_5p upward } 0 9 {A691R:G -> A690R:G: adjacent_3p downward } 0 10 {A690R:G -> A697R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 11 {A697R:U -> A690R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 12 {A691R:G -> A696R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A696R:A -> A691R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A696R:A -> A697R:U: adjacent_5p upward } 0 15 {A697R:U -> A696R:A: adjacent_3p downward } 0 16 {A697R:U -> A698R:G: adjacent_5p upward } 0 17 {A698R:G -> A697R:U: adjacent_3p downward } 0 18 {A698R:G -> A699R:C: adjacent_5p upward } 0 19 {A699R:C -> A698R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A766R:A 0 1 A767R:A 0 2 A768R:A 0 3 A769R:G 0 4 A810R:C 0 5 A811R:C 0 6 A812R:C 0 7 A813R:U 0 [Edges] 0 {A766R:A -> A767R:A: adjacent_5p upward } 0 1 {A767R:A -> A766R:A: adjacent_3p downward } 0 2 {A766R:A -> A813R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {A813R:U -> A766R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {A767R:A -> A768R:A: adjacent_5p upward } 0 5 {A768R:A -> A767R:A: adjacent_3p downward } 0 6 {A768R:A -> A769R:G: adjacent_5p upward } 0 7 {A769R:G -> A768R:A: adjacent_3p downward } 0 8 {A768R:A -> A811R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 9 {A811R:C -> A768R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 10 {A769R:G -> A810R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A810R:C -> A769R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A810R:C -> A811R:C: adjacent_5p upward } 0 13 {A811R:C -> A810R:C: adjacent_3p downward } 0 14 {A811R:C -> A812R:C: adjacent_5p upward } 0 15 {A812R:C -> A811R:C: adjacent_3p downward } 0 16 {A812R:C -> A813R:U: adjacent_5p } 0 17 {A813R:U -> A812R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A768R:A 0 1 A769R:G 0 2 A770R:C 0 3 A771R:G 0 4 A808R:C 0 5 A809R:G 0 6 A810R:C 0 7 A811R:C 0 [Edges] 0 {A768R:A -> A769R:G: adjacent_5p upward } 0 1 {A769R:G -> A768R:A: adjacent_3p downward } 0 2 {A768R:A -> A811R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 3 {A811R:C -> A768R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 4 {A769R:G -> A770R:C: adjacent_5p upward } 0 5 {A770R:C -> A769R:G: adjacent_3p downward } 0 6 {A769R:G -> A810R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A810R:C -> A769R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A770R:C -> A771R:G: adjacent_5p } 0 9 {A771R:G -> A770R:C: adjacent_3p } 0 10 {A770R:C -> A809R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A809R:G -> A770R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A771R:G -> A808R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A808R:C -> A771R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A771R:G -> A809R:G: outward } 0 15 {A809R:G -> A771R:G: outward } 0 16 {A808R:C -> A809R:G: adjacent_5p upward } 0 17 {A809R:G -> A808R:C: adjacent_3p downward } 0 18 {A809R:G -> A810R:C: adjacent_5p upward } 0 19 {A810R:C -> A809R:G: adjacent_3p downward } 0 20 {A810R:C -> A811R:C: adjacent_5p upward } 0 21 {A811R:C -> A810R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A769R:G 0 1 A770R:C 0 2 A771R:G 0 3 A772R:U 0 4 A807R:A 0 5 A808R:C 0 6 A809R:G 0 7 A810R:C 0 [Edges] 0 {A769R:G -> A770R:C: adjacent_5p upward } 0 1 {A770R:C -> A769R:G: adjacent_3p downward } 0 2 {A769R:G -> A810R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A810R:C -> A769R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A770R:C -> A771R:G: adjacent_5p } 0 5 {A771R:G -> A770R:C: adjacent_3p } 0 6 {A770R:C -> A809R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A809R:G -> A770R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A771R:G -> A772R:U: adjacent_5p upward } 0 9 {A772R:U -> A771R:G: adjacent_3p downward } 0 10 {A771R:G -> A808R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A808R:C -> A771R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A771R:G -> A809R:G: outward } 0 13 {A809R:G -> A771R:G: outward } 0 14 {A772R:U -> A807R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A807R:A -> A772R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A807R:A -> A808R:C: adjacent_5p upward } 0 17 {A808R:C -> A807R:A: adjacent_3p downward } 0 18 {A808R:C -> A809R:G: adjacent_5p upward } 0 19 {A809R:G -> A808R:C: adjacent_3p downward } 0 20 {A809R:G -> A810R:C: adjacent_5p upward } 0 21 {A810R:C -> A809R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A770R:C 0 1 A771R:G 0 2 A772R:U 0 3 A773R:G 0 4 A806R:C 0 5 A807R:A 0 6 A808R:C 0 7 A809R:G 0 [Edges] 0 {A770R:C -> A771R:G: adjacent_5p } 0 1 {A771R:G -> A770R:C: adjacent_3p } 0 2 {A770R:C -> A809R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A809R:G -> A770R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A771R:G -> A772R:U: adjacent_5p upward } 0 5 {A772R:U -> A771R:G: adjacent_3p downward } 0 6 {A771R:G -> A808R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A808R:C -> A771R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A771R:G -> A809R:G: outward } 0 9 {A809R:G -> A771R:G: outward } 0 10 {A772R:U -> A773R:G: adjacent_5p upward } 0 11 {A773R:G -> A772R:U: adjacent_3p downward } 0 12 {A772R:U -> A807R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A807R:A -> A772R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A773R:G -> A806R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A806R:C -> A773R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A773R:G -> A807R:A: outward } 0 17 {A807R:A -> A773R:G: outward } 0 18 {A806R:C -> A807R:A: adjacent_5p } 0 19 {A807R:A -> A806R:C: adjacent_3p } 0 20 {A807R:A -> A808R:C: adjacent_5p upward } 0 21 {A808R:C -> A807R:A: adjacent_3p downward } 0 22 {A808R:C -> A809R:G: adjacent_5p upward } 0 23 {A809R:G -> A808R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A771R:G 0 1 A772R:U 0 2 A773R:G 0 3 A774R:G 0 4 A805R:C 0 5 A806R:C 0 6 A807R:A 0 7 A808R:C 0 [Edges] 0 {A771R:G -> A772R:U: adjacent_5p upward } 0 1 {A772R:U -> A771R:G: adjacent_3p downward } 0 2 {A771R:G -> A808R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A808R:C -> A771R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A772R:U -> A773R:G: adjacent_5p upward } 0 5 {A773R:G -> A772R:U: adjacent_3p downward } 0 6 {A772R:U -> A807R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A807R:A -> A772R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A773R:G -> A774R:G: adjacent_5p upward } 0 9 {A774R:G -> A773R:G: adjacent_3p downward } 0 10 {A773R:G -> A806R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A806R:C -> A773R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A773R:G -> A807R:A: outward } 0 13 {A807R:A -> A773R:G: outward } 0 14 {A774R:G -> A805R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A805R:C -> A774R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A805R:C -> A806R:C: adjacent_5p } 0 17 {A806R:C -> A805R:C: adjacent_3p } 0 18 {A806R:C -> A807R:A: adjacent_5p } 0 19 {A807R:A -> A806R:C: adjacent_3p } 0 20 {A807R:A -> A808R:C: adjacent_5p upward } 0 21 {A808R:C -> A807R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A773R:G 0 1 A774R:G 0 2 A775R:G 0 3 A776R:G 0 4 A803R:G 0 5 A804R:U 0 6 A805R:C 0 7 A806R:C 0 [Edges] 0 {A773R:G -> A774R:G: adjacent_5p upward } 0 1 {A774R:G -> A773R:G: adjacent_3p downward } 0 2 {A773R:G -> A806R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A806R:C -> A773R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A774R:G -> A775R:G: adjacent_5p upward } 0 5 {A775R:G -> A774R:G: adjacent_3p downward } 0 6 {A774R:G -> A805R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A805R:C -> A774R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A775R:G -> A776R:G: adjacent_5p upward } 0 9 {A776R:G -> A775R:G: adjacent_3p downward } 0 10 {A776R:G -> A803R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 11 {A803R:G -> A776R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 12 {A803R:G -> A804R:U: adjacent_5p upward } 0 13 {A804R:U -> A803R:G: adjacent_3p downward } 0 14 {A804R:U -> A805R:C: adjacent_5p } 0 15 {A805R:C -> A804R:U: adjacent_3p } 0 16 {A805R:C -> A806R:C: adjacent_5p } 0 17 {A806R:C -> A805R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A778R:G 0 1 A779R:C 0 2 A780R:A 0 3 A781R:A 0 4 A801R:U 0 5 A802R:A 0 6 A803R:G 0 7 A804R:U 0 [Edges] 0 {A778R:G -> A779R:C: adjacent_5p upward } 0 1 {A779R:C -> A778R:G: adjacent_3p downward } 0 2 {A778R:G -> A804R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A804R:U -> A778R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A779R:C -> A780R:A: adjacent_5p upward } 0 5 {A780R:A -> A779R:C: adjacent_3p downward } 0 6 {A779R:C -> A803R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A803R:G -> A779R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A780R:A -> A781R:A: adjacent_5p } 0 9 {A781R:A -> A780R:A: adjacent_3p } 0 10 {A780R:A -> A802R:A: pairing antiparallel trans one_hbond 41 Ss/Hh } 0 11 {A802R:A -> A780R:A: pairing antiparallel trans one_hbond 41 Hh/Ss } 0 12 {A781R:A -> A801R:U: pairing antiparallel trans XXIV Hh/Ws } 0 13 {A801R:U -> A781R:A: pairing antiparallel trans XXIV Ws/Hh } 0 14 {A781R:A -> A802R:A: outward } 0 15 {A802R:A -> A781R:A: outward } 0 16 {A801R:U -> A802R:A: adjacent_5p upward } 0 17 {A802R:A -> A801R:U: adjacent_3p downward } 0 18 {A802R:A -> A803R:G: adjacent_5p upward } 0 19 {A803R:G -> A802R:A: adjacent_3p downward } 0 20 {A803R:G -> A804R:U: adjacent_5p upward } 0 21 {A804R:U -> A803R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A779R:C 0 1 A780R:A 0 2 A781R:A 0 3 A782R:A 0 4 A800R:G 0 5 A801R:U 0 6 A802R:A 0 7 A803R:G 0 [Edges] 0 {A779R:C -> A780R:A: adjacent_5p upward } 0 1 {A780R:A -> A779R:C: adjacent_3p downward } 0 2 {A779R:C -> A803R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A803R:G -> A779R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A780R:A -> A781R:A: adjacent_5p } 0 5 {A781R:A -> A780R:A: adjacent_3p } 0 6 {A780R:A -> A802R:A: pairing antiparallel trans one_hbond 41 Ss/Hh } 0 7 {A802R:A -> A780R:A: pairing antiparallel trans one_hbond 41 Hh/Ss } 0 8 {A781R:A -> A782R:A: adjacent_5p upward } 0 9 {A782R:A -> A781R:A: adjacent_3p downward } 0 10 {A781R:A -> A801R:U: pairing antiparallel trans XXIV Hh/Ws } 0 11 {A801R:U -> A781R:A: pairing antiparallel trans XXIV Ws/Hh } 0 12 {A781R:A -> A802R:A: outward } 0 13 {A802R:A -> A781R:A: outward } 0 14 {A782R:A -> A800R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {A800R:G -> A782R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {A782R:A -> A801R:U: outward } 0 17 {A801R:U -> A782R:A: outward } 0 18 {A800R:G -> A801R:U: adjacent_5p } 0 19 {A801R:U -> A800R:G: adjacent_3p } 0 20 {A801R:U -> A802R:A: adjacent_5p upward } 0 21 {A802R:A -> A801R:U: adjacent_3p downward } 0 22 {A802R:A -> A803R:G: adjacent_5p upward } 0 23 {A803R:G -> A802R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A780R:A 0 1 A781R:A 0 2 A782R:A 0 3 A783R:C 0 4 A799R:G 0 5 A800R:G 0 6 A801R:U 0 7 A802R:A 0 [Edges] 0 {A780R:A -> A781R:A: adjacent_5p } 0 1 {A781R:A -> A780R:A: adjacent_3p } 0 2 {A780R:A -> A802R:A: pairing antiparallel trans one_hbond 41 Ss/Hh } 0 3 {A802R:A -> A780R:A: pairing antiparallel trans one_hbond 41 Hh/Ss } 0 4 {A781R:A -> A782R:A: adjacent_5p upward } 0 5 {A782R:A -> A781R:A: adjacent_3p downward } 0 6 {A781R:A -> A801R:U: pairing antiparallel trans XXIV Hh/Ws } 0 7 {A801R:U -> A781R:A: pairing antiparallel trans XXIV Ws/Hh } 0 8 {A781R:A -> A802R:A: outward } 0 9 {A802R:A -> A781R:A: outward } 0 10 {A782R:A -> A783R:C: adjacent_5p upward } 0 11 {A783R:C -> A782R:A: adjacent_3p downward } 0 12 {A782R:A -> A800R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {A800R:G -> A782R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {A782R:A -> A801R:U: outward } 0 15 {A801R:U -> A782R:A: outward } 0 16 {A783R:C -> A799R:G: pairing antiparallel cis XIX Ww/Ww } 0 17 {A799R:G -> A783R:C: pairing antiparallel cis XIX Ww/Ww } 0 18 {A799R:G -> A800R:G: adjacent_5p upward } 0 19 {A800R:G -> A799R:G: adjacent_3p downward } 0 20 {A800R:G -> A801R:U: adjacent_5p } 0 21 {A801R:U -> A800R:G: adjacent_3p } 0 22 {A801R:U -> A802R:A: adjacent_5p upward } 0 23 {A802R:A -> A801R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A781R:A 0 1 A782R:A 0 2 A783R:C 0 3 A784R:C 0 4 A798R:G 0 5 A799R:G 0 6 A800R:G 0 7 A801R:U 0 [Edges] 0 {A781R:A -> A782R:A: adjacent_5p upward } 0 1 {A782R:A -> A781R:A: adjacent_3p downward } 0 2 {A781R:A -> A801R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {A801R:U -> A781R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {A782R:A -> A783R:C: adjacent_5p upward } 0 5 {A783R:C -> A782R:A: adjacent_3p downward } 0 6 {A782R:A -> A800R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {A800R:G -> A782R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {A782R:A -> A801R:U: outward } 0 9 {A801R:U -> A782R:A: outward } 0 10 {A783R:C -> A784R:C: adjacent_5p } 0 11 {A784R:C -> A783R:C: adjacent_3p } 0 12 {A783R:C -> A799R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A799R:G -> A783R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A784R:C -> A798R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A798R:G -> A784R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A798R:G -> A799R:G: adjacent_5p upward } 0 17 {A799R:G -> A798R:G: adjacent_3p downward } 0 18 {A799R:G -> A800R:G: adjacent_5p upward } 0 19 {A800R:G -> A799R:G: adjacent_3p downward } 0 20 {A800R:G -> A801R:U: adjacent_5p } 0 21 {A801R:U -> A800R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A782R:A 0 1 A783R:C 0 2 A784R:C 0 3 A785R:G 0 4 A797R:C 0 5 A798R:G 0 6 A799R:G 0 7 A800R:G 0 [Edges] 0 {A782R:A -> A783R:C: adjacent_5p upward } 0 1 {A783R:C -> A782R:A: adjacent_3p downward } 0 2 {A782R:A -> A800R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A800R:G -> A782R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A783R:C -> A784R:C: adjacent_5p } 0 5 {A784R:C -> A783R:C: adjacent_3p } 0 6 {A783R:C -> A799R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A799R:G -> A783R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A784R:C -> A785R:G: adjacent_5p upward } 0 9 {A785R:G -> A784R:C: adjacent_3p downward } 0 10 {A784R:C -> A798R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A798R:G -> A784R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A785R:G -> A797R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A797R:C -> A785R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A785R:G -> A798R:G: outward } 0 15 {A798R:G -> A785R:G: outward } 0 16 {A797R:C -> A798R:G: adjacent_5p } 0 17 {A798R:G -> A797R:C: adjacent_3p } 0 18 {A798R:G -> A799R:G: adjacent_5p upward } 0 19 {A799R:G -> A798R:G: adjacent_3p downward } 0 20 {A799R:G -> A800R:G: adjacent_5p upward } 0 21 {A800R:G -> A799R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A783R:C 0 1 A784R:C 0 2 A785R:G 0 3 A786R:G 0 4 A796R:C 0 5 A797R:C 0 6 A798R:G 0 7 A799R:G 0 [Edges] 0 {A783R:C -> A784R:C: adjacent_5p } 0 1 {A784R:C -> A783R:C: adjacent_3p } 0 2 {A783R:C -> A799R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A799R:G -> A783R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A784R:C -> A785R:G: adjacent_5p upward } 0 5 {A785R:G -> A784R:C: adjacent_3p downward } 0 6 {A784R:C -> A798R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A798R:G -> A784R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A785R:G -> A786R:G: adjacent_5p upward } 0 9 {A786R:G -> A785R:G: adjacent_3p downward } 0 10 {A785R:G -> A797R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A797R:C -> A785R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A785R:G -> A798R:G: outward } 0 13 {A798R:G -> A785R:G: outward } 0 14 {A786R:G -> A796R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A796R:C -> A786R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A786R:G -> A797R:C: outward } 0 17 {A797R:C -> A786R:G: outward } 0 18 {A796R:C -> A797R:C: adjacent_5p upward } 0 19 {A797R:C -> A796R:C: adjacent_3p downward } 0 20 {A797R:C -> A798R:G: adjacent_5p } 0 21 {A798R:G -> A797R:C: adjacent_3p } 0 22 {A798R:G -> A799R:G: adjacent_5p upward } 0 23 {A799R:G -> A798R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A784R:C 0 1 A785R:G 0 2 A786R:G 0 3 A787R:A 0 4 A795R:C 0 5 A796R:C 0 6 A797R:C 0 7 A798R:G 0 [Edges] 0 {A784R:C -> A785R:G: adjacent_5p upward } 0 1 {A785R:G -> A784R:C: adjacent_3p downward } 0 2 {A784R:C -> A798R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A798R:G -> A784R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A785R:G -> A786R:G: adjacent_5p upward } 0 5 {A786R:G -> A785R:G: adjacent_3p downward } 0 6 {A785R:G -> A797R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A797R:C -> A785R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A785R:G -> A798R:G: outward } 0 9 {A798R:G -> A785R:G: outward } 0 10 {A786R:G -> A787R:A: adjacent_5p upward } 0 11 {A787R:A -> A786R:G: adjacent_3p downward } 0 12 {A786R:G -> A796R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A796R:C -> A786R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A786R:G -> A797R:C: outward } 0 15 {A797R:C -> A786R:G: outward } 0 16 {A787R:A -> A795R:C: pairing antiparallel cis one_hbond Ww/Hw } 0 17 {A795R:C -> A787R:A: pairing antiparallel cis one_hbond Hw/Ww } 0 18 {A795R:C -> A796R:C: adjacent_5p } 0 19 {A796R:C -> A795R:C: adjacent_3p } 0 20 {A796R:C -> A797R:C: adjacent_5p upward } 0 21 {A797R:C -> A796R:C: adjacent_3p downward } 0 22 {A797R:C -> A798R:G: adjacent_5p } 0 23 {A798R:G -> A797R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A785R:G 0 1 A786R:G 0 2 A787R:A 0 3 A788R:U 0 4 A794R:A 0 5 A795R:C 0 6 A796R:C 0 7 A797R:C 0 [Edges] 0 {A785R:G -> A786R:G: adjacent_5p upward } 0 1 {A786R:G -> A785R:G: adjacent_3p downward } 0 2 {A785R:G -> A797R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A797R:C -> A785R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A786R:G -> A787R:A: adjacent_5p upward } 0 5 {A787R:A -> A786R:G: adjacent_3p downward } 0 6 {A786R:G -> A796R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A796R:C -> A786R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A786R:G -> A797R:C: outward } 0 9 {A797R:C -> A786R:G: outward } 0 10 {A787R:A -> A788R:U: adjacent_5p upward } 0 11 {A788R:U -> A787R:A: adjacent_3p downward } 0 12 {A787R:A -> A795R:C: pairing antiparallel cis one_hbond Ww/Hw } 0 13 {A795R:C -> A787R:A: pairing antiparallel cis one_hbond Hw/Ww } 0 14 {A788R:U -> A794R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 15 {A794R:A -> A788R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 16 {A794R:A -> A795R:C: adjacent_5p upward } 0 17 {A795R:C -> A794R:A: adjacent_3p downward } 0 18 {A795R:C -> A796R:C: adjacent_5p } 0 19 {A796R:C -> A795R:C: adjacent_3p } 0 20 {A796R:C -> A797R:C: adjacent_5p upward } 0 21 {A797R:C -> A796R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A821R:G 0 1 A822R:C 0 2 A823R:G 0 3 A824R:C 0 4 A876R:G 0 5 A877R:C 0 6 A878R:G 0 7 A879R:C 0 [Edges] 0 {A821R:G -> A822R:C: adjacent_5p upward } 0 1 {A822R:C -> A821R:G: adjacent_3p downward } 0 2 {A821R:G -> A879R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A879R:C -> A821R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A822R:C -> A823R:G: adjacent_5p } 0 5 {A823R:G -> A822R:C: adjacent_3p } 0 6 {A822R:C -> A878R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A878R:G -> A822R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A823R:G -> A824R:C: adjacent_5p upward } 0 9 {A824R:C -> A823R:G: adjacent_3p downward } 0 10 {A823R:G -> A877R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A877R:C -> A823R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A823R:G -> A878R:G: outward } 0 13 {A878R:G -> A823R:G: outward } 0 14 {A824R:C -> A876R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A876R:G -> A824R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A876R:G -> A877R:C: adjacent_5p upward } 0 17 {A877R:C -> A876R:G: adjacent_3p downward } 0 18 {A877R:C -> A878R:G: adjacent_5p } 0 19 {A878R:G -> A877R:C: adjacent_3p } 0 20 {A878R:G -> A879R:C: adjacent_5p upward } 0 21 {A879R:C -> A878R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A822R:C 0 1 A823R:G 0 2 A824R:C 0 3 A825R:G 0 4 A875R:C 0 5 A876R:G 0 6 A877R:C 0 7 A878R:G 0 [Edges] 0 {A822R:C -> A823R:G: adjacent_5p } 0 1 {A823R:G -> A822R:C: adjacent_3p } 0 2 {A822R:C -> A878R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A878R:G -> A822R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A823R:G -> A824R:C: adjacent_5p upward } 0 5 {A824R:C -> A823R:G: adjacent_3p downward } 0 6 {A823R:G -> A877R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A877R:C -> A823R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A823R:G -> A878R:G: outward } 0 9 {A878R:G -> A823R:G: outward } 0 10 {A824R:C -> A825R:G: adjacent_5p upward } 0 11 {A825R:G -> A824R:C: adjacent_3p downward } 0 12 {A824R:C -> A876R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A876R:G -> A824R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A825R:G -> A875R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A875R:C -> A825R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A825R:G -> A876R:G: outward } 0 17 {A876R:G -> A825R:G: outward } 0 18 {A875R:C -> A876R:G: adjacent_5p upward } 0 19 {A876R:G -> A875R:C: adjacent_3p downward } 0 20 {A876R:G -> A877R:C: adjacent_5p upward } 0 21 {A877R:C -> A876R:G: adjacent_3p downward } 0 22 {A877R:C -> A878R:G: adjacent_5p } 0 23 {A878R:G -> A877R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A823R:G 0 1 A824R:C 0 2 A825R:G 0 3 A826R:C 0 4 A874R:G 0 5 A875R:C 0 6 A876R:G 0 7 A877R:C 0 [Edges] 0 {A823R:G -> A824R:C: adjacent_5p upward } 0 1 {A824R:C -> A823R:G: adjacent_3p downward } 0 2 {A823R:G -> A877R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A877R:C -> A823R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A824R:C -> A825R:G: adjacent_5p upward } 0 5 {A825R:G -> A824R:C: adjacent_3p downward } 0 6 {A824R:C -> A876R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A876R:G -> A824R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A825R:G -> A826R:C: adjacent_5p upward } 0 9 {A826R:C -> A825R:G: adjacent_3p downward } 0 10 {A825R:G -> A875R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A875R:C -> A825R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A825R:G -> A876R:G: outward } 0 13 {A876R:G -> A825R:G: outward } 0 14 {A826R:C -> A874R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A874R:G -> A826R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A874R:G -> A875R:C: adjacent_5p upward } 0 17 {A875R:C -> A874R:G: adjacent_3p downward } 0 18 {A875R:C -> A876R:G: adjacent_5p upward } 0 19 {A876R:G -> A875R:C: adjacent_3p downward } 0 20 {A876R:G -> A877R:C: adjacent_5p upward } 0 21 {A877R:C -> A876R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A828R:A 0 1 A829R:G 0 2 A830R:G 0 3 A831R:U 0 4 A855R:G 0 5 A856R:C 0 6 A857R:C 0 7 A858R:G 0 [Edges] 0 {A828R:A -> A829R:G: adjacent_5p upward } 0 1 {A829R:G -> A828R:A: adjacent_3p downward } 0 2 {A828R:A -> A858R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A858R:G -> A828R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A829R:G -> A830R:G: adjacent_5p upward } 0 5 {A830R:G -> A829R:G: adjacent_3p downward } 0 6 {A829R:G -> A857R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A857R:C -> A829R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A830R:G -> A831R:U: adjacent_5p upward } 0 9 {A831R:U -> A830R:G: adjacent_3p downward } 0 10 {A830R:G -> A856R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A856R:C -> A830R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A831R:U -> A855R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A855R:G -> A831R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A855R:G -> A856R:C: adjacent_5p upward } 0 15 {A856R:C -> A855R:G: adjacent_3p downward } 0 16 {A856R:C -> A857R:C: adjacent_5p upward } 0 17 {A857R:C -> A856R:C: adjacent_3p downward } 0 18 {A857R:C -> A858R:G: adjacent_5p upward } 0 19 {A858R:G -> A857R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A829R:G 0 1 A830R:G 0 2 A831R:U 0 3 A832R:C 0 4 A854R:G 0 5 A855R:G 0 6 A856R:C 0 7 A857R:C 0 [Edges] 0 {A829R:G -> A830R:G: adjacent_5p upward } 0 1 {A830R:G -> A829R:G: adjacent_3p downward } 0 2 {A829R:G -> A857R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A857R:C -> A829R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A830R:G -> A831R:U: adjacent_5p upward } 0 5 {A831R:U -> A830R:G: adjacent_3p downward } 0 6 {A830R:G -> A856R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A856R:C -> A830R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A831R:U -> A832R:C: adjacent_5p } 0 9 {A832R:C -> A831R:U: adjacent_3p } 0 10 {A831R:U -> A855R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A855R:G -> A831R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A832R:C -> A854R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A854R:G -> A832R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A854R:G -> A855R:G: adjacent_5p upward } 0 15 {A855R:G -> A854R:G: adjacent_3p downward } 0 16 {A855R:G -> A856R:C: adjacent_5p upward } 0 17 {A856R:C -> A855R:G: adjacent_3p downward } 0 18 {A856R:C -> A857R:C: adjacent_5p upward } 0 19 {A857R:C -> A856R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A830R:G 0 1 A831R:U 0 2 A832R:C 0 3 A833R:U 0 4 A853R:G 0 5 A854R:G 0 6 A855R:G 0 7 A856R:C 0 [Edges] 0 {A830R:G -> A831R:U: adjacent_5p upward } 0 1 {A831R:U -> A830R:G: adjacent_3p downward } 0 2 {A830R:G -> A856R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A856R:C -> A830R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A831R:U -> A832R:C: adjacent_5p } 0 5 {A832R:C -> A831R:U: adjacent_3p } 0 6 {A831R:U -> A855R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A855R:G -> A831R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A832R:C -> A833R:U: adjacent_5p upward } 0 9 {A833R:U -> A832R:C: adjacent_3p downward } 0 10 {A832R:C -> A854R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A854R:G -> A832R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A833R:U -> A853R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A853R:G -> A833R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A853R:G -> A854R:G: adjacent_5p upward } 0 15 {A854R:G -> A853R:G: adjacent_3p downward } 0 16 {A854R:G -> A855R:G: adjacent_5p upward } 0 17 {A855R:G -> A854R:G: adjacent_3p downward } 0 18 {A855R:G -> A856R:C: adjacent_5p upward } 0 19 {A856R:C -> A855R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A831R:U 0 1 A832R:C 0 2 A833R:U 0 3 A834R:C 0 4 A852R:G 0 5 A853R:G 0 6 A854R:G 0 7 A855R:G 0 [Edges] 0 {A831R:U -> A832R:C: adjacent_5p } 0 1 {A832R:C -> A831R:U: adjacent_3p } 0 2 {A831R:U -> A855R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A855R:G -> A831R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A832R:C -> A833R:U: adjacent_5p upward } 0 5 {A833R:U -> A832R:C: adjacent_3p downward } 0 6 {A832R:C -> A854R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A854R:G -> A832R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A833R:U -> A834R:C: adjacent_5p } 0 9 {A834R:C -> A833R:U: adjacent_3p } 0 10 {A833R:U -> A853R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A853R:G -> A833R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A834R:C -> A852R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A852R:G -> A834R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A852R:G -> A853R:G: adjacent_5p upward } 0 15 {A853R:G -> A852R:G: adjacent_3p downward } 0 16 {A853R:G -> A854R:G: adjacent_5p upward } 0 17 {A854R:G -> A853R:G: adjacent_3p downward } 0 18 {A854R:G -> A855R:G: adjacent_5p upward } 0 19 {A855R:G -> A854R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A832R:C 0 1 A833R:U 0 2 A834R:C 0 3 A835R:U 0 4 A851R:G 0 5 A852R:G 0 6 A853R:G 0 7 A854R:G 0 [Edges] 0 {A832R:C -> A833R:U: adjacent_5p upward } 0 1 {A833R:U -> A832R:C: adjacent_3p downward } 0 2 {A832R:C -> A854R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A854R:G -> A832R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A833R:U -> A834R:C: adjacent_5p } 0 5 {A834R:C -> A833R:U: adjacent_3p } 0 6 {A833R:U -> A853R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A853R:G -> A833R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A834R:C -> A835R:U: adjacent_5p upward } 0 9 {A835R:U -> A834R:C: adjacent_3p downward } 0 10 {A834R:C -> A852R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A852R:G -> A834R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A835R:U -> A851R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A851R:G -> A835R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A851R:G -> A852R:G: adjacent_5p upward } 0 15 {A852R:G -> A851R:G: adjacent_3p downward } 0 16 {A852R:G -> A853R:G: adjacent_5p upward } 0 17 {A853R:G -> A852R:G: adjacent_3p downward } 0 18 {A853R:G -> A854R:G: adjacent_5p upward } 0 19 {A854R:G -> A853R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A833R:U 0 1 A834R:C 0 2 A835R:U 0 3 A836R:G 0 4 A850R:U 0 5 A851R:G 0 6 A852R:G 0 7 A853R:G 0 [Edges] 0 {A833R:U -> A834R:C: adjacent_5p } 0 1 {A834R:C -> A833R:U: adjacent_3p } 0 2 {A833R:U -> A853R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A853R:G -> A833R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A834R:C -> A835R:U: adjacent_5p upward } 0 5 {A835R:U -> A834R:C: adjacent_3p downward } 0 6 {A834R:C -> A852R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A852R:G -> A834R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A835R:U -> A836R:G: adjacent_5p } 0 9 {A836R:G -> A835R:U: adjacent_3p } 0 10 {A835R:U -> A851R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A851R:G -> A835R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A836R:G -> A850R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A850R:U -> A836R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A836R:G -> A851R:G: outward } 0 15 {A851R:G -> A836R:G: outward } 0 16 {A850R:U -> A851R:G: adjacent_5p } 0 17 {A851R:G -> A850R:U: adjacent_3p } 0 18 {A851R:G -> A852R:G: adjacent_5p upward } 0 19 {A852R:G -> A851R:G: adjacent_3p downward } 0 20 {A852R:G -> A853R:G: adjacent_5p upward } 0 21 {A853R:G -> A852R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A834R:C 0 1 A835R:U 0 2 A836R:G 0 3 A837R:G 0 4 A849R:C 0 5 A850R:U 0 6 A851R:G 0 7 A852R:G 0 [Edges] 0 {A834R:C -> A835R:U: adjacent_5p upward } 0 1 {A835R:U -> A834R:C: adjacent_3p downward } 0 2 {A834R:C -> A852R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A852R:G -> A834R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A835R:U -> A836R:G: adjacent_5p } 0 5 {A836R:G -> A835R:U: adjacent_3p } 0 6 {A835R:U -> A851R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A851R:G -> A835R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A836R:G -> A837R:G: adjacent_5p upward } 0 9 {A837R:G -> A836R:G: adjacent_3p downward } 0 10 {A836R:G -> A850R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A850R:U -> A836R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A836R:G -> A851R:G: outward } 0 13 {A851R:G -> A836R:G: outward } 0 14 {A837R:G -> A849R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A849R:C -> A837R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A849R:C -> A850R:U: adjacent_5p upward } 0 17 {A850R:U -> A849R:C: adjacent_3p downward } 0 18 {A850R:U -> A851R:G: adjacent_5p } 0 19 {A851R:G -> A850R:U: adjacent_3p } 0 20 {A851R:G -> A852R:G: adjacent_5p upward } 0 21 {A852R:G -> A851R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A835R:U 0 1 A836R:G 0 2 A837R:G 0 3 A838R:G 0 4 A848R:C 0 5 A849R:C 0 6 A850R:U 0 7 A851R:G 0 [Edges] 0 {A835R:U -> A836R:G: adjacent_5p } 0 1 {A836R:G -> A835R:U: adjacent_3p } 0 2 {A835R:U -> A851R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A851R:G -> A835R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A836R:G -> A837R:G: adjacent_5p upward } 0 5 {A837R:G -> A836R:G: adjacent_3p downward } 0 6 {A836R:G -> A850R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A850R:U -> A836R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A836R:G -> A851R:G: outward } 0 9 {A851R:G -> A836R:G: outward } 0 10 {A837R:G -> A838R:G: adjacent_5p upward } 0 11 {A838R:G -> A837R:G: adjacent_3p downward } 0 12 {A837R:G -> A849R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A849R:C -> A837R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A838R:G -> A848R:C: pairing antiparallel cis Ww/Ww } 0 15 {A848R:C -> A838R:G: pairing antiparallel cis Ww/Ww } 0 16 {A848R:C -> A849R:C: adjacent_5p upward } 0 17 {A849R:C -> A848R:C: adjacent_3p downward } 0 18 {A849R:C -> A850R:U: adjacent_5p upward } 0 19 {A850R:U -> A849R:C: adjacent_3p downward } 0 20 {A850R:U -> A851R:G: adjacent_5p } 0 21 {A851R:G -> A850R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A860R:A 0 1 A861R:G 0 2 A862R:C 0 3 A863R:U 0 4 A866R:C 0 5 A867R:G 0 6 A868R:C 0 7 A869R:G 0 [Edges] 0 {A860R:A -> A861R:G: adjacent_5p upward } 0 1 {A861R:G -> A860R:A: adjacent_3p downward } 0 2 {A860R:A -> A869R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A869R:G -> A860R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A861R:G -> A862R:C: adjacent_5p upward } 0 5 {A862R:C -> A861R:G: adjacent_3p downward } 0 6 {A861R:G -> A868R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A868R:C -> A861R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A862R:C -> A863R:U: adjacent_5p upward } 0 9 {A863R:U -> A862R:C: adjacent_3p downward } 0 10 {A862R:C -> A867R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A867R:G -> A862R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A863R:U -> A866R:C: pairing antiparallel trans one_hbond 97 Ss/Hw } 0 13 {A866R:C -> A863R:U: pairing antiparallel trans one_hbond 97 Hw/Ss } 0 14 {A866R:C -> A867R:G: adjacent_5p } 0 15 {A867R:G -> A866R:C: adjacent_3p } 0 16 {A867R:G -> A868R:C: adjacent_5p upward } 0 17 {A868R:C -> A867R:G: adjacent_3p downward } 0 18 {A868R:C -> A869R:G: adjacent_5p upward } 0 19 {A869R:G -> A868R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A885R:G 0 1 A886R:G 0 2 A887R:G 0 3 A888R:G 0 4 A909R:A 0 5 A910R:C 0 6 A911R:U 0 7 A912R:C 0 [Edges] 0 {A885R:G -> A886R:G: adjacent_5p upward } 0 1 {A886R:G -> A885R:G: adjacent_3p downward } 0 2 {A885R:G -> A912R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A912R:C -> A885R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A886R:G -> A887R:G: adjacent_5p upward } 0 5 {A887R:G -> A886R:G: adjacent_3p downward } 0 6 {A886R:G -> A911R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A911R:U -> A886R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A887R:G -> A888R:G: adjacent_5p upward } 0 9 {A888R:G -> A887R:G: adjacent_3p downward } 0 10 {A887R:G -> A910R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A910R:C -> A887R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A888R:G -> A909R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A909R:A -> A888R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A909R:A -> A910R:C: adjacent_5p upward } 0 15 {A910R:C -> A909R:A: adjacent_3p downward } 0 16 {A910R:C -> A911R:U: adjacent_5p upward } 0 17 {A911R:U -> A910R:C: adjacent_3p downward } 0 18 {A911R:U -> A912R:C: adjacent_5p } 0 19 {A912R:C -> A911R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A886R:G 0 1 A887R:G 0 2 A888R:G 0 3 A889R:A 0 4 A908R:A 0 5 A909R:A 0 6 A910R:C 0 7 A911R:U 0 [Edges] 0 {A886R:G -> A887R:G: adjacent_5p upward } 0 1 {A887R:G -> A886R:G: adjacent_3p downward } 0 2 {A886R:G -> A911R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A911R:U -> A886R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A887R:G -> A888R:G: adjacent_5p upward } 0 5 {A888R:G -> A887R:G: adjacent_3p downward } 0 6 {A887R:G -> A910R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A910R:C -> A887R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A888R:G -> A889R:A: adjacent_5p inward } 0 9 {A889R:A -> A888R:G: adjacent_3p inward } 0 10 {A888R:G -> A909R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {A909R:A -> A888R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {A889R:A -> A908R:A: pairing parallel trans II Hh/Hh } 0 13 {A908R:A -> A889R:A: pairing parallel trans II Hh/Hh } 0 14 {A908R:A -> A909R:A: adjacent_5p upward } 0 15 {A909R:A -> A908R:A: adjacent_3p downward } 0 16 {A909R:A -> A910R:C: adjacent_5p upward } 0 17 {A910R:C -> A909R:A: adjacent_3p downward } 0 18 {A910R:C -> A911R:U: adjacent_5p upward } 0 19 {A911R:U -> A910R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A894R:G 0 1 A895R:G 0 2 A896R:C 0 3 A897R:C 0 4 A902R:G 0 5 A903R:G 0 6 A904R:C 0 7 A905R:U 0 [Edges] 0 {A894R:G -> A895R:G: adjacent_5p upward } 0 1 {A895R:G -> A894R:G: adjacent_3p downward } 0 2 {A894R:G -> A905R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A905R:U -> A894R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A895R:G -> A896R:C: adjacent_5p upward } 0 5 {A896R:C -> A895R:G: adjacent_3p downward } 0 6 {A895R:G -> A904R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A904R:C -> A895R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A896R:C -> A897R:C: adjacent_5p upward } 0 9 {A897R:C -> A896R:C: adjacent_3p downward } 0 10 {A896R:C -> A903R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A903R:G -> A896R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A897R:C -> A902R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A902R:G -> A897R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A902R:G -> A903R:G: adjacent_5p upward } 0 15 {A903R:G -> A902R:G: adjacent_3p downward } 0 16 {A903R:G -> A904R:C: adjacent_5p upward } 0 17 {A904R:C -> A903R:G: adjacent_3p downward } 0 18 {A904R:C -> A905R:U: adjacent_5p upward } 0 19 {A905R:U -> A904R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A895R:G 0 1 A896R:C 0 2 A897R:C 0 3 A898R:G 0 4 A901R:A 0 5 A902R:G 0 6 A903R:G 0 7 A904R:C 0 [Edges] 0 {A895R:G -> A896R:C: adjacent_5p upward } 0 1 {A896R:C -> A895R:G: adjacent_3p downward } 0 2 {A895R:G -> A904R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A904R:C -> A895R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A896R:C -> A897R:C: adjacent_5p upward } 0 5 {A897R:C -> A896R:C: adjacent_3p downward } 0 6 {A896R:C -> A903R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A903R:G -> A896R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A897R:C -> A898R:G: adjacent_5p upward } 0 9 {A898R:G -> A897R:C: adjacent_3p downward } 0 10 {A897R:C -> A902R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A902R:G -> A897R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A898R:G -> A901R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 13 {A901R:A -> A898R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 14 {A898R:G -> A902R:G: outward } 0 15 {A902R:G -> A898R:G: outward } 0 16 {A901R:A -> A902R:G: adjacent_5p } 0 17 {A902R:G -> A901R:A: adjacent_3p } 0 18 {A902R:G -> A903R:G: adjacent_5p upward } 0 19 {A903R:G -> A902R:G: adjacent_3p downward } 0 20 {A903R:G -> A904R:C: adjacent_5p upward } 0 21 {A904R:C -> A903R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A927R:G 0 1 A928R:G 0 2 A929R:G 0 3 A930R:C 0 4 A1387R:G 0 5 A1388R:C 0 6 A1389R:C 0 7 A1390R:U 0 [Edges] 0 {A927R:G -> A928R:G: adjacent_5p upward } 0 1 {A928R:G -> A927R:G: adjacent_3p downward } 0 2 {A927R:G -> A1390R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A1390R:U -> A927R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A928R:G -> A929R:G: adjacent_5p upward } 0 5 {A929R:G -> A928R:G: adjacent_3p downward } 0 6 {A928R:G -> A1389R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1389R:C -> A928R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A929R:G -> A930R:C: adjacent_5p upward } 0 9 {A930R:C -> A929R:G: adjacent_3p downward } 0 10 {A929R:G -> A1388R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1388R:C -> A929R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A930R:C -> A1387R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1387R:G -> A930R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1387R:G -> A1388R:C: adjacent_5p upward } 0 15 {A1388R:C -> A1387R:G: adjacent_3p downward } 0 16 {A1388R:C -> A1389R:C: adjacent_5p upward } 0 17 {A1389R:C -> A1388R:C: adjacent_3p downward } 0 18 {A1389R:C -> A1390R:U: adjacent_5p upward } 0 19 {A1390R:U -> A1389R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A928R:G 0 1 A929R:G 0 2 A930R:C 0 3 A931R:C 0 4 A1386R:G 0 5 A1387R:G 0 6 A1388R:C 0 7 A1389R:C 0 [Edges] 0 {A928R:G -> A929R:G: adjacent_5p upward } 0 1 {A929R:G -> A928R:G: adjacent_3p downward } 0 2 {A928R:G -> A1389R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1389R:C -> A928R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A929R:G -> A930R:C: adjacent_5p upward } 0 5 {A930R:C -> A929R:G: adjacent_3p downward } 0 6 {A929R:G -> A1388R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1388R:C -> A929R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A930R:C -> A931R:C: adjacent_5p } 0 9 {A931R:C -> A930R:C: adjacent_3p } 0 10 {A930R:C -> A1387R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1387R:G -> A930R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A931R:C -> A1386R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1386R:G -> A931R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1386R:G -> A1387R:G: adjacent_5p upward } 0 15 {A1387R:G -> A1386R:G: adjacent_3p downward } 0 16 {A1387R:G -> A1388R:C: adjacent_5p upward } 0 17 {A1388R:C -> A1387R:G: adjacent_3p downward } 0 18 {A1388R:C -> A1389R:C: adjacent_5p upward } 0 19 {A1389R:C -> A1388R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A929R:G 0 1 A930R:C 0 2 A931R:C 0 3 A932R:C 0 4 A1385R:G 0 5 A1386R:G 0 6 A1387R:G 0 7 A1388R:C 0 [Edges] 0 {A929R:G -> A930R:C: adjacent_5p upward } 0 1 {A930R:C -> A929R:G: adjacent_3p downward } 0 2 {A929R:G -> A1388R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1388R:C -> A929R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A930R:C -> A931R:C: adjacent_5p } 0 5 {A931R:C -> A930R:C: adjacent_3p } 0 6 {A930R:C -> A1387R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1387R:G -> A930R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A931R:C -> A932R:C: adjacent_5p } 0 9 {A932R:C -> A931R:C: adjacent_3p } 0 10 {A931R:C -> A1386R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1386R:G -> A931R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A932R:C -> A1385R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1385R:G -> A932R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A932R:C -> A1386R:G: outward } 0 15 {A1386R:G -> A932R:C: outward } 0 16 {A1385R:G -> A1386R:G: adjacent_5p upward } 0 17 {A1386R:G -> A1385R:G: adjacent_3p downward } 0 18 {A1386R:G -> A1387R:G: adjacent_5p upward } 0 19 {A1387R:G -> A1386R:G: adjacent_3p downward } 0 20 {A1387R:G -> A1388R:C: adjacent_5p upward } 0 21 {A1388R:C -> A1387R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A930R:C 0 1 A931R:C 0 2 A932R:C 0 3 A933R:G 0 4 A1384R:C 0 5 A1385R:G 0 6 A1386R:G 0 7 A1387R:G 0 [Edges] 0 {A930R:C -> A931R:C: adjacent_5p } 0 1 {A931R:C -> A930R:C: adjacent_3p } 0 2 {A930R:C -> A1387R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1387R:G -> A930R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A931R:C -> A932R:C: adjacent_5p } 0 5 {A932R:C -> A931R:C: adjacent_3p } 0 6 {A931R:C -> A1386R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1386R:G -> A931R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A932R:C -> A933R:G: adjacent_5p } 0 9 {A933R:G -> A932R:C: adjacent_3p } 0 10 {A932R:C -> A1385R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1385R:G -> A932R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A932R:C -> A1386R:G: outward } 0 13 {A1386R:G -> A932R:C: outward } 0 14 {A933R:G -> A1384R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1384R:C -> A933R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A933R:G -> A1385R:G: outward } 0 17 {A1385R:G -> A933R:G: outward } 0 18 {A1384R:C -> A1385R:G: adjacent_5p upward } 0 19 {A1385R:G -> A1384R:C: adjacent_3p downward } 0 20 {A1385R:G -> A1386R:G: adjacent_5p upward } 0 21 {A1386R:G -> A1385R:G: adjacent_3p downward } 0 22 {A1386R:G -> A1387R:G: adjacent_5p upward } 0 23 {A1387R:G -> A1386R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A939R:G 0 1 A940R:C 0 2 A941R:G 0 3 A942R:G 0 4 A1341R:U 0 5 A1342R:C 0 6 A1343R:G 0 7 A1344R:C 0 [Edges] 0 {A939R:G -> A940R:C: adjacent_5p upward } 0 1 {A940R:C -> A939R:G: adjacent_3p downward } 0 2 {A939R:G -> A1344R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1344R:C -> A939R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A940R:C -> A941R:G: adjacent_5p upward } 0 5 {A941R:G -> A940R:C: adjacent_3p downward } 0 6 {A940R:C -> A1343R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1343R:G -> A940R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A941R:G -> A942R:G: adjacent_5p upward } 0 9 {A942R:G -> A941R:G: adjacent_3p downward } 0 10 {A941R:G -> A1342R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1342R:C -> A941R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A941R:G -> A1343R:G: outward } 0 13 {A1343R:G -> A941R:G: outward } 0 14 {A942R:G -> A1341R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A1341R:U -> A942R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A942R:G -> A1342R:C: outward } 0 17 {A1342R:C -> A942R:G: outward } 0 18 {A1341R:U -> A1342R:C: adjacent_5p } 0 19 {A1342R:C -> A1341R:U: adjacent_3p } 0 20 {A1342R:C -> A1343R:G: adjacent_5p } 0 21 {A1343R:G -> A1342R:C: adjacent_3p } 0 22 {A1343R:G -> A1344R:C: adjacent_5p upward } 0 23 {A1344R:C -> A1343R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A940R:C 0 1 A941R:G 0 2 A942R:G 0 3 A943R:U 0 4 A1340R:A 0 5 A1341R:U 0 6 A1342R:C 0 7 A1343R:G 0 [Edges] 0 {A940R:C -> A941R:G: adjacent_5p upward } 0 1 {A941R:G -> A940R:C: adjacent_3p downward } 0 2 {A940R:C -> A1343R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1343R:G -> A940R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A941R:G -> A942R:G: adjacent_5p upward } 0 5 {A942R:G -> A941R:G: adjacent_3p downward } 0 6 {A941R:G -> A1342R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1342R:C -> A941R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A941R:G -> A1343R:G: outward } 0 9 {A1343R:G -> A941R:G: outward } 0 10 {A942R:G -> A943R:U: adjacent_5p upward } 0 11 {A943R:U -> A942R:G: adjacent_3p downward } 0 12 {A942R:G -> A1341R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A1341R:U -> A942R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A942R:G -> A1342R:C: outward } 0 15 {A1342R:C -> A942R:G: outward } 0 16 {A943R:U -> A1340R:A: pairing antiparallel cis XX Ww/Ww } 0 17 {A1340R:A -> A943R:U: pairing antiparallel cis XX Ww/Ww } 0 18 {A1340R:A -> A1341R:U: adjacent_5p upward } 0 19 {A1341R:U -> A1340R:A: adjacent_3p downward } 0 20 {A1341R:U -> A1342R:C: adjacent_5p } 0 21 {A1342R:C -> A1341R:U: adjacent_3p } 0 22 {A1342R:C -> A1343R:G: adjacent_5p } 0 23 {A1343R:G -> A1342R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A941R:G 0 1 A942R:G 0 2 A943R:U 0 3 A944R:G 0 4 A1339R:A 0 5 A1340R:A 0 6 A1341R:U 0 7 A1342R:C 0 [Edges] 0 {A941R:G -> A942R:G: adjacent_5p upward } 0 1 {A942R:G -> A941R:G: adjacent_3p downward } 0 2 {A941R:G -> A1342R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1342R:C -> A941R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A942R:G -> A943R:U: adjacent_5p upward } 0 5 {A943R:U -> A942R:G: adjacent_3p downward } 0 6 {A942R:G -> A1341R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A1341R:U -> A942R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A942R:G -> A1342R:C: outward } 0 9 {A1342R:C -> A942R:G: outward } 0 10 {A943R:U -> A944R:G: adjacent_5p upward } 0 11 {A944R:G -> A943R:U: adjacent_3p downward } 0 12 {A943R:U -> A1340R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A1340R:A -> A943R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A944R:G -> A1339R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {A1339R:A -> A944R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {A1339R:A -> A1340R:A: adjacent_5p upward } 0 17 {A1340R:A -> A1339R:A: adjacent_3p downward } 0 18 {A1340R:A -> A1341R:U: adjacent_5p upward } 0 19 {A1341R:U -> A1340R:A: adjacent_3p downward } 0 20 {A1341R:U -> A1342R:C: adjacent_5p } 0 21 {A1342R:C -> A1341R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A945R:G 0 1 A946R:A 0 2 A947R:G 0 3 A948R:C 0 4 A1233R:G 0 5 A1234R:C 0 6 A1235R:U 0 7 A1236R:A 0 [Edges] 0 {A945R:G -> A946R:A: adjacent_5p upward } 0 1 {A946R:A -> A945R:G: adjacent_3p downward } 0 2 {A945R:G -> A1236R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A1236R:A -> A945R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A946R:A -> A947R:G: adjacent_5p upward } 0 5 {A947R:G -> A946R:A: adjacent_3p downward } 0 6 {A946R:A -> A1235R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A1235R:U -> A946R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A946R:A -> A1236R:A: outward } 0 9 {A1236R:A -> A946R:A: outward } 0 10 {A947R:G -> A948R:C: adjacent_5p upward } 0 11 {A948R:C -> A947R:G: adjacent_3p downward } 0 12 {A947R:G -> A1234R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1234R:C -> A947R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A948R:C -> A1233R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1233R:G -> A948R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1233R:G -> A1234R:C: adjacent_5p upward } 0 17 {A1234R:C -> A1233R:G: adjacent_3p downward } 0 18 {A1234R:C -> A1235R:U: adjacent_5p upward } 0 19 {A1235R:U -> A1234R:C: adjacent_3p downward } 0 20 {A1235R:U -> A1236R:A: adjacent_5p upward } 0 21 {A1236R:A -> A1235R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A946R:A 0 1 A947R:G 0 2 A948R:C 0 3 A949R:A 0 4 A1232R:U 0 5 A1233R:G 0 6 A1234R:C 0 7 A1235R:U 0 [Edges] 0 {A946R:A -> A947R:G: adjacent_5p upward } 0 1 {A947R:G -> A946R:A: adjacent_3p downward } 0 2 {A946R:A -> A1235R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A1235R:U -> A946R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A947R:G -> A948R:C: adjacent_5p upward } 0 5 {A948R:C -> A947R:G: adjacent_3p downward } 0 6 {A947R:G -> A1234R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1234R:C -> A947R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A948R:C -> A949R:A: adjacent_5p } 0 9 {A949R:A -> A948R:C: adjacent_3p } 0 10 {A948R:C -> A1233R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1233R:G -> A948R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A949R:A -> A1232R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A1232R:U -> A949R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A949R:A -> A1233R:G: outward } 0 15 {A1233R:G -> A949R:A: outward } 0 16 {A1232R:U -> A1233R:G: adjacent_5p upward } 0 17 {A1233R:G -> A1232R:U: adjacent_3p downward } 0 18 {A1233R:G -> A1234R:C: adjacent_5p upward } 0 19 {A1234R:C -> A1233R:G: adjacent_3p downward } 0 20 {A1234R:C -> A1235R:U: adjacent_5p upward } 0 21 {A1235R:U -> A1234R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A947R:G 0 1 A948R:C 0 2 A949R:A 0 3 A950R:U 0 4 A1231R:G 0 5 A1232R:U 0 6 A1233R:G 0 7 A1234R:C 0 [Edges] 0 {A947R:G -> A948R:C: adjacent_5p upward } 0 1 {A948R:C -> A947R:G: adjacent_3p downward } 0 2 {A947R:G -> A1234R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1234R:C -> A947R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A948R:C -> A949R:A: adjacent_5p } 0 5 {A949R:A -> A948R:C: adjacent_3p } 0 6 {A948R:C -> A1233R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1233R:G -> A948R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A949R:A -> A950R:U: adjacent_5p upward } 0 9 {A950R:U -> A949R:A: adjacent_3p downward } 0 10 {A949R:A -> A1232R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A1232R:U -> A949R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A949R:A -> A1233R:G: outward } 0 13 {A1233R:G -> A949R:A: outward } 0 14 {A950R:U -> A1231R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A1231R:G -> A950R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A1231R:G -> A1232R:U: adjacent_5p upward } 0 17 {A1232R:U -> A1231R:G: adjacent_3p downward } 0 18 {A1232R:U -> A1233R:G: adjacent_5p upward } 0 19 {A1233R:G -> A1232R:U: adjacent_3p downward } 0 20 {A1233R:G -> A1234R:C: adjacent_5p upward } 0 21 {A1234R:C -> A1233R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A948R:C 0 1 A949R:A 0 2 A950R:U 0 3 A951R:G 0 4 A1230R:C 0 5 A1231R:G 0 6 A1232R:U 0 7 A1233R:G 0 [Edges] 0 {A948R:C -> A949R:A: adjacent_5p } 0 1 {A949R:A -> A948R:C: adjacent_3p } 0 2 {A948R:C -> A1233R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1233R:G -> A948R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A949R:A -> A950R:U: adjacent_5p upward } 0 5 {A950R:U -> A949R:A: adjacent_3p downward } 0 6 {A949R:A -> A1232R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A1232R:U -> A949R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A949R:A -> A1233R:G: outward } 0 9 {A1233R:G -> A949R:A: outward } 0 10 {A950R:U -> A951R:G: adjacent_5p } 0 11 {A951R:G -> A950R:U: adjacent_3p } 0 12 {A950R:U -> A1231R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A1231R:G -> A950R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A951R:G -> A1230R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1230R:C -> A951R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A951R:G -> A1231R:G: outward } 0 17 {A1231R:G -> A951R:G: outward } 0 18 {A1230R:C -> A1231R:G: adjacent_5p } 0 19 {A1231R:G -> A1230R:C: adjacent_3p } 0 20 {A1231R:G -> A1232R:U: adjacent_5p upward } 0 21 {A1232R:U -> A1231R:G: adjacent_3p downward } 0 22 {A1232R:U -> A1233R:G: adjacent_5p upward } 0 23 {A1233R:G -> A1232R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A949R:A 0 1 A950R:U 0 2 A951R:G 0 3 A952R:U 0 4 A1229R:A 0 5 A1230R:C 0 6 A1231R:G 0 7 A1232R:U 0 [Edges] 0 {A949R:A -> A950R:U: adjacent_5p upward } 0 1 {A950R:U -> A949R:A: adjacent_3p downward } 0 2 {A949R:A -> A1232R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A1232R:U -> A949R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A950R:U -> A951R:G: adjacent_5p } 0 5 {A951R:G -> A950R:U: adjacent_3p } 0 6 {A950R:U -> A1231R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A1231R:G -> A950R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A951R:G -> A952R:U: adjacent_5p upward } 0 9 {A952R:U -> A951R:G: adjacent_3p downward } 0 10 {A951R:G -> A1230R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1230R:C -> A951R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A951R:G -> A1231R:G: outward } 0 13 {A1231R:G -> A951R:G: outward } 0 14 {A952R:U -> A1229R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A1229R:A -> A952R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A1229R:A -> A1230R:C: adjacent_5p upward } 0 17 {A1230R:C -> A1229R:A: adjacent_3p downward } 0 18 {A1230R:C -> A1231R:G: adjacent_5p } 0 19 {A1231R:G -> A1230R:C: adjacent_3p } 0 20 {A1231R:G -> A1232R:U: adjacent_5p upward } 0 21 {A1232R:U -> A1231R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A950R:U 0 1 A951R:G 0 2 A952R:U 0 3 A953R:G 0 4 A1228R:C 0 5 A1229R:A 0 6 A1230R:C 0 7 A1231R:G 0 [Edges] 0 {A950R:U -> A951R:G: adjacent_5p } 0 1 {A951R:G -> A950R:U: adjacent_3p } 0 2 {A950R:U -> A1231R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A1231R:G -> A950R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A951R:G -> A952R:U: adjacent_5p upward } 0 5 {A952R:U -> A951R:G: adjacent_3p downward } 0 6 {A951R:G -> A1230R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1230R:C -> A951R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A951R:G -> A1231R:G: outward } 0 9 {A1231R:G -> A951R:G: outward } 0 10 {A952R:U -> A953R:G: adjacent_5p } 0 11 {A953R:G -> A952R:U: adjacent_3p } 0 12 {A952R:U -> A1229R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A1229R:A -> A952R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A953R:G -> A1228R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1228R:C -> A953R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A953R:G -> A1229R:A: outward } 0 17 {A1229R:A -> A953R:G: outward } 0 18 {A1228R:C -> A1229R:A: adjacent_5p upward } 0 19 {A1229R:A -> A1228R:C: adjacent_3p downward } 0 20 {A1229R:A -> A1230R:C: adjacent_5p upward } 0 21 {A1230R:C -> A1229R:A: adjacent_3p downward } 0 22 {A1230R:C -> A1231R:G: adjacent_5p } 0 23 {A1231R:G -> A1230R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A982R:U 0 1 A983R:A 0 2 A984R:C 0 3 A985R:C 0 4 A1220R:G 0 5 A1221R:G 0 6 A1222R:G 0 7 A1223R:C 0 [Edges] 0 {A982R:U -> A983R:A: adjacent_5p } 0 1 {A983R:A -> A982R:U: adjacent_3p } 0 2 {A982R:U -> A1222R:G: pairing antiparallel trans one_hbond Ws/Ww } 0 3 {A1222R:G -> A982R:U: pairing antiparallel trans one_hbond Ww/Ws } 0 4 {A982R:U -> A1223R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 5 {A1223R:C -> A982R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 6 {A983R:A -> A984R:C: adjacent_5p } 0 7 {A984R:C -> A983R:A: adjacent_3p } 0 8 {A983R:A -> A1222R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 9 {A1222R:G -> A983R:A: pairing antiparallel cis one_hbond Ws/Ww } 0 10 {A984R:C -> A985R:C: adjacent_5p upward } 0 11 {A985R:C -> A984R:C: adjacent_3p downward } 0 12 {A984R:C -> A1221R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1221R:G -> A984R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A985R:C -> A1220R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1220R:G -> A985R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1220R:G -> A1221R:G: adjacent_5p upward } 0 17 {A1221R:G -> A1220R:G: adjacent_3p downward } 0 18 {A1221R:G -> A1222R:G: adjacent_5p upward } 0 19 {A1222R:G -> A1221R:G: adjacent_3p downward } 0 20 {A1222R:G -> A1223R:C: adjacent_5p upward } 0 21 {A1223R:C -> A1222R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 . 2 . 7 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 3 9 . . . 19 . 20 7 5 . . . . . 21 . [GraphModel] [Vertices] 0 A983R:A 0 1 A984R:C 0 2 A985R:C 0 3 A986R:A 0 4 A1219R:U 0 5 A1220R:G 0 6 A1221R:G 0 7 A1222R:G 0 [Edges] 0 {A983R:A -> A984R:C: adjacent_5p } 0 1 {A984R:C -> A983R:A: adjacent_3p } 0 2 {A983R:A -> A1222R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 3 {A1222R:G -> A983R:A: pairing antiparallel cis one_hbond Ws/Ww } 0 4 {A984R:C -> A985R:C: adjacent_5p upward } 0 5 {A985R:C -> A984R:C: adjacent_3p downward } 0 6 {A984R:C -> A1221R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1221R:G -> A984R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A985R:C -> A986R:A: adjacent_5p } 0 9 {A986R:A -> A985R:C: adjacent_3p } 0 10 {A985R:C -> A1220R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1220R:G -> A985R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A986R:A -> A1219R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A1219R:U -> A986R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A986R:A -> A1220R:G: outward } 0 15 {A1220R:G -> A986R:A: outward } 0 16 {A1219R:U -> A1220R:G: adjacent_5p upward } 0 17 {A1220R:G -> A1219R:U: adjacent_3p downward } 0 18 {A1220R:G -> A1221R:G: adjacent_5p upward } 0 19 {A1221R:G -> A1220R:G: adjacent_3p downward } 0 20 {A1221R:G -> A1222R:G: adjacent_5p upward } 0 21 {A1222R:G -> A1221R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A984R:C 0 1 A985R:C 0 2 A986R:A 0 3 A987R:G 0 4 A1218R:C 0 5 A1219R:U 0 6 A1220R:G 0 7 A1221R:G 0 [Edges] 0 {A984R:C -> A985R:C: adjacent_5p upward } 0 1 {A985R:C -> A984R:C: adjacent_3p downward } 0 2 {A984R:C -> A1221R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1221R:G -> A984R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A985R:C -> A986R:A: adjacent_5p } 0 5 {A986R:A -> A985R:C: adjacent_3p } 0 6 {A985R:C -> A1220R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1220R:G -> A985R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A986R:A -> A987R:G: adjacent_5p upward } 0 9 {A987R:G -> A986R:A: adjacent_3p downward } 0 10 {A986R:A -> A1219R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A1219R:U -> A986R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A986R:A -> A1220R:G: outward } 0 13 {A1220R:G -> A986R:A: outward } 0 14 {A987R:G -> A1218R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1218R:C -> A987R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1218R:C -> A1219R:U: adjacent_5p upward } 0 17 {A1219R:U -> A1218R:C: adjacent_3p downward } 0 18 {A1219R:U -> A1220R:G: adjacent_5p upward } 0 19 {A1220R:G -> A1219R:U: adjacent_3p downward } 0 20 {A1220R:G -> A1221R:G: adjacent_5p upward } 0 21 {A1221R:G -> A1220R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A985R:C 0 1 A986R:A 0 2 A987R:G 0 3 A988R:G 0 4 A1217R:C 0 5 A1218R:C 0 6 A1219R:U 0 7 A1220R:G 0 [Edges] 0 {A985R:C -> A986R:A: adjacent_5p } 0 1 {A986R:A -> A985R:C: adjacent_3p } 0 2 {A985R:C -> A1220R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1220R:G -> A985R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A986R:A -> A987R:G: adjacent_5p upward } 0 5 {A987R:G -> A986R:A: adjacent_3p downward } 0 6 {A986R:A -> A1219R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A1219R:U -> A986R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A986R:A -> A1220R:G: outward } 0 9 {A1220R:G -> A986R:A: outward } 0 10 {A987R:G -> A988R:G: adjacent_5p upward } 0 11 {A988R:G -> A987R:G: adjacent_3p downward } 0 12 {A987R:G -> A1218R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1218R:C -> A987R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A988R:G -> A1217R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1217R:C -> A988R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1217R:C -> A1218R:C: adjacent_5p upward } 0 17 {A1218R:C -> A1217R:C: adjacent_3p downward } 0 18 {A1218R:C -> A1219R:U: adjacent_5p upward } 0 19 {A1219R:U -> A1218R:C: adjacent_3p downward } 0 20 {A1219R:U -> A1220R:G: adjacent_5p upward } 0 21 {A1220R:G -> A1219R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A986R:A 0 1 A987R:G 0 2 A988R:G 0 3 A989R:C 0 4 A1216R:G 0 5 A1217R:C 0 6 A1218R:C 0 7 A1219R:U 0 [Edges] 0 {A986R:A -> A987R:G: adjacent_5p upward } 0 1 {A987R:G -> A986R:A: adjacent_3p downward } 0 2 {A986R:A -> A1219R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A1219R:U -> A986R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A987R:G -> A988R:G: adjacent_5p upward } 0 5 {A988R:G -> A987R:G: adjacent_3p downward } 0 6 {A987R:G -> A1218R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1218R:C -> A987R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A988R:G -> A989R:C: adjacent_5p upward } 0 9 {A989R:C -> A988R:G: adjacent_3p downward } 0 10 {A988R:G -> A1217R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1217R:C -> A988R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A989R:C -> A1216R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1216R:G -> A989R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1216R:G -> A1217R:C: adjacent_5p upward } 0 15 {A1217R:C -> A1216R:G: adjacent_3p downward } 0 16 {A1217R:C -> A1218R:C: adjacent_5p upward } 0 17 {A1218R:C -> A1217R:C: adjacent_3p downward } 0 18 {A1218R:C -> A1219R:U: adjacent_5p upward } 0 19 {A1219R:U -> A1218R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A987R:G 0 1 A988R:G 0 2 A989R:C 0 3 A990R:C 0 4 A1215R:G 0 5 A1216R:G 0 6 A1217R:C 0 7 A1218R:C 0 [Edges] 0 {A987R:G -> A988R:G: adjacent_5p upward } 0 1 {A988R:G -> A987R:G: adjacent_3p downward } 0 2 {A987R:G -> A1218R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1218R:C -> A987R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A988R:G -> A989R:C: adjacent_5p upward } 0 5 {A989R:C -> A988R:G: adjacent_3p downward } 0 6 {A988R:G -> A1217R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1217R:C -> A988R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A989R:C -> A990R:C: adjacent_5p } 0 9 {A990R:C -> A989R:C: adjacent_3p } 0 10 {A989R:C -> A1216R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1216R:G -> A989R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A990R:C -> A1215R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1215R:G -> A990R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A990R:C -> A1216R:G: outward } 0 15 {A1216R:G -> A990R:C: outward } 0 16 {A1215R:G -> A1216R:G: adjacent_5p upward } 0 17 {A1216R:G -> A1215R:G: adjacent_3p downward } 0 18 {A1216R:G -> A1217R:C: adjacent_5p upward } 0 19 {A1217R:C -> A1216R:G: adjacent_3p downward } 0 20 {A1217R:C -> A1218R:C: adjacent_5p upward } 0 21 {A1218R:C -> A1217R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A995R:C 0 1 A996R:A 0 2 A997R:U 0 3 A998R:G 0 4 A1043R:C 0 5 A1044R:A 0 6 A1045R:C 0 7 A1046R:A 0 [Edges] 0 {A995R:C -> A996R:A: adjacent_5p } 0 1 {A996R:A -> A995R:C: adjacent_3p } 0 2 {A995R:C -> A1046R:A: pairing antiparallel cis one_hbond 74 Wh/Ss } 0 3 {A1046R:A -> A995R:C: pairing antiparallel cis one_hbond 74 Ss/Wh } 0 4 {A996R:A -> A997R:U: adjacent_5p upward } 0 5 {A997R:U -> A996R:A: adjacent_3p downward } 0 6 {A997R:U -> A998R:G: adjacent_5p upward } 0 7 {A998R:G -> A997R:U: adjacent_3p downward } 0 8 {A997R:U -> A1044R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A1044R:A -> A997R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A998R:G -> A1043R:C: pairing antiparallel cis 128 Ws/Ww } 0 11 {A1043R:C -> A998R:G: pairing antiparallel cis 128 Ww/Ws } 0 12 {A998R:G -> A1044R:A: outward } 0 13 {A1044R:A -> A998R:G: outward } 0 14 {A1043R:C -> A1044R:A: adjacent_5p } 0 15 {A1044R:A -> A1043R:C: adjacent_3p } 0 16 {A1044R:A -> A1045R:C: adjacent_5p } 0 17 {A1045R:C -> A1044R:A: adjacent_3p } 0 18 {A1045R:C -> A1046R:A: adjacent_5p } 0 19 {A1046R:A -> A1045R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 12 . . 4 . . . 11 . 14 . . 5 . . 9 13 15 . 16 . 6 . . . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1007R:C 0 1 A1008R:C 0 2 A1009R:G 0 3 A1010R:G 0 4 A1019R:C 0 5 A1020R:U 0 6 A1021R:G 0 7 A1022R:G 0 [Edges] 0 {A1007R:C -> A1008R:C: adjacent_5p } 0 1 {A1008R:C -> A1007R:C: adjacent_3p } 0 2 {A1007R:C -> A1022R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 3 {A1022R:G -> A1007R:C: pairing antiparallel cis one_hbond Ws/Ww } 0 4 {A1008R:C -> A1009R:G: adjacent_5p } 0 5 {A1009R:G -> A1008R:C: adjacent_3p } 0 6 {A1009R:G -> A1010R:G: adjacent_5p upward } 0 7 {A1010R:G -> A1009R:G: adjacent_3p downward } 0 8 {A1010R:G -> A1019R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A1019R:C -> A1010R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A1019R:C -> A1020R:U: adjacent_5p upward } 0 11 {A1020R:U -> A1019R:C: adjacent_3p downward } 0 12 {A1020R:U -> A1021R:G: adjacent_5p upward } 0 13 {A1021R:G -> A1020R:U: adjacent_3p downward } 0 14 {A1021R:G -> A1022R:G: adjacent_5p } 0 15 {A1022R:G -> A1021R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 . 6 . . . . . 13 . 14 7 3 . . . . . 15 . [GraphModel] [Vertices] 0 A1010R:G 0 1 A1011R:G 0 2 A1012R:U 0 3 A1013R:G 0 4 A1016R:A 0 5 A1017R:G 0 6 A1018R:C 0 7 A1019R:C 0 [Edges] 0 {A1010R:G -> A1011R:G: adjacent_5p upward } 0 1 {A1011R:G -> A1010R:G: adjacent_3p downward } 0 2 {A1010R:G -> A1019R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1019R:C -> A1010R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1011R:G -> A1012R:U: adjacent_5p upward } 0 5 {A1012R:U -> A1011R:G: adjacent_3p downward } 0 6 {A1011R:G -> A1018R:C: pairing antiparallel cis one_hbond 130 Ww/Ww } 0 7 {A1018R:C -> A1011R:G: pairing antiparallel cis one_hbond 130 Ww/Ww } 0 8 {A1012R:U -> A1013R:G: adjacent_5p upward } 0 9 {A1013R:G -> A1012R:U: adjacent_3p downward } 0 10 {A1012R:U -> A1017R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A1017R:G -> A1012R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A1013R:G -> A1016R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 13 {A1016R:A -> A1013R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 14 {A1016R:A -> A1017R:G: adjacent_5p upward } 0 15 {A1017R:G -> A1016R:A: adjacent_3p downward } 0 16 {A1017R:G -> A1018R:C: adjacent_5p upward } 0 17 {A1018R:C -> A1017R:G: adjacent_3p downward } 0 18 {A1018R:C -> A1019R:C: adjacent_5p upward } 0 19 {A1019R:C -> A1018R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1055R:A 0 1 A1056R:U 0 2 A1057R:G 0 3 A1058R:G 0 4 A1202R:G 0 5 A1203R:C 0 6 A1204R:A 0 7 A1205R:U 0 [Edges] 0 {A1055R:A -> A1056R:U: adjacent_5p upward } 0 1 {A1056R:U -> A1055R:A: adjacent_3p downward } 0 2 {A1055R:A -> A1205R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 3 {A1205R:U -> A1055R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 4 {A1056R:U -> A1057R:G: adjacent_5p } 0 5 {A1057R:G -> A1056R:U: adjacent_3p } 0 6 {A1056R:U -> A1204R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A1204R:A -> A1056R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A1057R:G -> A1058R:G: adjacent_5p upward } 0 9 {A1058R:G -> A1057R:G: adjacent_3p downward } 0 10 {A1057R:G -> A1203R:C: pairing antiparallel cis Ww/Ww } 0 11 {A1203R:C -> A1057R:G: pairing antiparallel cis Ww/Ww } 0 12 {A1057R:G -> A1204R:A: outward } 0 13 {A1204R:A -> A1057R:G: outward } 0 14 {A1058R:G -> A1202R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 15 {A1202R:G -> A1058R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 16 {A1202R:G -> A1203R:C: adjacent_5p upward } 0 17 {A1203R:C -> A1202R:G: adjacent_3p downward } 0 18 {A1203R:C -> A1204R:A: adjacent_5p upward } 0 19 {A1204R:A -> A1203R:C: adjacent_3p downward } 0 20 {A1204R:A -> A1205R:U: adjacent_5p upward } 0 21 {A1205R:U -> A1204R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1061R:G 0 1 A1062R:U 0 2 A1063R:C 0 3 A1064R:G 0 4 A1192R:C 0 5 A1193R:G 0 6 A1194R:U 0 7 A1195R:C 0 [Edges] 0 {A1061R:G -> A1062R:U: adjacent_5p upward } 0 1 {A1062R:U -> A1061R:G: adjacent_3p downward } 0 2 {A1061R:G -> A1195R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1195R:C -> A1061R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1062R:U -> A1063R:C: adjacent_5p } 0 5 {A1063R:C -> A1062R:U: adjacent_3p } 0 6 {A1063R:C -> A1064R:G: adjacent_5p inward } 0 7 {A1064R:G -> A1063R:C: adjacent_3p inward } 0 8 {A1063R:C -> A1193R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A1193R:G -> A1063R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A1064R:G -> A1192R:C: pairing parallel cis one_hbond Wh/Hw } 0 11 {A1192R:C -> A1064R:G: pairing parallel cis one_hbond Hw/Wh } 0 12 {A1192R:C -> A1193R:G: adjacent_5p upward } 0 13 {A1193R:G -> A1192R:C: adjacent_3p downward } 0 14 {A1193R:G -> A1194R:U: adjacent_5p upward } 0 15 {A1194R:U -> A1193R:G: adjacent_3p downward } 0 16 {A1194R:U -> A1195R:C: adjacent_5p upward } 0 17 {A1195R:C -> A1194R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A1068R:G 0 1 A1069R:C 0 2 A1070R:U 0 3 A1071R:C 0 4 A1104R:G 0 5 A1105R:A 0 6 A1106R:G 0 7 A1107R:C 0 [Edges] 0 {A1068R:G -> A1069R:C: adjacent_5p upward } 0 1 {A1069R:C -> A1068R:G: adjacent_3p downward } 0 2 {A1068R:G -> A1107R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1107R:C -> A1068R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1069R:C -> A1070R:U: adjacent_5p upward } 0 5 {A1070R:U -> A1069R:C: adjacent_3p downward } 0 6 {A1069R:C -> A1106R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1106R:G -> A1069R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1070R:U -> A1071R:C: adjacent_5p } 0 9 {A1071R:C -> A1070R:U: adjacent_3p } 0 10 {A1070R:U -> A1105R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A1105R:A -> A1070R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A1071R:C -> A1104R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1104R:G -> A1071R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1104R:G -> A1105R:A: adjacent_5p upward } 0 15 {A1105R:A -> A1104R:G: adjacent_3p downward } 0 16 {A1105R:A -> A1106R:G: adjacent_5p upward } 0 17 {A1106R:G -> A1105R:A: adjacent_3p downward } 0 18 {A1106R:G -> A1107R:C: adjacent_5p upward } 0 19 {A1107R:C -> A1106R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1069R:C 0 1 A1070R:U 0 2 A1071R:C 0 3 A1072R:G 0 4 A1103R:C 0 5 A1104R:G 0 6 A1105R:A 0 7 A1106R:G 0 [Edges] 0 {A1069R:C -> A1070R:U: adjacent_5p upward } 0 1 {A1070R:U -> A1069R:C: adjacent_3p downward } 0 2 {A1069R:C -> A1106R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1106R:G -> A1069R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1070R:U -> A1071R:C: adjacent_5p } 0 5 {A1071R:C -> A1070R:U: adjacent_3p } 0 6 {A1070R:U -> A1105R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A1105R:A -> A1070R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A1071R:C -> A1072R:G: adjacent_5p } 0 9 {A1072R:G -> A1071R:C: adjacent_3p } 0 10 {A1071R:C -> A1104R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1104R:G -> A1071R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1072R:G -> A1103R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1103R:C -> A1072R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1072R:G -> A1104R:G: outward } 0 15 {A1104R:G -> A1072R:G: outward } 0 16 {A1103R:C -> A1104R:G: adjacent_5p upward } 0 17 {A1104R:G -> A1103R:C: adjacent_3p downward } 0 18 {A1104R:G -> A1105R:A: adjacent_5p upward } 0 19 {A1105R:A -> A1104R:G: adjacent_3p downward } 0 20 {A1105R:A -> A1106R:G: adjacent_5p upward } 0 21 {A1106R:G -> A1105R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1070R:U 0 1 A1071R:C 0 2 A1072R:G 0 3 A1073R:U 0 4 A1102R:A 0 5 A1103R:C 0 6 A1104R:G 0 7 A1105R:A 0 [Edges] 0 {A1070R:U -> A1071R:C: adjacent_5p } 0 1 {A1071R:C -> A1070R:U: adjacent_3p } 0 2 {A1070R:U -> A1105R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A1105R:A -> A1070R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A1071R:C -> A1072R:G: adjacent_5p } 0 5 {A1072R:G -> A1071R:C: adjacent_3p } 0 6 {A1071R:C -> A1104R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1104R:G -> A1071R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1072R:G -> A1073R:U: adjacent_5p upward } 0 9 {A1073R:U -> A1072R:G: adjacent_3p downward } 0 10 {A1072R:G -> A1103R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1103R:C -> A1072R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1072R:G -> A1104R:G: outward } 0 13 {A1104R:G -> A1072R:G: outward } 0 14 {A1073R:U -> A1102R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A1102R:A -> A1073R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A1102R:A -> A1103R:C: adjacent_5p upward } 0 17 {A1103R:C -> A1102R:A: adjacent_3p downward } 0 18 {A1103R:C -> A1104R:G: adjacent_5p upward } 0 19 {A1104R:G -> A1103R:C: adjacent_3p downward } 0 20 {A1104R:G -> A1105R:A: adjacent_5p upward } 0 21 {A1105R:A -> A1104R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1071R:C 0 1 A1072R:G 0 2 A1073R:U 0 3 A1074R:G 0 4 A1101R:A 0 5 A1102R:A 0 6 A1103R:C 0 7 A1104R:G 0 [Edges] 0 {A1071R:C -> A1072R:G: adjacent_5p } 0 1 {A1072R:G -> A1071R:C: adjacent_3p } 0 2 {A1071R:C -> A1104R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1104R:G -> A1071R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1072R:G -> A1073R:U: adjacent_5p upward } 0 5 {A1073R:U -> A1072R:G: adjacent_3p downward } 0 6 {A1072R:G -> A1103R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1103R:C -> A1072R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1072R:G -> A1104R:G: outward } 0 9 {A1104R:G -> A1072R:G: outward } 0 10 {A1073R:U -> A1074R:G: adjacent_5p upward } 0 11 {A1074R:G -> A1073R:U: adjacent_3p downward } 0 12 {A1073R:U -> A1102R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A1102R:A -> A1073R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A1074R:G -> A1101R:A: pairing parallel trans one_hbond Ss/Ss } 0 15 {A1101R:A -> A1074R:G: pairing parallel trans one_hbond Ss/Ss } 0 16 {A1074R:G -> A1102R:A: outward } 0 17 {A1102R:A -> A1074R:G: outward } 0 18 {A1101R:A -> A1102R:A: adjacent_5p } 0 19 {A1102R:A -> A1101R:A: adjacent_3p } 0 20 {A1102R:A -> A1103R:C: adjacent_5p upward } 0 21 {A1103R:C -> A1102R:A: adjacent_3p downward } 0 22 {A1103R:C -> A1104R:G: adjacent_5p upward } 0 23 {A1104R:G -> A1103R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A1086R:U 0 1 A1087R:G 0 2 A1088R:G 0 3 A1089R:G 0 4 A1096R:C 0 5 A1097R:C 0 6 A1098R:C 0 7 A1099R:G 0 [Edges] 0 {A1086R:U -> A1087R:G: adjacent_5p upward } 0 1 {A1087R:G -> A1086R:U: adjacent_3p downward } 0 2 {A1086R:U -> A1099R:G: pairing antiparallel cis one_hbond 94 Wh/Ww } 0 3 {A1099R:G -> A1086R:U: pairing antiparallel cis one_hbond 94 Ww/Wh } 0 4 {A1087R:G -> A1088R:G: adjacent_5p upward } 0 5 {A1088R:G -> A1087R:G: adjacent_3p downward } 0 6 {A1087R:G -> A1098R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1098R:C -> A1087R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1087R:G -> A1099R:G: outward } 0 9 {A1099R:G -> A1087R:G: outward } 0 10 {A1088R:G -> A1089R:G: adjacent_5p upward } 0 11 {A1089R:G -> A1088R:G: adjacent_3p downward } 0 12 {A1088R:G -> A1097R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1097R:C -> A1088R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1089R:G -> A1096R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1096R:C -> A1089R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1089R:G -> A1097R:C: outward } 0 17 {A1097R:C -> A1089R:G: outward } 0 18 {A1096R:C -> A1097R:C: adjacent_5p } 0 19 {A1097R:C -> A1096R:C: adjacent_3p } 0 20 {A1097R:C -> A1098R:C: adjacent_5p upward } 0 21 {A1098R:C -> A1097R:C: adjacent_3p downward } 0 22 {A1098R:C -> A1099R:G: adjacent_5p upward } 0 23 {A1099R:G -> A1098R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A1087R:G 0 1 A1088R:G 0 2 A1089R:G 0 3 A1090R:U 0 4 A1095R:U 0 5 A1096R:C 0 6 A1097R:C 0 7 A1098R:C 0 [Edges] 0 {A1087R:G -> A1088R:G: adjacent_5p upward } 0 1 {A1088R:G -> A1087R:G: adjacent_3p downward } 0 2 {A1087R:G -> A1098R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1098R:C -> A1087R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1088R:G -> A1089R:G: adjacent_5p upward } 0 5 {A1089R:G -> A1088R:G: adjacent_3p downward } 0 6 {A1088R:G -> A1097R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1097R:C -> A1088R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1089R:G -> A1090R:U: adjacent_5p upward } 0 9 {A1090R:U -> A1089R:G: adjacent_3p downward } 0 10 {A1089R:G -> A1096R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1096R:C -> A1089R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1089R:G -> A1097R:C: outward } 0 13 {A1097R:C -> A1089R:G: outward } 0 14 {A1090R:U -> A1095R:U: pairing antiparallel cis XVI Ws/Ww } 0 15 {A1095R:U -> A1090R:U: pairing antiparallel cis XVI Ww/Ws } 0 16 {A1095R:U -> A1096R:C: adjacent_5p upward } 0 17 {A1096R:C -> A1095R:U: adjacent_3p downward } 0 18 {A1096R:C -> A1097R:C: adjacent_5p } 0 19 {A1097R:C -> A1096R:C: adjacent_3p } 0 20 {A1097R:C -> A1098R:C: adjacent_5p upward } 0 21 {A1098R:C -> A1097R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1113R:C 0 1 A1114R:C 0 2 A1115R:C 0 3 A1116R:C 0 4 A1184R:G 0 5 A1185R:G 0 6 A1186R:G 0 7 A1187R:G 0 [Edges] 0 {A1113R:C -> A1114R:C: adjacent_5p } 0 1 {A1114R:C -> A1113R:C: adjacent_3p } 0 2 {A1113R:C -> A1187R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1187R:G -> A1113R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1114R:C -> A1115R:C: adjacent_5p upward } 0 5 {A1115R:C -> A1114R:C: adjacent_3p downward } 0 6 {A1114R:C -> A1186R:G: pairing antiparallel cis Ww/Ww } 0 7 {A1186R:G -> A1114R:C: pairing antiparallel cis Ww/Ww } 0 8 {A1114R:C -> A1187R:G: outward } 0 9 {A1187R:G -> A1114R:C: outward } 0 10 {A1115R:C -> A1116R:C: adjacent_5p upward } 0 11 {A1116R:C -> A1115R:C: adjacent_3p downward } 0 12 {A1115R:C -> A1185R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1185R:G -> A1115R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1116R:C -> A1184R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1184R:G -> A1116R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1184R:G -> A1185R:G: adjacent_5p upward } 0 17 {A1185R:G -> A1184R:G: adjacent_3p downward } 0 18 {A1185R:G -> A1186R:G: adjacent_5p upward } 0 19 {A1186R:G -> A1185R:G: adjacent_3p downward } 0 20 {A1186R:G -> A1187R:G: adjacent_5p upward } 0 21 {A1187R:G -> A1186R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A1118R:C 0 1 A1119R:C 0 2 A1120R:G 0 3 A1121R:U 0 4 A1152R:A 0 5 A1153R:C 0 6 A1154R:G 0 7 A1155R:G 0 [Edges] 0 {A1118R:C -> A1119R:C: adjacent_5p upward } 0 1 {A1119R:C -> A1118R:C: adjacent_3p downward } 0 2 {A1118R:C -> A1155R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1155R:G -> A1118R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1119R:C -> A1120R:G: adjacent_5p } 0 5 {A1120R:G -> A1119R:C: adjacent_3p } 0 6 {A1119R:C -> A1154R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1154R:G -> A1119R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1120R:G -> A1121R:U: adjacent_5p upward } 0 9 {A1121R:U -> A1120R:G: adjacent_3p downward } 0 10 {A1120R:G -> A1153R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1153R:C -> A1120R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1120R:G -> A1154R:G: outward } 0 13 {A1154R:G -> A1120R:G: outward } 0 14 {A1121R:U -> A1152R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A1152R:A -> A1121R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A1152R:A -> A1153R:C: adjacent_5p upward } 0 17 {A1153R:C -> A1152R:A: adjacent_3p downward } 0 18 {A1153R:C -> A1154R:G: adjacent_5p upward } 0 19 {A1154R:G -> A1153R:C: adjacent_3p downward } 0 20 {A1154R:G -> A1155R:G: adjacent_5p upward } 0 21 {A1155R:G -> A1154R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1119R:C 0 1 A1120R:G 0 2 A1121R:U 0 3 A1122R:U 0 4 A1151R:A 0 5 A1152R:A 0 6 A1153R:C 0 7 A1154R:G 0 [Edges] 0 {A1119R:C -> A1120R:G: adjacent_5p } 0 1 {A1120R:G -> A1119R:C: adjacent_3p } 0 2 {A1119R:C -> A1154R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1154R:G -> A1119R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1120R:G -> A1121R:U: adjacent_5p upward } 0 5 {A1121R:U -> A1120R:G: adjacent_3p downward } 0 6 {A1120R:G -> A1153R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1153R:C -> A1120R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1120R:G -> A1154R:G: outward } 0 9 {A1154R:G -> A1120R:G: outward } 0 10 {A1121R:U -> A1122R:U: adjacent_5p upward } 0 11 {A1122R:U -> A1121R:U: adjacent_3p downward } 0 12 {A1121R:U -> A1152R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A1152R:A -> A1121R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A1122R:U -> A1151R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 15 {A1151R:A -> A1122R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 16 {A1151R:A -> A1152R:A: adjacent_5p upward } 0 17 {A1152R:A -> A1151R:A: adjacent_3p downward } 0 18 {A1152R:A -> A1153R:C: adjacent_5p upward } 0 19 {A1153R:C -> A1152R:A: adjacent_3p downward } 0 20 {A1153R:C -> A1154R:G: adjacent_5p upward } 0 21 {A1154R:G -> A1153R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A1120R:G 0 1 A1121R:U 0 2 A1122R:U 0 3 A1123R:A 0 4 A1150R:U 0 5 A1151R:A 0 6 A1152R:A 0 7 A1153R:C 0 [Edges] 0 {A1120R:G -> A1121R:U: adjacent_5p upward } 0 1 {A1121R:U -> A1120R:G: adjacent_3p downward } 0 2 {A1120R:G -> A1153R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1153R:C -> A1120R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1121R:U -> A1122R:U: adjacent_5p upward } 0 5 {A1122R:U -> A1121R:U: adjacent_3p downward } 0 6 {A1121R:U -> A1152R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A1152R:A -> A1121R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A1122R:U -> A1123R:A: adjacent_5p upward } 0 9 {A1123R:A -> A1122R:U: adjacent_3p downward } 0 10 {A1122R:U -> A1151R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {A1151R:A -> A1122R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {A1123R:A -> A1150R:U: pairing antiparallel cis one_hbond Ww/Ws } 0 13 {A1150R:U -> A1123R:A: pairing antiparallel cis one_hbond Ws/Ww } 0 14 {A1150R:U -> A1151R:A: adjacent_5p } 0 15 {A1151R:A -> A1150R:U: adjacent_3p } 0 16 {A1151R:A -> A1152R:A: adjacent_5p upward } 0 17 {A1152R:A -> A1151R:A: adjacent_3p downward } 0 18 {A1152R:A -> A1153R:C: adjacent_5p upward } 0 19 {A1153R:C -> A1152R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1121R:U 0 1 A1122R:U 0 2 A1123R:A 0 3 A1124R:G 0 4 A1149R:C 0 5 A1150R:U 0 6 A1151R:A 0 7 A1152R:A 0 [Edges] 0 {A1121R:U -> A1122R:U: adjacent_5p upward } 0 1 {A1122R:U -> A1121R:U: adjacent_3p downward } 0 2 {A1121R:U -> A1152R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A1152R:A -> A1121R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A1122R:U -> A1123R:A: adjacent_5p upward } 0 5 {A1123R:A -> A1122R:U: adjacent_3p downward } 0 6 {A1122R:U -> A1151R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {A1151R:A -> A1122R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {A1123R:A -> A1124R:G: adjacent_5p } 0 9 {A1124R:G -> A1123R:A: adjacent_3p } 0 10 {A1123R:A -> A1150R:U: pairing antiparallel cis one_hbond Ww/Ws } 0 11 {A1150R:U -> A1123R:A: pairing antiparallel cis one_hbond Ws/Ww } 0 12 {A1124R:G -> A1149R:C: pairing antiparallel cis 128 Bs/Ww } 0 13 {A1149R:C -> A1124R:G: pairing antiparallel cis 128 Ww/Bs } 0 14 {A1149R:C -> A1150R:U: adjacent_5p upward } 0 15 {A1150R:U -> A1149R:C: adjacent_3p downward } 0 16 {A1150R:U -> A1151R:A: adjacent_5p } 0 17 {A1151R:A -> A1150R:U: adjacent_3p } 0 18 {A1151R:A -> A1152R:A: adjacent_5p upward } 0 19 {A1152R:A -> A1151R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1160R:G 0 1 A1161R:C 0 2 A1162R:C 0 3 A1163R:C 0 4 A1173R:G 0 5 A1174R:G 0 6 A1175R:G 0 7 A1176R:A 0 [Edges] 0 {A1160R:G -> A1161R:C: adjacent_5p upward } 0 1 {A1161R:C -> A1160R:G: adjacent_3p downward } 0 2 {A1160R:G -> A1176R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A1176R:A -> A1160R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A1161R:C -> A1162R:C: adjacent_5p upward } 0 5 {A1162R:C -> A1161R:C: adjacent_3p downward } 0 6 {A1161R:C -> A1175R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1175R:G -> A1161R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1162R:C -> A1163R:C: adjacent_5p } 0 9 {A1163R:C -> A1162R:C: adjacent_3p } 0 10 {A1162R:C -> A1174R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1174R:G -> A1162R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1163R:C -> A1173R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 13 {A1173R:G -> A1163R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 14 {A1173R:G -> A1174R:G: adjacent_5p upward } 0 15 {A1174R:G -> A1173R:G: adjacent_3p downward } 0 16 {A1174R:G -> A1175R:G: adjacent_5p upward } 0 17 {A1175R:G -> A1174R:G: adjacent_3p downward } 0 18 {A1175R:G -> A1176R:A: adjacent_5p upward } 0 19 {A1176R:A -> A1175R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1161R:C 0 1 A1162R:C 0 2 A1163R:C 0 3 A1164R:G 0 4 A1172R:C 0 5 A1173R:G 0 6 A1174R:G 0 7 A1175R:G 0 [Edges] 0 {A1161R:C -> A1162R:C: adjacent_5p upward } 0 1 {A1162R:C -> A1161R:C: adjacent_3p downward } 0 2 {A1161R:C -> A1175R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1175R:G -> A1161R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1162R:C -> A1163R:C: adjacent_5p } 0 5 {A1163R:C -> A1162R:C: adjacent_3p } 0 6 {A1162R:C -> A1174R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1174R:G -> A1162R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1163R:C -> A1164R:G: adjacent_5p upward } 0 9 {A1164R:G -> A1163R:C: adjacent_3p downward } 0 10 {A1163R:C -> A1173R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {A1173R:G -> A1163R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {A1164R:G -> A1172R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1172R:C -> A1164R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1164R:G -> A1173R:G: outward } 0 15 {A1173R:G -> A1164R:G: outward } 0 16 {A1172R:C -> A1173R:G: adjacent_5p upward } 0 17 {A1173R:G -> A1172R:C: adjacent_3p downward } 0 18 {A1173R:G -> A1174R:G: adjacent_5p upward } 0 19 {A1174R:G -> A1173R:G: adjacent_3p downward } 0 20 {A1174R:G -> A1175R:G: adjacent_5p upward } 0 21 {A1175R:G -> A1174R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1162R:C 0 1 A1163R:C 0 2 A1164R:G 0 3 A1165R:C 0 4 A1171R:G 0 5 A1172R:C 0 6 A1173R:G 0 7 A1174R:G 0 [Edges] 0 {A1162R:C -> A1163R:C: adjacent_5p } 0 1 {A1163R:C -> A1162R:C: adjacent_3p } 0 2 {A1162R:C -> A1174R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1174R:G -> A1162R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1163R:C -> A1164R:G: adjacent_5p upward } 0 5 {A1164R:G -> A1163R:C: adjacent_3p downward } 0 6 {A1163R:C -> A1173R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {A1173R:G -> A1163R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {A1164R:G -> A1165R:C: adjacent_5p upward } 0 9 {A1165R:C -> A1164R:G: adjacent_3p downward } 0 10 {A1164R:G -> A1172R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1172R:C -> A1164R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1164R:G -> A1173R:G: outward } 0 13 {A1173R:G -> A1164R:G: outward } 0 14 {A1165R:C -> A1171R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 15 {A1171R:G -> A1165R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 16 {A1171R:G -> A1172R:C: adjacent_5p upward } 0 17 {A1172R:C -> A1171R:G: adjacent_3p downward } 0 18 {A1172R:C -> A1173R:G: adjacent_5p upward } 0 19 {A1173R:G -> A1172R:C: adjacent_3p downward } 0 20 {A1173R:G -> A1174R:G: adjacent_5p upward } 0 21 {A1174R:G -> A1173R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1241R:G 0 1 A1242R:C 0 2 A1243R:C 0 3 A1244R:C 0 4 A1293R:G 0 5 A1294R:G 0 6 A1295R:G 0 7 A1296R:C 0 [Edges] 0 {A1241R:G -> A1242R:C: adjacent_5p upward } 0 1 {A1242R:C -> A1241R:G: adjacent_3p downward } 0 2 {A1241R:G -> A1296R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1296R:C -> A1241R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1242R:C -> A1243R:C: adjacent_5p } 0 5 {A1243R:C -> A1242R:C: adjacent_3p } 0 6 {A1242R:C -> A1295R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1295R:G -> A1242R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1243R:C -> A1244R:C: adjacent_5p upward } 0 9 {A1244R:C -> A1243R:C: adjacent_3p downward } 0 10 {A1243R:C -> A1294R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1294R:G -> A1243R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1244R:C -> A1293R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1293R:G -> A1244R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1293R:G -> A1294R:G: adjacent_5p upward } 0 15 {A1294R:G -> A1293R:G: adjacent_3p downward } 0 16 {A1294R:G -> A1295R:G: adjacent_5p upward } 0 17 {A1295R:G -> A1294R:G: adjacent_3p downward } 0 18 {A1295R:G -> A1296R:C: adjacent_5p upward } 0 19 {A1296R:C -> A1295R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1242R:C 0 1 A1243R:C 0 2 A1244R:C 0 3 A1245R:A 0 4 A1292R:U 0 5 A1293R:G 0 6 A1294R:G 0 7 A1295R:G 0 [Edges] 0 {A1242R:C -> A1243R:C: adjacent_5p } 0 1 {A1243R:C -> A1242R:C: adjacent_3p } 0 2 {A1242R:C -> A1295R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1295R:G -> A1242R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1243R:C -> A1244R:C: adjacent_5p upward } 0 5 {A1244R:C -> A1243R:C: adjacent_3p downward } 0 6 {A1243R:C -> A1294R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1294R:G -> A1243R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1244R:C -> A1245R:A: adjacent_5p upward } 0 9 {A1245R:A -> A1244R:C: adjacent_3p downward } 0 10 {A1244R:C -> A1293R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1293R:G -> A1244R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1245R:A -> A1292R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A1292R:U -> A1245R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A1245R:A -> A1293R:G: outward } 0 15 {A1293R:G -> A1245R:A: outward } 0 16 {A1292R:U -> A1293R:G: adjacent_5p upward } 0 17 {A1293R:G -> A1292R:U: adjacent_3p downward } 0 18 {A1293R:G -> A1294R:G: adjacent_5p upward } 0 19 {A1294R:G -> A1293R:G: adjacent_3p downward } 0 20 {A1294R:G -> A1295R:G: adjacent_5p upward } 0 21 {A1295R:G -> A1294R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1243R:C 0 1 A1244R:C 0 2 A1245R:A 0 3 A1246R:C 0 4 A1291R:G 0 5 A1292R:U 0 6 A1293R:G 0 7 A1294R:G 0 [Edges] 0 {A1243R:C -> A1244R:C: adjacent_5p upward } 0 1 {A1244R:C -> A1243R:C: adjacent_3p downward } 0 2 {A1243R:C -> A1294R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1294R:G -> A1243R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1244R:C -> A1245R:A: adjacent_5p upward } 0 5 {A1245R:A -> A1244R:C: adjacent_3p downward } 0 6 {A1244R:C -> A1293R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1293R:G -> A1244R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1245R:A -> A1246R:C: adjacent_5p upward } 0 9 {A1246R:C -> A1245R:A: adjacent_3p downward } 0 10 {A1245R:A -> A1292R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A1292R:U -> A1245R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A1245R:A -> A1293R:G: outward } 0 13 {A1293R:G -> A1245R:A: outward } 0 14 {A1246R:C -> A1291R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1291R:G -> A1246R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1291R:G -> A1292R:U: adjacent_5p upward } 0 17 {A1292R:U -> A1291R:G: adjacent_3p downward } 0 18 {A1292R:U -> A1293R:G: adjacent_5p upward } 0 19 {A1293R:G -> A1292R:U: adjacent_3p downward } 0 20 {A1293R:G -> A1294R:G: adjacent_5p upward } 0 21 {A1294R:G -> A1293R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1244R:C 0 1 A1245R:A 0 2 A1246R:C 0 3 A1247R:U 0 4 A1290R:G 0 5 A1291R:G 0 6 A1292R:U 0 7 A1293R:G 0 [Edges] 0 {A1244R:C -> A1245R:A: adjacent_5p upward } 0 1 {A1245R:A -> A1244R:C: adjacent_3p downward } 0 2 {A1244R:C -> A1293R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1293R:G -> A1244R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1245R:A -> A1246R:C: adjacent_5p upward } 0 5 {A1246R:C -> A1245R:A: adjacent_3p downward } 0 6 {A1245R:A -> A1292R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A1292R:U -> A1245R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A1245R:A -> A1293R:G: outward } 0 9 {A1293R:G -> A1245R:A: outward } 0 10 {A1246R:C -> A1247R:U: adjacent_5p upward } 0 11 {A1247R:U -> A1246R:C: adjacent_3p downward } 0 12 {A1246R:C -> A1291R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1291R:G -> A1246R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1247R:U -> A1290R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A1290R:G -> A1247R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A1290R:G -> A1291R:G: adjacent_5p upward } 0 17 {A1291R:G -> A1290R:G: adjacent_3p downward } 0 18 {A1291R:G -> A1292R:U: adjacent_5p upward } 0 19 {A1292R:U -> A1291R:G: adjacent_3p downward } 0 20 {A1292R:U -> A1293R:G: adjacent_5p upward } 0 21 {A1293R:G -> A1292R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A1245R:A 0 1 A1246R:C 0 2 A1247R:U 0 3 A1248R:A 0 4 A1289R:A 0 5 A1290R:G 0 6 A1291R:G 0 7 A1292R:U 0 [Edges] 0 {A1245R:A -> A1246R:C: adjacent_5p upward } 0 1 {A1246R:C -> A1245R:A: adjacent_3p downward } 0 2 {A1245R:A -> A1292R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A1292R:U -> A1245R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A1246R:C -> A1247R:U: adjacent_5p upward } 0 5 {A1247R:U -> A1246R:C: adjacent_3p downward } 0 6 {A1246R:C -> A1291R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1291R:G -> A1246R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1247R:U -> A1248R:A: adjacent_5p } 0 9 {A1248R:A -> A1247R:U: adjacent_3p } 0 10 {A1247R:U -> A1290R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A1290R:G -> A1247R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A1248R:A -> A1289R:A: pairing antiparallel trans one_hbond Ww/Hw } 0 13 {A1289R:A -> A1248R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 14 {A1248R:A -> A1290R:G: outward } 0 15 {A1290R:G -> A1248R:A: outward } 0 16 {A1289R:A -> A1290R:G: adjacent_5p } 0 17 {A1290R:G -> A1289R:A: adjacent_3p } 0 18 {A1290R:G -> A1291R:G: adjacent_5p upward } 0 19 {A1291R:G -> A1290R:G: adjacent_3p downward } 0 20 {A1291R:G -> A1292R:U: adjacent_5p upward } 0 21 {A1292R:U -> A1291R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1246R:C 0 1 A1247R:U 0 2 A1248R:A 0 3 A1249R:C 0 4 A1288R:A 0 5 A1289R:A 0 6 A1290R:G 0 7 A1291R:G 0 [Edges] 0 {A1246R:C -> A1247R:U: adjacent_5p upward } 0 1 {A1247R:U -> A1246R:C: adjacent_3p downward } 0 2 {A1246R:C -> A1291R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1291R:G -> A1246R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1247R:U -> A1248R:A: adjacent_5p } 0 5 {A1248R:A -> A1247R:U: adjacent_3p } 0 6 {A1247R:U -> A1290R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A1290R:G -> A1247R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A1248R:A -> A1249R:C: adjacent_5p upward } 0 9 {A1249R:C -> A1248R:A: adjacent_3p downward } 0 10 {A1248R:A -> A1289R:A: pairing antiparallel trans one_hbond Ww/Hw } 0 11 {A1289R:A -> A1248R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 12 {A1248R:A -> A1290R:G: outward } 0 13 {A1290R:G -> A1248R:A: outward } 0 14 {A1249R:C -> A1288R:A: pairing antiparallel trans XXV Ww/Hh } 0 15 {A1288R:A -> A1249R:C: pairing antiparallel trans XXV Hh/Ww } 0 16 {A1288R:A -> A1289R:A: adjacent_5p upward } 0 17 {A1289R:A -> A1288R:A: adjacent_3p downward } 0 18 {A1289R:A -> A1290R:G: adjacent_5p } 0 19 {A1290R:G -> A1289R:A: adjacent_3p } 0 20 {A1290R:G -> A1291R:G: adjacent_5p upward } 0 21 {A1291R:G -> A1290R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1249R:C 0 1 A1250R:A 0 2 A1251R:A 0 3 A1252R:A 0 4 A1285R:A 0 5 A1286R:A 0 6 A1287R:A 0 7 A1288R:A 0 [Edges] 0 {A1249R:C -> A1250R:A: adjacent_5p } 0 1 {A1250R:A -> A1249R:C: adjacent_3p } 0 2 {A1249R:C -> A1288R:A: pairing antiparallel trans XXV Ww/Hh } 0 3 {A1288R:A -> A1249R:C: pairing antiparallel trans XXV Hh/Ww } 0 4 {A1250R:A -> A1251R:A: adjacent_5p upward } 0 5 {A1251R:A -> A1250R:A: adjacent_3p downward } 0 6 {A1250R:A -> A1287R:A: outward } 0 7 {A1287R:A -> A1250R:A: outward } 0 8 {A1251R:A -> A1252R:A: adjacent_5p upward } 0 9 {A1252R:A -> A1251R:A: adjacent_3p downward } 0 10 {A1252R:A -> A1285R:A: pairing parallel cis one_hbond Wh/Ww } 0 11 {A1285R:A -> A1252R:A: pairing parallel cis one_hbond Ww/Wh } 0 12 {A1285R:A -> A1286R:A: adjacent_5p } 0 13 {A1286R:A -> A1285R:A: adjacent_3p } 0 14 {A1286R:A -> A1287R:A: adjacent_5p } 0 15 {A1287R:A -> A1286R:A: adjacent_3p } 0 16 {A1287R:A -> A1288R:A: adjacent_5p upward } 0 17 {A1288R:A -> A1287R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A1252R:A 0 1 A1253R:G 0 2 A1254R:C 0 3 A1255R:G 0 4 A1282R:C 0 5 A1283R:G 0 6 A1284R:C 0 7 A1285R:A 0 [Edges] 0 {A1252R:A -> A1253R:G: adjacent_5p upward } 0 1 {A1253R:G -> A1252R:A: adjacent_3p downward } 0 2 {A1252R:A -> A1285R:A: pairing parallel cis one_hbond Wh/Ww } 0 3 {A1285R:A -> A1252R:A: pairing parallel cis one_hbond Ww/Wh } 0 4 {A1253R:G -> A1254R:C: adjacent_5p upward } 0 5 {A1254R:C -> A1253R:G: adjacent_3p downward } 0 6 {A1253R:G -> A1284R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1284R:C -> A1253R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1254R:C -> A1255R:G: adjacent_5p } 0 9 {A1255R:G -> A1254R:C: adjacent_3p } 0 10 {A1254R:C -> A1283R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1283R:G -> A1254R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1255R:G -> A1282R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1282R:C -> A1255R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1255R:G -> A1283R:G: outward } 0 15 {A1283R:G -> A1255R:G: outward } 0 16 {A1282R:C -> A1283R:G: adjacent_5p upward } 0 17 {A1283R:G -> A1282R:C: adjacent_3p downward } 0 18 {A1283R:G -> A1284R:C: adjacent_5p upward } 0 19 {A1284R:C -> A1283R:G: adjacent_3p downward } 0 20 {A1284R:C -> A1285R:A: adjacent_5p inward } 0 21 {A1285R:A -> A1284R:C: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1258R:G 0 1 A1259R:C 0 2 A1260R:C 0 3 A1261R:A 0 4 A1274R:G 0 5 A1275R:A 0 6 A1276R:G 0 7 A1277R:C 0 [Edges] 0 {A1258R:G -> A1259R:C: adjacent_5p upward } 0 1 {A1259R:C -> A1258R:G: adjacent_3p downward } 0 2 {A1258R:G -> A1277R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1277R:C -> A1258R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1259R:C -> A1260R:C: adjacent_5p } 0 5 {A1260R:C -> A1259R:C: adjacent_3p } 0 6 {A1259R:C -> A1276R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1276R:G -> A1259R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1260R:C -> A1261R:A: adjacent_5p } 0 9 {A1261R:A -> A1260R:C: adjacent_3p } 0 10 {A1261R:A -> A1274R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {A1274R:G -> A1261R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {A1261R:A -> A1275R:A: outward } 0 13 {A1275R:A -> A1261R:A: outward } 0 14 {A1274R:G -> A1275R:A: adjacent_5p } 0 15 {A1275R:A -> A1274R:G: adjacent_3p } 0 16 {A1275R:A -> A1276R:G: adjacent_5p upward } 0 17 {A1276R:G -> A1275R:A: adjacent_3p downward } 0 18 {A1276R:G -> A1277R:C: adjacent_5p upward } 0 19 {A1277R:C -> A1276R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 12 . . 4 . . . 11 . 14 . . 5 . . . 13 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1259R:C 0 1 A1260R:C 0 2 A1261R:A 0 3 A1262R:C 0 4 A1273R:G 0 5 A1274R:G 0 6 A1275R:A 0 7 A1276R:G 0 [Edges] 0 {A1259R:C -> A1260R:C: adjacent_5p } 0 1 {A1260R:C -> A1259R:C: adjacent_3p } 0 2 {A1259R:C -> A1276R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1276R:G -> A1259R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1260R:C -> A1261R:A: adjacent_5p } 0 5 {A1261R:A -> A1260R:C: adjacent_3p } 0 6 {A1261R:A -> A1262R:C: adjacent_5p upward } 0 7 {A1262R:C -> A1261R:A: adjacent_3p downward } 0 8 {A1261R:A -> A1274R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {A1274R:G -> A1261R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {A1261R:A -> A1275R:A: outward } 0 11 {A1275R:A -> A1261R:A: outward } 0 12 {A1262R:C -> A1273R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1273R:G -> A1262R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1273R:G -> A1274R:G: adjacent_5p upward } 0 15 {A1274R:G -> A1273R:G: adjacent_3p downward } 0 16 {A1274R:G -> A1275R:A: adjacent_5p } 0 17 {A1275R:A -> A1274R:G: adjacent_3p } 0 18 {A1275R:A -> A1276R:G: adjacent_5p upward } 0 19 {A1276R:G -> A1275R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 10 . 3 . . 7 . 12 . . . 4 . . . 13 . 14 . . 5 . . 9 . 15 . 16 . 6 . . 11 . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1261R:A 0 1 A1262R:C 0 2 A1263R:C 0 3 A1264R:C 0 4 A1271R:G 0 5 A1272R:G 0 6 A1273R:G 0 7 A1274R:G 0 [Edges] 0 {A1261R:A -> A1262R:C: adjacent_5p upward } 0 1 {A1262R:C -> A1261R:A: adjacent_3p downward } 0 2 {A1261R:A -> A1274R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A1274R:G -> A1261R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A1262R:C -> A1263R:C: adjacent_5p } 0 5 {A1263R:C -> A1262R:C: adjacent_3p } 0 6 {A1262R:C -> A1273R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1273R:G -> A1262R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1263R:C -> A1264R:C: adjacent_5p upward } 0 9 {A1264R:C -> A1263R:C: adjacent_3p downward } 0 10 {A1263R:C -> A1272R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1272R:G -> A1263R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1264R:C -> A1271R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1271R:G -> A1264R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1271R:G -> A1272R:G: adjacent_5p upward } 0 15 {A1272R:G -> A1271R:G: adjacent_3p downward } 0 16 {A1272R:G -> A1273R:G: adjacent_5p upward } 0 17 {A1273R:G -> A1272R:G: adjacent_3p downward } 0 18 {A1273R:G -> A1274R:G: adjacent_5p upward } 0 19 {A1274R:G -> A1273R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1262R:C 0 1 A1263R:C 0 2 A1264R:C 0 3 A1265R:G 0 4 A1270R:C 0 5 A1271R:G 0 6 A1272R:G 0 7 A1273R:G 0 [Edges] 0 {A1262R:C -> A1263R:C: adjacent_5p } 0 1 {A1263R:C -> A1262R:C: adjacent_3p } 0 2 {A1262R:C -> A1273R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1273R:G -> A1262R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1263R:C -> A1264R:C: adjacent_5p upward } 0 5 {A1264R:C -> A1263R:C: adjacent_3p downward } 0 6 {A1263R:C -> A1272R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1272R:G -> A1263R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1264R:C -> A1265R:G: adjacent_5p upward } 0 9 {A1265R:G -> A1264R:C: adjacent_3p downward } 0 10 {A1264R:C -> A1271R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1271R:G -> A1264R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1265R:G -> A1270R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1270R:C -> A1265R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1265R:G -> A1271R:G: outward } 0 15 {A1271R:G -> A1265R:G: outward } 0 16 {A1270R:C -> A1271R:G: adjacent_5p upward } 0 17 {A1271R:G -> A1270R:C: adjacent_3p downward } 0 18 {A1271R:G -> A1272R:G: adjacent_5p upward } 0 19 {A1272R:G -> A1271R:G: adjacent_3p downward } 0 20 {A1272R:G -> A1273R:G: adjacent_5p upward } 0 21 {A1273R:G -> A1272R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1303R:C 0 1 A1304R:G 0 2 A1305R:G 0 3 A1306R:A 0 4 A1331R:G 0 5 A1332R:A 0 6 A1333R:A 0 7 A1334R:G 0 [Edges] 0 {A1303R:C -> A1304R:G: adjacent_5p upward } 0 1 {A1304R:G -> A1303R:C: adjacent_3p downward } 0 2 {A1303R:C -> A1334R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1334R:G -> A1303R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1304R:G -> A1305R:G: adjacent_5p upward } 0 5 {A1305R:G -> A1304R:G: adjacent_3p downward } 0 6 {A1304R:G -> A1333R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {A1333R:A -> A1304R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {A1305R:G -> A1306R:A: adjacent_5p } 0 9 {A1306R:A -> A1305R:G: adjacent_3p } 0 10 {A1305R:G -> A1331R:G: inward } 0 11 {A1331R:G -> A1305R:G: inward } 0 12 {A1306R:A -> A1331R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {A1331R:G -> A1306R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {A1306R:A -> A1332R:A: outward } 0 15 {A1332R:A -> A1306R:A: outward } 0 16 {A1331R:G -> A1332R:A: adjacent_5p } 0 17 {A1332R:A -> A1331R:G: adjacent_3p } 0 18 {A1332R:A -> A1333R:A: adjacent_5p upward } 0 19 {A1333R:A -> A1332R:A: adjacent_3p downward } 0 20 {A1333R:A -> A1334R:G: adjacent_5p upward } 0 21 {A1334R:G -> A1333R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 . . . 3 . . 9 . 12 14 . . 4 . . 11 13 . 16 . . 5 . . . 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1304R:G 0 1 A1305R:G 0 2 A1306R:A 0 3 A1307R:U 0 4 A1330R:U 0 5 A1331R:G 0 6 A1332R:A 0 7 A1333R:A 0 [Edges] 0 {A1304R:G -> A1305R:G: adjacent_5p upward } 0 1 {A1305R:G -> A1304R:G: adjacent_3p downward } 0 2 {A1304R:G -> A1333R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {A1333R:A -> A1304R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {A1305R:G -> A1306R:A: adjacent_5p } 0 5 {A1306R:A -> A1305R:G: adjacent_3p } 0 6 {A1305R:G -> A1331R:G: inward } 0 7 {A1331R:G -> A1305R:G: inward } 0 8 {A1306R:A -> A1307R:U: adjacent_5p upward } 0 9 {A1307R:U -> A1306R:A: adjacent_3p downward } 0 10 {A1306R:A -> A1331R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {A1331R:G -> A1306R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {A1306R:A -> A1332R:A: outward } 0 13 {A1332R:A -> A1306R:A: outward } 0 14 {A1307R:U -> A1330R:U: pairing antiparallel cis XVI Ww/Ws } 0 15 {A1330R:U -> A1307R:U: pairing antiparallel cis XVI Ws/Ww } 0 16 {A1330R:U -> A1331R:G: adjacent_5p upward } 0 17 {A1331R:G -> A1330R:U: adjacent_3p downward } 0 18 {A1331R:G -> A1332R:A: adjacent_5p } 0 19 {A1332R:A -> A1331R:G: adjacent_3p } 0 20 {A1332R:A -> A1333R:A: adjacent_5p upward } 0 21 {A1333R:A -> A1332R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 . . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . 7 11 . 17 . 18 . 6 . . 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1306R:A 0 1 A1307R:U 0 2 A1308R:U 0 3 A1309R:G 0 4 A1328R:C 0 5 A1329R:A 0 6 A1330R:U 0 7 A1331R:G 0 [Edges] 0 {A1306R:A -> A1307R:U: adjacent_5p upward } 0 1 {A1307R:U -> A1306R:A: adjacent_3p downward } 0 2 {A1306R:A -> A1331R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A1331R:G -> A1306R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A1307R:U -> A1308R:U: adjacent_5p upward } 0 5 {A1308R:U -> A1307R:U: adjacent_3p downward } 0 6 {A1307R:U -> A1330R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {A1330R:U -> A1307R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {A1308R:U -> A1309R:G: adjacent_5p } 0 9 {A1309R:G -> A1308R:U: adjacent_3p } 0 10 {A1308R:U -> A1329R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A1329R:A -> A1308R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A1309R:G -> A1328R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1328R:C -> A1309R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1309R:G -> A1329R:A: outward } 0 15 {A1329R:A -> A1309R:G: outward } 0 16 {A1328R:C -> A1329R:A: adjacent_5p upward } 0 17 {A1329R:A -> A1328R:C: adjacent_3p downward } 0 18 {A1329R:A -> A1330R:U: adjacent_5p upward } 0 19 {A1330R:U -> A1329R:A: adjacent_3p downward } 0 20 {A1330R:U -> A1331R:G: adjacent_5p upward } 0 21 {A1331R:G -> A1330R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1307R:U 0 1 A1308R:U 0 2 A1309R:G 0 3 A1310R:G 0 4 A1327R:C 0 5 A1328R:C 0 6 A1329R:A 0 7 A1330R:U 0 [Edges] 0 {A1307R:U -> A1308R:U: adjacent_5p upward } 0 1 {A1308R:U -> A1307R:U: adjacent_3p downward } 0 2 {A1307R:U -> A1330R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {A1330R:U -> A1307R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {A1308R:U -> A1309R:G: adjacent_5p } 0 5 {A1309R:G -> A1308R:U: adjacent_3p } 0 6 {A1308R:U -> A1329R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A1329R:A -> A1308R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A1309R:G -> A1310R:G: adjacent_5p upward } 0 9 {A1310R:G -> A1309R:G: adjacent_3p downward } 0 10 {A1309R:G -> A1328R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1328R:C -> A1309R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1309R:G -> A1329R:A: outward } 0 13 {A1329R:A -> A1309R:G: outward } 0 14 {A1310R:G -> A1327R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1327R:C -> A1310R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1327R:C -> A1328R:C: adjacent_5p upward } 0 17 {A1328R:C -> A1327R:C: adjacent_3p downward } 0 18 {A1328R:C -> A1329R:A: adjacent_5p upward } 0 19 {A1329R:A -> A1328R:C: adjacent_3p downward } 0 20 {A1329R:A -> A1330R:U: adjacent_5p upward } 0 21 {A1330R:U -> A1329R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1308R:U 0 1 A1309R:G 0 2 A1310R:G 0 3 A1311R:G 0 4 A1326R:C 0 5 A1327R:C 0 6 A1328R:C 0 7 A1329R:A 0 [Edges] 0 {A1308R:U -> A1309R:G: adjacent_5p } 0 1 {A1309R:G -> A1308R:U: adjacent_3p } 0 2 {A1308R:U -> A1329R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A1329R:A -> A1308R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A1309R:G -> A1310R:G: adjacent_5p upward } 0 5 {A1310R:G -> A1309R:G: adjacent_3p downward } 0 6 {A1309R:G -> A1328R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1328R:C -> A1309R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1309R:G -> A1329R:A: outward } 0 9 {A1329R:A -> A1309R:G: outward } 0 10 {A1310R:G -> A1311R:G: adjacent_5p upward } 0 11 {A1311R:G -> A1310R:G: adjacent_3p downward } 0 12 {A1310R:G -> A1327R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1327R:C -> A1310R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1311R:G -> A1326R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1326R:C -> A1311R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1326R:C -> A1327R:C: adjacent_5p upward } 0 17 {A1327R:C -> A1326R:C: adjacent_3p downward } 0 18 {A1327R:C -> A1328R:C: adjacent_5p upward } 0 19 {A1328R:C -> A1327R:C: adjacent_3p downward } 0 20 {A1328R:C -> A1329R:A: adjacent_5p upward } 0 21 {A1329R:A -> A1328R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A1309R:G 0 1 A1310R:G 0 2 A1311R:G 0 3 A1312R:G 0 4 A1325R:C 0 5 A1326R:C 0 6 A1327R:C 0 7 A1328R:C 0 [Edges] 0 {A1309R:G -> A1310R:G: adjacent_5p upward } 0 1 {A1310R:G -> A1309R:G: adjacent_3p downward } 0 2 {A1309R:G -> A1328R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1328R:C -> A1309R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1310R:G -> A1311R:G: adjacent_5p upward } 0 5 {A1311R:G -> A1310R:G: adjacent_3p downward } 0 6 {A1310R:G -> A1327R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1327R:C -> A1310R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1311R:G -> A1312R:G: adjacent_5p upward } 0 9 {A1312R:G -> A1311R:G: adjacent_3p downward } 0 10 {A1311R:G -> A1326R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1326R:C -> A1311R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1312R:G -> A1325R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1325R:C -> A1312R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1325R:C -> A1326R:C: adjacent_5p } 0 15 {A1326R:C -> A1325R:C: adjacent_3p } 0 16 {A1326R:C -> A1327R:C: adjacent_5p upward } 0 17 {A1327R:C -> A1326R:C: adjacent_3p downward } 0 18 {A1327R:C -> A1328R:C: adjacent_5p upward } 0 19 {A1328R:C -> A1327R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1310R:G 0 1 A1311R:G 0 2 A1312R:G 0 3 A1313R:U 0 4 A1324R:A 0 5 A1325R:C 0 6 A1326R:C 0 7 A1327R:C 0 [Edges] 0 {A1310R:G -> A1311R:G: adjacent_5p upward } 0 1 {A1311R:G -> A1310R:G: adjacent_3p downward } 0 2 {A1310R:G -> A1327R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1327R:C -> A1310R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1311R:G -> A1312R:G: adjacent_5p upward } 0 5 {A1312R:G -> A1311R:G: adjacent_3p downward } 0 6 {A1311R:G -> A1326R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1326R:C -> A1311R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1312R:G -> A1313R:U: adjacent_5p upward } 0 9 {A1313R:U -> A1312R:G: adjacent_3p downward } 0 10 {A1312R:G -> A1325R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1325R:C -> A1312R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1313R:U -> A1324R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A1324R:A -> A1313R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A1324R:A -> A1325R:C: adjacent_5p upward } 0 15 {A1325R:C -> A1324R:A: adjacent_3p downward } 0 16 {A1325R:C -> A1326R:C: adjacent_5p } 0 17 {A1326R:C -> A1325R:C: adjacent_3p } 0 18 {A1326R:C -> A1327R:C: adjacent_5p upward } 0 19 {A1327R:C -> A1326R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1311R:G 0 1 A1312R:G 0 2 A1313R:U 0 3 A1314R:C 0 4 A1323R:G 0 5 A1324R:A 0 6 A1325R:C 0 7 A1326R:C 0 [Edges] 0 {A1311R:G -> A1312R:G: adjacent_5p upward } 0 1 {A1312R:G -> A1311R:G: adjacent_3p downward } 0 2 {A1311R:G -> A1326R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1326R:C -> A1311R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1312R:G -> A1313R:U: adjacent_5p upward } 0 5 {A1313R:U -> A1312R:G: adjacent_3p downward } 0 6 {A1312R:G -> A1325R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1325R:C -> A1312R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1313R:U -> A1314R:C: adjacent_5p upward } 0 9 {A1314R:C -> A1313R:U: adjacent_3p downward } 0 10 {A1313R:U -> A1324R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A1324R:A -> A1313R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A1314R:C -> A1323R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1323R:G -> A1314R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1323R:G -> A1324R:A: adjacent_5p upward } 0 15 {A1324R:A -> A1323R:G: adjacent_3p downward } 0 16 {A1324R:A -> A1325R:C: adjacent_5p upward } 0 17 {A1325R:C -> A1324R:A: adjacent_3p downward } 0 18 {A1325R:C -> A1326R:C: adjacent_5p } 0 19 {A1326R:C -> A1325R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1348R:U 0 1 A1349R:A 0 2 A1350R:A 0 3 A1351R:U 0 4 A1371R:G 0 5 A1372R:U 0 6 A1373R:G 0 7 A1374R:A 0 [Edges] 0 {A1348R:U -> A1349R:A: adjacent_5p upward } 0 1 {A1349R:A -> A1348R:U: adjacent_3p downward } 0 2 {A1348R:U -> A1374R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {A1374R:A -> A1348R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {A1349R:A -> A1350R:A: adjacent_5p upward } 0 5 {A1350R:A -> A1349R:A: adjacent_3p downward } 0 6 {A1349R:A -> A1373R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {A1373R:G -> A1349R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {A1349R:A -> A1374R:A: outward } 0 9 {A1374R:A -> A1349R:A: outward } 0 10 {A1350R:A -> A1351R:U: adjacent_5p upward } 0 11 {A1351R:U -> A1350R:A: adjacent_3p downward } 0 12 {A1350R:A -> A1372R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A1372R:U -> A1350R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A1351R:U -> A1371R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A1371R:G -> A1351R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A1371R:G -> A1372R:U: adjacent_5p upward } 0 17 {A1372R:U -> A1371R:G: adjacent_3p downward } 0 18 {A1372R:U -> A1373R:G: adjacent_5p upward } 0 19 {A1373R:G -> A1372R:U: adjacent_3p downward } 0 20 {A1373R:G -> A1374R:A: adjacent_5p } 0 21 {A1374R:A -> A1373R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A1349R:A 0 1 A1350R:A 0 2 A1351R:U 0 3 A1352R:C 0 4 A1370R:G 0 5 A1371R:G 0 6 A1372R:U 0 7 A1373R:G 0 [Edges] 0 {A1349R:A -> A1350R:A: adjacent_5p upward } 0 1 {A1350R:A -> A1349R:A: adjacent_3p downward } 0 2 {A1349R:A -> A1373R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A1373R:G -> A1349R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A1350R:A -> A1351R:U: adjacent_5p upward } 0 5 {A1351R:U -> A1350R:A: adjacent_3p downward } 0 6 {A1350R:A -> A1372R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A1372R:U -> A1350R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A1351R:U -> A1352R:C: adjacent_5p } 0 9 {A1352R:C -> A1351R:U: adjacent_3p } 0 10 {A1351R:U -> A1371R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A1371R:G -> A1351R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A1352R:C -> A1370R:G: pairing antiparallel cis Ww/Ww } 0 13 {A1370R:G -> A1352R:C: pairing antiparallel cis Ww/Ww } 0 14 {A1370R:G -> A1371R:G: adjacent_5p upward } 0 15 {A1371R:G -> A1370R:G: adjacent_3p downward } 0 16 {A1371R:G -> A1372R:U: adjacent_5p upward } 0 17 {A1372R:U -> A1371R:G: adjacent_3p downward } 0 18 {A1372R:U -> A1373R:G: adjacent_5p upward } 0 19 {A1373R:G -> A1372R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1350R:A 0 1 A1351R:U 0 2 A1352R:C 0 3 A1353R:G 0 4 A1369R:C 0 5 A1370R:G 0 6 A1371R:G 0 7 A1372R:U 0 [Edges] 0 {A1350R:A -> A1351R:U: adjacent_5p upward } 0 1 {A1351R:U -> A1350R:A: adjacent_3p downward } 0 2 {A1350R:A -> A1372R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A1372R:U -> A1350R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A1351R:U -> A1352R:C: adjacent_5p } 0 5 {A1352R:C -> A1351R:U: adjacent_3p } 0 6 {A1351R:U -> A1371R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A1371R:G -> A1351R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A1352R:C -> A1353R:G: adjacent_5p upward } 0 9 {A1353R:G -> A1352R:C: adjacent_3p downward } 0 10 {A1352R:C -> A1370R:G: pairing antiparallel cis Ww/Ww } 0 11 {A1370R:G -> A1352R:C: pairing antiparallel cis Ww/Ww } 0 12 {A1353R:G -> A1369R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1369R:C -> A1353R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1369R:C -> A1370R:G: adjacent_5p upward } 0 15 {A1370R:G -> A1369R:C: adjacent_3p downward } 0 16 {A1370R:G -> A1371R:G: adjacent_5p upward } 0 17 {A1371R:G -> A1370R:G: adjacent_3p downward } 0 18 {A1371R:G -> A1372R:U: adjacent_5p upward } 0 19 {A1372R:U -> A1371R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1351R:U 0 1 A1352R:C 0 2 A1353R:G 0 3 A1354R:C 0 4 A1368R:G 0 5 A1369R:C 0 6 A1370R:G 0 7 A1371R:G 0 [Edges] 0 {A1351R:U -> A1352R:C: adjacent_5p } 0 1 {A1352R:C -> A1351R:U: adjacent_3p } 0 2 {A1351R:U -> A1371R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A1371R:G -> A1351R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A1352R:C -> A1353R:G: adjacent_5p upward } 0 5 {A1353R:G -> A1352R:C: adjacent_3p downward } 0 6 {A1352R:C -> A1370R:G: pairing antiparallel cis Ww/Ww } 0 7 {A1370R:G -> A1352R:C: pairing antiparallel cis Ww/Ww } 0 8 {A1353R:G -> A1354R:C: adjacent_5p upward } 0 9 {A1354R:C -> A1353R:G: adjacent_3p downward } 0 10 {A1353R:G -> A1369R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1369R:C -> A1353R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1354R:C -> A1368R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1368R:G -> A1354R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1368R:G -> A1369R:C: adjacent_5p upward } 0 15 {A1369R:C -> A1368R:G: adjacent_3p downward } 0 16 {A1369R:C -> A1370R:G: adjacent_5p upward } 0 17 {A1370R:G -> A1369R:C: adjacent_3p downward } 0 18 {A1370R:G -> A1371R:G: adjacent_5p upward } 0 19 {A1371R:G -> A1370R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1352R:C 0 1 A1353R:G 0 2 A1354R:C 0 3 A1355R:G 0 4 A1367R:C 0 5 A1368R:G 0 6 A1369R:C 0 7 A1370R:G 0 [Edges] 0 {A1352R:C -> A1353R:G: adjacent_5p upward } 0 1 {A1353R:G -> A1352R:C: adjacent_3p downward } 0 2 {A1352R:C -> A1370R:G: pairing antiparallel cis Ww/Ww } 0 3 {A1370R:G -> A1352R:C: pairing antiparallel cis Ww/Ww } 0 4 {A1353R:G -> A1354R:C: adjacent_5p upward } 0 5 {A1354R:C -> A1353R:G: adjacent_3p downward } 0 6 {A1353R:G -> A1369R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1369R:C -> A1353R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1354R:C -> A1355R:G: adjacent_5p } 0 9 {A1355R:G -> A1354R:C: adjacent_3p } 0 10 {A1354R:C -> A1368R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1368R:G -> A1354R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1355R:G -> A1367R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1367R:C -> A1355R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1355R:G -> A1368R:G: outward } 0 15 {A1368R:G -> A1355R:G: outward } 0 16 {A1367R:C -> A1368R:G: adjacent_5p } 0 17 {A1368R:G -> A1367R:C: adjacent_3p } 0 18 {A1368R:G -> A1369R:C: adjacent_5p upward } 0 19 {A1369R:C -> A1368R:G: adjacent_3p downward } 0 20 {A1369R:C -> A1370R:G: adjacent_5p upward } 0 21 {A1370R:G -> A1369R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1353R:G 0 1 A1354R:C 0 2 A1355R:G 0 3 A1356R:G 0 4 A1366R:C 0 5 A1367R:C 0 6 A1368R:G 0 7 A1369R:C 0 [Edges] 0 {A1353R:G -> A1354R:C: adjacent_5p upward } 0 1 {A1354R:C -> A1353R:G: adjacent_3p downward } 0 2 {A1353R:G -> A1369R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1369R:C -> A1353R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1354R:C -> A1355R:G: adjacent_5p } 0 5 {A1355R:G -> A1354R:C: adjacent_3p } 0 6 {A1354R:C -> A1368R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1368R:G -> A1354R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1355R:G -> A1356R:G: adjacent_5p upward } 0 9 {A1356R:G -> A1355R:G: adjacent_3p downward } 0 10 {A1355R:G -> A1367R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1367R:C -> A1355R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1355R:G -> A1368R:G: outward } 0 13 {A1368R:G -> A1355R:G: outward } 0 14 {A1356R:G -> A1366R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1366R:C -> A1356R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1366R:C -> A1367R:C: adjacent_5p upward } 0 17 {A1367R:C -> A1366R:C: adjacent_3p downward } 0 18 {A1367R:C -> A1368R:G: adjacent_5p } 0 19 {A1368R:G -> A1367R:C: adjacent_3p } 0 20 {A1368R:G -> A1369R:C: adjacent_5p upward } 0 21 {A1369R:C -> A1368R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1354R:C 0 1 A1355R:G 0 2 A1356R:G 0 3 A1357R:A 0 4 A1365R:G 0 5 A1366R:C 0 6 A1367R:C 0 7 A1368R:G 0 [Edges] 0 {A1354R:C -> A1355R:G: adjacent_5p } 0 1 {A1355R:G -> A1354R:C: adjacent_3p } 0 2 {A1354R:C -> A1368R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1368R:G -> A1354R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1355R:G -> A1356R:G: adjacent_5p upward } 0 5 {A1356R:G -> A1355R:G: adjacent_3p downward } 0 6 {A1355R:G -> A1367R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1367R:C -> A1355R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1355R:G -> A1368R:G: outward } 0 9 {A1368R:G -> A1355R:G: outward } 0 10 {A1356R:G -> A1357R:A: adjacent_5p upward } 0 11 {A1357R:A -> A1356R:G: adjacent_3p downward } 0 12 {A1356R:G -> A1366R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1366R:C -> A1356R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1357R:A -> A1365R:G: pairing antiparallel cis VIII Ww/Ww } 0 15 {A1365R:G -> A1357R:A: pairing antiparallel cis VIII Ww/Ww } 0 16 {A1365R:G -> A1366R:C: adjacent_5p upward } 0 17 {A1366R:C -> A1365R:G: adjacent_3p downward } 0 18 {A1366R:C -> A1367R:C: adjacent_5p upward } 0 19 {A1367R:C -> A1366R:C: adjacent_3p downward } 0 20 {A1367R:C -> A1368R:G: adjacent_5p } 0 21 {A1368R:G -> A1367R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A1404R:C 0 1 A1405R:G 0 2 A1406R:U 0 3 A1407R:C 0 4 A1494R:G 0 5 A1495R:U 0 6 A1496R:C 0 7 A1497R:G 0 [Edges] 0 {A1404R:C -> A1405R:G: adjacent_5p upward } 0 1 {A1405R:G -> A1404R:C: adjacent_3p downward } 0 2 {A1404R:C -> A1497R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1497R:G -> A1404R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1405R:G -> A1406R:U: adjacent_5p upward } 0 5 {A1406R:U -> A1405R:G: adjacent_3p downward } 0 6 {A1405R:G -> A1496R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1496R:C -> A1405R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1406R:U -> A1407R:C: adjacent_5p upward } 0 9 {A1407R:C -> A1406R:U: adjacent_3p downward } 0 10 {A1406R:U -> A1495R:U: pairing antiparallel cis one_hbond Wh/Ww } 0 11 {A1495R:U -> A1406R:U: pairing antiparallel cis one_hbond Ww/Wh } 0 12 {A1407R:C -> A1494R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1494R:G -> A1407R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1494R:G -> A1495R:U: adjacent_5p upward } 0 15 {A1495R:U -> A1494R:G: adjacent_3p downward } 0 16 {A1495R:U -> A1496R:C: adjacent_5p } 0 17 {A1496R:C -> A1495R:U: adjacent_3p } 0 18 {A1496R:C -> A1497R:G: adjacent_5p upward } 0 19 {A1497R:G -> A1496R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1409R:C 0 1 A1410R:G 0 2 A1411R:C 0 3 A1412R:C 0 4 A1488R:G 0 5 A1489R:G 0 6 A1490R:C 0 7 A1491R:G 0 [Edges] 0 {A1409R:C -> A1410R:G: adjacent_5p upward } 0 1 {A1410R:G -> A1409R:C: adjacent_3p downward } 0 2 {A1409R:C -> A1491R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1491R:G -> A1409R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1410R:G -> A1411R:C: adjacent_5p upward } 0 5 {A1411R:C -> A1410R:G: adjacent_3p downward } 0 6 {A1410R:G -> A1490R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1490R:C -> A1410R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1410R:G -> A1491R:G: outward } 0 9 {A1491R:G -> A1410R:G: outward } 0 10 {A1411R:C -> A1412R:C: adjacent_5p upward } 0 11 {A1412R:C -> A1411R:C: adjacent_3p downward } 0 12 {A1411R:C -> A1489R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1489R:G -> A1411R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1412R:C -> A1488R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1488R:G -> A1412R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1488R:G -> A1489R:G: adjacent_5p upward } 0 17 {A1489R:G -> A1488R:G: adjacent_3p downward } 0 18 {A1489R:G -> A1490R:C: adjacent_5p upward } 0 19 {A1490R:C -> A1489R:G: adjacent_3p downward } 0 20 {A1490R:C -> A1491R:G: adjacent_5p upward } 0 21 {A1491R:G -> A1490R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A1410R:G 0 1 A1411R:C 0 2 A1412R:C 0 3 A1413R:A 0 4 A1487R:G 0 5 A1488R:G 0 6 A1489R:G 0 7 A1490R:C 0 [Edges] 0 {A1410R:G -> A1411R:C: adjacent_5p upward } 0 1 {A1411R:C -> A1410R:G: adjacent_3p downward } 0 2 {A1410R:G -> A1490R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1490R:C -> A1410R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1411R:C -> A1412R:C: adjacent_5p upward } 0 5 {A1412R:C -> A1411R:C: adjacent_3p downward } 0 6 {A1411R:C -> A1489R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1489R:G -> A1411R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1412R:C -> A1413R:A: adjacent_5p upward } 0 9 {A1413R:A -> A1412R:C: adjacent_3p downward } 0 10 {A1412R:C -> A1488R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1488R:G -> A1412R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1413R:A -> A1487R:G: pairing antiparallel cis VIII Ww/Ww } 0 13 {A1487R:G -> A1413R:A: pairing antiparallel cis VIII Ww/Ww } 0 14 {A1413R:A -> A1488R:G: outward } 0 15 {A1488R:G -> A1413R:A: outward } 0 16 {A1487R:G -> A1488R:G: adjacent_5p upward } 0 17 {A1488R:G -> A1487R:G: adjacent_3p downward } 0 18 {A1488R:G -> A1489R:G: adjacent_5p upward } 0 19 {A1489R:G -> A1488R:G: adjacent_3p downward } 0 20 {A1489R:G -> A1490R:C: adjacent_5p upward } 0 21 {A1490R:C -> A1489R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1411R:C 0 1 A1412R:C 0 2 A1413R:A 0 3 A1414R:U 0 4 A1486R:G 0 5 A1487R:G 0 6 A1488R:G 0 7 A1489R:G 0 [Edges] 0 {A1411R:C -> A1412R:C: adjacent_5p upward } 0 1 {A1412R:C -> A1411R:C: adjacent_3p downward } 0 2 {A1411R:C -> A1489R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1489R:G -> A1411R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1412R:C -> A1413R:A: adjacent_5p upward } 0 5 {A1413R:A -> A1412R:C: adjacent_3p downward } 0 6 {A1412R:C -> A1488R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1488R:G -> A1412R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1413R:A -> A1414R:U: adjacent_5p upward } 0 9 {A1414R:U -> A1413R:A: adjacent_3p downward } 0 10 {A1413R:A -> A1487R:G: pairing antiparallel cis VIII Ww/Ww } 0 11 {A1487R:G -> A1413R:A: pairing antiparallel cis VIII Ww/Ww } 0 12 {A1413R:A -> A1488R:G: outward } 0 13 {A1488R:G -> A1413R:A: outward } 0 14 {A1414R:U -> A1486R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A1486R:G -> A1414R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A1486R:G -> A1487R:G: adjacent_5p upward } 0 17 {A1487R:G -> A1486R:G: adjacent_3p downward } 0 18 {A1487R:G -> A1488R:G: adjacent_5p upward } 0 19 {A1488R:G -> A1487R:G: adjacent_3p downward } 0 20 {A1488R:G -> A1489R:G: adjacent_5p upward } 0 21 {A1489R:G -> A1488R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1412R:C 0 1 A1413R:A 0 2 A1414R:U 0 3 A1415R:G 0 4 A1485R:U 0 5 A1486R:G 0 6 A1487R:G 0 7 A1488R:G 0 [Edges] 0 {A1412R:C -> A1413R:A: adjacent_5p upward } 0 1 {A1413R:A -> A1412R:C: adjacent_3p downward } 0 2 {A1412R:C -> A1488R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1488R:G -> A1412R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1413R:A -> A1414R:U: adjacent_5p upward } 0 5 {A1414R:U -> A1413R:A: adjacent_3p downward } 0 6 {A1413R:A -> A1487R:G: pairing antiparallel cis VIII Ww/Ww } 0 7 {A1487R:G -> A1413R:A: pairing antiparallel cis VIII Ww/Ww } 0 8 {A1413R:A -> A1488R:G: outward } 0 9 {A1488R:G -> A1413R:A: outward } 0 10 {A1414R:U -> A1415R:G: adjacent_5p } 0 11 {A1415R:G -> A1414R:U: adjacent_3p } 0 12 {A1414R:U -> A1486R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A1486R:G -> A1414R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A1415R:G -> A1485R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A1485R:U -> A1415R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A1415R:G -> A1486R:G: outward } 0 17 {A1486R:G -> A1415R:G: outward } 0 18 {A1485R:U -> A1486R:G: adjacent_5p } 0 19 {A1486R:G -> A1485R:U: adjacent_3p } 0 20 {A1486R:G -> A1487R:G: adjacent_5p upward } 0 21 {A1487R:G -> A1486R:G: adjacent_3p downward } 0 22 {A1487R:G -> A1488R:G: adjacent_5p upward } 0 23 {A1488R:G -> A1487R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A1413R:A 0 1 A1414R:U 0 2 A1415R:G 0 3 A1416R:G 0 4 A1484R:C 0 5 A1485R:U 0 6 A1486R:G 0 7 A1487R:G 0 [Edges] 0 {A1413R:A -> A1414R:U: adjacent_5p upward } 0 1 {A1414R:U -> A1413R:A: adjacent_3p downward } 0 2 {A1413R:A -> A1487R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {A1487R:G -> A1413R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A1414R:U -> A1415R:G: adjacent_5p } 0 5 {A1415R:G -> A1414R:U: adjacent_3p } 0 6 {A1414R:U -> A1486R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A1486R:G -> A1414R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A1415R:G -> A1416R:G: adjacent_5p upward } 0 9 {A1416R:G -> A1415R:G: adjacent_3p downward } 0 10 {A1415R:G -> A1485R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A1485R:U -> A1415R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A1415R:G -> A1486R:G: outward } 0 13 {A1486R:G -> A1415R:G: outward } 0 14 {A1416R:G -> A1484R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1484R:C -> A1416R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1484R:C -> A1485R:U: adjacent_5p upward } 0 17 {A1485R:U -> A1484R:C: adjacent_3p downward } 0 18 {A1485R:U -> A1486R:G: adjacent_5p } 0 19 {A1486R:G -> A1485R:U: adjacent_3p } 0 20 {A1486R:G -> A1487R:G: adjacent_5p upward } 0 21 {A1487R:G -> A1486R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1415R:G 0 1 A1416R:G 0 2 A1417R:G 0 3 A1418R:A 0 4 A1482R:G 0 5 A1483R:A 0 6 A1484R:C 0 7 A1485R:U 0 [Edges] 0 {A1415R:G -> A1416R:G: adjacent_5p upward } 0 1 {A1416R:G -> A1415R:G: adjacent_3p downward } 0 2 {A1415R:G -> A1485R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A1485R:U -> A1415R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A1416R:G -> A1417R:G: adjacent_5p upward } 0 5 {A1417R:G -> A1416R:G: adjacent_3p downward } 0 6 {A1416R:G -> A1484R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1484R:C -> A1416R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1417R:G -> A1418R:A: adjacent_5p } 0 9 {A1418R:A -> A1417R:G: adjacent_3p } 0 10 {A1417R:G -> A1482R:G: inward } 0 11 {A1482R:G -> A1417R:G: inward } 0 12 {A1418R:A -> A1482R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 13 {A1482R:G -> A1418R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 14 {A1418R:A -> A1483R:A: outward } 0 15 {A1483R:A -> A1418R:A: outward } 0 16 {A1482R:G -> A1483R:A: adjacent_5p } 0 17 {A1483R:A -> A1482R:G: adjacent_3p } 0 18 {A1483R:A -> A1484R:C: adjacent_5p upward } 0 19 {A1484R:C -> A1483R:A: adjacent_3p downward } 0 20 {A1484R:C -> A1485R:U: adjacent_5p upward } 0 21 {A1485R:U -> A1484R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 . . . 3 . . 9 . 12 14 . . 4 . . 11 13 . 16 . . 5 . . . 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1416R:G 0 1 A1417R:G 0 2 A1418R:A 0 3 A1419R:G 0 4 A1481R:U 0 5 A1482R:G 0 6 A1483R:A 0 7 A1484R:C 0 [Edges] 0 {A1416R:G -> A1417R:G: adjacent_5p upward } 0 1 {A1417R:G -> A1416R:G: adjacent_3p downward } 0 2 {A1416R:G -> A1484R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1484R:C -> A1416R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1417R:G -> A1418R:A: adjacent_5p } 0 5 {A1418R:A -> A1417R:G: adjacent_3p } 0 6 {A1417R:G -> A1482R:G: inward } 0 7 {A1482R:G -> A1417R:G: inward } 0 8 {A1418R:A -> A1419R:G: adjacent_5p upward } 0 9 {A1419R:G -> A1418R:A: adjacent_3p downward } 0 10 {A1418R:A -> A1482R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 11 {A1482R:G -> A1418R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 12 {A1418R:A -> A1483R:A: outward } 0 13 {A1483R:A -> A1418R:A: outward } 0 14 {A1419R:G -> A1481R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A1481R:U -> A1419R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A1481R:U -> A1482R:G: adjacent_5p upward } 0 17 {A1482R:G -> A1481R:U: adjacent_3p downward } 0 18 {A1482R:G -> A1483R:A: adjacent_5p } 0 19 {A1483R:A -> A1482R:G: adjacent_3p } 0 20 {A1483R:A -> A1484R:C: adjacent_5p upward } 0 21 {A1484R:C -> A1483R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 . . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . 7 11 . 17 . 18 . 6 . . 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1418R:A 0 1 A1419R:G 0 2 A1420R:C 0 3 A1421R:G 0 4 A1479R:C 0 5 A1480R:G 0 6 A1481R:U 0 7 A1482R:G 0 [Edges] 0 {A1418R:A -> A1419R:G: adjacent_5p upward } 0 1 {A1419R:G -> A1418R:A: adjacent_3p downward } 0 2 {A1418R:A -> A1482R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 3 {A1482R:G -> A1418R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 4 {A1419R:G -> A1420R:C: adjacent_5p upward } 0 5 {A1420R:C -> A1419R:G: adjacent_3p downward } 0 6 {A1419R:G -> A1481R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A1481R:U -> A1419R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A1420R:C -> A1421R:G: adjacent_5p } 0 9 {A1421R:G -> A1420R:C: adjacent_3p } 0 10 {A1420R:C -> A1480R:G: pairing antiparallel cis Ww/Ww } 0 11 {A1480R:G -> A1420R:C: pairing antiparallel cis Ww/Ww } 0 12 {A1421R:G -> A1479R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1479R:C -> A1421R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1421R:G -> A1480R:G: outward } 0 15 {A1480R:G -> A1421R:G: outward } 0 16 {A1479R:C -> A1480R:G: adjacent_5p } 0 17 {A1480R:G -> A1479R:C: adjacent_3p } 0 18 {A1480R:G -> A1481R:U: adjacent_5p upward } 0 19 {A1481R:U -> A1480R:G: adjacent_3p downward } 0 20 {A1481R:U -> A1482R:G: adjacent_5p upward } 0 21 {A1482R:G -> A1481R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1419R:G 0 1 A1420R:C 0 2 A1421R:G 0 3 A1422R:G 0 4 A1478R:C 0 5 A1479R:C 0 6 A1480R:G 0 7 A1481R:U 0 [Edges] 0 {A1419R:G -> A1420R:C: adjacent_5p upward } 0 1 {A1420R:C -> A1419R:G: adjacent_3p downward } 0 2 {A1419R:G -> A1481R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A1481R:U -> A1419R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A1420R:C -> A1421R:G: adjacent_5p } 0 5 {A1421R:G -> A1420R:C: adjacent_3p } 0 6 {A1420R:C -> A1480R:G: pairing antiparallel cis Ww/Ww } 0 7 {A1480R:G -> A1420R:C: pairing antiparallel cis Ww/Ww } 0 8 {A1421R:G -> A1422R:G: adjacent_5p upward } 0 9 {A1422R:G -> A1421R:G: adjacent_3p downward } 0 10 {A1421R:G -> A1479R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1479R:C -> A1421R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1421R:G -> A1480R:G: outward } 0 13 {A1480R:G -> A1421R:G: outward } 0 14 {A1422R:G -> A1478R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1478R:C -> A1422R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1478R:C -> A1479R:C: adjacent_5p } 0 17 {A1479R:C -> A1478R:C: adjacent_3p } 0 18 {A1479R:C -> A1480R:G: adjacent_5p } 0 19 {A1480R:G -> A1479R:C: adjacent_3p } 0 20 {A1480R:G -> A1481R:U: adjacent_5p upward } 0 21 {A1481R:U -> A1480R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1420R:C 0 1 A1421R:G 0 2 A1422R:G 0 3 A1423R:G 0 4 A1477R:C 0 5 A1478R:C 0 6 A1479R:C 0 7 A1480R:G 0 [Edges] 0 {A1420R:C -> A1421R:G: adjacent_5p } 0 1 {A1421R:G -> A1420R:C: adjacent_3p } 0 2 {A1420R:C -> A1480R:G: pairing antiparallel cis Ww/Ww } 0 3 {A1480R:G -> A1420R:C: pairing antiparallel cis Ww/Ww } 0 4 {A1421R:G -> A1422R:G: adjacent_5p upward } 0 5 {A1422R:G -> A1421R:G: adjacent_3p downward } 0 6 {A1421R:G -> A1479R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1479R:C -> A1421R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1421R:G -> A1480R:G: outward } 0 9 {A1480R:G -> A1421R:G: outward } 0 10 {A1422R:G -> A1423R:G: adjacent_5p upward } 0 11 {A1423R:G -> A1422R:G: adjacent_3p downward } 0 12 {A1422R:G -> A1478R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1478R:C -> A1422R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1423R:G -> A1477R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1477R:C -> A1423R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1477R:C -> A1478R:C: adjacent_5p } 0 17 {A1478R:C -> A1477R:C: adjacent_3p } 0 18 {A1478R:C -> A1479R:C: adjacent_5p } 0 19 {A1479R:C -> A1478R:C: adjacent_3p } 0 20 {A1479R:C -> A1480R:G: adjacent_5p } 0 21 {A1480R:G -> A1479R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A1421R:G 0 1 A1422R:G 0 2 A1423R:G 0 3 A1424R:C 0 4 A1476R:G 0 5 A1477R:C 0 6 A1478R:C 0 7 A1479R:C 0 [Edges] 0 {A1421R:G -> A1422R:G: adjacent_5p upward } 0 1 {A1422R:G -> A1421R:G: adjacent_3p downward } 0 2 {A1421R:G -> A1479R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1479R:C -> A1421R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1422R:G -> A1423R:G: adjacent_5p upward } 0 5 {A1423R:G -> A1422R:G: adjacent_3p downward } 0 6 {A1422R:G -> A1478R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1478R:C -> A1422R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1423R:G -> A1424R:C: adjacent_5p upward } 0 9 {A1424R:C -> A1423R:G: adjacent_3p downward } 0 10 {A1423R:G -> A1477R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1477R:C -> A1423R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1424R:C -> A1476R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1476R:G -> A1424R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1476R:G -> A1477R:C: adjacent_5p upward } 0 15 {A1477R:C -> A1476R:G: adjacent_3p downward } 0 16 {A1477R:C -> A1478R:C: adjacent_5p } 0 17 {A1478R:C -> A1477R:C: adjacent_3p } 0 18 {A1478R:C -> A1479R:C: adjacent_5p } 0 19 {A1479R:C -> A1478R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1422R:G 0 1 A1423R:G 0 2 A1424R:C 0 3 A1425R:U 0 4 A1475R:G 0 5 A1476R:G 0 6 A1477R:C 0 7 A1478R:C 0 [Edges] 0 {A1422R:G -> A1423R:G: adjacent_5p upward } 0 1 {A1423R:G -> A1422R:G: adjacent_3p downward } 0 2 {A1422R:G -> A1478R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1478R:C -> A1422R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1423R:G -> A1424R:C: adjacent_5p upward } 0 5 {A1424R:C -> A1423R:G: adjacent_3p downward } 0 6 {A1423R:G -> A1477R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1477R:C -> A1423R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1424R:C -> A1425R:U: adjacent_5p upward } 0 9 {A1425R:U -> A1424R:C: adjacent_3p downward } 0 10 {A1424R:C -> A1476R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1476R:G -> A1424R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1425R:U -> A1475R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A1475R:G -> A1425R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A1475R:G -> A1476R:G: adjacent_5p upward } 0 15 {A1476R:G -> A1475R:G: adjacent_3p downward } 0 16 {A1476R:G -> A1477R:C: adjacent_5p upward } 0 17 {A1477R:C -> A1476R:G: adjacent_3p downward } 0 18 {A1477R:C -> A1478R:C: adjacent_5p } 0 19 {A1478R:C -> A1477R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1423R:G 0 1 A1424R:C 0 2 A1425R:U 0 3 A1426R:C 0 4 A1474R:G 0 5 A1475R:G 0 6 A1476R:G 0 7 A1477R:C 0 [Edges] 0 {A1423R:G -> A1424R:C: adjacent_5p upward } 0 1 {A1424R:C -> A1423R:G: adjacent_3p downward } 0 2 {A1423R:G -> A1477R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1477R:C -> A1423R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1424R:C -> A1425R:U: adjacent_5p upward } 0 5 {A1425R:U -> A1424R:C: adjacent_3p downward } 0 6 {A1424R:C -> A1476R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1476R:G -> A1424R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1425R:U -> A1426R:C: adjacent_5p } 0 9 {A1426R:C -> A1425R:U: adjacent_3p } 0 10 {A1425R:U -> A1475R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A1475R:G -> A1425R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A1426R:C -> A1474R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1474R:G -> A1426R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1474R:G -> A1475R:G: adjacent_5p upward } 0 15 {A1475R:G -> A1474R:G: adjacent_3p downward } 0 16 {A1475R:G -> A1476R:G: adjacent_5p upward } 0 17 {A1476R:G -> A1475R:G: adjacent_3p downward } 0 18 {A1476R:G -> A1477R:C: adjacent_5p upward } 0 19 {A1477R:C -> A1476R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1424R:C 0 1 A1425R:U 0 2 A1426R:C 0 3 A1427R:U 0 4 A1473R:A 0 5 A1474R:G 0 6 A1475R:G 0 7 A1476R:G 0 [Edges] 0 {A1424R:C -> A1425R:U: adjacent_5p upward } 0 1 {A1425R:U -> A1424R:C: adjacent_3p downward } 0 2 {A1424R:C -> A1476R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1476R:G -> A1424R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1425R:U -> A1426R:C: adjacent_5p } 0 5 {A1426R:C -> A1425R:U: adjacent_3p } 0 6 {A1425R:U -> A1475R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A1475R:G -> A1425R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A1426R:C -> A1427R:U: adjacent_5p } 0 9 {A1427R:U -> A1426R:C: adjacent_3p } 0 10 {A1426R:C -> A1474R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1474R:G -> A1426R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1427R:U -> A1473R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A1473R:A -> A1427R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A1473R:A -> A1474R:G: adjacent_5p upward } 0 15 {A1474R:G -> A1473R:A: adjacent_3p downward } 0 16 {A1474R:G -> A1475R:G: adjacent_5p upward } 0 17 {A1475R:G -> A1474R:G: adjacent_3p downward } 0 18 {A1475R:G -> A1476R:G: adjacent_5p upward } 0 19 {A1476R:G -> A1475R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1425R:U 0 1 A1426R:C 0 2 A1427R:U 0 3 A1428R:A 0 4 A1472R:U 0 5 A1473R:A 0 6 A1474R:G 0 7 A1475R:G 0 [Edges] 0 {A1425R:U -> A1426R:C: adjacent_5p } 0 1 {A1426R:C -> A1425R:U: adjacent_3p } 0 2 {A1425R:U -> A1475R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A1475R:G -> A1425R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A1426R:C -> A1427R:U: adjacent_5p } 0 5 {A1427R:U -> A1426R:C: adjacent_3p } 0 6 {A1426R:C -> A1474R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1474R:G -> A1426R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1427R:U -> A1428R:A: adjacent_5p upward } 0 9 {A1428R:A -> A1427R:U: adjacent_3p downward } 0 10 {A1427R:U -> A1473R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A1473R:A -> A1427R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A1428R:A -> A1472R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A1472R:U -> A1428R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A1428R:A -> A1473R:A: outward } 0 15 {A1473R:A -> A1428R:A: outward } 0 16 {A1472R:U -> A1473R:A: adjacent_5p upward } 0 17 {A1473R:A -> A1472R:U: adjacent_3p downward } 0 18 {A1473R:A -> A1474R:G: adjacent_5p upward } 0 19 {A1474R:G -> A1473R:A: adjacent_3p downward } 0 20 {A1474R:G -> A1475R:G: adjacent_5p upward } 0 21 {A1475R:G -> A1474R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1426R:C 0 1 A1427R:U 0 2 A1428R:A 0 3 A1429R:C 0 4 A1471R:G 0 5 A1472R:U 0 6 A1473R:A 0 7 A1474R:G 0 [Edges] 0 {A1426R:C -> A1427R:U: adjacent_5p } 0 1 {A1427R:U -> A1426R:C: adjacent_3p } 0 2 {A1426R:C -> A1474R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1474R:G -> A1426R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1427R:U -> A1428R:A: adjacent_5p upward } 0 5 {A1428R:A -> A1427R:U: adjacent_3p downward } 0 6 {A1427R:U -> A1473R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A1473R:A -> A1427R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A1428R:A -> A1429R:C: adjacent_5p upward } 0 9 {A1429R:C -> A1428R:A: adjacent_3p downward } 0 10 {A1428R:A -> A1472R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A1472R:U -> A1428R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A1428R:A -> A1473R:A: outward } 0 13 {A1473R:A -> A1428R:A: outward } 0 14 {A1429R:C -> A1471R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1471R:G -> A1429R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1471R:G -> A1472R:U: adjacent_5p upward } 0 17 {A1472R:U -> A1471R:G: adjacent_3p downward } 0 18 {A1472R:U -> A1473R:A: adjacent_5p upward } 0 19 {A1473R:A -> A1472R:U: adjacent_3p downward } 0 20 {A1473R:A -> A1474R:G: adjacent_5p upward } 0 21 {A1474R:G -> A1473R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1427R:U 0 1 A1428R:A 0 2 A1429R:C 0 3 A1430R:C 0 4 A1470R:G 0 5 A1471R:G 0 6 A1472R:U 0 7 A1473R:A 0 [Edges] 0 {A1427R:U -> A1428R:A: adjacent_5p upward } 0 1 {A1428R:A -> A1427R:U: adjacent_3p downward } 0 2 {A1427R:U -> A1473R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A1473R:A -> A1427R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A1428R:A -> A1429R:C: adjacent_5p upward } 0 5 {A1429R:C -> A1428R:A: adjacent_3p downward } 0 6 {A1428R:A -> A1472R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A1472R:U -> A1428R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A1428R:A -> A1473R:A: outward } 0 9 {A1473R:A -> A1428R:A: outward } 0 10 {A1429R:C -> A1430R:C: adjacent_5p upward } 0 11 {A1430R:C -> A1429R:C: adjacent_3p downward } 0 12 {A1429R:C -> A1471R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1471R:G -> A1429R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1430R:C -> A1470R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1470R:G -> A1430R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1470R:G -> A1471R:G: adjacent_5p upward } 0 17 {A1471R:G -> A1470R:G: adjacent_3p downward } 0 18 {A1471R:G -> A1472R:U: adjacent_5p upward } 0 19 {A1472R:U -> A1471R:G: adjacent_3p downward } 0 20 {A1472R:U -> A1473R:A: adjacent_5p upward } 0 21 {A1473R:A -> A1472R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A1428R:A 0 1 A1429R:C 0 2 A1430R:C 0 3 A1431R:C 0 4 A1469R:G 0 5 A1470R:G 0 6 A1471R:G 0 7 A1472R:U 0 [Edges] 0 {A1428R:A -> A1429R:C: adjacent_5p upward } 0 1 {A1429R:C -> A1428R:A: adjacent_3p downward } 0 2 {A1428R:A -> A1472R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A1472R:U -> A1428R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A1429R:C -> A1430R:C: adjacent_5p upward } 0 5 {A1430R:C -> A1429R:C: adjacent_3p downward } 0 6 {A1429R:C -> A1471R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1471R:G -> A1429R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1430R:C -> A1431R:C: adjacent_5p upward } 0 9 {A1431R:C -> A1430R:C: adjacent_3p downward } 0 10 {A1430R:C -> A1470R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1470R:G -> A1430R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1431R:C -> A1469R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1469R:G -> A1431R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1469R:G -> A1470R:G: adjacent_5p upward } 0 15 {A1470R:G -> A1469R:G: adjacent_3p downward } 0 16 {A1470R:G -> A1471R:G: adjacent_5p upward } 0 17 {A1471R:G -> A1470R:G: adjacent_3p downward } 0 18 {A1471R:G -> A1472R:U: adjacent_5p upward } 0 19 {A1472R:U -> A1471R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1429R:C 0 1 A1430R:C 0 2 A1431R:C 0 3 A1432R:G 0 4 A1468R:A 0 5 A1469R:G 0 6 A1470R:G 0 7 A1471R:G 0 [Edges] 0 {A1429R:C -> A1430R:C: adjacent_5p upward } 0 1 {A1430R:C -> A1429R:C: adjacent_3p downward } 0 2 {A1429R:C -> A1471R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1471R:G -> A1429R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1430R:C -> A1431R:C: adjacent_5p upward } 0 5 {A1431R:C -> A1430R:C: adjacent_3p downward } 0 6 {A1430R:C -> A1470R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1470R:G -> A1430R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1431R:C -> A1432R:G: adjacent_5p upward } 0 9 {A1432R:G -> A1431R:C: adjacent_3p downward } 0 10 {A1431R:C -> A1469R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1469R:G -> A1431R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1432R:G -> A1468R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A1468R:A -> A1432R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A1468R:A -> A1469R:G: adjacent_5p upward } 0 15 {A1469R:G -> A1468R:A: adjacent_3p downward } 0 16 {A1469R:G -> A1470R:G: adjacent_5p upward } 0 17 {A1470R:G -> A1469R:G: adjacent_3p downward } 0 18 {A1470R:G -> A1471R:G: adjacent_5p upward } 0 19 {A1471R:G -> A1470R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1434R:A 0 1 A1435R:G 0 2 A1436R:U 0 3 A1437R:C 0 4 A1464R:G 0 5 A1465R:C 0 6 A1466R:C 0 7 A1467R:G 0 [Edges] 0 {A1434R:A -> A1435R:G: adjacent_5p upward } 0 1 {A1435R:G -> A1434R:A: adjacent_3p downward } 0 2 {A1434R:A -> A1467R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A1467R:G -> A1434R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A1435R:G -> A1436R:U: adjacent_5p upward } 0 5 {A1436R:U -> A1435R:G: adjacent_3p downward } 0 6 {A1435R:G -> A1466R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1466R:C -> A1435R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1436R:U -> A1437R:C: adjacent_5p upward } 0 9 {A1437R:C -> A1436R:U: adjacent_3p downward } 0 10 {A1436R:U -> A1465R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {A1465R:C -> A1436R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {A1437R:C -> A1464R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1464R:G -> A1437R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1464R:G -> A1465R:C: adjacent_5p upward } 0 15 {A1465R:C -> A1464R:G: adjacent_3p downward } 0 16 {A1465R:C -> A1466R:C: adjacent_5p upward } 0 17 {A1466R:C -> A1465R:C: adjacent_3p downward } 0 18 {A1466R:C -> A1467R:G: adjacent_5p upward } 0 19 {A1467R:G -> A1466R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1435R:G 0 1 A1436R:U 0 2 A1437R:C 0 3 A1438R:G 0 4 A1463R:C 0 5 A1464R:G 0 6 A1465R:C 0 7 A1466R:C 0 [Edges] 0 {A1435R:G -> A1436R:U: adjacent_5p upward } 0 1 {A1436R:U -> A1435R:G: adjacent_3p downward } 0 2 {A1435R:G -> A1466R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1466R:C -> A1435R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1436R:U -> A1437R:C: adjacent_5p upward } 0 5 {A1437R:C -> A1436R:U: adjacent_3p downward } 0 6 {A1436R:U -> A1465R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {A1465R:C -> A1436R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A1437R:C -> A1438R:G: adjacent_5p upward } 0 9 {A1438R:G -> A1437R:C: adjacent_3p downward } 0 10 {A1437R:C -> A1464R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1464R:G -> A1437R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1438R:G -> A1463R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1463R:C -> A1438R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1438R:G -> A1464R:G: outward } 0 15 {A1464R:G -> A1438R:G: outward } 0 16 {A1463R:C -> A1464R:G: adjacent_5p upward } 0 17 {A1464R:G -> A1463R:C: adjacent_3p downward } 0 18 {A1464R:G -> A1465R:C: adjacent_5p upward } 0 19 {A1465R:C -> A1464R:G: adjacent_3p downward } 0 20 {A1465R:C -> A1466R:C: adjacent_5p upward } 0 21 {A1466R:C -> A1465R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1436R:U 0 1 A1437R:C 0 2 A1438R:G 0 3 A1439R:C 0 4 A1462R:G 0 5 A1463R:C 0 6 A1464R:G 0 7 A1465R:C 0 [Edges] 0 {A1436R:U -> A1437R:C: adjacent_5p upward } 0 1 {A1437R:C -> A1436R:U: adjacent_3p downward } 0 2 {A1436R:U -> A1465R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {A1465R:C -> A1436R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A1437R:C -> A1438R:G: adjacent_5p upward } 0 5 {A1438R:G -> A1437R:C: adjacent_3p downward } 0 6 {A1437R:C -> A1464R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1464R:G -> A1437R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1438R:G -> A1439R:C: adjacent_5p upward } 0 9 {A1439R:C -> A1438R:G: adjacent_3p downward } 0 10 {A1438R:G -> A1463R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1463R:C -> A1438R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1438R:G -> A1464R:G: outward } 0 13 {A1464R:G -> A1438R:G: outward } 0 14 {A1439R:C -> A1462R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1462R:G -> A1439R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1462R:G -> A1463R:C: adjacent_5p upward } 0 17 {A1463R:C -> A1462R:G: adjacent_3p downward } 0 18 {A1463R:C -> A1464R:G: adjacent_5p upward } 0 19 {A1464R:G -> A1463R:C: adjacent_3p downward } 0 20 {A1464R:G -> A1465R:C: adjacent_5p upward } 0 21 {A1465R:C -> A1464R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1437R:C 0 1 A1438R:G 0 2 A1439R:C 0 3 A1440R:C 0 4 A1461R:G 0 5 A1462R:G 0 6 A1463R:C 0 7 A1464R:G 0 [Edges] 0 {A1437R:C -> A1438R:G: adjacent_5p upward } 0 1 {A1438R:G -> A1437R:C: adjacent_3p downward } 0 2 {A1437R:C -> A1464R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1464R:G -> A1437R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1438R:G -> A1439R:C: adjacent_5p upward } 0 5 {A1439R:C -> A1438R:G: adjacent_3p downward } 0 6 {A1438R:G -> A1463R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1463R:C -> A1438R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1438R:G -> A1464R:G: outward } 0 9 {A1464R:G -> A1438R:G: outward } 0 10 {A1439R:C -> A1440R:C: adjacent_5p upward } 0 11 {A1440R:C -> A1439R:C: adjacent_3p downward } 0 12 {A1439R:C -> A1462R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1462R:G -> A1439R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1440R:C -> A1461R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1461R:G -> A1440R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1461R:G -> A1462R:G: adjacent_5p upward } 0 17 {A1462R:G -> A1461R:G: adjacent_3p downward } 0 18 {A1462R:G -> A1463R:C: adjacent_5p upward } 0 19 {A1463R:C -> A1462R:G: adjacent_3p downward } 0 20 {A1463R:C -> A1464R:G: adjacent_5p upward } 0 21 {A1464R:G -> A1463R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A1438R:G 0 1 A1439R:C 0 2 A1440R:C 0 3 A1441R:G 0 4 A1460R:A 0 5 A1461R:G 0 6 A1462R:G 0 7 A1463R:C 0 [Edges] 0 {A1438R:G -> A1439R:C: adjacent_5p upward } 0 1 {A1439R:C -> A1438R:G: adjacent_3p downward } 0 2 {A1438R:G -> A1463R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1463R:C -> A1438R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1439R:C -> A1440R:C: adjacent_5p upward } 0 5 {A1440R:C -> A1439R:C: adjacent_3p downward } 0 6 {A1439R:C -> A1462R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1462R:G -> A1439R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1440R:C -> A1441R:G: adjacent_5p upward } 0 9 {A1441R:G -> A1440R:C: adjacent_3p downward } 0 10 {A1440R:C -> A1461R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1461R:G -> A1440R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1441R:G -> A1460R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A1460R:A -> A1441R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A1460R:A -> A1461R:G: adjacent_5p upward } 0 15 {A1461R:G -> A1460R:A: adjacent_3p downward } 0 16 {A1461R:G -> A1462R:G: adjacent_5p upward } 0 17 {A1462R:G -> A1461R:G: adjacent_3p downward } 0 18 {A1462R:G -> A1463R:C: adjacent_5p upward } 0 19 {A1463R:C -> A1462R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1447R:G 0 1 A1448R:C 0 2 A1449R:C 0 3 A1450R:U 0 4 A1453R:G 0 5 A1454R:G 0 6 A1455R:G 0 7 A1459R:C 0 [Edges] 0 {A1447R:G -> A1448R:C: adjacent_5p upward } 0 1 {A1448R:C -> A1447R:G: adjacent_3p downward } 0 2 {A1447R:G -> A1459R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1459R:C -> A1447R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1448R:C -> A1449R:C: adjacent_5p } 0 5 {A1449R:C -> A1448R:C: adjacent_3p } 0 6 {A1448R:C -> A1455R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1455R:G -> A1448R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1449R:C -> A1450R:U: adjacent_5p upward } 0 9 {A1450R:U -> A1449R:C: adjacent_3p downward } 0 10 {A1449R:C -> A1454R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1454R:G -> A1449R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1450R:U -> A1453R:G: pairing parallel trans one_hbond Ws/Ww } 0 13 {A1453R:G -> A1450R:U: pairing parallel trans one_hbond Ww/Ws } 0 14 {A1453R:G -> A1454R:G: adjacent_5p outward } 0 15 {A1454R:G -> A1453R:G: adjacent_3p outward } 0 16 {A1454R:G -> A1455R:G: adjacent_5p upward } 0 17 {A1455R:G -> A1454R:G: adjacent_3p downward } 0 18 {A1455R:G -> A1459R:C: adjacent_5p upward } 0 19 {A1459R:C -> A1455R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1507R:A 0 1 A1508R:G 0 2 A1509R:C 0 3 A1510R:U 0 4 A1525R:G 0 5 A1526R:G 0 6 A1527R:C 0 7 A1528R:U 0 [Edges] 0 {A1507R:A -> A1508R:G: adjacent_5p upward } 0 1 {A1508R:G -> A1507R:A: adjacent_3p downward } 0 2 {A1507R:A -> A1528R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A1528R:U -> A1507R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A1508R:G -> A1509R:C: adjacent_5p upward } 0 5 {A1509R:C -> A1508R:G: adjacent_3p downward } 0 6 {A1508R:G -> A1527R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1527R:C -> A1508R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1509R:C -> A1510R:U: adjacent_5p upward } 0 9 {A1510R:U -> A1509R:C: adjacent_3p downward } 0 10 {A1509R:C -> A1526R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1526R:G -> A1509R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1510R:U -> A1525R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A1525R:G -> A1510R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A1525R:G -> A1526R:G: adjacent_5p upward } 0 15 {A1526R:G -> A1525R:G: adjacent_3p downward } 0 16 {A1526R:G -> A1527R:C: adjacent_5p upward } 0 17 {A1527R:C -> A1526R:G: adjacent_3p downward } 0 18 {A1527R:C -> A1528R:U: adjacent_5p upward } 0 19 {A1528R:U -> A1527R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A1508R:G 0 1 A1509R:C 0 2 A1510R:U 0 3 A1511R:G 0 4 A1524R:C 0 5 A1525R:G 0 6 A1526R:G 0 7 A1527R:C 0 [Edges] 0 {A1508R:G -> A1509R:C: adjacent_5p upward } 0 1 {A1509R:C -> A1508R:G: adjacent_3p downward } 0 2 {A1508R:G -> A1527R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1527R:C -> A1508R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1509R:C -> A1510R:U: adjacent_5p upward } 0 5 {A1510R:U -> A1509R:C: adjacent_3p downward } 0 6 {A1509R:C -> A1526R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1526R:G -> A1509R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1510R:U -> A1511R:G: adjacent_5p } 0 9 {A1511R:G -> A1510R:U: adjacent_3p } 0 10 {A1510R:U -> A1525R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A1525R:G -> A1510R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A1511R:G -> A1524R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1524R:C -> A1511R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1511R:G -> A1525R:G: outward } 0 15 {A1525R:G -> A1511R:G: outward } 0 16 {A1524R:C -> A1525R:G: adjacent_5p upward } 0 17 {A1525R:G -> A1524R:C: adjacent_3p downward } 0 18 {A1525R:G -> A1526R:G: adjacent_5p upward } 0 19 {A1526R:G -> A1525R:G: adjacent_3p downward } 0 20 {A1526R:G -> A1527R:C: adjacent_5p upward } 0 21 {A1527R:C -> A1526R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1509R:C 0 1 A1510R:U 0 2 A1511R:G 0 3 A1512R:U 0 4 A1523R:G 0 5 A1524R:C 0 6 A1525R:G 0 7 A1526R:G 0 [Edges] 0 {A1509R:C -> A1510R:U: adjacent_5p upward } 0 1 {A1510R:U -> A1509R:C: adjacent_3p downward } 0 2 {A1509R:C -> A1526R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1526R:G -> A1509R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1510R:U -> A1511R:G: adjacent_5p } 0 5 {A1511R:G -> A1510R:U: adjacent_3p } 0 6 {A1510R:U -> A1525R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A1525R:G -> A1510R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A1511R:G -> A1512R:U: adjacent_5p upward } 0 9 {A1512R:U -> A1511R:G: adjacent_3p downward } 0 10 {A1511R:G -> A1524R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A1524R:C -> A1511R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A1511R:G -> A1525R:G: outward } 0 13 {A1525R:G -> A1511R:G: outward } 0 14 {A1512R:U -> A1523R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A1523R:G -> A1512R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A1523R:G -> A1524R:C: adjacent_5p upward } 0 17 {A1524R:C -> A1523R:G: adjacent_3p downward } 0 18 {A1524R:C -> A1525R:G: adjacent_5p upward } 0 19 {A1525R:G -> A1524R:C: adjacent_3p downward } 0 20 {A1525R:G -> A1526R:G: adjacent_5p upward } 0 21 {A1526R:G -> A1525R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1510R:U 0 1 A1511R:G 0 2 A1512R:U 0 3 A1513R:A 0 4 A1522R:U 0 5 A1523R:G 0 6 A1524R:C 0 7 A1525R:G 0 [Edges] 0 {A1510R:U -> A1511R:G: adjacent_5p } 0 1 {A1511R:G -> A1510R:U: adjacent_3p } 0 2 {A1510R:U -> A1525R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A1525R:G -> A1510R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A1511R:G -> A1512R:U: adjacent_5p upward } 0 5 {A1512R:U -> A1511R:G: adjacent_3p downward } 0 6 {A1511R:G -> A1524R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1524R:C -> A1511R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1511R:G -> A1525R:G: outward } 0 9 {A1525R:G -> A1511R:G: outward } 0 10 {A1512R:U -> A1513R:A: adjacent_5p upward } 0 11 {A1513R:A -> A1512R:U: adjacent_3p downward } 0 12 {A1512R:U -> A1523R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A1523R:G -> A1512R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A1513R:A -> A1522R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A1522R:U -> A1513R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A1513R:A -> A1523R:G: outward } 0 17 {A1523R:G -> A1513R:A: outward } 0 18 {A1522R:U -> A1523R:G: adjacent_5p } 0 19 {A1523R:G -> A1522R:U: adjacent_3p } 0 20 {A1523R:G -> A1524R:C: adjacent_5p upward } 0 21 {A1524R:C -> A1523R:G: adjacent_3p downward } 0 22 {A1524R:C -> A1525R:G: adjacent_5p upward } 0 23 {A1525R:G -> A1524R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A1511R:G 0 1 A1512R:U 0 2 A1513R:A 0 3 A1514R:C 0 4 A1521R:G 0 5 A1522R:U 0 6 A1523R:G 0 7 A1524R:C 0 [Edges] 0 {A1511R:G -> A1512R:U: adjacent_5p upward } 0 1 {A1512R:U -> A1511R:G: adjacent_3p downward } 0 2 {A1511R:G -> A1524R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1524R:C -> A1511R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1512R:U -> A1513R:A: adjacent_5p upward } 0 5 {A1513R:A -> A1512R:U: adjacent_3p downward } 0 6 {A1512R:U -> A1523R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A1523R:G -> A1512R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A1513R:A -> A1514R:C: adjacent_5p upward } 0 9 {A1514R:C -> A1513R:A: adjacent_3p downward } 0 10 {A1513R:A -> A1522R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A1522R:U -> A1513R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A1513R:A -> A1523R:G: outward } 0 13 {A1523R:G -> A1513R:A: outward } 0 14 {A1514R:C -> A1521R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1521R:G -> A1514R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1521R:G -> A1522R:U: adjacent_5p upward } 0 17 {A1522R:U -> A1521R:G: adjacent_3p downward } 0 18 {A1522R:U -> A1523R:G: adjacent_5p } 0 19 {A1523R:G -> A1522R:U: adjacent_3p } 0 20 {A1523R:G -> A1524R:C: adjacent_5p upward } 0 21 {A1524R:C -> A1523R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A1512R:U 0 1 A1513R:A 0 2 A1514R:C 0 3 A1515R:C 0 4 A1520R:G 0 5 A1521R:G 0 6 A1522R:U 0 7 A1523R:G 0 [Edges] 0 {A1512R:U -> A1513R:A: adjacent_5p upward } 0 1 {A1513R:A -> A1512R:U: adjacent_3p downward } 0 2 {A1512R:U -> A1523R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A1523R:G -> A1512R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A1513R:A -> A1514R:C: adjacent_5p upward } 0 5 {A1514R:C -> A1513R:A: adjacent_3p downward } 0 6 {A1513R:A -> A1522R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A1522R:U -> A1513R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A1513R:A -> A1523R:G: outward } 0 9 {A1523R:G -> A1513R:A: outward } 0 10 {A1514R:C -> A1515R:C: adjacent_5p upward } 0 11 {A1515R:C -> A1514R:C: adjacent_3p downward } 0 12 {A1514R:C -> A1521R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A1521R:G -> A1514R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A1515R:C -> A1520R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A1520R:G -> A1515R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A1520R:G -> A1521R:G: adjacent_5p upward } 0 17 {A1521R:G -> A1520R:G: adjacent_3p downward } 0 18 {A1521R:G -> A1522R:U: adjacent_5p upward } 0 19 {A1522R:U -> A1521R:G: adjacent_3p downward } 0 20 {A1522R:U -> A1523R:G: adjacent_5p } 0 21 {A1523R:G -> A1522R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A847R:U 0 1 A848R:C 0 2 A849R:A 0 3 A850R:U 0 4 A861R:A 0 5 A862R:U 0 6 A863R:G 0 7 A864R:A 0 [Edges] 0 {A847R:U -> A848R:C: adjacent_5p upward } 0 1 {A848R:C -> A847R:U: adjacent_3p downward } 0 2 {A847R:U -> A864R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A864R:A -> A847R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A848R:C -> A849R:A: adjacent_5p upward } 0 5 {A849R:A -> A848R:C: adjacent_3p downward } 0 6 {A848R:C -> A863R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A863R:G -> A848R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A849R:A -> A850R:U: adjacent_5p upward } 0 9 {A850R:U -> A849R:A: adjacent_3p downward } 0 10 {A849R:A -> A862R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A862R:U -> A849R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A849R:A -> A863R:G: outward } 0 13 {A863R:G -> A849R:A: outward } 0 14 {A850R:U -> A861R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A861R:A -> A850R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A861R:A -> A862R:U: adjacent_5p upward } 0 17 {A862R:U -> A861R:A: adjacent_3p downward } 0 18 {A862R:U -> A863R:G: adjacent_5p upward } 0 19 {A863R:G -> A862R:U: adjacent_3p downward } 0 20 {A863R:G -> A864R:A: adjacent_5p upward } 0 21 {A864R:A -> A863R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A848R:C 0 1 A849R:A 0 2 A850R:U 0 3 A851R:G 0 4 A860R:C 0 5 A861R:A 0 6 A862R:U 0 7 A863R:G 0 [Edges] 0 {A848R:C -> A849R:A: adjacent_5p upward } 0 1 {A849R:A -> A848R:C: adjacent_3p downward } 0 2 {A848R:C -> A863R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A863R:G -> A848R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A849R:A -> A850R:U: adjacent_5p upward } 0 5 {A850R:U -> A849R:A: adjacent_3p downward } 0 6 {A849R:A -> A862R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A862R:U -> A849R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A849R:A -> A863R:G: outward } 0 9 {A863R:G -> A849R:A: outward } 0 10 {A850R:U -> A851R:G: adjacent_5p } 0 11 {A851R:G -> A850R:U: adjacent_3p } 0 12 {A850R:U -> A861R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A861R:A -> A850R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A851R:G -> A860R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A860R:C -> A851R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A851R:G -> A861R:A: outward } 0 17 {A861R:A -> A851R:G: outward } 0 18 {A860R:C -> A861R:A: adjacent_5p upward } 0 19 {A861R:A -> A860R:C: adjacent_3p downward } 0 20 {A861R:A -> A862R:U: adjacent_5p upward } 0 21 {A862R:U -> A861R:A: adjacent_3p downward } 0 22 {A862R:U -> A863R:G: adjacent_5p upward } 0 23 {A863R:G -> A862R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A869R:C 0 1 A870R:C 0 2 A871R:C 0 3 A872R:U 0 4 B874R:A 0 5 B875R:G 0 6 B876R:G 0 7 B877R:G 0 [Edges] 0 {A869R:C -> A870R:C: adjacent_5p upward } 0 1 {A870R:C -> A869R:C: adjacent_3p downward } 0 2 {A869R:C -> B877R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B877R:G -> A869R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A870R:C -> A871R:C: adjacent_5p upward } 0 5 {A871R:C -> A870R:C: adjacent_3p downward } 0 6 {A870R:C -> B876R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B876R:G -> A870R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A871R:C -> A872R:U: adjacent_5p } 0 9 {A872R:U -> A871R:C: adjacent_3p } 0 10 {A871R:C -> B875R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B875R:G -> A871R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A872R:U -> B874R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B874R:A -> A872R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A872R:U -> B875R:G: outward } 0 15 {B875R:G -> A872R:U: outward } 0 16 {B874R:A -> B875R:G: adjacent_5p upward } 0 17 {B875R:G -> B874R:A: adjacent_3p downward } 0 18 {B875R:G -> B876R:G: adjacent_5p upward } 0 19 {B876R:G -> B875R:G: adjacent_3p downward } 0 20 {B876R:G -> B877R:G: adjacent_5p upward } 0 21 {B877R:G -> B876R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:U 0 1 A3R:U 0 2 A4R:G 0 3 A5R:C 0 4 A19R:G 0 5 A20R:C 0 6 A21R:A 0 7 A22R:A 0 [Edges] 0 {A2R:U -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:U: adjacent_3p downward } 0 2 {A2R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A22R:A -> A2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A21R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A21R:A: outward } 0 13 {A21R:A -> A4R:G: outward } 0 14 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A19R:G -> A20R:C: adjacent_5p upward } 0 17 {A20R:C -> A19R:G: adjacent_3p downward } 0 18 {A20R:C -> A21R:A: adjacent_5p upward } 0 19 {A21R:A -> A20R:C: adjacent_3p downward } 0 20 {A21R:A -> A22R:A: adjacent_5p upward } 0 21 {A22R:A -> A21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:C 0 3 A6R:U 0 4 A18R:A 0 5 A19R:G 0 6 A20R:C 0 7 A21R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A21R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A21R:A: outward } 0 9 {A21R:A -> A4R:G: outward } 0 10 {A5R:C -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:C: adjacent_3p downward } 0 12 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A18R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A18R:A -> A19R:G: adjacent_5p upward } 0 17 {A19R:G -> A18R:A: adjacent_3p downward } 0 18 {A19R:G -> A20R:C: adjacent_5p upward } 0 19 {A20R:C -> A19R:G: adjacent_3p downward } 0 20 {A20R:C -> A21R:A: adjacent_5p upward } 0 21 {A21R:A -> A20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:C 0 2 A6R:U 0 3 A7R:G 0 4 A17R:C 0 5 A18R:A 0 6 A19R:G 0 7 A20R:C 0 [Edges] 0 {A4R:G -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:U -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:U: adjacent_3p downward } 0 10 {A6R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A18R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:G -> A18R:A: outward } 0 15 {A18R:A -> A7R:G: outward } 0 16 {A17R:C -> A18R:A: adjacent_5p } 0 17 {A18R:A -> A17R:C: adjacent_3p } 0 18 {A18R:A -> A19R:G: adjacent_5p upward } 0 19 {A19R:G -> A18R:A: adjacent_3p downward } 0 20 {A19R:G -> A20R:C: adjacent_5p upward } 0 21 {A20R:C -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:U 0 2 A12R:G 0 3 A13R:C 0 4 B12R:G 0 5 B13R:C 0 6 B14R:A 0 7 B15R:C 0 [Edges] 0 {A10R:G -> A11R:U: adjacent_5p upward } 0 1 {A11R:U -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:U -> A12R:G: adjacent_5p } 0 5 {A12R:G -> A11R:U: adjacent_3p } 0 6 {A11R:U -> B14R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B14R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A12R:G -> A13R:C: adjacent_5p upward } 0 9 {A13R:C -> A12R:G: adjacent_3p downward } 0 10 {A12R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B13R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:G -> B14R:A: outward } 0 13 {B14R:A -> A12R:G: outward } 0 14 {A13R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B12R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B12R:G -> B13R:C: adjacent_5p upward } 0 17 {B13R:C -> B12R:G: adjacent_3p downward } 0 18 {B13R:C -> B14R:A: adjacent_5p upward } 0 19 {B14R:A -> B13R:C: adjacent_3p downward } 0 20 {B14R:A -> B15R:C: adjacent_5p upward } 0 21 {B15R:C -> B14R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:G 0 2 A13R:C 0 3 A14R:A 0 4 B11R:U 0 5 B12R:G 0 6 B13R:C 0 7 B14R:A 0 [Edges] 0 {A11R:U -> A12R:G: adjacent_5p } 0 1 {A12R:G -> A11R:U: adjacent_3p } 0 2 {A11R:U -> B14R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B14R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A12R:G -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B13R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> B14R:A: outward } 0 9 {B14R:A -> A12R:G: outward } 0 10 {A13R:C -> A14R:A: adjacent_5p upward } 0 11 {A14R:A -> A13R:C: adjacent_3p downward } 0 12 {A13R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B12R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:A -> B11R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B11R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A14R:A -> B12R:G: outward } 0 17 {B12R:G -> A14R:A: outward } 0 18 {B11R:U -> B12R:G: adjacent_5p } 0 19 {B12R:G -> B11R:U: adjacent_3p } 0 20 {B12R:G -> B13R:C: adjacent_5p upward } 0 21 {B13R:C -> B12R:G: adjacent_3p downward } 0 22 {B13R:C -> B14R:A: adjacent_5p upward } 0 23 {B14R:A -> B13R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:C 0 2 A14R:A 0 3 A15R:C 0 4 B10R:G 0 5 B11R:U 0 6 B12R:G 0 7 B13R:C 0 [Edges] 0 {A12R:G -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B13R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:C -> A14R:A: adjacent_5p upward } 0 5 {A14R:A -> A13R:C: adjacent_3p downward } 0 6 {A13R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:A -> A15R:C: adjacent_5p upward } 0 9 {A15R:C -> A14R:A: adjacent_3p downward } 0 10 {A14R:A -> B11R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B11R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A14R:A -> B12R:G: outward } 0 13 {B12R:G -> A14R:A: outward } 0 14 {A15R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B10R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B10R:G -> B11R:U: adjacent_5p upward } 0 17 {B11R:U -> B10R:G: adjacent_3p downward } 0 18 {B11R:U -> B12R:G: adjacent_5p } 0 19 {B12R:G -> B11R:U: adjacent_3p } 0 20 {B12R:G -> B13R:C: adjacent_5p upward } 0 21 {B13R:C -> B12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B2R:U 0 1 B3R:U 0 2 B4R:G 0 3 B5R:C 0 4 B19R:G 0 5 B20R:C 0 6 B21R:A 0 7 B22R:A 0 [Edges] 0 {B2R:U -> B3R:U: adjacent_5p upward } 0 1 {B3R:U -> B2R:U: adjacent_3p downward } 0 2 {B2R:U -> B22R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B22R:A -> B2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B3R:U -> B4R:G: adjacent_5p upward } 0 5 {B4R:G -> B3R:U: adjacent_3p downward } 0 6 {B3R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B21R:A -> B3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B4R:G -> B5R:C: adjacent_5p upward } 0 9 {B5R:C -> B4R:G: adjacent_3p downward } 0 10 {B4R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B20R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B4R:G -> B21R:A: outward } 0 13 {B21R:A -> B4R:G: outward } 0 14 {B5R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B19R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B19R:G -> B20R:C: adjacent_5p upward } 0 17 {B20R:C -> B19R:G: adjacent_3p downward } 0 18 {B20R:C -> B21R:A: adjacent_5p upward } 0 19 {B21R:A -> B20R:C: adjacent_3p downward } 0 20 {B21R:A -> B22R:A: adjacent_5p upward } 0 21 {B22R:A -> B21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B3R:U 0 1 B4R:G 0 2 B5R:C 0 3 B6R:U 0 4 B18R:A 0 5 B19R:G 0 6 B20R:C 0 7 B21R:A 0 [Edges] 0 {B3R:U -> B4R:G: adjacent_5p upward } 0 1 {B4R:G -> B3R:U: adjacent_3p downward } 0 2 {B3R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B21R:A -> B3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B4R:G -> B5R:C: adjacent_5p upward } 0 5 {B5R:C -> B4R:G: adjacent_3p downward } 0 6 {B4R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B20R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B4R:G -> B21R:A: outward } 0 9 {B21R:A -> B4R:G: outward } 0 10 {B5R:C -> B6R:U: adjacent_5p upward } 0 11 {B6R:U -> B5R:C: adjacent_3p downward } 0 12 {B5R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B19R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B6R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B18R:A -> B6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B18R:A -> B19R:G: adjacent_5p upward } 0 17 {B19R:G -> B18R:A: adjacent_3p downward } 0 18 {B19R:G -> B20R:C: adjacent_5p upward } 0 19 {B20R:C -> B19R:G: adjacent_3p downward } 0 20 {B20R:C -> B21R:A: adjacent_5p upward } 0 21 {B21R:A -> B20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B4R:G 0 1 B5R:C 0 2 B6R:U 0 3 B7R:G 0 4 B17R:C 0 5 B18R:A 0 6 B19R:G 0 7 B20R:C 0 [Edges] 0 {B4R:G -> B5R:C: adjacent_5p upward } 0 1 {B5R:C -> B4R:G: adjacent_3p downward } 0 2 {B4R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B20R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B5R:C -> B6R:U: adjacent_5p upward } 0 5 {B6R:U -> B5R:C: adjacent_3p downward } 0 6 {B5R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B19R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B6R:U -> B7R:G: adjacent_5p upward } 0 9 {B7R:G -> B6R:U: adjacent_3p downward } 0 10 {B6R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B18R:A -> B6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B7R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B17R:C -> B7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B7R:G -> B18R:A: outward } 0 15 {B18R:A -> B7R:G: outward } 0 16 {B17R:C -> B18R:A: adjacent_5p upward } 0 17 {B18R:A -> B17R:C: adjacent_3p downward } 0 18 {B18R:A -> B19R:G: adjacent_5p upward } 0 19 {B19R:G -> B18R:A: adjacent_3p downward } 0 20 {B19R:G -> B20R:C: adjacent_5p upward } 0 21 {B20R:C -> B19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:U 0 1 A3R:U 0 2 A4R:G 0 3 A5R:C 0 4 A19R:G 0 5 A20R:C 0 6 A21R:A 0 7 A22R:A 0 [Edges] 0 {A2R:U -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:U: adjacent_3p downward } 0 2 {A2R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A22R:A -> A2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A21R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A21R:A: outward } 0 13 {A21R:A -> A4R:G: outward } 0 14 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A19R:G -> A20R:C: adjacent_5p upward } 0 17 {A20R:C -> A19R:G: adjacent_3p downward } 0 18 {A20R:C -> A21R:A: adjacent_5p upward } 0 19 {A21R:A -> A20R:C: adjacent_3p downward } 0 20 {A21R:A -> A22R:A: adjacent_5p upward } 0 21 {A22R:A -> A21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:C 0 3 A6R:U 0 4 A18R:G 0 5 A19R:G 0 6 A20R:C 0 7 A21R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A21R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A21R:A: outward } 0 9 {A21R:A -> A4R:G: outward } 0 10 {A5R:C -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:C: adjacent_3p downward } 0 12 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A18R:G -> A6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A18R:G -> A19R:G: adjacent_5p upward } 0 17 {A19R:G -> A18R:G: adjacent_3p downward } 0 18 {A19R:G -> A20R:C: adjacent_5p upward } 0 19 {A20R:C -> A19R:G: adjacent_3p downward } 0 20 {A20R:C -> A21R:A: adjacent_5p upward } 0 21 {A21R:A -> A20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:C 0 2 A6R:U 0 3 A7R:G 0 4 A17R:C 0 5 A18R:G 0 6 A19R:G 0 7 A20R:C 0 [Edges] 0 {A4R:G -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:U -> A7R:G: adjacent_5p } 0 9 {A7R:G -> A6R:U: adjacent_3p } 0 10 {A6R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A18R:G -> A6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A7R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:G -> A18R:G: outward } 0 15 {A18R:G -> A7R:G: outward } 0 16 {A17R:C -> A18R:G: adjacent_5p } 0 17 {A18R:G -> A17R:C: adjacent_3p } 0 18 {A18R:G -> A19R:G: adjacent_5p upward } 0 19 {A19R:G -> A18R:G: adjacent_3p downward } 0 20 {A19R:G -> A20R:C: adjacent_5p upward } 0 21 {A20R:C -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:C 0 2 A12R:G 0 3 A13R:C 0 4 B12R:G 0 5 B13R:C 0 6 B14R:G 0 7 B15R:C 0 [Edges] 0 {A10R:G -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:C -> A12R:G: adjacent_5p } 0 5 {A12R:G -> A11R:C: adjacent_3p } 0 6 {A11R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B14R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> A13R:C: adjacent_5p upward } 0 9 {A13R:C -> A12R:G: adjacent_3p downward } 0 10 {A12R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B13R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:G -> B14R:G: outward } 0 13 {B14R:G -> A12R:G: outward } 0 14 {A13R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B12R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B12R:G -> B13R:C: adjacent_5p upward } 0 17 {B13R:C -> B12R:G: adjacent_3p downward } 0 18 {B13R:C -> B14R:G: adjacent_5p upward } 0 19 {B14R:G -> B13R:C: adjacent_3p downward } 0 20 {B14R:G -> B15R:C: adjacent_5p upward } 0 21 {B15R:C -> B14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:G 0 2 A13R:C 0 3 A14R:G 0 4 B11R:C 0 5 B12R:G 0 6 B13R:C 0 7 B14R:G 0 [Edges] 0 {A11R:C -> A12R:G: adjacent_5p } 0 1 {A12R:G -> A11R:C: adjacent_3p } 0 2 {A11R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B14R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:G -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B13R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> B14R:G: outward } 0 9 {B14R:G -> A12R:G: outward } 0 10 {A13R:C -> A14R:G: adjacent_5p upward } 0 11 {A14R:G -> A13R:C: adjacent_3p downward } 0 12 {A13R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B12R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B11R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A14R:G -> B12R:G: outward } 0 17 {B12R:G -> A14R:G: outward } 0 18 {B11R:C -> B12R:G: adjacent_5p } 0 19 {B12R:G -> B11R:C: adjacent_3p } 0 20 {B12R:G -> B13R:C: adjacent_5p upward } 0 21 {B13R:C -> B12R:G: adjacent_3p downward } 0 22 {B13R:C -> B14R:G: adjacent_5p upward } 0 23 {B14R:G -> B13R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:C 0 2 A14R:G 0 3 A15R:C 0 4 B10R:G 0 5 B11R:C 0 6 B12R:G 0 7 B13R:C 0 [Edges] 0 {A12R:G -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B13R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:C -> A14R:G: adjacent_5p upward } 0 5 {A14R:G -> A13R:C: adjacent_3p downward } 0 6 {A13R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:G -> A15R:C: adjacent_5p upward } 0 9 {A15R:C -> A14R:G: adjacent_3p downward } 0 10 {A14R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B11R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:G -> B12R:G: outward } 0 13 {B12R:G -> A14R:G: outward } 0 14 {A15R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B10R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B10R:G -> B11R:C: adjacent_5p upward } 0 17 {B11R:C -> B10R:G: adjacent_3p downward } 0 18 {B11R:C -> B12R:G: adjacent_5p } 0 19 {B12R:G -> B11R:C: adjacent_3p } 0 20 {B12R:G -> B13R:C: adjacent_5p upward } 0 21 {B13R:C -> B12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B2R:U 0 1 B3R:U 0 2 B4R:G 0 3 B5R:C 0 4 B19R:G 0 5 B20R:C 0 6 B21R:A 0 7 B22R:A 0 [Edges] 0 {B2R:U -> B3R:U: adjacent_5p upward } 0 1 {B3R:U -> B2R:U: adjacent_3p downward } 0 2 {B2R:U -> B22R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B22R:A -> B2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B3R:U -> B4R:G: adjacent_5p upward } 0 5 {B4R:G -> B3R:U: adjacent_3p downward } 0 6 {B3R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B21R:A -> B3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B4R:G -> B5R:C: adjacent_5p upward } 0 9 {B5R:C -> B4R:G: adjacent_3p downward } 0 10 {B4R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B20R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B4R:G -> B21R:A: outward } 0 13 {B21R:A -> B4R:G: outward } 0 14 {B5R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B19R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B19R:G -> B20R:C: adjacent_5p upward } 0 17 {B20R:C -> B19R:G: adjacent_3p downward } 0 18 {B20R:C -> B21R:A: adjacent_5p upward } 0 19 {B21R:A -> B20R:C: adjacent_3p downward } 0 20 {B21R:A -> B22R:A: adjacent_5p upward } 0 21 {B22R:A -> B21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B3R:U 0 1 B4R:G 0 2 B5R:C 0 3 B6R:U 0 4 B18R:G 0 5 B19R:G 0 6 B20R:C 0 7 B21R:A 0 [Edges] 0 {B3R:U -> B4R:G: adjacent_5p upward } 0 1 {B4R:G -> B3R:U: adjacent_3p downward } 0 2 {B3R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B21R:A -> B3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B4R:G -> B5R:C: adjacent_5p upward } 0 5 {B5R:C -> B4R:G: adjacent_3p downward } 0 6 {B4R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B20R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B4R:G -> B21R:A: outward } 0 9 {B21R:A -> B4R:G: outward } 0 10 {B5R:C -> B6R:U: adjacent_5p upward } 0 11 {B6R:U -> B5R:C: adjacent_3p downward } 0 12 {B5R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B19R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B6R:U -> B18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {B18R:G -> B6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {B18R:G -> B19R:G: adjacent_5p upward } 0 17 {B19R:G -> B18R:G: adjacent_3p downward } 0 18 {B19R:G -> B20R:C: adjacent_5p upward } 0 19 {B20R:C -> B19R:G: adjacent_3p downward } 0 20 {B20R:C -> B21R:A: adjacent_5p upward } 0 21 {B21R:A -> B20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B4R:G 0 1 B5R:C 0 2 B6R:U 0 3 B7R:G 0 4 B17R:C 0 5 B18R:G 0 6 B19R:G 0 7 B20R:C 0 [Edges] 0 {B4R:G -> B5R:C: adjacent_5p upward } 0 1 {B5R:C -> B4R:G: adjacent_3p downward } 0 2 {B4R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B20R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B5R:C -> B6R:U: adjacent_5p upward } 0 5 {B6R:U -> B5R:C: adjacent_3p downward } 0 6 {B5R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B19R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B6R:U -> B7R:G: adjacent_5p } 0 9 {B7R:G -> B6R:U: adjacent_3p } 0 10 {B6R:U -> B18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B18R:G -> B6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {B7R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B17R:C -> B7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B7R:G -> B18R:G: outward } 0 15 {B18R:G -> B7R:G: outward } 0 16 {B17R:C -> B18R:G: adjacent_5p } 0 17 {B18R:G -> B17R:C: adjacent_3p } 0 18 {B18R:G -> B19R:G: adjacent_5p upward } 0 19 {B19R:G -> B18R:G: adjacent_3p downward } 0 20 {B19R:G -> B20R:C: adjacent_5p upward } 0 21 {B20R:C -> B19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:U 0 1 A3R:U 0 2 A4R:G 0 3 A5R:C 0 4 A19R:G 0 5 A20R:C 0 6 A21R:A 0 7 A22R:A 0 [Edges] 0 {A2R:U -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:U: adjacent_3p downward } 0 2 {A2R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A22R:A -> A2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A21R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A21R:A: outward } 0 13 {A21R:A -> A4R:G: outward } 0 14 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A19R:G -> A20R:C: adjacent_5p upward } 0 17 {A20R:C -> A19R:G: adjacent_3p downward } 0 18 {A20R:C -> A21R:A: adjacent_5p upward } 0 19 {A21R:A -> A20R:C: adjacent_3p downward } 0 20 {A21R:A -> A22R:A: adjacent_5p upward } 0 21 {A22R:A -> A21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:C 0 3 A6R:U 0 4 A18R:A 0 5 A19R:G 0 6 A20R:C 0 7 A21R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A21R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A21R:A: outward } 0 9 {A21R:A -> A4R:G: outward } 0 10 {A5R:C -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:C: adjacent_3p downward } 0 12 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A18R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A18R:A -> A19R:G: adjacent_5p upward } 0 17 {A19R:G -> A18R:A: adjacent_3p downward } 0 18 {A19R:G -> A20R:C: adjacent_5p upward } 0 19 {A20R:C -> A19R:G: adjacent_3p downward } 0 20 {A20R:C -> A21R:A: adjacent_5p upward } 0 21 {A21R:A -> A20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:C 0 2 A6R:U 0 3 A7R:G 0 4 A17R:C 0 5 A18R:A 0 6 A19R:G 0 7 A20R:C 0 [Edges] 0 {A4R:G -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:U -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:U: adjacent_3p downward } 0 10 {A6R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A18R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:G -> A18R:A: outward } 0 15 {A18R:A -> A7R:G: outward } 0 16 {A17R:C -> A18R:A: adjacent_5p upward } 0 17 {A18R:A -> A17R:C: adjacent_3p downward } 0 18 {A18R:A -> A19R:G: adjacent_5p upward } 0 19 {A19R:G -> A18R:A: adjacent_3p downward } 0 20 {A19R:G -> A20R:C: adjacent_5p upward } 0 21 {A20R:C -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:U 0 2 A12R:G 0 3 A13R:C 0 4 B12R:G 0 5 B13R:C 0 6 B14R:A 0 7 B15R:C 0 [Edges] 0 {A10R:G -> A11R:U: adjacent_5p upward } 0 1 {A11R:U -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:U -> A12R:G: adjacent_5p } 0 5 {A12R:G -> A11R:U: adjacent_3p } 0 6 {A11R:U -> B14R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B14R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A12R:G -> A13R:C: adjacent_5p upward } 0 9 {A13R:C -> A12R:G: adjacent_3p downward } 0 10 {A12R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B13R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:G -> B14R:A: outward } 0 13 {B14R:A -> A12R:G: outward } 0 14 {A13R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B12R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B12R:G -> B13R:C: adjacent_5p upward } 0 17 {B13R:C -> B12R:G: adjacent_3p downward } 0 18 {B13R:C -> B14R:A: adjacent_5p upward } 0 19 {B14R:A -> B13R:C: adjacent_3p downward } 0 20 {B14R:A -> B15R:C: adjacent_5p upward } 0 21 {B15R:C -> B14R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:G 0 2 A13R:C 0 3 A14R:A 0 4 B11R:U 0 5 B12R:G 0 6 B13R:C 0 7 B14R:A 0 [Edges] 0 {A11R:U -> A12R:G: adjacent_5p } 0 1 {A12R:G -> A11R:U: adjacent_3p } 0 2 {A11R:U -> B14R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B14R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A12R:G -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B13R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> B14R:A: outward } 0 9 {B14R:A -> A12R:G: outward } 0 10 {A13R:C -> A14R:A: adjacent_5p upward } 0 11 {A14R:A -> A13R:C: adjacent_3p downward } 0 12 {A13R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B12R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:A -> B11R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B11R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A14R:A -> B12R:G: outward } 0 17 {B12R:G -> A14R:A: outward } 0 18 {B11R:U -> B12R:G: adjacent_5p } 0 19 {B12R:G -> B11R:U: adjacent_3p } 0 20 {B12R:G -> B13R:C: adjacent_5p upward } 0 21 {B13R:C -> B12R:G: adjacent_3p downward } 0 22 {B13R:C -> B14R:A: adjacent_5p upward } 0 23 {B14R:A -> B13R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:C 0 2 A14R:A 0 3 A15R:C 0 4 B10R:G 0 5 B11R:U 0 6 B12R:G 0 7 B13R:C 0 [Edges] 0 {A12R:G -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B13R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:C -> A14R:A: adjacent_5p upward } 0 5 {A14R:A -> A13R:C: adjacent_3p downward } 0 6 {A13R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:A -> A15R:C: adjacent_5p upward } 0 9 {A15R:C -> A14R:A: adjacent_3p downward } 0 10 {A14R:A -> B11R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B11R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A14R:A -> B12R:G: outward } 0 13 {B12R:G -> A14R:A: outward } 0 14 {A15R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B10R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B10R:G -> B11R:U: adjacent_5p upward } 0 17 {B11R:U -> B10R:G: adjacent_3p downward } 0 18 {B11R:U -> B12R:G: adjacent_5p } 0 19 {B12R:G -> B11R:U: adjacent_3p } 0 20 {B12R:G -> B13R:C: adjacent_5p upward } 0 21 {B13R:C -> B12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B2R:U 0 1 B3R:U 0 2 B4R:G 0 3 B5R:C 0 4 B19R:G 0 5 B20R:C 0 6 B21R:A 0 7 B22R:A 0 [Edges] 0 {B2R:U -> B3R:U: adjacent_5p } 0 1 {B3R:U -> B2R:U: adjacent_3p } 0 2 {B2R:U -> B22R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B22R:A -> B2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B3R:U -> B4R:G: adjacent_5p upward } 0 5 {B4R:G -> B3R:U: adjacent_3p downward } 0 6 {B3R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B21R:A -> B3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B4R:G -> B5R:C: adjacent_5p upward } 0 9 {B5R:C -> B4R:G: adjacent_3p downward } 0 10 {B4R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B20R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B4R:G -> B21R:A: outward } 0 13 {B21R:A -> B4R:G: outward } 0 14 {B5R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B19R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B19R:G -> B20R:C: adjacent_5p upward } 0 17 {B20R:C -> B19R:G: adjacent_3p downward } 0 18 {B20R:C -> B21R:A: adjacent_5p upward } 0 19 {B21R:A -> B20R:C: adjacent_3p downward } 0 20 {B21R:A -> B22R:A: adjacent_5p upward } 0 21 {B22R:A -> B21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B3R:U 0 1 B4R:G 0 2 B5R:C 0 3 B6R:U 0 4 B18R:A 0 5 B19R:G 0 6 B20R:C 0 7 B21R:A 0 [Edges] 0 {B3R:U -> B4R:G: adjacent_5p upward } 0 1 {B4R:G -> B3R:U: adjacent_3p downward } 0 2 {B3R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B21R:A -> B3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B4R:G -> B5R:C: adjacent_5p upward } 0 5 {B5R:C -> B4R:G: adjacent_3p downward } 0 6 {B4R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B20R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B4R:G -> B21R:A: outward } 0 9 {B21R:A -> B4R:G: outward } 0 10 {B5R:C -> B6R:U: adjacent_5p upward } 0 11 {B6R:U -> B5R:C: adjacent_3p downward } 0 12 {B5R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B19R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B6R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B18R:A -> B6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B18R:A -> B19R:G: adjacent_5p upward } 0 17 {B19R:G -> B18R:A: adjacent_3p downward } 0 18 {B19R:G -> B20R:C: adjacent_5p upward } 0 19 {B20R:C -> B19R:G: adjacent_3p downward } 0 20 {B20R:C -> B21R:A: adjacent_5p upward } 0 21 {B21R:A -> B20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B4R:G 0 1 B5R:C 0 2 B6R:U 0 3 B7R:G 0 4 B17R:C 0 5 B18R:A 0 6 B19R:G 0 7 B20R:C 0 [Edges] 0 {B4R:G -> B5R:C: adjacent_5p upward } 0 1 {B5R:C -> B4R:G: adjacent_3p downward } 0 2 {B4R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B20R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B5R:C -> B6R:U: adjacent_5p upward } 0 5 {B6R:U -> B5R:C: adjacent_3p downward } 0 6 {B5R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B19R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B6R:U -> B7R:G: adjacent_5p } 0 9 {B7R:G -> B6R:U: adjacent_3p } 0 10 {B6R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B18R:A -> B6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B7R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B17R:C -> B7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B7R:G -> B18R:A: outward } 0 15 {B18R:A -> B7R:G: outward } 0 16 {B17R:C -> B18R:A: adjacent_5p upward } 0 17 {B18R:A -> B17R:C: adjacent_3p downward } 0 18 {B18R:A -> B19R:G: adjacent_5p upward } 0 19 {B19R:G -> B18R:A: adjacent_3p downward } 0 20 {B19R:G -> B20R:C: adjacent_5p upward } 0 21 {B20R:C -> B19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:A 0 3 A5R:G 0 4 A23R:C 0 5 A24R:U 0 6 A25R:U 0 7 A26R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p } 0 1 {A3R:A -> A2R:G: adjacent_3p } 0 2 {A2R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A26R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A25R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A25R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A24R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A23R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A23R:C -> A24R:U: adjacent_5p } 0 15 {A24R:U -> A23R:C: adjacent_3p } 0 16 {A24R:U -> A25R:U: adjacent_5p } 0 17 {A25R:U -> A24R:U: adjacent_3p } 0 18 {A25R:U -> A26R:C: adjacent_5p upward } 0 19 {A26R:C -> A25R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:C 0 2 A8R:C 0 3 A9R:G 0 4 A20R:C 0 5 A21R:G 0 6 A22R:G 0 7 A23R:C 0 [Edges] 0 {A6R:A -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> A23R:C: pairing antiparallel trans one_hbond Bh/Bs } 0 3 {A23R:C -> A6R:A: pairing antiparallel trans one_hbond Bs/Bh } 0 4 {A7R:C -> A8R:C: adjacent_5p } 0 5 {A8R:C -> A7R:C: adjacent_3p } 0 6 {A7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:C -> A9R:G: adjacent_5p } 0 9 {A9R:G -> A8R:C: adjacent_3p } 0 10 {A8R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A21R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A9R:G -> A21R:G: outward } 0 15 {A21R:G -> A9R:G: outward } 0 16 {A20R:C -> A21R:G: adjacent_5p upward } 0 17 {A21R:G -> A20R:C: adjacent_3p downward } 0 18 {A21R:G -> A22R:G: adjacent_5p } 0 19 {A22R:G -> A21R:G: adjacent_3p } 0 20 {A22R:G -> A23R:C: adjacent_5p upward } 0 21 {A23R:C -> A22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:C 0 2 A9R:G 0 3 A10R:G 0 4 A19R:C 0 5 A20R:C 0 6 A21R:G 0 7 A22R:G 0 [Edges] 0 {A7R:C -> A8R:C: adjacent_5p } 0 1 {A8R:C -> A7R:C: adjacent_3p } 0 2 {A7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:C -> A9R:G: adjacent_5p } 0 5 {A9R:G -> A8R:C: adjacent_3p } 0 6 {A8R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:G -> A21R:G: outward } 0 13 {A21R:G -> A9R:G: outward } 0 14 {A10R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A19R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A19R:C -> A20R:C: adjacent_5p } 0 17 {A20R:C -> A19R:C: adjacent_3p } 0 18 {A20R:C -> A21R:G: adjacent_5p upward } 0 19 {A21R:G -> A20R:C: adjacent_3p downward } 0 20 {A21R:G -> A22R:G: adjacent_5p } 0 21 {A22R:G -> A21R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:G 0 2 A10R:G 0 3 A11R:U 0 4 A18R:A 0 5 A19R:C 0 6 A20R:C 0 7 A21R:G 0 [Edges] 0 {A8R:C -> A9R:G: adjacent_5p } 0 1 {A9R:G -> A8R:C: adjacent_3p } 0 2 {A8R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:G -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> A21R:G: outward } 0 9 {A21R:G -> A9R:G: outward } 0 10 {A10R:G -> A11R:U: adjacent_5p } 0 11 {A11R:U -> A10R:G: adjacent_3p } 0 12 {A10R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A11R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A18R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A18R:A -> A19R:C: adjacent_5p upward } 0 17 {A19R:C -> A18R:A: adjacent_3p downward } 0 18 {A19R:C -> A20R:C: adjacent_5p } 0 19 {A20R:C -> A19R:C: adjacent_3p } 0 20 {A20R:C -> A21R:G: adjacent_5p upward } 0 21 {A21R:G -> A20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:G 0 2 A11R:U 0 3 A12R:C 0 4 A17R:G 0 5 A18R:A 0 6 A19R:C 0 7 A20R:C 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:G -> A11R:U: adjacent_5p } 0 5 {A11R:U -> A10R:G: adjacent_3p } 0 6 {A10R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:U -> A12R:C: adjacent_5p upward } 0 9 {A12R:C -> A11R:U: adjacent_3p downward } 0 10 {A11R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A18R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A12R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A17R:G -> A18R:A: adjacent_5p } 0 15 {A18R:A -> A17R:G: adjacent_3p } 0 16 {A18R:A -> A19R:C: adjacent_5p upward } 0 17 {A19R:C -> A18R:A: adjacent_3p downward } 0 18 {A19R:C -> A20R:C: adjacent_5p } 0 19 {A20R:C -> A19R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:U 0 2 A12R:C 0 3 A13R:U 0 4 A16R:G 0 5 A17R:G 0 6 A18R:A 0 7 A19R:C 0 [Edges] 0 {A10R:G -> A11R:U: adjacent_5p } 0 1 {A11R:U -> A10R:G: adjacent_3p } 0 2 {A10R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:U -> A12R:C: adjacent_5p upward } 0 5 {A12R:C -> A11R:U: adjacent_3p downward } 0 6 {A11R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A18R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A12R:C -> A13R:U: adjacent_5p upward } 0 9 {A13R:U -> A12R:C: adjacent_3p downward } 0 10 {A12R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:U -> A16R:G: pairing parallel trans one_hbond Bs/Ww } 0 13 {A16R:G -> A13R:U: pairing parallel trans one_hbond Ww/Bs } 0 14 {A16R:G -> A17R:G: adjacent_5p outward } 0 15 {A17R:G -> A16R:G: adjacent_3p outward } 0 16 {A17R:G -> A18R:A: adjacent_5p } 0 17 {A18R:A -> A17R:G: adjacent_3p } 0 18 {A18R:A -> A19R:C: adjacent_5p upward } 0 19 {A19R:C -> A18R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:A 0 3 A5R:G 0 4 A23R:C 0 5 A24R:U 0 6 A25R:U 0 7 A26R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A26R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A25R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A25R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A24R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A23R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A23R:C -> A24R:U: adjacent_5p upward } 0 15 {A24R:U -> A23R:C: adjacent_3p downward } 0 16 {A24R:U -> A25R:U: adjacent_5p } 0 17 {A25R:U -> A24R:U: adjacent_3p } 0 18 {A25R:U -> A26R:C: adjacent_5p } 0 19 {A26R:C -> A25R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:A 0 2 A5R:G 0 3 A6R:C 0 4 A22R:G 0 5 A23R:C 0 6 A24R:U 0 7 A25R:U 0 [Edges] 0 {A3R:A -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A25R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A25R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:A -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A24R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:G -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A23R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A22R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A22R:G -> A23R:C: adjacent_5p } 0 15 {A23R:C -> A22R:G: adjacent_3p } 0 16 {A23R:C -> A24R:U: adjacent_5p upward } 0 17 {A24R:U -> A23R:C: adjacent_3p downward } 0 18 {A24R:U -> A25R:U: adjacent_5p } 0 19 {A25R:U -> A24R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:G 0 2 A10R:G 0 3 A11R:U 0 4 A18R:A 0 5 A19R:C 0 6 A20R:C 0 7 A21R:G 0 [Edges] 0 {A8R:C -> A9R:G: adjacent_5p } 0 1 {A9R:G -> A8R:C: adjacent_3p } 0 2 {A8R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:G -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:G -> A11R:U: adjacent_5p } 0 9 {A11R:U -> A10R:G: adjacent_3p } 0 10 {A10R:G -> A19R:C: pairing antiparallel cis Ww/Ww } 0 11 {A19R:C -> A10R:G: pairing antiparallel cis Ww/Ww } 0 12 {A11R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A18R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A18R:A -> A19R:C: adjacent_5p } 0 15 {A19R:C -> A18R:A: adjacent_3p } 0 16 {A19R:C -> A20R:C: adjacent_5p } 0 17 {A20R:C -> A19R:C: adjacent_3p } 0 18 {A20R:C -> A21R:G: adjacent_5p upward } 0 19 {A21R:G -> A20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:G 0 2 A11R:U 0 3 A12R:C 0 4 A17R:G 0 5 A18R:A 0 6 A19R:C 0 7 A20R:C 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:G -> A11R:U: adjacent_5p } 0 5 {A11R:U -> A10R:G: adjacent_3p } 0 6 {A10R:G -> A19R:C: pairing antiparallel cis Ww/Ww } 0 7 {A19R:C -> A10R:G: pairing antiparallel cis Ww/Ww } 0 8 {A11R:U -> A12R:C: adjacent_5p } 0 9 {A12R:C -> A11R:U: adjacent_3p } 0 10 {A11R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A18R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A12R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A17R:G -> A18R:A: adjacent_5p upward } 0 15 {A18R:A -> A17R:G: adjacent_3p downward } 0 16 {A18R:A -> A19R:C: adjacent_5p } 0 17 {A19R:C -> A18R:A: adjacent_3p } 0 18 {A19R:C -> A20R:C: adjacent_5p } 0 19 {A20R:C -> A19R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:U 0 2 A12R:C 0 3 A13R:U 0 4 A16R:G 0 5 A17R:G 0 6 A18R:A 0 7 A19R:C 0 [Edges] 0 {A10R:G -> A11R:U: adjacent_5p } 0 1 {A11R:U -> A10R:G: adjacent_3p } 0 2 {A10R:G -> A19R:C: pairing antiparallel cis Ww/Ww } 0 3 {A19R:C -> A10R:G: pairing antiparallel cis Ww/Ww } 0 4 {A11R:U -> A12R:C: adjacent_5p } 0 5 {A12R:C -> A11R:U: adjacent_3p } 0 6 {A11R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A18R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A12R:C -> A13R:U: adjacent_5p upward } 0 9 {A13R:U -> A12R:C: adjacent_3p downward } 0 10 {A12R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:U -> A16R:G: pairing parallel trans one_hbond Bs/Ww } 0 13 {A16R:G -> A13R:U: pairing parallel trans one_hbond Ww/Bs } 0 14 {A16R:G -> A17R:G: adjacent_5p outward } 0 15 {A17R:G -> A16R:G: adjacent_3p outward } 0 16 {A17R:G -> A18R:A: adjacent_5p upward } 0 17 {A18R:A -> A17R:G: adjacent_3p downward } 0 18 {A18R:A -> A19R:C: adjacent_5p } 0 19 {A19R:C -> A18R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:G 0 3 A6R:A 0 4 B14R:G 0 5 B15R:A 0 6 B16R:A 0 7 B17R:G 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> B17R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B17R:G -> A3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A4R:G -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B16R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {B16R:A -> A4R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {A5R:G -> A6R:A: adjacent_5p } 0 9 {A6R:A -> A5R:G: adjacent_3p } 0 10 {A5R:G -> B14R:G: inward } 0 11 {B14R:G -> A5R:G: inward } 0 12 {A6R:A -> B14R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {B14R:G -> A6R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {A6R:A -> B15R:A: outward } 0 15 {B15R:A -> A6R:A: outward } 0 16 {B14R:G -> B15R:A: adjacent_5p } 0 17 {B15R:A -> B14R:G: adjacent_3p } 0 18 {B15R:A -> B16R:A: adjacent_5p upward } 0 19 {B16R:A -> B15R:A: adjacent_3p downward } 0 20 {B16R:A -> B17R:G: adjacent_5p upward } 0 21 {B17R:G -> B16R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 . . . 3 . . 9 . 12 14 . . 4 . . 11 13 . 16 . . 5 . . . 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:G 0 2 A6R:A 0 3 A7R:G 0 4 B13R:C 0 5 B14R:G 0 6 B15R:A 0 7 B16R:A 0 [Edges] 0 {A4R:G -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B16R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {B16R:A -> A4R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {A5R:G -> A6R:A: adjacent_5p } 0 5 {A6R:A -> A5R:G: adjacent_3p } 0 6 {A5R:G -> B14R:G: inward } 0 7 {B14R:G -> A5R:G: inward } 0 8 {A6R:A -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:A: adjacent_3p downward } 0 10 {A6R:A -> B14R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {B14R:G -> A6R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {A6R:A -> B15R:A: outward } 0 13 {B15R:A -> A6R:A: outward } 0 14 {A7R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B13R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B13R:C -> B14R:G: adjacent_5p upward } 0 17 {B14R:G -> B13R:C: adjacent_3p downward } 0 18 {B14R:G -> B15R:A: adjacent_5p } 0 19 {B15R:A -> B14R:G: adjacent_3p } 0 20 {B15R:A -> B16R:A: adjacent_5p upward } 0 21 {B16R:A -> B15R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 . . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . 7 11 . 17 . 18 . 6 . . 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:G 0 3 A5R:A 0 4 A10R:A 0 5 A11R:C 0 6 A12R:U 0 7 A13R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A13R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A12R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A11R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:A -> A10R:A: pairing antiparallel trans 41 Ss/Hh } 0 13 {A10R:A -> A5R:A: pairing antiparallel trans 41 Hh/Ss } 0 14 {A10R:A -> A11R:C: adjacent_5p upward } 0 15 {A11R:C -> A10R:A: adjacent_3p downward } 0 16 {A11R:C -> A12R:U: adjacent_5p upward } 0 17 {A12R:U -> A11R:C: adjacent_3p downward } 0 18 {A12R:U -> A13R:C: adjacent_5p } 0 19 {A13R:C -> A12R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:A 0 3 A5R:A 0 4 A11R:A 0 5 A12R:U 0 6 A13R:U 0 7 A14R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A14R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A13R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A12R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:A -> A11R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 13 {A11R:A -> A5R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 14 {A11R:A -> A12R:U: adjacent_5p upward } 0 15 {A12R:U -> A11R:A: adjacent_3p downward } 0 16 {A12R:U -> A13R:U: adjacent_5p upward } 0 17 {A13R:U -> A12R:U: adjacent_3p downward } 0 18 {A13R:U -> A14R:C: adjacent_5p upward } 0 19 {A14R:C -> A13R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:A 0 2 A5R:A 0 3 A6R:C 0 4 A10R:G 0 5 A11R:A 0 6 A12R:U 0 7 A13R:U 0 [Edges] 0 {A3R:A -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A13R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:A -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A12R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:A -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> A11R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 11 {A11R:A -> A5R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 12 {A6R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A10R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A10R:G -> A11R:A: adjacent_5p upward } 0 15 {A11R:A -> A10R:G: adjacent_3p downward } 0 16 {A11R:A -> A12R:U: adjacent_5p upward } 0 17 {A12R:U -> A11R:A: adjacent_3p downward } 0 18 {A12R:U -> A13R:U: adjacent_5p upward } 0 19 {A13R:U -> A12R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 X14R:G 0 1 X15R:C 0 2 X16R:U 0 3 X17R:U 0 4 X79R:A 0 5 X80R:A 0 6 X81R:G 0 7 X82R:U 0 [Edges] 0 {X14R:G -> X15R:C: adjacent_5p upward } 0 1 {X15R:C -> X14R:G: adjacent_3p downward } 0 2 {X14R:G -> X82R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {X82R:U -> X14R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {X15R:C -> X16R:U: adjacent_5p upward } 0 5 {X16R:U -> X15R:C: adjacent_3p downward } 0 6 {X15R:C -> X81R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {X81R:G -> X15R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {X16R:U -> X17R:U: adjacent_5p upward } 0 9 {X17R:U -> X16R:U: adjacent_3p downward } 0 10 {X16R:U -> X80R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {X80R:A -> X16R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {X17R:U -> X79R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {X79R:A -> X17R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {X79R:A -> X80R:A: adjacent_5p upward } 0 15 {X80R:A -> X79R:A: adjacent_3p downward } 0 16 {X80R:A -> X81R:G: adjacent_5p upward } 0 17 {X81R:G -> X80R:A: adjacent_3p downward } 0 18 {X81R:G -> X82R:U: adjacent_5p upward } 0 19 {X82R:U -> X81R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 X15R:C 0 1 X16R:U 0 2 X17R:U 0 3 X18R:C 0 4 X78R:G 0 5 X79R:A 0 6 X80R:A 0 7 X81R:G 0 [Edges] 0 {X15R:C -> X16R:U: adjacent_5p upward } 0 1 {X16R:U -> X15R:C: adjacent_3p downward } 0 2 {X15R:C -> X81R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {X81R:G -> X15R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {X16R:U -> X17R:U: adjacent_5p upward } 0 5 {X17R:U -> X16R:U: adjacent_3p downward } 0 6 {X16R:U -> X80R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {X80R:A -> X16R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {X17R:U -> X18R:C: adjacent_5p upward } 0 9 {X18R:C -> X17R:U: adjacent_3p downward } 0 10 {X17R:U -> X79R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {X79R:A -> X17R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {X18R:C -> X78R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {X78R:G -> X18R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {X78R:G -> X79R:A: adjacent_5p upward } 0 15 {X79R:A -> X78R:G: adjacent_3p downward } 0 16 {X79R:A -> X80R:A: adjacent_5p upward } 0 17 {X80R:A -> X79R:A: adjacent_3p downward } 0 18 {X80R:A -> X81R:G: adjacent_5p upward } 0 19 {X81R:G -> X80R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 X16R:U 0 1 X17R:U 0 2 X18R:C 0 3 X19R:A 0 4 X77R:U 0 5 X78R:G 0 6 X79R:A 0 7 X80R:A 0 [Edges] 0 {X16R:U -> X17R:U: adjacent_5p upward } 0 1 {X17R:U -> X16R:U: adjacent_3p downward } 0 2 {X16R:U -> X80R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {X80R:A -> X16R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {X17R:U -> X18R:C: adjacent_5p upward } 0 5 {X18R:C -> X17R:U: adjacent_3p downward } 0 6 {X17R:U -> X79R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {X79R:A -> X17R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {X18R:C -> X19R:A: adjacent_5p } 0 9 {X19R:A -> X18R:C: adjacent_3p } 0 10 {X18R:C -> X78R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {X78R:G -> X18R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {X19R:A -> X77R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {X77R:U -> X19R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {X19R:A -> X78R:G: outward } 0 15 {X78R:G -> X19R:A: outward } 0 16 {X77R:U -> X78R:G: adjacent_5p upward } 0 17 {X78R:G -> X77R:U: adjacent_3p downward } 0 18 {X78R:G -> X79R:A: adjacent_5p upward } 0 19 {X79R:A -> X78R:G: adjacent_3p downward } 0 20 {X79R:A -> X80R:A: adjacent_5p upward } 0 21 {X80R:A -> X79R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 X17R:U 0 1 X18R:C 0 2 X19R:A 0 3 X20R:U 0 4 X76R:A 0 5 X77R:U 0 6 X78R:G 0 7 X79R:A 0 [Edges] 0 {X17R:U -> X18R:C: adjacent_5p upward } 0 1 {X18R:C -> X17R:U: adjacent_3p downward } 0 2 {X17R:U -> X79R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {X79R:A -> X17R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {X18R:C -> X19R:A: adjacent_5p } 0 5 {X19R:A -> X18R:C: adjacent_3p } 0 6 {X18R:C -> X78R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {X78R:G -> X18R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {X19R:A -> X20R:U: adjacent_5p upward } 0 9 {X20R:U -> X19R:A: adjacent_3p downward } 0 10 {X19R:A -> X77R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {X77R:U -> X19R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {X19R:A -> X78R:G: outward } 0 13 {X78R:G -> X19R:A: outward } 0 14 {X20R:U -> X76R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {X76R:A -> X20R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {X76R:A -> X77R:U: adjacent_5p upward } 0 17 {X77R:U -> X76R:A: adjacent_3p downward } 0 18 {X77R:U -> X78R:G: adjacent_5p upward } 0 19 {X78R:G -> X77R:U: adjacent_3p downward } 0 20 {X78R:G -> X79R:A: adjacent_5p upward } 0 21 {X79R:A -> X78R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 X18R:C 0 1 X19R:A 0 2 X20R:U 0 3 X21R:A 0 4 X75R:U 0 5 X76R:A 0 6 X77R:U 0 7 X78R:G 0 [Edges] 0 {X18R:C -> X19R:A: adjacent_5p } 0 1 {X19R:A -> X18R:C: adjacent_3p } 0 2 {X18R:C -> X78R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {X78R:G -> X18R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {X19R:A -> X20R:U: adjacent_5p upward } 0 5 {X20R:U -> X19R:A: adjacent_3p downward } 0 6 {X19R:A -> X77R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {X77R:U -> X19R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {X19R:A -> X78R:G: outward } 0 9 {X78R:G -> X19R:A: outward } 0 10 {X20R:U -> X21R:A: adjacent_5p upward } 0 11 {X21R:A -> X20R:U: adjacent_3p downward } 0 12 {X20R:U -> X76R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {X76R:A -> X20R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {X21R:A -> X75R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {X75R:U -> X21R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {X21R:A -> X76R:A: outward } 0 17 {X76R:A -> X21R:A: outward } 0 18 {X75R:U -> X76R:A: adjacent_5p upward } 0 19 {X76R:A -> X75R:U: adjacent_3p downward } 0 20 {X76R:A -> X77R:U: adjacent_5p upward } 0 21 {X77R:U -> X76R:A: adjacent_3p downward } 0 22 {X77R:U -> X78R:G: adjacent_5p upward } 0 23 {X78R:G -> X77R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 X25R:U 0 1 X26R:C 0 2 X27R:C 0 3 X28R:U 0 4 X42R:G 0 5 X43R:G 0 6 X44R:G 0 7 X45R:A 0 [Edges] 0 {X25R:U -> X26R:C: adjacent_5p upward } 0 1 {X26R:C -> X25R:U: adjacent_3p downward } 0 2 {X25R:U -> X45R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {X45R:A -> X25R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {X26R:C -> X27R:C: adjacent_5p } 0 5 {X27R:C -> X26R:C: adjacent_3p } 0 6 {X26R:C -> X44R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {X44R:G -> X26R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {X27R:C -> X28R:U: adjacent_5p upward } 0 9 {X28R:U -> X27R:C: adjacent_3p downward } 0 10 {X27R:C -> X43R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {X43R:G -> X27R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {X28R:U -> X42R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {X42R:G -> X28R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {X42R:G -> X43R:G: adjacent_5p upward } 0 15 {X43R:G -> X42R:G: adjacent_3p downward } 0 16 {X43R:G -> X44R:G: adjacent_5p upward } 0 17 {X44R:G -> X43R:G: adjacent_3p downward } 0 18 {X44R:G -> X45R:A: adjacent_5p upward } 0 19 {X45R:A -> X44R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 X26R:C 0 1 X27R:C 0 2 X28R:U 0 3 X29R:A 0 4 X41R:U 0 5 X42R:G 0 6 X43R:G 0 7 X44R:G 0 [Edges] 0 {X26R:C -> X27R:C: adjacent_5p } 0 1 {X27R:C -> X26R:C: adjacent_3p } 0 2 {X26R:C -> X44R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {X44R:G -> X26R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {X27R:C -> X28R:U: adjacent_5p upward } 0 5 {X28R:U -> X27R:C: adjacent_3p downward } 0 6 {X27R:C -> X43R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {X43R:G -> X27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {X28R:U -> X29R:A: adjacent_5p } 0 9 {X29R:A -> X28R:U: adjacent_3p } 0 10 {X28R:U -> X42R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {X42R:G -> X28R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {X29R:A -> X41R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {X41R:U -> X29R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {X29R:A -> X42R:G: outward } 0 15 {X42R:G -> X29R:A: outward } 0 16 {X41R:U -> X42R:G: adjacent_5p } 0 17 {X42R:G -> X41R:U: adjacent_3p } 0 18 {X42R:G -> X43R:G: adjacent_5p upward } 0 19 {X43R:G -> X42R:G: adjacent_3p downward } 0 20 {X43R:G -> X44R:G: adjacent_5p upward } 0 21 {X44R:G -> X43R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 X27R:C 0 1 X28R:U 0 2 X29R:A 0 3 X30R:A 0 4 X40R:U 0 5 X41R:U 0 6 X42R:G 0 7 X43R:G 0 [Edges] 0 {X27R:C -> X28R:U: adjacent_5p upward } 0 1 {X28R:U -> X27R:C: adjacent_3p downward } 0 2 {X27R:C -> X43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {X43R:G -> X27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {X28R:U -> X29R:A: adjacent_5p } 0 5 {X29R:A -> X28R:U: adjacent_3p } 0 6 {X28R:U -> X42R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {X42R:G -> X28R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {X29R:A -> X30R:A: adjacent_5p upward } 0 9 {X30R:A -> X29R:A: adjacent_3p downward } 0 10 {X29R:A -> X41R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {X41R:U -> X29R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {X29R:A -> X42R:G: outward } 0 13 {X42R:G -> X29R:A: outward } 0 14 {X30R:A -> X40R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {X40R:U -> X30R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {X40R:U -> X41R:U: adjacent_5p } 0 17 {X41R:U -> X40R:U: adjacent_3p } 0 18 {X41R:U -> X42R:G: adjacent_5p } 0 19 {X42R:G -> X41R:U: adjacent_3p } 0 20 {X42R:G -> X43R:G: adjacent_5p upward } 0 21 {X43R:G -> X42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 X28R:U 0 1 X29R:A 0 2 X30R:A 0 3 X31R:U 0 4 X39R:U 0 5 X40R:U 0 6 X41R:U 0 7 X42R:G 0 [Edges] 0 {X28R:U -> X29R:A: adjacent_5p } 0 1 {X29R:A -> X28R:U: adjacent_3p } 0 2 {X28R:U -> X42R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {X42R:G -> X28R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {X29R:A -> X30R:A: adjacent_5p upward } 0 5 {X30R:A -> X29R:A: adjacent_3p downward } 0 6 {X29R:A -> X41R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {X41R:U -> X29R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {X29R:A -> X42R:G: outward } 0 9 {X42R:G -> X29R:A: outward } 0 10 {X30R:A -> X31R:U: adjacent_5p upward } 0 11 {X31R:U -> X30R:A: adjacent_3p downward } 0 12 {X30R:A -> X40R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {X40R:U -> X30R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {X31R:U -> X39R:U: pairing antiparallel cis XVI Ws/Ww } 0 15 {X39R:U -> X31R:U: pairing antiparallel cis XVI Ww/Ws } 0 16 {X39R:U -> X40R:U: adjacent_5p upward } 0 17 {X40R:U -> X39R:U: adjacent_3p downward } 0 18 {X40R:U -> X41R:U: adjacent_5p } 0 19 {X41R:U -> X40R:U: adjacent_3p } 0 20 {X41R:U -> X42R:G: adjacent_5p } 0 21 {X42R:G -> X41R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 X54R:C 0 1 X55R:A 0 2 X56R:A 0 3 X57R:G 0 4 X69R:C 0 5 X70R:U 0 6 X71R:U 0 7 X72R:G 0 [Edges] 0 {X54R:C -> X55R:A: adjacent_5p upward } 0 1 {X55R:A -> X54R:C: adjacent_3p downward } 0 2 {X54R:C -> X72R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {X72R:G -> X54R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {X55R:A -> X56R:A: adjacent_5p upward } 0 5 {X56R:A -> X55R:A: adjacent_3p downward } 0 6 {X55R:A -> X71R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {X71R:U -> X55R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {X55R:A -> X72R:G: outward } 0 9 {X72R:G -> X55R:A: outward } 0 10 {X56R:A -> X57R:G: adjacent_5p upward } 0 11 {X57R:G -> X56R:A: adjacent_3p downward } 0 12 {X56R:A -> X70R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {X70R:U -> X56R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {X57R:G -> X69R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {X69R:C -> X57R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {X69R:C -> X70R:U: adjacent_5p upward } 0 17 {X70R:U -> X69R:C: adjacent_3p downward } 0 18 {X70R:U -> X71R:U: adjacent_5p upward } 0 19 {X71R:U -> X70R:U: adjacent_3p downward } 0 20 {X71R:U -> X72R:G: adjacent_5p upward } 0 21 {X72R:G -> X71R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 X55R:A 0 1 X56R:A 0 2 X57R:G 0 3 X58R:A 0 4 X68R:U 0 5 X69R:C 0 6 X70R:U 0 7 X71R:U 0 [Edges] 0 {X55R:A -> X56R:A: adjacent_5p upward } 0 1 {X56R:A -> X55R:A: adjacent_3p downward } 0 2 {X55R:A -> X71R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {X71R:U -> X55R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {X56R:A -> X57R:G: adjacent_5p upward } 0 5 {X57R:G -> X56R:A: adjacent_3p downward } 0 6 {X56R:A -> X70R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {X70R:U -> X56R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {X57R:G -> X58R:A: adjacent_5p upward } 0 9 {X58R:A -> X57R:G: adjacent_3p downward } 0 10 {X57R:G -> X69R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {X69R:C -> X57R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {X58R:A -> X68R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {X68R:U -> X58R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {X68R:U -> X69R:C: adjacent_5p upward } 0 15 {X69R:C -> X68R:U: adjacent_3p downward } 0 16 {X69R:C -> X70R:U: adjacent_5p upward } 0 17 {X70R:U -> X69R:C: adjacent_3p downward } 0 18 {X70R:U -> X71R:U: adjacent_5p upward } 0 19 {X71R:U -> X70R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 X56R:A 0 1 X57R:G 0 2 X58R:A 0 3 X59R:G 0 4 X67R:C 0 5 X68R:U 0 6 X69R:C 0 7 X70R:U 0 [Edges] 0 {X56R:A -> X57R:G: adjacent_5p upward } 0 1 {X57R:G -> X56R:A: adjacent_3p downward } 0 2 {X56R:A -> X70R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {X70R:U -> X56R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {X57R:G -> X58R:A: adjacent_5p upward } 0 5 {X58R:A -> X57R:G: adjacent_3p downward } 0 6 {X57R:G -> X69R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {X69R:C -> X57R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {X58R:A -> X59R:G: adjacent_5p upward } 0 9 {X59R:G -> X58R:A: adjacent_3p downward } 0 10 {X58R:A -> X68R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {X68R:U -> X58R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {X59R:G -> X67R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {X67R:C -> X59R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {X67R:C -> X68R:U: adjacent_5p upward } 0 15 {X68R:U -> X67R:C: adjacent_3p downward } 0 16 {X68R:U -> X69R:C: adjacent_5p upward } 0 17 {X69R:C -> X68R:U: adjacent_3p downward } 0 18 {X69R:C -> X70R:U: adjacent_5p upward } 0 19 {X70R:U -> X69R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 X15R:G 0 1 X16R:A 0 2 X17R:U 0 3 X18R:C 0 4 X78R:G 0 5 X79R:G 0 6 X80R:U 0 7 X81R:C 0 [Edges] 0 {X15R:G -> X16R:A: adjacent_5p upward } 0 1 {X16R:A -> X15R:G: adjacent_3p downward } 0 2 {X15R:G -> X81R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {X81R:C -> X15R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {X16R:A -> X17R:U: adjacent_5p upward } 0 5 {X17R:U -> X16R:A: adjacent_3p downward } 0 6 {X16R:A -> X80R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {X80R:U -> X16R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {X17R:U -> X18R:C: adjacent_5p } 0 9 {X18R:C -> X17R:U: adjacent_3p } 0 10 {X17R:U -> X79R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {X79R:G -> X17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {X18R:C -> X78R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {X78R:G -> X18R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {X78R:G -> X79R:G: adjacent_5p upward } 0 15 {X79R:G -> X78R:G: adjacent_3p downward } 0 16 {X79R:G -> X80R:U: adjacent_5p upward } 0 17 {X80R:U -> X79R:G: adjacent_3p downward } 0 18 {X80R:U -> X81R:C: adjacent_5p upward } 0 19 {X81R:C -> X80R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 X16R:A 0 1 X17R:U 0 2 X18R:C 0 3 X19R:A 0 4 X77R:U 0 5 X78R:G 0 6 X79R:G 0 7 X80R:U 0 [Edges] 0 {X16R:A -> X17R:U: adjacent_5p upward } 0 1 {X17R:U -> X16R:A: adjacent_3p downward } 0 2 {X16R:A -> X80R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {X80R:U -> X16R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {X17R:U -> X18R:C: adjacent_5p } 0 5 {X18R:C -> X17R:U: adjacent_3p } 0 6 {X17R:U -> X79R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {X79R:G -> X17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {X18R:C -> X19R:A: adjacent_5p } 0 9 {X19R:A -> X18R:C: adjacent_3p } 0 10 {X18R:C -> X78R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {X78R:G -> X18R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {X19R:A -> X77R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {X77R:U -> X19R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {X19R:A -> X78R:G: outward } 0 15 {X78R:G -> X19R:A: outward } 0 16 {X77R:U -> X78R:G: adjacent_5p upward } 0 17 {X78R:G -> X77R:U: adjacent_3p downward } 0 18 {X78R:G -> X79R:G: adjacent_5p upward } 0 19 {X79R:G -> X78R:G: adjacent_3p downward } 0 20 {X79R:G -> X80R:U: adjacent_5p upward } 0 21 {X80R:U -> X79R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 X17R:U 0 1 X18R:C 0 2 X19R:A 0 3 X20R:U 0 4 X76R:A 0 5 X77R:U 0 6 X78R:G 0 7 X79R:G 0 [Edges] 0 {X17R:U -> X18R:C: adjacent_5p } 0 1 {X18R:C -> X17R:U: adjacent_3p } 0 2 {X17R:U -> X79R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {X79R:G -> X17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {X18R:C -> X19R:A: adjacent_5p } 0 5 {X19R:A -> X18R:C: adjacent_3p } 0 6 {X18R:C -> X78R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {X78R:G -> X18R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {X19R:A -> X20R:U: adjacent_5p upward } 0 9 {X20R:U -> X19R:A: adjacent_3p downward } 0 10 {X19R:A -> X77R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {X77R:U -> X19R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {X19R:A -> X78R:G: outward } 0 13 {X78R:G -> X19R:A: outward } 0 14 {X20R:U -> X76R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {X76R:A -> X20R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {X76R:A -> X77R:U: adjacent_5p upward } 0 17 {X77R:U -> X76R:A: adjacent_3p downward } 0 18 {X77R:U -> X78R:G: adjacent_5p upward } 0 19 {X78R:G -> X77R:U: adjacent_3p downward } 0 20 {X78R:G -> X79R:G: adjacent_5p upward } 0 21 {X79R:G -> X78R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 X18R:C 0 1 X19R:A 0 2 X20R:U 0 3 X21R:A 0 4 X75R:U 0 5 X76R:A 0 6 X77R:U 0 7 X78R:G 0 [Edges] 0 {X18R:C -> X19R:A: adjacent_5p } 0 1 {X19R:A -> X18R:C: adjacent_3p } 0 2 {X18R:C -> X78R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {X78R:G -> X18R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {X19R:A -> X20R:U: adjacent_5p upward } 0 5 {X20R:U -> X19R:A: adjacent_3p downward } 0 6 {X19R:A -> X77R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {X77R:U -> X19R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {X19R:A -> X78R:G: outward } 0 9 {X78R:G -> X19R:A: outward } 0 10 {X20R:U -> X21R:A: adjacent_5p upward } 0 11 {X21R:A -> X20R:U: adjacent_3p downward } 0 12 {X20R:U -> X76R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {X76R:A -> X20R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {X21R:A -> X75R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {X75R:U -> X21R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {X21R:A -> X76R:A: outward } 0 17 {X76R:A -> X21R:A: outward } 0 18 {X75R:U -> X76R:A: adjacent_5p upward } 0 19 {X76R:A -> X75R:U: adjacent_3p downward } 0 20 {X76R:A -> X77R:U: adjacent_5p upward } 0 21 {X77R:U -> X76R:A: adjacent_3p downward } 0 22 {X77R:U -> X78R:G: adjacent_5p upward } 0 23 {X78R:G -> X77R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 X25R:U 0 1 X26R:C 0 2 X27R:G 0 3 X28R:C 0 4 X42R:G 0 5 X43R:C 0 6 X44R:A 0 7 X45R:A 0 [Edges] 0 {X25R:U -> X26R:C: adjacent_5p upward } 0 1 {X26R:C -> X25R:U: adjacent_3p downward } 0 2 {X25R:U -> X45R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {X45R:A -> X25R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {X26R:C -> X27R:G: adjacent_5p } 0 5 {X27R:G -> X26R:C: adjacent_3p } 0 6 {X26R:C -> X44R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 7 {X44R:A -> X26R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 8 {X27R:G -> X28R:C: adjacent_5p upward } 0 9 {X28R:C -> X27R:G: adjacent_3p downward } 0 10 {X27R:G -> X43R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {X43R:C -> X27R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {X27R:G -> X44R:A: outward } 0 13 {X44R:A -> X27R:G: outward } 0 14 {X28R:C -> X42R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {X42R:G -> X28R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {X42R:G -> X43R:C: adjacent_5p upward } 0 17 {X43R:C -> X42R:G: adjacent_3p downward } 0 18 {X43R:C -> X44R:A: adjacent_5p } 0 19 {X44R:A -> X43R:C: adjacent_3p } 0 20 {X44R:A -> X45R:A: adjacent_5p upward } 0 21 {X45R:A -> X44R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 X26R:C 0 1 X27R:G 0 2 X28R:C 0 3 X29R:G 0 4 X41R:C 0 5 X42R:G 0 6 X43R:C 0 7 X44R:A 0 [Edges] 0 {X26R:C -> X27R:G: adjacent_5p } 0 1 {X27R:G -> X26R:C: adjacent_3p } 0 2 {X26R:C -> X44R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 3 {X44R:A -> X26R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 4 {X27R:G -> X28R:C: adjacent_5p upward } 0 5 {X28R:C -> X27R:G: adjacent_3p downward } 0 6 {X27R:G -> X43R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {X43R:C -> X27R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {X27R:G -> X44R:A: outward } 0 9 {X44R:A -> X27R:G: outward } 0 10 {X28R:C -> X29R:G: adjacent_5p upward } 0 11 {X29R:G -> X28R:C: adjacent_3p downward } 0 12 {X28R:C -> X42R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {X42R:G -> X28R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {X29R:G -> X41R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {X41R:C -> X29R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {X29R:G -> X42R:G: outward } 0 17 {X42R:G -> X29R:G: outward } 0 18 {X41R:C -> X42R:G: adjacent_5p upward } 0 19 {X42R:G -> X41R:C: adjacent_3p downward } 0 20 {X42R:G -> X43R:C: adjacent_5p upward } 0 21 {X43R:C -> X42R:G: adjacent_3p downward } 0 22 {X43R:C -> X44R:A: adjacent_5p } 0 23 {X44R:A -> X43R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 X27R:G 0 1 X28R:C 0 2 X29R:G 0 3 X30R:U 0 4 X40R:A 0 5 X41R:C 0 6 X42R:G 0 7 X43R:C 0 [Edges] 0 {X27R:G -> X28R:C: adjacent_5p upward } 0 1 {X28R:C -> X27R:G: adjacent_3p downward } 0 2 {X27R:G -> X43R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {X43R:C -> X27R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {X28R:C -> X29R:G: adjacent_5p upward } 0 5 {X29R:G -> X28R:C: adjacent_3p downward } 0 6 {X28R:C -> X42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {X42R:G -> X28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {X29R:G -> X30R:U: adjacent_5p upward } 0 9 {X30R:U -> X29R:G: adjacent_3p downward } 0 10 {X29R:G -> X41R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {X41R:C -> X29R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {X29R:G -> X42R:G: outward } 0 13 {X42R:G -> X29R:G: outward } 0 14 {X30R:U -> X40R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {X40R:A -> X30R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {X40R:A -> X41R:C: adjacent_5p upward } 0 17 {X41R:C -> X40R:A: adjacent_3p downward } 0 18 {X41R:C -> X42R:G: adjacent_5p upward } 0 19 {X42R:G -> X41R:C: adjacent_3p downward } 0 20 {X42R:G -> X43R:C: adjacent_5p upward } 0 21 {X43R:C -> X42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 X28R:C 0 1 X29R:G 0 2 X30R:U 0 3 X31R:G 0 4 X39R:C 0 5 X40R:A 0 6 X41R:C 0 7 X42R:G 0 [Edges] 0 {X28R:C -> X29R:G: adjacent_5p upward } 0 1 {X29R:G -> X28R:C: adjacent_3p downward } 0 2 {X28R:C -> X42R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {X42R:G -> X28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {X29R:G -> X30R:U: adjacent_5p upward } 0 5 {X30R:U -> X29R:G: adjacent_3p downward } 0 6 {X29R:G -> X41R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {X41R:C -> X29R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {X29R:G -> X42R:G: outward } 0 9 {X42R:G -> X29R:G: outward } 0 10 {X30R:U -> X31R:G: adjacent_5p upward } 0 11 {X31R:G -> X30R:U: adjacent_3p downward } 0 12 {X30R:U -> X40R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {X40R:A -> X30R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {X31R:G -> X39R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {X39R:C -> X31R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {X31R:G -> X40R:A: outward } 0 17 {X40R:A -> X31R:G: outward } 0 18 {X39R:C -> X40R:A: adjacent_5p upward } 0 19 {X40R:A -> X39R:C: adjacent_3p downward } 0 20 {X40R:A -> X41R:C: adjacent_5p upward } 0 21 {X41R:C -> X40R:A: adjacent_3p downward } 0 22 {X41R:C -> X42R:G: adjacent_5p upward } 0 23 {X42R:G -> X41R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 X54R:C 0 1 X55R:G 0 2 X56R:G 0 3 X57R:G 0 4 X69R:U 0 5 X70R:C 0 6 X71R:C 0 7 X72R:G 0 [Edges] 0 {X54R:C -> X55R:G: adjacent_5p } 0 1 {X55R:G -> X54R:C: adjacent_3p } 0 2 {X54R:C -> X72R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {X72R:G -> X54R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {X55R:G -> X56R:G: adjacent_5p upward } 0 5 {X56R:G -> X55R:G: adjacent_3p downward } 0 6 {X55R:G -> X71R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {X71R:C -> X55R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {X55R:G -> X72R:G: outward } 0 9 {X72R:G -> X55R:G: outward } 0 10 {X56R:G -> X57R:G: adjacent_5p upward } 0 11 {X57R:G -> X56R:G: adjacent_3p downward } 0 12 {X56R:G -> X70R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {X70R:C -> X56R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {X57R:G -> X69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {X69R:U -> X57R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {X69R:U -> X70R:C: adjacent_5p } 0 17 {X70R:C -> X69R:U: adjacent_3p } 0 18 {X70R:C -> X71R:C: adjacent_5p upward } 0 19 {X71R:C -> X70R:C: adjacent_3p downward } 0 20 {X71R:C -> X72R:G: adjacent_5p upward } 0 21 {X72R:G -> X71R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 X55R:G 0 1 X56R:G 0 2 X57R:G 0 3 X58R:C 0 4 X68R:G 0 5 X69R:U 0 6 X70R:C 0 7 X71R:C 0 [Edges] 0 {X55R:G -> X56R:G: adjacent_5p upward } 0 1 {X56R:G -> X55R:G: adjacent_3p downward } 0 2 {X55R:G -> X71R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {X71R:C -> X55R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {X56R:G -> X57R:G: adjacent_5p upward } 0 5 {X57R:G -> X56R:G: adjacent_3p downward } 0 6 {X56R:G -> X70R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {X70R:C -> X56R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {X57R:G -> X58R:C: adjacent_5p upward } 0 9 {X58R:C -> X57R:G: adjacent_3p downward } 0 10 {X57R:G -> X69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {X69R:U -> X57R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {X58R:C -> X68R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {X68R:G -> X58R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {X68R:G -> X69R:U: adjacent_5p upward } 0 15 {X69R:U -> X68R:G: adjacent_3p downward } 0 16 {X69R:U -> X70R:C: adjacent_5p } 0 17 {X70R:C -> X69R:U: adjacent_3p } 0 18 {X70R:C -> X71R:C: adjacent_5p upward } 0 19 {X71R:C -> X70R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 X56R:G 0 1 X57R:G 0 2 X58R:C 0 3 X59R:A 0 4 X67R:U 0 5 X68R:G 0 6 X69R:U 0 7 X70R:C 0 [Edges] 0 {X56R:G -> X57R:G: adjacent_5p upward } 0 1 {X57R:G -> X56R:G: adjacent_3p downward } 0 2 {X56R:G -> X70R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {X70R:C -> X56R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {X57R:G -> X58R:C: adjacent_5p upward } 0 5 {X58R:C -> X57R:G: adjacent_3p downward } 0 6 {X57R:G -> X69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {X69R:U -> X57R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {X58R:C -> X59R:A: adjacent_5p upward } 0 9 {X59R:A -> X58R:C: adjacent_3p downward } 0 10 {X58R:C -> X68R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {X68R:G -> X58R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {X59R:A -> X67R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {X67R:U -> X59R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {X59R:A -> X68R:G: outward } 0 15 {X68R:G -> X59R:A: outward } 0 16 {X67R:U -> X68R:G: adjacent_5p } 0 17 {X68R:G -> X67R:U: adjacent_3p } 0 18 {X68R:G -> X69R:U: adjacent_5p upward } 0 19 {X69R:U -> X68R:G: adjacent_3p downward } 0 20 {X69R:U -> X70R:C: adjacent_5p } 0 21 {X70R:C -> X69R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C102R:C 0 1 C103R:C 0 2 C104R:A 0 3 C105R:G 0 4 C154R:C 0 5 C155R:U 0 6 C156R:G 0 7 C157R:G 0 [Edges] 0 {C102R:C -> C103R:C: adjacent_5p } 0 1 {C103R:C -> C102R:C: adjacent_3p } 0 2 {C102R:C -> C157R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C157R:G -> C102R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C103R:C -> C104R:A: adjacent_5p upward } 0 5 {C104R:A -> C103R:C: adjacent_3p downward } 0 6 {C103R:C -> C156R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C156R:G -> C103R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C104R:A -> C105R:G: adjacent_5p upward } 0 9 {C105R:G -> C104R:A: adjacent_3p downward } 0 10 {C104R:A -> C155R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C155R:U -> C104R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C104R:A -> C156R:G: outward } 0 13 {C156R:G -> C104R:A: outward } 0 14 {C105R:G -> C154R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C154R:C -> C105R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C154R:C -> C155R:U: adjacent_5p } 0 17 {C155R:U -> C154R:C: adjacent_3p } 0 18 {C155R:U -> C156R:G: adjacent_5p } 0 19 {C156R:G -> C155R:U: adjacent_3p } 0 20 {C156R:G -> C157R:G: adjacent_5p upward } 0 21 {C157R:G -> C156R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C103R:C 0 1 C104R:A 0 2 C105R:G 0 3 C106R:G 0 4 C153R:A 0 5 C154R:C 0 6 C155R:U 0 7 C156R:G 0 [Edges] 0 {C103R:C -> C104R:A: adjacent_5p upward } 0 1 {C104R:A -> C103R:C: adjacent_3p downward } 0 2 {C103R:C -> C156R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C156R:G -> C103R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C104R:A -> C105R:G: adjacent_5p upward } 0 5 {C105R:G -> C104R:A: adjacent_3p downward } 0 6 {C104R:A -> C155R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C155R:U -> C104R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C104R:A -> C156R:G: outward } 0 9 {C156R:G -> C104R:A: outward } 0 10 {C105R:G -> C106R:G: adjacent_5p upward } 0 11 {C106R:G -> C105R:G: adjacent_3p downward } 0 12 {C105R:G -> C154R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C154R:C -> C105R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C106R:G -> C153R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {C153R:A -> C106R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {C153R:A -> C154R:C: adjacent_5p upward } 0 17 {C154R:C -> C153R:A: adjacent_3p downward } 0 18 {C154R:C -> C155R:U: adjacent_5p } 0 19 {C155R:U -> C154R:C: adjacent_3p } 0 20 {C155R:U -> C156R:G: adjacent_5p } 0 21 {C156R:G -> C155R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C109R:G 0 1 C110R:U 0 2 C111R:A 0 3 C112R:U 0 4 C126R:A 0 5 C127R:A 0 6 C128R:U 0 7 C129R:C 0 [Edges] 0 {C109R:G -> C110R:U: adjacent_5p inward } 0 1 {C110R:U -> C109R:G: adjacent_3p inward } 0 2 {C109R:G -> C129R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C129R:C -> C109R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C110R:U -> C111R:A: adjacent_5p } 0 5 {C111R:A -> C110R:U: adjacent_3p } 0 6 {C111R:A -> C112R:U: adjacent_5p } 0 7 {C112R:U -> C111R:A: adjacent_3p } 0 8 {C112R:U -> C126R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {C126R:A -> C112R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {C126R:A -> C127R:A: adjacent_5p upward } 0 11 {C127R:A -> C126R:A: adjacent_3p downward } 0 12 {C127R:A -> C128R:U: adjacent_5p upward } 0 13 {C128R:U -> C127R:A: adjacent_3p downward } 0 14 {C128R:U -> C129R:C: adjacent_5p } 0 15 {C129R:C -> C128R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 . 6 . . . . . 13 . 14 7 3 . . . . . 15 . [GraphModel] [Vertices] 0 C112R:U 0 1 C113R:G 0 2 C114R:C 0 3 C115R:U 0 4 C123R:A 0 5 C124R:G 0 6 C125R:C 0 7 C126R:A 0 [Edges] 0 {C112R:U -> C113R:G: adjacent_5p } 0 1 {C113R:G -> C112R:U: adjacent_3p } 0 2 {C112R:U -> C126R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C126R:A -> C112R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C113R:G -> C114R:C: adjacent_5p upward } 0 5 {C114R:C -> C113R:G: adjacent_3p downward } 0 6 {C113R:G -> C125R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C125R:C -> C113R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C113R:G -> C126R:A: outward } 0 9 {C126R:A -> C113R:G: outward } 0 10 {C114R:C -> C115R:U: adjacent_5p upward } 0 11 {C115R:U -> C114R:C: adjacent_3p downward } 0 12 {C114R:C -> C124R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C124R:G -> C114R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C115R:U -> C123R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 15 {C123R:A -> C115R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 16 {C123R:A -> C124R:G: adjacent_5p upward } 0 17 {C124R:G -> C123R:A: adjacent_3p downward } 0 18 {C124R:G -> C125R:C: adjacent_5p upward } 0 19 {C125R:C -> C124R:G: adjacent_3p downward } 0 20 {C125R:C -> C126R:A: adjacent_5p upward } 0 21 {C126R:A -> C125R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C140R:U 0 1 C141R:G 0 2 C142R:C 0 3 C143R:G 0 4 C148R:A 0 5 C149R:G 0 6 C150R:C 0 7 C151R:U 0 [Edges] 0 {C140R:U -> C141R:G: adjacent_5p upward } 0 1 {C141R:G -> C140R:U: adjacent_3p downward } 0 2 {C140R:U -> C151R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {C151R:U -> C140R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {C141R:G -> C142R:C: adjacent_5p upward } 0 5 {C142R:C -> C141R:G: adjacent_3p downward } 0 6 {C141R:G -> C150R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C150R:C -> C141R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C142R:C -> C143R:G: adjacent_5p upward } 0 9 {C143R:G -> C142R:C: adjacent_3p downward } 0 10 {C142R:C -> C149R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C149R:G -> C142R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C143R:G -> C148R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {C148R:A -> C143R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {C148R:A -> C149R:G: adjacent_5p upward } 0 15 {C149R:G -> C148R:A: adjacent_3p downward } 0 16 {C149R:G -> C150R:C: adjacent_5p upward } 0 17 {C150R:C -> C149R:G: adjacent_3p downward } 0 18 {C150R:C -> C151R:U: adjacent_5p upward } 0 19 {C151R:U -> C150R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D302R:C 0 1 D303R:C 0 2 D304R:A 0 3 D305R:G 0 4 D354R:C 0 5 D355R:U 0 6 D356R:G 0 7 D357R:G 0 [Edges] 0 {D302R:C -> D303R:C: adjacent_5p upward } 0 1 {D303R:C -> D302R:C: adjacent_3p downward } 0 2 {D302R:C -> D357R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D357R:G -> D302R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D303R:C -> D304R:A: adjacent_5p upward } 0 5 {D304R:A -> D303R:C: adjacent_3p downward } 0 6 {D303R:C -> D356R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D356R:G -> D303R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D304R:A -> D305R:G: adjacent_5p upward } 0 9 {D305R:G -> D304R:A: adjacent_3p downward } 0 10 {D304R:A -> D355R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D355R:U -> D304R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {D304R:A -> D356R:G: outward } 0 13 {D356R:G -> D304R:A: outward } 0 14 {D305R:G -> D354R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D354R:C -> D305R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D354R:C -> D355R:U: adjacent_5p } 0 17 {D355R:U -> D354R:C: adjacent_3p } 0 18 {D355R:U -> D356R:G: adjacent_5p upward } 0 19 {D356R:G -> D355R:U: adjacent_3p downward } 0 20 {D356R:G -> D357R:G: adjacent_5p upward } 0 21 {D357R:G -> D356R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D303R:C 0 1 D304R:A 0 2 D305R:G 0 3 D306R:G 0 4 D353R:A 0 5 D354R:C 0 6 D355R:U 0 7 D356R:G 0 [Edges] 0 {D303R:C -> D304R:A: adjacent_5p upward } 0 1 {D304R:A -> D303R:C: adjacent_3p downward } 0 2 {D303R:C -> D356R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D356R:G -> D303R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D304R:A -> D305R:G: adjacent_5p upward } 0 5 {D305R:G -> D304R:A: adjacent_3p downward } 0 6 {D304R:A -> D355R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D355R:U -> D304R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D304R:A -> D356R:G: outward } 0 9 {D356R:G -> D304R:A: outward } 0 10 {D305R:G -> D306R:G: adjacent_5p upward } 0 11 {D306R:G -> D305R:G: adjacent_3p downward } 0 12 {D305R:G -> D354R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D354R:C -> D305R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D306R:G -> D353R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {D353R:A -> D306R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {D353R:A -> D354R:C: adjacent_5p upward } 0 17 {D354R:C -> D353R:A: adjacent_3p downward } 0 18 {D354R:C -> D355R:U: adjacent_5p } 0 19 {D355R:U -> D354R:C: adjacent_3p } 0 20 {D355R:U -> D356R:G: adjacent_5p upward } 0 21 {D356R:G -> D355R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D309R:G 0 1 D310R:U 0 2 D311R:A 0 3 D312R:U 0 4 D326R:A 0 5 D327R:A 0 6 D328R:U 0 7 D329R:C 0 [Edges] 0 {D309R:G -> D310R:U: adjacent_5p inward } 0 1 {D310R:U -> D309R:G: adjacent_3p inward } 0 2 {D309R:G -> D329R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D329R:C -> D309R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D310R:U -> D311R:A: adjacent_5p } 0 5 {D311R:A -> D310R:U: adjacent_3p } 0 6 {D311R:A -> D312R:U: adjacent_5p } 0 7 {D312R:U -> D311R:A: adjacent_3p } 0 8 {D312R:U -> D326R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {D326R:A -> D312R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {D326R:A -> D327R:A: adjacent_5p upward } 0 11 {D327R:A -> D326R:A: adjacent_3p downward } 0 12 {D327R:A -> D328R:U: adjacent_5p upward } 0 13 {D328R:U -> D327R:A: adjacent_3p downward } 0 14 {D328R:U -> D329R:C: adjacent_5p } 0 15 {D329R:C -> D328R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 . 6 . . . . . 13 . 14 7 3 . . . . . 15 . [GraphModel] [Vertices] 0 D312R:U 0 1 D313R:G 0 2 D314R:C 0 3 D315R:U 0 4 D323R:A 0 5 D324R:G 0 6 D325R:C 0 7 D326R:A 0 [Edges] 0 {D312R:U -> D313R:G: adjacent_5p upward } 0 1 {D313R:G -> D312R:U: adjacent_3p downward } 0 2 {D312R:U -> D326R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D326R:A -> D312R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D313R:G -> D314R:C: adjacent_5p upward } 0 5 {D314R:C -> D313R:G: adjacent_3p downward } 0 6 {D313R:G -> D325R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D325R:C -> D313R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D313R:G -> D326R:A: outward } 0 9 {D326R:A -> D313R:G: outward } 0 10 {D314R:C -> D315R:U: adjacent_5p upward } 0 11 {D315R:U -> D314R:C: adjacent_3p downward } 0 12 {D314R:C -> D324R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D324R:G -> D314R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D315R:U -> D323R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 15 {D323R:A -> D315R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 16 {D323R:A -> D324R:G: adjacent_5p upward } 0 17 {D324R:G -> D323R:A: adjacent_3p downward } 0 18 {D324R:G -> D325R:C: adjacent_5p upward } 0 19 {D325R:C -> D324R:G: adjacent_3p downward } 0 20 {D325R:C -> D326R:A: adjacent_5p } 0 21 {D326R:A -> D325R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D340R:U 0 1 D341R:G 0 2 D342R:C 0 3 D343R:G 0 4 D348R:A 0 5 D349R:G 0 6 D350R:C 0 7 D351R:U 0 [Edges] 0 {D340R:U -> D341R:G: adjacent_5p upward } 0 1 {D341R:G -> D340R:U: adjacent_3p downward } 0 2 {D340R:U -> D351R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {D351R:U -> D340R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {D341R:G -> D342R:C: adjacent_5p upward } 0 5 {D342R:C -> D341R:G: adjacent_3p downward } 0 6 {D341R:G -> D350R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D350R:C -> D341R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D342R:C -> D343R:G: adjacent_5p upward } 0 9 {D343R:G -> D342R:C: adjacent_3p downward } 0 10 {D342R:C -> D349R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D349R:G -> D342R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D343R:G -> D348R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {D348R:A -> D343R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {D348R:A -> D349R:G: adjacent_5p upward } 0 15 {D349R:G -> D348R:A: adjacent_3p downward } 0 16 {D349R:G -> D350R:C: adjacent_5p upward } 0 17 {D350R:C -> D349R:G: adjacent_3p downward } 0 18 {D350R:C -> D351R:U: adjacent_5p upward } 0 19 {D351R:U -> D350R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:C 0 2 A6R:U 0 3 A7R:G 0 4 A17R:C 0 5 A18R:A 0 6 A19R:G 0 7 A20R:C 0 [Edges] 0 {A4R:G -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:U -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:U: adjacent_3p downward } 0 10 {A6R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A18R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:G -> A18R:A: outward } 0 15 {A18R:A -> A7R:G: outward } 0 16 {A17R:C -> A18R:A: adjacent_5p upward } 0 17 {A18R:A -> A17R:C: adjacent_3p downward } 0 18 {A18R:A -> A19R:G: adjacent_5p upward } 0 19 {A19R:G -> A18R:A: adjacent_3p downward } 0 20 {A19R:G -> A20R:C: adjacent_5p upward } 0 21 {A20R:C -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:U 0 2 A12R:G 0 3 A13R:C 0 4 B12R:G 0 5 B13R:C 0 6 B14R:A 0 7 B15R:C 0 [Edges] 0 {A10R:G -> A11R:U: adjacent_5p upward } 0 1 {A11R:U -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:U -> A12R:G: adjacent_5p } 0 5 {A12R:G -> A11R:U: adjacent_3p } 0 6 {A11R:U -> B14R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B14R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A12R:G -> A13R:C: adjacent_5p upward } 0 9 {A13R:C -> A12R:G: adjacent_3p downward } 0 10 {A12R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B13R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:G -> B14R:A: outward } 0 13 {B14R:A -> A12R:G: outward } 0 14 {A13R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B12R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B12R:G -> B13R:C: adjacent_5p upward } 0 17 {B13R:C -> B12R:G: adjacent_3p downward } 0 18 {B13R:C -> B14R:A: adjacent_5p upward } 0 19 {B14R:A -> B13R:C: adjacent_3p downward } 0 20 {B14R:A -> B15R:C: adjacent_5p upward } 0 21 {B15R:C -> B14R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:G 0 2 A13R:C 0 3 A14R:A 0 4 B11R:U 0 5 B12R:G 0 6 B13R:C 0 7 B14R:A 0 [Edges] 0 {A11R:U -> A12R:G: adjacent_5p } 0 1 {A12R:G -> A11R:U: adjacent_3p } 0 2 {A11R:U -> B14R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B14R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A12R:G -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B13R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> B14R:A: outward } 0 9 {B14R:A -> A12R:G: outward } 0 10 {A13R:C -> A14R:A: adjacent_5p upward } 0 11 {A14R:A -> A13R:C: adjacent_3p downward } 0 12 {A13R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B12R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:A -> B11R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B11R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A14R:A -> B12R:G: outward } 0 17 {B12R:G -> A14R:A: outward } 0 18 {B11R:U -> B12R:G: adjacent_5p } 0 19 {B12R:G -> B11R:U: adjacent_3p } 0 20 {B12R:G -> B13R:C: adjacent_5p upward } 0 21 {B13R:C -> B12R:G: adjacent_3p downward } 0 22 {B13R:C -> B14R:A: adjacent_5p upward } 0 23 {B14R:A -> B13R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:C 0 2 A14R:A 0 3 A15R:C 0 4 B10R:G 0 5 B11R:U 0 6 B12R:G 0 7 B13R:C 0 [Edges] 0 {A12R:G -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B13R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:C -> A14R:A: adjacent_5p upward } 0 5 {A14R:A -> A13R:C: adjacent_3p downward } 0 6 {A13R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:A -> A15R:C: adjacent_5p upward } 0 9 {A15R:C -> A14R:A: adjacent_3p downward } 0 10 {A14R:A -> B11R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B11R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A14R:A -> B12R:G: outward } 0 13 {B12R:G -> A14R:A: outward } 0 14 {A15R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B10R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B10R:G -> B11R:U: adjacent_5p upward } 0 17 {B11R:U -> B10R:G: adjacent_3p downward } 0 18 {B11R:U -> B12R:G: adjacent_5p } 0 19 {B12R:G -> B11R:U: adjacent_3p } 0 20 {B12R:G -> B13R:C: adjacent_5p upward } 0 21 {B13R:C -> B12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B4R:G 0 1 B5R:C 0 2 B6R:U 0 3 B7R:G 0 4 B17R:C 0 5 B18R:A 0 6 B19R:G 0 7 B20R:C 0 [Edges] 0 {B4R:G -> B5R:C: adjacent_5p upward } 0 1 {B5R:C -> B4R:G: adjacent_3p downward } 0 2 {B4R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B20R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B5R:C -> B6R:U: adjacent_5p upward } 0 5 {B6R:U -> B5R:C: adjacent_3p downward } 0 6 {B5R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B19R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B6R:U -> B7R:G: adjacent_5p upward } 0 9 {B7R:G -> B6R:U: adjacent_3p downward } 0 10 {B6R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B18R:A -> B6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B7R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B17R:C -> B7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B7R:G -> B18R:A: outward } 0 15 {B18R:A -> B7R:G: outward } 0 16 {B17R:C -> B18R:A: adjacent_5p } 0 17 {B18R:A -> B17R:C: adjacent_3p } 0 18 {B18R:A -> B19R:G: adjacent_5p upward } 0 19 {B19R:G -> B18R:A: adjacent_3p downward } 0 20 {B19R:G -> B20R:C: adjacent_5p upward } 0 21 {B20R:C -> B19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 1R:A 0 1 2R:G 0 2 3R:C 0 3 4R:G 0 4 69R:C 0 5 70R:G 0 6 71R:C 0 7 72R:U 0 [Edges] 0 {1R:A -> 2R:G: adjacent_5p upward } 0 1 {2R:G -> 1R:A: adjacent_3p downward } 0 2 {1R:A -> 72R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {72R:U -> 1R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {2R:G -> 3R:C: adjacent_5p upward } 0 5 {3R:C -> 2R:G: adjacent_3p downward } 0 6 {2R:G -> 71R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {71R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {3R:C -> 4R:G: adjacent_5p } 0 9 {4R:G -> 3R:C: adjacent_3p } 0 10 {3R:C -> 70R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {70R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {4R:G -> 69R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {69R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {4R:G -> 70R:G: outward } 0 15 {70R:G -> 4R:G: outward } 0 16 {69R:C -> 70R:G: adjacent_5p } 0 17 {70R:G -> 69R:C: adjacent_3p } 0 18 {70R:G -> 71R:C: adjacent_5p upward } 0 19 {71R:C -> 70R:G: adjacent_3p downward } 0 20 {71R:C -> 72R:U: adjacent_5p } 0 21 {72R:U -> 71R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 2R:G 0 1 3R:C 0 2 4R:G 0 3 5R:C 0 4 68R:G 0 5 69R:C 0 6 70R:G 0 7 71R:C 0 [Edges] 0 {2R:G -> 3R:C: adjacent_5p upward } 0 1 {3R:C -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 71R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {71R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:C -> 4R:G: adjacent_5p } 0 5 {4R:G -> 3R:C: adjacent_3p } 0 6 {3R:C -> 70R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {70R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:G -> 5R:C: adjacent_5p upward } 0 9 {5R:C -> 4R:G: adjacent_3p downward } 0 10 {4R:G -> 69R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {69R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {4R:G -> 70R:G: outward } 0 13 {70R:G -> 4R:G: outward } 0 14 {5R:C -> 68R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {68R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {68R:G -> 69R:C: adjacent_5p upward } 0 17 {69R:C -> 68R:G: adjacent_3p downward } 0 18 {69R:C -> 70R:G: adjacent_5p } 0 19 {70R:G -> 69R:C: adjacent_3p } 0 20 {70R:G -> 71R:C: adjacent_5p upward } 0 21 {71R:C -> 70R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 3R:C 0 1 4R:G 0 2 5R:C 0 3 6R:C 0 4 67R:G 0 5 68R:G 0 6 69R:C 0 7 70R:G 0 [Edges] 0 {3R:C -> 4R:G: adjacent_5p } 0 1 {4R:G -> 3R:C: adjacent_3p } 0 2 {3R:C -> 70R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {70R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:G -> 5R:C: adjacent_5p upward } 0 5 {5R:C -> 4R:G: adjacent_3p downward } 0 6 {4R:G -> 69R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {69R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:G -> 70R:G: outward } 0 9 {70R:G -> 4R:G: outward } 0 10 {5R:C -> 6R:C: adjacent_5p upward } 0 11 {6R:C -> 5R:C: adjacent_3p downward } 0 12 {5R:C -> 68R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {68R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {6R:C -> 67R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {67R:G -> 6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {67R:G -> 68R:G: adjacent_5p upward } 0 17 {68R:G -> 67R:G: adjacent_3p downward } 0 18 {68R:G -> 69R:C: adjacent_5p upward } 0 19 {69R:C -> 68R:G: adjacent_3p downward } 0 20 {69R:C -> 70R:G: adjacent_5p } 0 21 {70R:G -> 69R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 4R:G 0 1 5R:C 0 2 6R:C 0 3 7R:G 0 4 66R:C 0 5 67R:G 0 6 68R:G 0 7 69R:C 0 [Edges] 0 {4R:G -> 5R:C: adjacent_5p upward } 0 1 {5R:C -> 4R:G: adjacent_3p downward } 0 2 {4R:G -> 69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {69R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {5R:C -> 6R:C: adjacent_5p upward } 0 5 {6R:C -> 5R:C: adjacent_3p downward } 0 6 {5R:C -> 68R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {68R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {6R:C -> 7R:G: adjacent_5p } 0 9 {7R:G -> 6R:C: adjacent_3p } 0 10 {6R:C -> 67R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {67R:G -> 6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {7R:G -> 66R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {66R:C -> 7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {7R:G -> 67R:G: outward } 0 15 {67R:G -> 7R:G: outward } 0 16 {66R:C -> 67R:G: adjacent_5p } 0 17 {67R:G -> 66R:C: adjacent_3p } 0 18 {67R:G -> 68R:G: adjacent_5p upward } 0 19 {68R:G -> 67R:G: adjacent_3p downward } 0 20 {68R:G -> 69R:C: adjacent_5p upward } 0 21 {69R:C -> 68R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 27R:C 0 1 28R:A 0 2 29R:G 0 3 30R:G 0 4 40R:C 0 5 41R:C 0 6 42R:U 0 7 43R:G 0 [Edges] 0 {27R:C -> 28R:A: adjacent_5p upward } 0 1 {28R:A -> 27R:C: adjacent_3p downward } 0 2 {27R:C -> 43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {43R:G -> 27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {28R:A -> 29R:G: adjacent_5p upward } 0 5 {29R:G -> 28R:A: adjacent_3p downward } 0 6 {28R:A -> 42R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {42R:U -> 28R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {28R:A -> 43R:G: outward } 0 9 {43R:G -> 28R:A: outward } 0 10 {29R:G -> 30R:G: adjacent_5p upward } 0 11 {30R:G -> 29R:G: adjacent_3p downward } 0 12 {29R:G -> 41R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {41R:C -> 29R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {30R:G -> 40R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {40R:C -> 30R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {40R:C -> 41R:C: adjacent_5p upward } 0 17 {41R:C -> 40R:C: adjacent_3p downward } 0 18 {41R:C -> 42R:U: adjacent_5p upward } 0 19 {42R:U -> 41R:C: adjacent_3p downward } 0 20 {42R:U -> 43R:G: adjacent_5p upward } 0 21 {43R:G -> 42R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 28R:A 0 1 29R:G 0 2 30R:G 0 3 31R:G 0 4 39R:C 0 5 40R:C 0 6 41R:C 0 7 42R:U 0 [Edges] 0 {28R:A -> 29R:G: adjacent_5p upward } 0 1 {29R:G -> 28R:A: adjacent_3p downward } 0 2 {28R:A -> 42R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {42R:U -> 28R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {29R:G -> 30R:G: adjacent_5p upward } 0 5 {30R:G -> 29R:G: adjacent_3p downward } 0 6 {29R:G -> 41R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {41R:C -> 29R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {30R:G -> 31R:G: adjacent_5p upward } 0 9 {31R:G -> 30R:G: adjacent_3p downward } 0 10 {30R:G -> 40R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {40R:C -> 30R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {31R:G -> 39R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {39R:C -> 31R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {39R:C -> 40R:C: adjacent_5p } 0 15 {40R:C -> 39R:C: adjacent_3p } 0 16 {40R:C -> 41R:C: adjacent_5p upward } 0 17 {41R:C -> 40R:C: adjacent_3p downward } 0 18 {41R:C -> 42R:U: adjacent_5p upward } 0 19 {42R:U -> 41R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 29R:G 0 1 30R:G 0 2 31R:G 0 3 32R:C 0 4 38R:A 0 5 39R:C 0 6 40R:C 0 7 41R:C 0 [Edges] 0 {29R:G -> 30R:G: adjacent_5p upward } 0 1 {30R:G -> 29R:G: adjacent_3p downward } 0 2 {29R:G -> 41R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {41R:C -> 29R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {30R:G -> 31R:G: adjacent_5p upward } 0 5 {31R:G -> 30R:G: adjacent_3p downward } 0 6 {30R:G -> 40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {40R:C -> 30R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {31R:G -> 32R:C: adjacent_5p } 0 9 {32R:C -> 31R:G: adjacent_3p } 0 10 {31R:G -> 39R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {39R:C -> 31R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {32R:C -> 38R:A: pairing antiparallel cis one_hbond Bh/Ww } 0 13 {38R:A -> 32R:C: pairing antiparallel cis one_hbond Ww/Bh } 0 14 {38R:A -> 39R:C: adjacent_5p upward } 0 15 {39R:C -> 38R:A: adjacent_3p downward } 0 16 {39R:C -> 40R:C: adjacent_5p } 0 17 {40R:C -> 39R:C: adjacent_3p } 0 18 {40R:C -> 41R:C: adjacent_5p upward } 0 19 {41R:C -> 40R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:A 0 4 B12R:G 0 5 B13R:A 0 6 B14R:G 0 7 B15R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B14R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:A: adjacent_5p } 0 9 {A5R:A -> A4R:G: adjacent_3p } 0 10 {A4R:G -> B12R:G: inward } 0 11 {B12R:G -> A4R:G: inward } 0 12 {A4R:G -> B13R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {B13R:A -> A4R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A5R:A -> B12R:G: pairing antiparallel trans XI Hh/Ss } 0 15 {B12R:G -> A5R:A: pairing antiparallel trans XI Ss/Hh } 0 16 {A5R:A -> B13R:A: outward } 0 17 {B13R:A -> A5R:A: outward } 0 18 {B12R:G -> B13R:A: adjacent_5p } 0 19 {B13R:A -> B12R:G: adjacent_3p } 0 20 {B13R:A -> B14R:G: adjacent_5p upward } 0 21 {B14R:G -> B13R:A: adjacent_3p downward } 0 22 {B14R:G -> B15R:C: adjacent_5p upward } 0 23 {B15R:C -> B14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 12 . . 3 . . 9 . 14 16 . . 4 . . 11 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:A 0 3 A6R:G 0 4 B11R:C 0 5 B12R:G 0 6 B13R:A 0 7 B14R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B14R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p } 0 5 {A5R:A -> A4R:G: adjacent_3p } 0 6 {A4R:G -> B12R:G: inward } 0 7 {B12R:G -> A4R:G: inward } 0 8 {A4R:G -> B13R:A: pairing antiparallel trans XI Ss/Hh } 0 9 {B13R:A -> A4R:G: pairing antiparallel trans XI Hh/Ss } 0 10 {A5R:A -> A6R:G: adjacent_5p upward } 0 11 {A6R:G -> A5R:A: adjacent_3p downward } 0 12 {A5R:A -> B12R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {B12R:G -> A5R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {A5R:A -> B13R:A: outward } 0 15 {B13R:A -> A5R:A: outward } 0 16 {A6R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {B11R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {B11R:C -> B12R:G: adjacent_5p upward } 0 19 {B12R:G -> B11R:C: adjacent_3p downward } 0 20 {B12R:G -> B13R:A: adjacent_5p } 0 21 {B13R:A -> B12R:G: adjacent_3p } 0 22 {B13R:A -> B14R:G: adjacent_5p upward } 0 23 {B14R:G -> B13R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . 7 13 . 19 . 20 . 6 . 9 15 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:G 0 3 A7R:C 0 4 B10R:G 0 5 B11R:C 0 6 B12R:G 0 7 B13R:A 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p } 0 1 {A5R:A -> A4R:G: adjacent_3p } 0 2 {A4R:G -> B12R:G: inward } 0 3 {B12R:G -> A4R:G: inward } 0 4 {A4R:G -> B13R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {B13R:A -> A4R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {A5R:A -> A6R:G: adjacent_5p upward } 0 7 {A6R:G -> A5R:A: adjacent_3p downward } 0 8 {A5R:A -> B12R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {B12R:G -> A5R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {A5R:A -> B13R:A: outward } 0 11 {B13R:A -> A5R:A: outward } 0 12 {A6R:G -> A7R:C: adjacent_5p upward } 0 13 {A7R:C -> A6R:G: adjacent_3p downward } 0 14 {A6R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B11R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A7R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 17 {B10R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 18 {B10R:G -> B11R:C: adjacent_5p upward } 0 19 {B11R:C -> B10R:G: adjacent_3p downward } 0 20 {B11R:C -> B12R:G: adjacent_5p upward } 0 21 {B12R:G -> B11R:C: adjacent_3p downward } 0 22 {B12R:G -> B13R:A: adjacent_5p } 0 23 {B13R:A -> B12R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . 14 . . 3 . . 13 . 16 . . . 4 . . . 17 . 18 . . 5 . . 15 . 19 . 20 . 6 3 9 . . . 21 . 22 7 5 11 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:G 0 2 A5R:U 0 3 A6R:G 0 4 A15R:C 0 5 A16R:A 0 6 A17R:C 0 7 A18R:U 0 [Edges] 0 {A3R:A -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A18R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> A6R:G: adjacent_5p upward } 0 9 {A6R:G -> A5R:U: adjacent_3p downward } 0 10 {A5R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A16R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A15R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A15R:C -> A16R:A: adjacent_5p upward } 0 15 {A16R:A -> A15R:C: adjacent_3p downward } 0 16 {A16R:A -> A17R:C: adjacent_5p upward } 0 17 {A17R:C -> A16R:A: adjacent_3p downward } 0 18 {A17R:C -> A18R:U: adjacent_5p } 0 19 {A18R:U -> A17R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:U 0 2 A6R:G 0 3 A7R:G 0 4 A14R:C 0 5 A15R:C 0 6 A16R:A 0 7 A17R:C 0 [Edges] 0 {A4R:G -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> A16R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A16R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:G -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:G: adjacent_3p downward } 0 10 {A6R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A15R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A14R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:C -> A15R:C: adjacent_5p } 0 15 {A15R:C -> A14R:C: adjacent_3p } 0 16 {A15R:C -> A16R:A: adjacent_5p upward } 0 17 {A16R:A -> A15R:C: adjacent_3p downward } 0 18 {A16R:A -> A17R:C: adjacent_5p upward } 0 19 {A17R:C -> A16R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:C 0 3 A5R:U 0 4 A25R:A 0 5 A26R:G 0 6 A27R:C 0 7 A28R:C 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A28R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A27R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:U: adjacent_5p } 0 9 {A5R:U -> A4R:C: adjacent_3p } 0 10 {A4R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A26R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A25R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A25R:A -> A26R:G: adjacent_5p upward } 0 15 {A26R:G -> A25R:A: adjacent_3p downward } 0 16 {A26R:G -> A27R:C: adjacent_5p upward } 0 17 {A27R:C -> A26R:G: adjacent_3p downward } 0 18 {A27R:C -> A28R:C: adjacent_5p } 0 19 {A28R:C -> A27R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:C 0 2 A5R:U 0 3 A6R:G 0 4 A24R:C 0 5 A25R:A 0 6 A26R:G 0 7 A27R:C 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:U: adjacent_5p } 0 5 {A5R:U -> A4R:C: adjacent_3p } 0 6 {A4R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A26R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> A6R:G: adjacent_5p upward } 0 9 {A6R:G -> A5R:U: adjacent_3p downward } 0 10 {A5R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A25R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A24R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:G -> A25R:A: outward } 0 15 {A25R:A -> A6R:G: outward } 0 16 {A24R:C -> A25R:A: adjacent_5p } 0 17 {A25R:A -> A24R:C: adjacent_3p } 0 18 {A25R:A -> A26R:G: adjacent_5p upward } 0 19 {A26R:G -> A25R:A: adjacent_3p downward } 0 20 {A26R:G -> A27R:C: adjacent_5p upward } 0 21 {A27R:C -> A26R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A15R:G 0 1 A16R:C 0 2 A17R:U 0 3 A18R:G 0 4 A43R:C 0 5 A44R:A 0 6 A45R:G 0 7 A46R:C 0 [Edges] 0 {A15R:G -> A16R:C: adjacent_5p upward } 0 1 {A16R:C -> A15R:G: adjacent_3p downward } 0 2 {A15R:G -> A46R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A46R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A16R:C -> A17R:U: adjacent_5p } 0 5 {A17R:U -> A16R:C: adjacent_3p } 0 6 {A16R:C -> A45R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A45R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A17R:U -> A18R:G: adjacent_5p } 0 9 {A18R:G -> A17R:U: adjacent_3p } 0 10 {A17R:U -> A44R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A44R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A18R:G -> A43R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A43R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A43R:C -> A44R:A: adjacent_5p } 0 15 {A44R:A -> A43R:C: adjacent_3p } 0 16 {A44R:A -> A45R:G: adjacent_5p upward } 0 17 {A45R:G -> A44R:A: adjacent_3p downward } 0 18 {A45R:G -> A46R:C: adjacent_5p upward } 0 19 {A46R:C -> A45R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A16R:C 0 1 A17R:U 0 2 A18R:G 0 3 A19R:A 0 4 A42R:U 0 5 A43R:C 0 6 A44R:A 0 7 A45R:G 0 [Edges] 0 {A16R:C -> A17R:U: adjacent_5p } 0 1 {A17R:U -> A16R:C: adjacent_3p } 0 2 {A16R:C -> A45R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A45R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A17R:U -> A18R:G: adjacent_5p } 0 5 {A18R:G -> A17R:U: adjacent_3p } 0 6 {A17R:U -> A44R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A44R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A18R:G -> A19R:A: adjacent_5p upward } 0 9 {A19R:A -> A18R:G: adjacent_3p downward } 0 10 {A18R:G -> A43R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A43R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A19R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A42R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A42R:U -> A43R:C: adjacent_5p } 0 15 {A43R:C -> A42R:U: adjacent_3p } 0 16 {A43R:C -> A44R:A: adjacent_5p } 0 17 {A44R:A -> A43R:C: adjacent_3p } 0 18 {A44R:A -> A45R:G: adjacent_5p upward } 0 19 {A45R:G -> A44R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A17R:U 0 1 A18R:G 0 2 A19R:A 0 3 A20R:C 0 4 A41R:G 0 5 A42R:U 0 6 A43R:C 0 7 A44R:A 0 [Edges] 0 {A17R:U -> A18R:G: adjacent_5p } 0 1 {A18R:G -> A17R:U: adjacent_3p } 0 2 {A17R:U -> A44R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A44R:A -> A17R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A18R:G -> A19R:A: adjacent_5p upward } 0 5 {A19R:A -> A18R:G: adjacent_3p downward } 0 6 {A18R:G -> A43R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A43R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A19R:A -> A20R:C: adjacent_5p upward } 0 9 {A20R:C -> A19R:A: adjacent_3p downward } 0 10 {A19R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A42R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A20R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A41R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A41R:G -> A42R:U: adjacent_5p upward } 0 15 {A42R:U -> A41R:G: adjacent_3p downward } 0 16 {A42R:U -> A43R:C: adjacent_5p } 0 17 {A43R:C -> A42R:U: adjacent_3p } 0 18 {A43R:C -> A44R:A: adjacent_5p } 0 19 {A44R:A -> A43R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A18R:G 0 1 A19R:A 0 2 A20R:C 0 3 A21R:U 0 4 A40R:A 0 5 A41R:G 0 6 A42R:U 0 7 A43R:C 0 [Edges] 0 {A18R:G -> A19R:A: adjacent_5p upward } 0 1 {A19R:A -> A18R:G: adjacent_3p downward } 0 2 {A18R:G -> A43R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A43R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A19R:A -> A20R:C: adjacent_5p upward } 0 5 {A20R:C -> A19R:A: adjacent_3p downward } 0 6 {A19R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A42R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A20R:C -> A21R:U: adjacent_5p } 0 9 {A21R:U -> A20R:C: adjacent_3p } 0 10 {A20R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A41R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A21R:U -> A40R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A40R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A40R:A -> A41R:G: adjacent_5p upward } 0 15 {A41R:G -> A40R:A: adjacent_3p downward } 0 16 {A41R:G -> A42R:U: adjacent_5p upward } 0 17 {A42R:U -> A41R:G: adjacent_3p downward } 0 18 {A42R:U -> A43R:C: adjacent_5p } 0 19 {A43R:C -> A42R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A19R:A 0 1 A20R:C 0 2 A21R:U 0 3 A22R:U 0 4 A39R:A 0 5 A40R:A 0 6 A41R:G 0 7 A42R:U 0 [Edges] 0 {A19R:A -> A20R:C: adjacent_5p upward } 0 1 {A20R:C -> A19R:A: adjacent_3p downward } 0 2 {A19R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A42R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A20R:C -> A21R:U: adjacent_5p } 0 5 {A21R:U -> A20R:C: adjacent_3p } 0 6 {A20R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A41R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A21R:U -> A22R:U: adjacent_5p upward } 0 9 {A22R:U -> A21R:U: adjacent_3p downward } 0 10 {A21R:U -> A40R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A40R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A22R:U -> A39R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A39R:A -> A22R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A39R:A -> A40R:A: adjacent_5p upward } 0 15 {A40R:A -> A39R:A: adjacent_3p downward } 0 16 {A40R:A -> A41R:G: adjacent_5p upward } 0 17 {A41R:G -> A40R:A: adjacent_3p downward } 0 18 {A41R:G -> A42R:U: adjacent_5p upward } 0 19 {A42R:U -> A41R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A20R:C 0 1 A21R:U 0 2 A22R:U 0 3 A23R:U 0 4 A38R:A 0 5 A39R:A 0 6 A40R:A 0 7 A41R:G 0 [Edges] 0 {A20R:C -> A21R:U: adjacent_5p } 0 1 {A21R:U -> A20R:C: adjacent_3p } 0 2 {A20R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A41R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A21R:U -> A22R:U: adjacent_5p upward } 0 5 {A22R:U -> A21R:U: adjacent_3p downward } 0 6 {A21R:U -> A40R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A40R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A22R:U -> A23R:U: adjacent_5p } 0 9 {A23R:U -> A22R:U: adjacent_3p } 0 10 {A22R:U -> A39R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A39R:A -> A22R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A23R:U -> A38R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A38R:A -> A23R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A38R:A -> A39R:A: adjacent_5p upward } 0 15 {A39R:A -> A38R:A: adjacent_3p downward } 0 16 {A39R:A -> A40R:A: adjacent_5p upward } 0 17 {A40R:A -> A39R:A: adjacent_3p downward } 0 18 {A40R:A -> A41R:G: adjacent_5p upward } 0 19 {A41R:G -> A40R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A691R:C 0 1 A692R:G 0 2 A693R:A 0 3 A694R:G 0 4 A702R:C 0 5 A703R:U 0 6 A704R:C 0 7 A705R:G 0 [Edges] 0 {A691R:C -> A692R:G: adjacent_5p } 0 1 {A692R:G -> A691R:C: adjacent_3p } 0 2 {A691R:C -> A705R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A705R:G -> A691R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A692R:G -> A693R:A: adjacent_5p } 0 5 {A693R:A -> A692R:G: adjacent_3p } 0 6 {A692R:G -> A704R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A704R:C -> A692R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A693R:A -> A694R:G: adjacent_5p upward } 0 9 {A694R:G -> A693R:A: adjacent_3p downward } 0 10 {A693R:A -> A703R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A703R:U -> A693R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A694R:G -> A702R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A702R:C -> A694R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A702R:C -> A703R:U: adjacent_5p } 0 15 {A703R:U -> A702R:C: adjacent_3p } 0 16 {A703R:U -> A704R:C: adjacent_5p } 0 17 {A704R:C -> A703R:U: adjacent_3p } 0 18 {A704R:C -> A705R:G: adjacent_5p } 0 19 {A705R:G -> A704R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A692R:G 0 1 A693R:A 0 2 A694R:G 0 3 A695R:U 0 4 A701R:A 0 5 A702R:C 0 6 A703R:U 0 7 A704R:C 0 [Edges] 0 {A692R:G -> A693R:A: adjacent_5p } 0 1 {A693R:A -> A692R:G: adjacent_3p } 0 2 {A692R:G -> A704R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A704R:C -> A692R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A693R:A -> A694R:G: adjacent_5p upward } 0 5 {A694R:G -> A693R:A: adjacent_3p downward } 0 6 {A693R:A -> A703R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A703R:U -> A693R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A694R:G -> A695R:U: adjacent_5p } 0 9 {A695R:U -> A694R:G: adjacent_3p } 0 10 {A694R:G -> A702R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A702R:C -> A694R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A695R:U -> A701R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A701R:A -> A695R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A701R:A -> A702R:C: adjacent_5p upward } 0 15 {A702R:C -> A701R:A: adjacent_3p downward } 0 16 {A702R:C -> A703R:U: adjacent_5p } 0 17 {A703R:U -> A702R:C: adjacent_3p } 0 18 {A703R:U -> A704R:C: adjacent_5p } 0 19 {A704R:C -> A703R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:U 0 3 A5R:A 0 4 A27R:U 0 5 A28R:A 0 6 A29R:U 0 7 A30R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A30R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A29R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A29R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:U -> A5R:A: adjacent_5p } 0 9 {A5R:A -> A4R:U: adjacent_3p } 0 10 {A4R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A28R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:A -> A27R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A27R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A5R:A -> A28R:A: outward } 0 15 {A28R:A -> A5R:A: outward } 0 16 {A27R:U -> A28R:A: adjacent_5p } 0 17 {A28R:A -> A27R:U: adjacent_3p } 0 18 {A28R:A -> A29R:U: adjacent_5p upward } 0 19 {A29R:U -> A28R:A: adjacent_3p downward } 0 20 {A29R:U -> A30R:C: adjacent_5p upward } 0 21 {A30R:C -> A29R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:U 0 2 A5R:A 0 3 A6R:U 0 4 A26R:A 0 5 A27R:U 0 6 A28R:A 0 7 A29R:U 0 [Edges] 0 {A3R:A -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A29R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A29R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:U -> A5R:A: adjacent_5p } 0 5 {A5R:A -> A4R:U: adjacent_3p } 0 6 {A4R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A28R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:A -> A6R:U: adjacent_5p upward } 0 9 {A6R:U -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> A27R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A27R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:A -> A28R:A: outward } 0 13 {A28R:A -> A5R:A: outward } 0 14 {A6R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A26R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A26R:A -> A27R:U: adjacent_5p upward } 0 17 {A27R:U -> A26R:A: adjacent_3p downward } 0 18 {A27R:U -> A28R:A: adjacent_5p } 0 19 {A28R:A -> A27R:U: adjacent_3p } 0 20 {A28R:A -> A29R:U: adjacent_5p upward } 0 21 {A29R:U -> A28R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:A 0 1 A8R:U 0 2 A9R:G 0 3 A10R:A 0 4 A21R:U 0 5 A22R:C 0 6 A23R:A 0 7 A24R:G 0 [Edges] 0 {A7R:A -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:A: adjacent_3p downward } 0 2 {A7R:A -> A24R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {A24R:G -> A7R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A8R:U -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> A23R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A23R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:G -> A10R:A: adjacent_5p upward } 0 9 {A10R:A -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A22R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:G -> A23R:A: outward } 0 13 {A23R:A -> A9R:G: outward } 0 14 {A10R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A21R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A21R:U -> A22R:C: adjacent_5p } 0 17 {A22R:C -> A21R:U: adjacent_3p } 0 18 {A22R:C -> A23R:A: adjacent_5p upward } 0 19 {A23R:A -> A22R:C: adjacent_3p downward } 0 20 {A23R:A -> A24R:G: adjacent_5p upward } 0 21 {A24R:G -> A23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:G 0 2 A10R:A 0 3 A11R:U 0 4 A20R:A 0 5 A21R:U 0 6 A22R:C 0 7 A23R:A 0 [Edges] 0 {A8R:U -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:U: adjacent_3p downward } 0 2 {A8R:U -> A23R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A23R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:G -> A10R:A: adjacent_5p upward } 0 5 {A10R:A -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> A23R:A: outward } 0 9 {A23R:A -> A9R:G: outward } 0 10 {A10R:A -> A11R:U: adjacent_5p upward } 0 11 {A11R:U -> A10R:A: adjacent_3p downward } 0 12 {A10R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A21R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A11R:U -> A20R:A: pairing antiparallel cis Ws/Ww } 0 15 {A20R:A -> A11R:U: pairing antiparallel cis Ww/Ws } 0 16 {A20R:A -> A21R:U: adjacent_5p upward } 0 17 {A21R:U -> A20R:A: adjacent_3p downward } 0 18 {A21R:U -> A22R:C: adjacent_5p } 0 19 {A22R:C -> A21R:U: adjacent_3p } 0 20 {A22R:C -> A23R:A: adjacent_5p upward } 0 21 {A23R:A -> A22R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:A 0 2 A11R:U 0 3 A12R:A 0 4 A19R:G 0 5 A20R:A 0 6 A21R:U 0 7 A22R:C 0 [Edges] 0 {A9R:G -> A10R:A: adjacent_5p upward } 0 1 {A10R:A -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:A -> A11R:U: adjacent_5p upward } 0 5 {A11R:U -> A10R:A: adjacent_3p downward } 0 6 {A10R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A21R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:U -> A12R:A: adjacent_5p } 0 9 {A12R:A -> A11R:U: adjacent_3p } 0 10 {A11R:U -> A20R:A: pairing antiparallel cis Ws/Ww } 0 11 {A20R:A -> A11R:U: pairing antiparallel cis Ww/Ws } 0 12 {A12R:A -> A19R:G: pairing parallel cis one_hbond 61 Wh/Hh } 0 13 {A19R:G -> A12R:A: pairing parallel cis one_hbond 61 Hh/Wh } 0 14 {A12R:A -> A20R:A: outward } 0 15 {A20R:A -> A12R:A: outward } 0 16 {A19R:G -> A20R:A: adjacent_5p } 0 17 {A20R:A -> A19R:G: adjacent_3p } 0 18 {A20R:A -> A21R:U: adjacent_5p upward } 0 19 {A21R:U -> A20R:A: adjacent_3p downward } 0 20 {A21R:U -> A22R:C: adjacent_5p } 0 21 {A22R:C -> A21R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:U 0 3 A5R:A 0 4 A27R:U 0 5 A28R:A 0 6 A29R:U 0 7 A30R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A30R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A29R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A29R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:U -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:U: adjacent_3p downward } 0 10 {A4R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A28R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:A -> A27R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A27R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A5R:A -> A28R:A: outward } 0 15 {A28R:A -> A5R:A: outward } 0 16 {A27R:U -> A28R:A: adjacent_5p } 0 17 {A28R:A -> A27R:U: adjacent_3p } 0 18 {A28R:A -> A29R:U: adjacent_5p upward } 0 19 {A29R:U -> A28R:A: adjacent_3p downward } 0 20 {A29R:U -> A30R:C: adjacent_5p upward } 0 21 {A30R:C -> A29R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:U 0 2 A5R:A 0 3 A6R:U 0 4 A26R:A 0 5 A27R:U 0 6 A28R:A 0 7 A29R:U 0 [Edges] 0 {A3R:A -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A29R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A29R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:U -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:U: adjacent_3p downward } 0 6 {A4R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A28R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:A -> A6R:U: adjacent_5p upward } 0 9 {A6R:U -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> A27R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A27R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:A -> A28R:A: outward } 0 13 {A28R:A -> A5R:A: outward } 0 14 {A6R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A26R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A26R:A -> A27R:U: adjacent_5p upward } 0 17 {A27R:U -> A26R:A: adjacent_3p downward } 0 18 {A27R:U -> A28R:A: adjacent_5p } 0 19 {A28R:A -> A27R:U: adjacent_3p } 0 20 {A28R:A -> A29R:U: adjacent_5p upward } 0 21 {A29R:U -> A28R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:G 0 2 A10R:A 0 3 A11R:U 0 4 A20R:A 0 5 A21R:U 0 6 A22R:C 0 7 A23R:A 0 [Edges] 0 {A8R:U -> A9R:G: adjacent_5p } 0 1 {A9R:G -> A8R:U: adjacent_3p } 0 2 {A8R:U -> A23R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A23R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:G -> A10R:A: adjacent_5p upward } 0 5 {A10R:A -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> A23R:A: outward } 0 9 {A23R:A -> A9R:G: outward } 0 10 {A10R:A -> A11R:U: adjacent_5p upward } 0 11 {A11R:U -> A10R:A: adjacent_3p downward } 0 12 {A10R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A21R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A11R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A20R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A20R:A -> A21R:U: adjacent_5p upward } 0 17 {A21R:U -> A20R:A: adjacent_3p downward } 0 18 {A21R:U -> A22R:C: adjacent_5p } 0 19 {A22R:C -> A21R:U: adjacent_3p } 0 20 {A22R:C -> A23R:A: adjacent_5p } 0 21 {A23R:A -> A22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:A 0 3 A5R:A 0 4 A23R:U 0 5 A24R:U 0 6 A25R:A 0 7 A26R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A26R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A25R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A24R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A4R:A -> A25R:A: outward } 0 13 {A25R:A -> A4R:A: outward } 0 14 {A5R:A -> A23R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A23R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A23R:U -> A24R:U: adjacent_5p upward } 0 17 {A24R:U -> A23R:U: adjacent_3p downward } 0 18 {A24R:U -> A25R:A: adjacent_5p } 0 19 {A25R:A -> A24R:U: adjacent_3p } 0 20 {A25R:A -> A26R:C: adjacent_5p upward } 0 21 {A26R:C -> A25R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:A 0 2 A5R:A 0 3 A6R:C 0 4 A22R:G 0 5 A23R:U 0 6 A24R:U 0 7 A25R:A 0 [Edges] 0 {A3R:U -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A25R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:A -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A24R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A25R:A: outward } 0 9 {A25R:A -> A4R:A: outward } 0 10 {A5R:A -> A6R:C: adjacent_5p upward } 0 11 {A6R:C -> A5R:A: adjacent_3p downward } 0 12 {A5R:A -> A23R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A23R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A6R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A22R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A22R:G -> A23R:U: adjacent_5p upward } 0 17 {A23R:U -> A22R:G: adjacent_3p downward } 0 18 {A23R:U -> A24R:U: adjacent_5p upward } 0 19 {A24R:U -> A23R:U: adjacent_3p downward } 0 20 {A24R:U -> A25R:A: adjacent_5p } 0 21 {A25R:A -> A24R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:A 0 2 A6R:C 0 3 A7R:A 0 4 A21R:U 0 5 A22R:G 0 6 A23R:U 0 7 A24R:U 0 [Edges] 0 {A4R:A -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A24R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:A -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> A23R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A23R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:C -> A7R:A: adjacent_5p upward } 0 9 {A7R:A -> A6R:C: adjacent_3p downward } 0 10 {A6R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A22R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A21R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A7R:A -> A22R:G: outward } 0 15 {A22R:G -> A7R:A: outward } 0 16 {A21R:U -> A22R:G: adjacent_5p } 0 17 {A22R:G -> A21R:U: adjacent_3p } 0 18 {A22R:G -> A23R:U: adjacent_5p upward } 0 19 {A23R:U -> A22R:G: adjacent_3p downward } 0 20 {A23R:U -> A24R:U: adjacent_5p upward } 0 21 {A24R:U -> A23R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:C 0 2 A7R:A 0 3 A8R:A 0 4 A20R:U 0 5 A21R:U 0 6 A22R:G 0 7 A23R:U 0 [Edges] 0 {A5R:A -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> A23R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A23R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:C -> A7R:A: adjacent_5p upward } 0 5 {A7R:A -> A6R:C: adjacent_3p downward } 0 6 {A6R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:A -> A8R:A: adjacent_5p upward } 0 9 {A8R:A -> A7R:A: adjacent_3p downward } 0 10 {A7R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A21R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:A -> A22R:G: outward } 0 13 {A22R:G -> A7R:A: outward } 0 14 {A8R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A20R:U -> A8R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A20R:U -> A21R:U: adjacent_5p upward } 0 17 {A21R:U -> A20R:U: adjacent_3p downward } 0 18 {A21R:U -> A22R:G: adjacent_5p } 0 19 {A22R:G -> A21R:U: adjacent_3p } 0 20 {A22R:G -> A23R:U: adjacent_5p upward } 0 21 {A23R:U -> A22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:A 0 2 A8R:A 0 3 A9R:U 0 4 A19R:G 0 5 A20R:U 0 6 A21R:U 0 7 A22R:G 0 [Edges] 0 {A6R:C -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:C: adjacent_3p downward } 0 2 {A6R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:A -> A8R:A: adjacent_5p upward } 0 5 {A8R:A -> A7R:A: adjacent_3p downward } 0 6 {A7R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A21R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:A -> A22R:G: outward } 0 9 {A22R:G -> A7R:A: outward } 0 10 {A8R:A -> A9R:U: adjacent_5p upward } 0 11 {A9R:U -> A8R:A: adjacent_3p downward } 0 12 {A8R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A20R:U -> A8R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A9R:U -> A19R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A19R:G -> A9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A19R:G -> A20R:U: adjacent_5p upward } 0 17 {A20R:U -> A19R:G: adjacent_3p downward } 0 18 {A20R:U -> A21R:U: adjacent_5p upward } 0 19 {A21R:U -> A20R:U: adjacent_3p downward } 0 20 {A21R:U -> A22R:G: adjacent_5p } 0 21 {A22R:G -> A21R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A7R:A 0 1 A8R:A 0 2 A9R:U 0 3 A10R:A 0 4 A18R:U 0 5 A19R:G 0 6 A20R:U 0 7 A21R:U 0 [Edges] 0 {A7R:A -> A8R:A: adjacent_5p upward } 0 1 {A8R:A -> A7R:A: adjacent_3p downward } 0 2 {A7R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A21R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A8R:A -> A9R:U: adjacent_5p upward } 0 5 {A9R:U -> A8R:A: adjacent_3p downward } 0 6 {A8R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A20R:U -> A8R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:U -> A10R:A: adjacent_5p upward } 0 9 {A10R:A -> A9R:U: adjacent_3p downward } 0 10 {A9R:U -> A19R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A19R:G -> A9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A10R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A18R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A10R:A -> A19R:G: outward } 0 15 {A19R:G -> A10R:A: outward } 0 16 {A18R:U -> A19R:G: adjacent_5p } 0 17 {A19R:G -> A18R:U: adjacent_3p } 0 18 {A19R:G -> A20R:U: adjacent_5p upward } 0 19 {A20R:U -> A19R:G: adjacent_3p downward } 0 20 {A20R:U -> A21R:U: adjacent_5p upward } 0 21 {A21R:U -> A20R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:A 0 1 A9R:U 0 2 A10R:A 0 3 A11R:U 0 4 A17R:A 0 5 A18R:U 0 6 A19R:G 0 7 A20R:U 0 [Edges] 0 {A8R:A -> A9R:U: adjacent_5p upward } 0 1 {A9R:U -> A8R:A: adjacent_3p downward } 0 2 {A8R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A20R:U -> A8R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:U -> A10R:A: adjacent_5p upward } 0 5 {A10R:A -> A9R:U: adjacent_3p downward } 0 6 {A9R:U -> A19R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {A19R:G -> A9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A10R:A -> A11R:U: adjacent_5p upward } 0 9 {A11R:U -> A10R:A: adjacent_3p downward } 0 10 {A10R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A18R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A10R:A -> A19R:G: outward } 0 13 {A19R:G -> A10R:A: outward } 0 14 {A11R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A17R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A17R:A -> A18R:U: adjacent_5p upward } 0 17 {A18R:U -> A17R:A: adjacent_3p downward } 0 18 {A18R:U -> A19R:G: adjacent_5p } 0 19 {A19R:G -> A18R:U: adjacent_3p } 0 20 {A19R:G -> A20R:U: adjacent_5p upward } 0 21 {A20R:U -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A9R:U 0 1 A10R:A 0 2 A11R:U 0 3 A12R:G 0 4 A16R:A 0 5 A17R:A 0 6 A18R:U 0 7 A19R:G 0 [Edges] 0 {A9R:U -> A10R:A: adjacent_5p upward } 0 1 {A10R:A -> A9R:U: adjacent_3p downward } 0 2 {A9R:U -> A19R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A19R:G -> A9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A10R:A -> A11R:U: adjacent_5p upward } 0 5 {A11R:U -> A10R:A: adjacent_3p downward } 0 6 {A10R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A18R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A10R:A -> A19R:G: outward } 0 9 {A19R:G -> A10R:A: outward } 0 10 {A11R:U -> A12R:G: adjacent_5p upward } 0 11 {A12R:G -> A11R:U: adjacent_3p downward } 0 12 {A11R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A17R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A12R:G -> A16R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {A16R:A -> A12R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {A16R:A -> A17R:A: adjacent_5p upward } 0 17 {A17R:A -> A16R:A: adjacent_3p downward } 0 18 {A17R:A -> A18R:U: adjacent_5p upward } 0 19 {A18R:U -> A17R:A: adjacent_3p downward } 0 20 {A18R:U -> A19R:G: adjacent_5p } 0 21 {A19R:G -> A18R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C2R:G 0 1 C3R:C 0 2 C4R:U 0 3 C5R:G 0 4 D3R:C 0 5 D4R:U 0 6 D5R:G 0 7 D6R:U 0 [Edges] 0 {C2R:G -> C3R:C: adjacent_5p upward } 0 1 {C3R:C -> C2R:G: adjacent_3p downward } 0 2 {C2R:G -> D6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {D6R:U -> C2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {C3R:C -> C4R:U: adjacent_5p upward } 0 5 {C4R:U -> C3R:C: adjacent_3p downward } 0 6 {C3R:C -> D5R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D5R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:U -> C5R:G: adjacent_5p upward } 0 9 {C5R:G -> C4R:U: adjacent_3p downward } 0 10 {C5R:G -> D3R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D3R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D3R:C -> D4R:U: adjacent_5p upward } 0 13 {D4R:U -> D3R:C: adjacent_3p downward } 0 14 {D4R:U -> D5R:G: adjacent_5p upward } 0 15 {D5R:G -> D4R:U: adjacent_3p downward } 0 16 {D5R:G -> D6R:U: adjacent_5p upward } 0 17 {D6R:U -> D5R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 C3R:C 0 1 C4R:U 0 2 C5R:G 0 3 C6R:U 0 4 D2R:G 0 5 D3R:C 0 6 D4R:U 0 7 D5R:G 0 [Edges] 0 {C3R:C -> C4R:U: adjacent_5p upward } 0 1 {C4R:U -> C3R:C: adjacent_3p downward } 0 2 {C3R:C -> D5R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D5R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C4R:U -> C5R:G: adjacent_5p upward } 0 5 {C5R:G -> C4R:U: adjacent_3p downward } 0 6 {C5R:G -> C6R:U: adjacent_5p upward } 0 7 {C6R:U -> C5R:G: adjacent_3p downward } 0 8 {C5R:G -> D3R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {D3R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {C6R:U -> D2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {D2R:G -> C6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {D2R:G -> D3R:C: adjacent_5p upward } 0 13 {D3R:C -> D2R:G: adjacent_3p downward } 0 14 {D3R:C -> D4R:U: adjacent_5p upward } 0 15 {D4R:U -> D3R:C: adjacent_3p downward } 0 16 {D4R:U -> D5R:G: adjacent_5p upward } 0 17 {D5R:G -> D4R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 C2R:G 0 1 C3R:C 0 2 C4R:G 0 3 C5R:A 0 4 D20R:U 0 5 D21R:C 0 6 D22R:G 0 7 D23R:C 0 [Edges] 0 {C2R:G -> C3R:C: adjacent_5p upward } 0 1 {C3R:C -> C2R:G: adjacent_3p downward } 0 2 {C2R:G -> D23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D23R:C -> C2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C3R:C -> C4R:G: adjacent_5p upward } 0 5 {C4R:G -> C3R:C: adjacent_3p downward } 0 6 {C3R:C -> D22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D22R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:G -> C5R:A: adjacent_5p upward } 0 9 {C5R:A -> C4R:G: adjacent_3p downward } 0 10 {C4R:G -> D21R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D21R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C4R:G -> D22R:G: outward } 0 13 {D22R:G -> C4R:G: outward } 0 14 {C5R:A -> D20R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {D20R:U -> C5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {D20R:U -> D21R:C: adjacent_5p } 0 17 {D21R:C -> D20R:U: adjacent_3p } 0 18 {D21R:C -> D22R:G: adjacent_5p } 0 19 {D22R:G -> D21R:C: adjacent_3p } 0 20 {D22R:G -> D23R:C: adjacent_5p upward } 0 21 {D23R:C -> D22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C3R:C 0 1 C4R:G 0 2 C5R:A 0 3 C6R:A 0 4 D19R:U 0 5 D20R:U 0 6 D21R:C 0 7 D22R:G 0 [Edges] 0 {C3R:C -> C4R:G: adjacent_5p upward } 0 1 {C4R:G -> C3R:C: adjacent_3p downward } 0 2 {C3R:C -> D22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D22R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C4R:G -> C5R:A: adjacent_5p upward } 0 5 {C5R:A -> C4R:G: adjacent_3p downward } 0 6 {C4R:G -> D21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D21R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:G -> D22R:G: outward } 0 9 {D22R:G -> C4R:G: outward } 0 10 {C5R:A -> C6R:A: adjacent_5p upward } 0 11 {C6R:A -> C5R:A: adjacent_3p downward } 0 12 {C5R:A -> D20R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {D20R:U -> C5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {C6R:A -> D19R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {D19R:U -> C6R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {D19R:U -> D20R:U: adjacent_5p upward } 0 17 {D20R:U -> D19R:U: adjacent_3p downward } 0 18 {D20R:U -> D21R:C: adjacent_5p } 0 19 {D21R:C -> D20R:U: adjacent_3p } 0 20 {D21R:C -> D22R:G: adjacent_5p } 0 21 {D22R:G -> D21R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C4R:G 0 1 C5R:A 0 2 C6R:A 0 3 C7R:U 0 4 D18R:A 0 5 D19R:U 0 6 D20R:U 0 7 D21R:C 0 [Edges] 0 {C4R:G -> C5R:A: adjacent_5p upward } 0 1 {C5R:A -> C4R:G: adjacent_3p downward } 0 2 {C4R:G -> D21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D21R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C5R:A -> C6R:A: adjacent_5p upward } 0 5 {C6R:A -> C5R:A: adjacent_3p downward } 0 6 {C5R:A -> D20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D20R:U -> C5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C6R:A -> C7R:U: adjacent_5p upward } 0 9 {C7R:U -> C6R:A: adjacent_3p downward } 0 10 {C6R:A -> D19R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D19R:U -> C6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C7R:U -> D18R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {D18R:A -> C7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {D18R:A -> D19R:U: adjacent_5p upward } 0 15 {D19R:U -> D18R:A: adjacent_3p downward } 0 16 {D19R:U -> D20R:U: adjacent_5p upward } 0 17 {D20R:U -> D19R:U: adjacent_3p downward } 0 18 {D20R:U -> D21R:C: adjacent_5p } 0 19 {D21R:C -> D20R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C5R:A 0 1 C6R:A 0 2 C7R:U 0 3 C8R:U 0 4 D17R:A 0 5 D18R:A 0 6 D19R:U 0 7 D20R:U 0 [Edges] 0 {C5R:A -> C6R:A: adjacent_5p upward } 0 1 {C6R:A -> C5R:A: adjacent_3p downward } 0 2 {C5R:A -> D20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D20R:U -> C5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C6R:A -> C7R:U: adjacent_5p upward } 0 5 {C7R:U -> C6R:A: adjacent_3p downward } 0 6 {C6R:A -> D19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D19R:U -> C6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C7R:U -> C8R:U: adjacent_5p upward } 0 9 {C8R:U -> C7R:U: adjacent_3p downward } 0 10 {C7R:U -> D18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D18R:A -> C7R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C8R:U -> D17R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {D17R:A -> C8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {D17R:A -> D18R:A: adjacent_5p upward } 0 15 {D18R:A -> D17R:A: adjacent_3p downward } 0 16 {D18R:A -> D19R:U: adjacent_5p upward } 0 17 {D19R:U -> D18R:A: adjacent_3p downward } 0 18 {D19R:U -> D20R:U: adjacent_5p upward } 0 19 {D20R:U -> D19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C6R:A 0 1 C7R:U 0 2 C8R:U 0 3 C9R:C 0 4 D16R:G 0 5 D17R:A 0 6 D18R:A 0 7 D19R:U 0 [Edges] 0 {C6R:A -> C7R:U: adjacent_5p upward } 0 1 {C7R:U -> C6R:A: adjacent_3p downward } 0 2 {C6R:A -> D19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D19R:U -> C6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C7R:U -> C8R:U: adjacent_5p upward } 0 5 {C8R:U -> C7R:U: adjacent_3p downward } 0 6 {C7R:U -> D18R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D18R:A -> C7R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C8R:U -> C9R:C: adjacent_5p upward } 0 9 {C9R:C -> C8R:U: adjacent_3p downward } 0 10 {C8R:U -> D17R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D17R:A -> C8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C9R:C -> D16R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D16R:G -> C9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D16R:G -> D17R:A: adjacent_5p upward } 0 15 {D17R:A -> D16R:G: adjacent_3p downward } 0 16 {D17R:A -> D18R:A: adjacent_5p upward } 0 17 {D18R:A -> D17R:A: adjacent_3p downward } 0 18 {D18R:A -> D19R:U: adjacent_5p upward } 0 19 {D19R:U -> D18R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C7R:U 0 1 C8R:U 0 2 C9R:C 0 3 C10R:G 0 4 D15R:C 0 5 D16R:G 0 6 D17R:A 0 7 D18R:A 0 [Edges] 0 {C7R:U -> C8R:U: adjacent_5p upward } 0 1 {C8R:U -> C7R:U: adjacent_3p downward } 0 2 {C7R:U -> D18R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D18R:A -> C7R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C8R:U -> C9R:C: adjacent_5p upward } 0 5 {C9R:C -> C8R:U: adjacent_3p downward } 0 6 {C8R:U -> D17R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D17R:A -> C8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C9R:C -> C10R:G: adjacent_5p upward } 0 9 {C10R:G -> C9R:C: adjacent_3p downward } 0 10 {C9R:C -> D16R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D16R:G -> C9R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C10R:G -> D15R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D15R:C -> C10R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C10R:G -> D16R:G: outward } 0 15 {D16R:G -> C10R:G: outward } 0 16 {D15R:C -> D16R:G: adjacent_5p } 0 17 {D16R:G -> D15R:C: adjacent_3p } 0 18 {D16R:G -> D17R:A: adjacent_5p upward } 0 19 {D17R:A -> D16R:G: adjacent_3p downward } 0 20 {D17R:A -> D18R:A: adjacent_5p upward } 0 21 {D18R:A -> D17R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C8R:U 0 1 C9R:C 0 2 C10R:G 0 3 C11R:C 0 4 D14R:G 0 5 D15R:C 0 6 D16R:G 0 7 D17R:A 0 [Edges] 0 {C8R:U -> C9R:C: adjacent_5p upward } 0 1 {C9R:C -> C8R:U: adjacent_3p downward } 0 2 {C8R:U -> D17R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D17R:A -> C8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C9R:C -> C10R:G: adjacent_5p upward } 0 5 {C10R:G -> C9R:C: adjacent_3p downward } 0 6 {C9R:C -> D16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D16R:G -> C9R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C10R:G -> C11R:C: adjacent_5p upward } 0 9 {C11R:C -> C10R:G: adjacent_3p downward } 0 10 {C10R:G -> D15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D15R:C -> C10R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C10R:G -> D16R:G: outward } 0 13 {D16R:G -> C10R:G: outward } 0 14 {C11R:C -> D14R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D14R:G -> C11R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D14R:G -> D15R:C: adjacent_5p upward } 0 17 {D15R:C -> D14R:G: adjacent_3p downward } 0 18 {D15R:C -> D16R:G: adjacent_5p } 0 19 {D16R:G -> D15R:C: adjacent_3p } 0 20 {D16R:G -> D17R:A: adjacent_5p upward } 0 21 {D17R:A -> D16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E2R:G 0 1 E3R:C 0 2 E4R:G 0 3 E5R:A 0 4 F20R:U 0 5 F21R:C 0 6 F22R:G 0 7 F23R:C 0 [Edges] 0 {E2R:G -> E3R:C: adjacent_5p upward } 0 1 {E3R:C -> E2R:G: adjacent_3p downward } 0 2 {E2R:G -> F23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {F23R:C -> E2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E3R:C -> E4R:G: adjacent_5p } 0 5 {E4R:G -> E3R:C: adjacent_3p } 0 6 {E3R:C -> F22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {F22R:G -> E3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E4R:G -> E5R:A: adjacent_5p upward } 0 9 {E5R:A -> E4R:G: adjacent_3p downward } 0 10 {E4R:G -> F21R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {F21R:C -> E4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E4R:G -> F22R:G: outward } 0 13 {F22R:G -> E4R:G: outward } 0 14 {E5R:A -> F20R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {F20R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {F20R:U -> F21R:C: adjacent_5p } 0 17 {F21R:C -> F20R:U: adjacent_3p } 0 18 {F21R:C -> F22R:G: adjacent_5p upward } 0 19 {F22R:G -> F21R:C: adjacent_3p downward } 0 20 {F22R:G -> F23R:C: adjacent_5p upward } 0 21 {F23R:C -> F22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E3R:C 0 1 E4R:G 0 2 E5R:A 0 3 E6R:A 0 4 F19R:U 0 5 F20R:U 0 6 F21R:C 0 7 F22R:G 0 [Edges] 0 {E3R:C -> E4R:G: adjacent_5p } 0 1 {E4R:G -> E3R:C: adjacent_3p } 0 2 {E3R:C -> F22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {F22R:G -> E3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E4R:G -> E5R:A: adjacent_5p upward } 0 5 {E5R:A -> E4R:G: adjacent_3p downward } 0 6 {E4R:G -> F21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {F21R:C -> E4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E4R:G -> F22R:G: outward } 0 9 {F22R:G -> E4R:G: outward } 0 10 {E5R:A -> E6R:A: adjacent_5p upward } 0 11 {E6R:A -> E5R:A: adjacent_3p downward } 0 12 {E5R:A -> F20R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {F20R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {E6R:A -> F19R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {F19R:U -> E6R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {F19R:U -> F20R:U: adjacent_5p upward } 0 17 {F20R:U -> F19R:U: adjacent_3p downward } 0 18 {F20R:U -> F21R:C: adjacent_5p } 0 19 {F21R:C -> F20R:U: adjacent_3p } 0 20 {F21R:C -> F22R:G: adjacent_5p upward } 0 21 {F22R:G -> F21R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 E4R:G 0 1 E5R:A 0 2 E6R:A 0 3 E7R:U 0 4 F18R:A 0 5 F19R:U 0 6 F20R:U 0 7 F21R:C 0 [Edges] 0 {E4R:G -> E5R:A: adjacent_5p upward } 0 1 {E5R:A -> E4R:G: adjacent_3p downward } 0 2 {E4R:G -> F21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {F21R:C -> E4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E5R:A -> E6R:A: adjacent_5p upward } 0 5 {E6R:A -> E5R:A: adjacent_3p downward } 0 6 {E5R:A -> F20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {F20R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {E6R:A -> E7R:U: adjacent_5p upward } 0 9 {E7R:U -> E6R:A: adjacent_3p downward } 0 10 {E6R:A -> F19R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {F19R:U -> E6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {E7R:U -> F18R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {F18R:A -> E7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {F18R:A -> F19R:U: adjacent_5p upward } 0 15 {F19R:U -> F18R:A: adjacent_3p downward } 0 16 {F19R:U -> F20R:U: adjacent_5p upward } 0 17 {F20R:U -> F19R:U: adjacent_3p downward } 0 18 {F20R:U -> F21R:C: adjacent_5p } 0 19 {F21R:C -> F20R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E5R:A 0 1 E6R:A 0 2 E7R:U 0 3 E8R:U 0 4 F17R:A 0 5 F18R:A 0 6 F19R:U 0 7 F20R:U 0 [Edges] 0 {E5R:A -> E6R:A: adjacent_5p upward } 0 1 {E6R:A -> E5R:A: adjacent_3p downward } 0 2 {E5R:A -> F20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {F20R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {E6R:A -> E7R:U: adjacent_5p upward } 0 5 {E7R:U -> E6R:A: adjacent_3p downward } 0 6 {E6R:A -> F19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {F19R:U -> E6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {E7R:U -> E8R:U: adjacent_5p upward } 0 9 {E8R:U -> E7R:U: adjacent_3p downward } 0 10 {E7R:U -> F18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {F18R:A -> E7R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {E8R:U -> F17R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {F17R:A -> E8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {F17R:A -> F18R:A: adjacent_5p upward } 0 15 {F18R:A -> F17R:A: adjacent_3p downward } 0 16 {F18R:A -> F19R:U: adjacent_5p upward } 0 17 {F19R:U -> F18R:A: adjacent_3p downward } 0 18 {F19R:U -> F20R:U: adjacent_5p upward } 0 19 {F20R:U -> F19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E6R:A 0 1 E7R:U 0 2 E8R:U 0 3 E9R:C 0 4 F16R:G 0 5 F17R:A 0 6 F18R:A 0 7 F19R:U 0 [Edges] 0 {E6R:A -> E7R:U: adjacent_5p upward } 0 1 {E7R:U -> E6R:A: adjacent_3p downward } 0 2 {E6R:A -> F19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {F19R:U -> E6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {E7R:U -> E8R:U: adjacent_5p upward } 0 5 {E8R:U -> E7R:U: adjacent_3p downward } 0 6 {E7R:U -> F18R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {F18R:A -> E7R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {E8R:U -> E9R:C: adjacent_5p upward } 0 9 {E9R:C -> E8R:U: adjacent_3p downward } 0 10 {E8R:U -> F17R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {F17R:A -> E8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {E9R:C -> F16R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {F16R:G -> E9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {F16R:G -> F17R:A: adjacent_5p upward } 0 15 {F17R:A -> F16R:G: adjacent_3p downward } 0 16 {F17R:A -> F18R:A: adjacent_5p upward } 0 17 {F18R:A -> F17R:A: adjacent_3p downward } 0 18 {F18R:A -> F19R:U: adjacent_5p upward } 0 19 {F19R:U -> F18R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E7R:U 0 1 E8R:U 0 2 E9R:C 0 3 E10R:G 0 4 F15R:C 0 5 F16R:G 0 6 F17R:A 0 7 F18R:A 0 [Edges] 0 {E7R:U -> E8R:U: adjacent_5p upward } 0 1 {E8R:U -> E7R:U: adjacent_3p downward } 0 2 {E7R:U -> F18R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {F18R:A -> E7R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {E8R:U -> E9R:C: adjacent_5p upward } 0 5 {E9R:C -> E8R:U: adjacent_3p downward } 0 6 {E8R:U -> F17R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {F17R:A -> E8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {E9R:C -> E10R:G: adjacent_5p } 0 9 {E10R:G -> E9R:C: adjacent_3p } 0 10 {E9R:C -> F16R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {F16R:G -> E9R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {E10R:G -> F15R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {F15R:C -> E10R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {E10R:G -> F16R:G: outward } 0 15 {F16R:G -> E10R:G: outward } 0 16 {F15R:C -> F16R:G: adjacent_5p upward } 0 17 {F16R:G -> F15R:C: adjacent_3p downward } 0 18 {F16R:G -> F17R:A: adjacent_5p upward } 0 19 {F17R:A -> F16R:G: adjacent_3p downward } 0 20 {F17R:A -> F18R:A: adjacent_5p upward } 0 21 {F18R:A -> F17R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E8R:U 0 1 E9R:C 0 2 E10R:G 0 3 E11R:C 0 4 F14R:G 0 5 F15R:C 0 6 F16R:G 0 7 F17R:A 0 [Edges] 0 {E8R:U -> E9R:C: adjacent_5p upward } 0 1 {E9R:C -> E8R:U: adjacent_3p downward } 0 2 {E8R:U -> F17R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {F17R:A -> E8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {E9R:C -> E10R:G: adjacent_5p } 0 5 {E10R:G -> E9R:C: adjacent_3p } 0 6 {E9R:C -> F16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {F16R:G -> E9R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E10R:G -> E11R:C: adjacent_5p upward } 0 9 {E11R:C -> E10R:G: adjacent_3p downward } 0 10 {E10R:G -> F15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {F15R:C -> E10R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E10R:G -> F16R:G: outward } 0 13 {F16R:G -> E10R:G: outward } 0 14 {E11R:C -> F14R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {F14R:G -> E11R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {F14R:G -> F15R:C: adjacent_5p upward } 0 17 {F15R:C -> F14R:G: adjacent_3p downward } 0 18 {F15R:C -> F16R:G: adjacent_5p upward } 0 19 {F16R:G -> F15R:C: adjacent_3p downward } 0 20 {F16R:G -> F17R:A: adjacent_5p upward } 0 21 {F17R:A -> F16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 E2R:A 0 1 E3R:A 0 2 E4R:U 0 3 E5R:A 0 4 F20R:U 0 5 F21R:A 0 6 F22R:U 0 7 F23R:U 0 [Edges] 0 {E2R:A -> E3R:A: adjacent_5p upward } 0 1 {E3R:A -> E2R:A: adjacent_3p downward } 0 2 {E2R:A -> F23R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {F23R:U -> E2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {E3R:A -> E4R:U: adjacent_5p upward } 0 5 {E4R:U -> E3R:A: adjacent_3p downward } 0 6 {E3R:A -> F22R:U: pairing antiparallel cis Ww/Ws } 0 7 {F22R:U -> E3R:A: pairing antiparallel cis Ws/Ww } 0 8 {E4R:U -> E5R:A: adjacent_5p upward } 0 9 {E5R:A -> E4R:U: adjacent_3p downward } 0 10 {E4R:U -> F21R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {F21R:A -> E4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {E5R:A -> F20R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {F20R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {E5R:A -> F21R:A: outward } 0 15 {F21R:A -> E5R:A: outward } 0 16 {F20R:U -> F21R:A: adjacent_5p } 0 17 {F21R:A -> F20R:U: adjacent_3p } 0 18 {F21R:A -> F22R:U: adjacent_5p upward } 0 19 {F22R:U -> F21R:A: adjacent_3p downward } 0 20 {F22R:U -> F23R:U: adjacent_5p } 0 21 {F23R:U -> F22R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E3R:A 0 1 E4R:U 0 2 E5R:A 0 3 E6R:U 0 4 F19R:A 0 5 F20R:U 0 6 F21R:A 0 7 F22R:U 0 [Edges] 0 {E3R:A -> E4R:U: adjacent_5p upward } 0 1 {E4R:U -> E3R:A: adjacent_3p downward } 0 2 {E3R:A -> F22R:U: pairing antiparallel cis Ww/Ws } 0 3 {F22R:U -> E3R:A: pairing antiparallel cis Ws/Ww } 0 4 {E4R:U -> E5R:A: adjacent_5p upward } 0 5 {E5R:A -> E4R:U: adjacent_3p downward } 0 6 {E4R:U -> F21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {F21R:A -> E4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {E5R:A -> E6R:U: adjacent_5p upward } 0 9 {E6R:U -> E5R:A: adjacent_3p downward } 0 10 {E5R:A -> F20R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {F20R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {E5R:A -> F21R:A: outward } 0 13 {F21R:A -> E5R:A: outward } 0 14 {E6R:U -> F19R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {F19R:A -> E6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {F19R:A -> F20R:U: adjacent_5p upward } 0 17 {F20R:U -> F19R:A: adjacent_3p downward } 0 18 {F20R:U -> F21R:A: adjacent_5p } 0 19 {F21R:A -> F20R:U: adjacent_3p } 0 20 {F21R:A -> F22R:U: adjacent_5p upward } 0 21 {F22R:U -> F21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E4R:U 0 1 E5R:A 0 2 E6R:U 0 3 E7R:A 0 4 F18R:U 0 5 F19R:A 0 6 F20R:U 0 7 F21R:A 0 [Edges] 0 {E4R:U -> E5R:A: adjacent_5p upward } 0 1 {E5R:A -> E4R:U: adjacent_3p downward } 0 2 {E4R:U -> F21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {F21R:A -> E4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {E5R:A -> E6R:U: adjacent_5p upward } 0 5 {E6R:U -> E5R:A: adjacent_3p downward } 0 6 {E5R:A -> F20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {F20R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {E5R:A -> F21R:A: outward } 0 9 {F21R:A -> E5R:A: outward } 0 10 {E6R:U -> E7R:A: adjacent_5p } 0 11 {E7R:A -> E6R:U: adjacent_3p } 0 12 {E6R:U -> F19R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {F19R:A -> E6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {E7R:A -> F18R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {F18R:U -> E7R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {E7R:A -> F19R:A: outward } 0 17 {F19R:A -> E7R:A: outward } 0 18 {F18R:U -> F19R:A: adjacent_5p upward } 0 19 {F19R:A -> F18R:U: adjacent_3p downward } 0 20 {F19R:A -> F20R:U: adjacent_5p upward } 0 21 {F20R:U -> F19R:A: adjacent_3p downward } 0 22 {F20R:U -> F21R:A: adjacent_5p } 0 23 {F21R:A -> F20R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 E5R:A 0 1 E6R:U 0 2 E7R:A 0 3 E8R:U 0 4 F17R:A 0 5 F18R:U 0 6 F19R:A 0 7 F20R:U 0 [Edges] 0 {E5R:A -> E6R:U: adjacent_5p upward } 0 1 {E6R:U -> E5R:A: adjacent_3p downward } 0 2 {E5R:A -> F20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {F20R:U -> E5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {E6R:U -> E7R:A: adjacent_5p } 0 5 {E7R:A -> E6R:U: adjacent_3p } 0 6 {E6R:U -> F19R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {F19R:A -> E6R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {E7R:A -> E8R:U: adjacent_5p upward } 0 9 {E8R:U -> E7R:A: adjacent_3p downward } 0 10 {E7R:A -> F18R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {F18R:U -> E7R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {E7R:A -> F19R:A: outward } 0 13 {F19R:A -> E7R:A: outward } 0 14 {E8R:U -> F17R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {F17R:A -> E8R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {F17R:A -> F18R:U: adjacent_5p upward } 0 17 {F18R:U -> F17R:A: adjacent_3p downward } 0 18 {F18R:U -> F19R:A: adjacent_5p upward } 0 19 {F19R:A -> F18R:U: adjacent_3p downward } 0 20 {F19R:A -> F20R:U: adjacent_5p upward } 0 21 {F20R:U -> F19R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E6R:U 0 1 E7R:A 0 2 E8R:U 0 3 E9R:A 0 4 F16R:U 0 5 F17R:A 0 6 F18R:U 0 7 F19R:A 0 [Edges] 0 {E6R:U -> E7R:A: adjacent_5p } 0 1 {E7R:A -> E6R:U: adjacent_3p } 0 2 {E6R:U -> F19R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {F19R:A -> E6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {E7R:A -> E8R:U: adjacent_5p upward } 0 5 {E8R:U -> E7R:A: adjacent_3p downward } 0 6 {E7R:A -> F18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {F18R:U -> E7R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {E7R:A -> F19R:A: outward } 0 9 {F19R:A -> E7R:A: outward } 0 10 {E8R:U -> E9R:A: adjacent_5p upward } 0 11 {E9R:A -> E8R:U: adjacent_3p downward } 0 12 {E8R:U -> F17R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {F17R:A -> E8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {E9R:A -> F16R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {F16R:U -> E9R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {E9R:A -> F17R:A: outward } 0 17 {F17R:A -> E9R:A: outward } 0 18 {F16R:U -> F17R:A: adjacent_5p upward } 0 19 {F17R:A -> F16R:U: adjacent_3p downward } 0 20 {F17R:A -> F18R:U: adjacent_5p upward } 0 21 {F18R:U -> F17R:A: adjacent_3p downward } 0 22 {F18R:U -> F19R:A: adjacent_5p upward } 0 23 {F19R:A -> F18R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 E7R:A 0 1 E8R:U 0 2 E9R:A 0 3 E10R:U 0 4 F15R:A 0 5 F16R:U 0 6 F17R:A 0 7 F18R:U 0 [Edges] 0 {E7R:A -> E8R:U: adjacent_5p upward } 0 1 {E8R:U -> E7R:A: adjacent_3p downward } 0 2 {E7R:A -> F18R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {F18R:U -> E7R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {E8R:U -> E9R:A: adjacent_5p upward } 0 5 {E9R:A -> E8R:U: adjacent_3p downward } 0 6 {E8R:U -> F17R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {F17R:A -> E8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {E9R:A -> E10R:U: adjacent_5p upward } 0 9 {E10R:U -> E9R:A: adjacent_3p downward } 0 10 {E9R:A -> F16R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {F16R:U -> E9R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {E9R:A -> F17R:A: outward } 0 13 {F17R:A -> E9R:A: outward } 0 14 {E10R:U -> F15R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {F15R:A -> E10R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {F15R:A -> F16R:U: adjacent_5p upward } 0 17 {F16R:U -> F15R:A: adjacent_3p downward } 0 18 {F16R:U -> F17R:A: adjacent_5p upward } 0 19 {F17R:A -> F16R:U: adjacent_3p downward } 0 20 {F17R:A -> F18R:U: adjacent_5p upward } 0 21 {F18R:U -> F17R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E8R:U 0 1 E9R:A 0 2 E10R:U 0 3 E11R:U 0 4 F14R:A 0 5 F15R:A 0 6 F16R:U 0 7 F17R:A 0 [Edges] 0 {E8R:U -> E9R:A: adjacent_5p upward } 0 1 {E9R:A -> E8R:U: adjacent_3p downward } 0 2 {E8R:U -> F17R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {F17R:A -> E8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {E9R:A -> E10R:U: adjacent_5p upward } 0 5 {E10R:U -> E9R:A: adjacent_3p downward } 0 6 {E9R:A -> F16R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {F16R:U -> E9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {E9R:A -> F17R:A: outward } 0 9 {F17R:A -> E9R:A: outward } 0 10 {E10R:U -> E11R:U: adjacent_5p upward } 0 11 {E11R:U -> E10R:U: adjacent_3p downward } 0 12 {E10R:U -> F15R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {F15R:A -> E10R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {E11R:U -> F14R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {F14R:A -> E11R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {F14R:A -> F15R:A: adjacent_5p upward } 0 17 {F15R:A -> F14R:A: adjacent_3p downward } 0 18 {F15R:A -> F16R:U: adjacent_5p upward } 0 19 {F16R:U -> F15R:A: adjacent_3p downward } 0 20 {F16R:U -> F17R:A: adjacent_5p upward } 0 21 {F17R:A -> F16R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 G2R:A 0 1 G3R:A 0 2 G4R:U 0 3 G5R:A 0 4 H20R:U 0 5 H21R:A 0 6 H22R:U 0 7 H23R:U 0 [Edges] 0 {G2R:A -> G3R:A: adjacent_5p upward } 0 1 {G3R:A -> G2R:A: adjacent_3p downward } 0 2 {G2R:A -> H23R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {H23R:U -> G2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {G3R:A -> G4R:U: adjacent_5p upward } 0 5 {G4R:U -> G3R:A: adjacent_3p downward } 0 6 {G3R:A -> H22R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {H22R:U -> G3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {G4R:U -> G5R:A: adjacent_5p upward } 0 9 {G5R:A -> G4R:U: adjacent_3p downward } 0 10 {G4R:U -> H21R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {H21R:A -> G4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {G5R:A -> H20R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {H20R:U -> G5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {G5R:A -> H21R:A: outward } 0 15 {H21R:A -> G5R:A: outward } 0 16 {H20R:U -> H21R:A: adjacent_5p } 0 17 {H21R:A -> H20R:U: adjacent_3p } 0 18 {H21R:A -> H22R:U: adjacent_5p upward } 0 19 {H22R:U -> H21R:A: adjacent_3p downward } 0 20 {H22R:U -> H23R:U: adjacent_5p } 0 21 {H23R:U -> H22R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 G3R:A 0 1 G4R:U 0 2 G5R:A 0 3 G6R:U 0 4 H19R:A 0 5 H20R:U 0 6 H21R:A 0 7 H22R:U 0 [Edges] 0 {G3R:A -> G4R:U: adjacent_5p upward } 0 1 {G4R:U -> G3R:A: adjacent_3p downward } 0 2 {G3R:A -> H22R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {H22R:U -> G3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {G4R:U -> G5R:A: adjacent_5p upward } 0 5 {G5R:A -> G4R:U: adjacent_3p downward } 0 6 {G4R:U -> H21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {H21R:A -> G4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {G5R:A -> G6R:U: adjacent_5p upward } 0 9 {G6R:U -> G5R:A: adjacent_3p downward } 0 10 {G5R:A -> H20R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {H20R:U -> G5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {G5R:A -> H21R:A: outward } 0 13 {H21R:A -> G5R:A: outward } 0 14 {G6R:U -> H19R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {H19R:A -> G6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {H19R:A -> H20R:U: adjacent_5p upward } 0 17 {H20R:U -> H19R:A: adjacent_3p downward } 0 18 {H20R:U -> H21R:A: adjacent_5p } 0 19 {H21R:A -> H20R:U: adjacent_3p } 0 20 {H21R:A -> H22R:U: adjacent_5p upward } 0 21 {H22R:U -> H21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 G4R:U 0 1 G5R:A 0 2 G6R:U 0 3 G7R:A 0 4 H18R:U 0 5 H19R:A 0 6 H20R:U 0 7 H21R:A 0 [Edges] 0 {G4R:U -> G5R:A: adjacent_5p upward } 0 1 {G5R:A -> G4R:U: adjacent_3p downward } 0 2 {G4R:U -> H21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {H21R:A -> G4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {G5R:A -> G6R:U: adjacent_5p upward } 0 5 {G6R:U -> G5R:A: adjacent_3p downward } 0 6 {G5R:A -> H20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {H20R:U -> G5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {G5R:A -> H21R:A: outward } 0 9 {H21R:A -> G5R:A: outward } 0 10 {G6R:U -> G7R:A: adjacent_5p upward } 0 11 {G7R:A -> G6R:U: adjacent_3p downward } 0 12 {G6R:U -> H19R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {H19R:A -> G6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {G7R:A -> H18R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {H18R:U -> G7R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {G7R:A -> H19R:A: outward } 0 17 {H19R:A -> G7R:A: outward } 0 18 {H18R:U -> H19R:A: adjacent_5p upward } 0 19 {H19R:A -> H18R:U: adjacent_3p downward } 0 20 {H19R:A -> H20R:U: adjacent_5p upward } 0 21 {H20R:U -> H19R:A: adjacent_3p downward } 0 22 {H20R:U -> H21R:A: adjacent_5p } 0 23 {H21R:A -> H20R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 G5R:A 0 1 G6R:U 0 2 G7R:A 0 3 G8R:U 0 4 H17R:A 0 5 H18R:U 0 6 H19R:A 0 7 H20R:U 0 [Edges] 0 {G5R:A -> G6R:U: adjacent_5p upward } 0 1 {G6R:U -> G5R:A: adjacent_3p downward } 0 2 {G5R:A -> H20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {H20R:U -> G5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {G6R:U -> G7R:A: adjacent_5p upward } 0 5 {G7R:A -> G6R:U: adjacent_3p downward } 0 6 {G6R:U -> H19R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {H19R:A -> G6R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {G7R:A -> G8R:U: adjacent_5p upward } 0 9 {G8R:U -> G7R:A: adjacent_3p downward } 0 10 {G7R:A -> H18R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {H18R:U -> G7R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {G7R:A -> H19R:A: outward } 0 13 {H19R:A -> G7R:A: outward } 0 14 {G8R:U -> H17R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {H17R:A -> G8R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {H17R:A -> H18R:U: adjacent_5p upward } 0 17 {H18R:U -> H17R:A: adjacent_3p downward } 0 18 {H18R:U -> H19R:A: adjacent_5p upward } 0 19 {H19R:A -> H18R:U: adjacent_3p downward } 0 20 {H19R:A -> H20R:U: adjacent_5p upward } 0 21 {H20R:U -> H19R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 G6R:U 0 1 G7R:A 0 2 G8R:U 0 3 G9R:A 0 4 H16R:U 0 5 H17R:A 0 6 H18R:U 0 7 H19R:A 0 [Edges] 0 {G6R:U -> G7R:A: adjacent_5p upward } 0 1 {G7R:A -> G6R:U: adjacent_3p downward } 0 2 {G6R:U -> H19R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {H19R:A -> G6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {G7R:A -> G8R:U: adjacent_5p upward } 0 5 {G8R:U -> G7R:A: adjacent_3p downward } 0 6 {G7R:A -> H18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {H18R:U -> G7R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {G7R:A -> H19R:A: outward } 0 9 {H19R:A -> G7R:A: outward } 0 10 {G8R:U -> G9R:A: adjacent_5p upward } 0 11 {G9R:A -> G8R:U: adjacent_3p downward } 0 12 {G8R:U -> H17R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {H17R:A -> G8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {G9R:A -> H16R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {H16R:U -> G9R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {G9R:A -> H17R:A: outward } 0 17 {H17R:A -> G9R:A: outward } 0 18 {H16R:U -> H17R:A: adjacent_5p upward } 0 19 {H17R:A -> H16R:U: adjacent_3p downward } 0 20 {H17R:A -> H18R:U: adjacent_5p upward } 0 21 {H18R:U -> H17R:A: adjacent_3p downward } 0 22 {H18R:U -> H19R:A: adjacent_5p upward } 0 23 {H19R:A -> H18R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 G7R:A 0 1 G8R:U 0 2 G9R:A 0 3 G10R:U 0 4 H15R:A 0 5 H16R:U 0 6 H17R:A 0 7 H18R:U 0 [Edges] 0 {G7R:A -> G8R:U: adjacent_5p upward } 0 1 {G8R:U -> G7R:A: adjacent_3p downward } 0 2 {G7R:A -> H18R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {H18R:U -> G7R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {G8R:U -> G9R:A: adjacent_5p upward } 0 5 {G9R:A -> G8R:U: adjacent_3p downward } 0 6 {G8R:U -> H17R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {H17R:A -> G8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {G9R:A -> G10R:U: adjacent_5p upward } 0 9 {G10R:U -> G9R:A: adjacent_3p downward } 0 10 {G9R:A -> H16R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {H16R:U -> G9R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {G9R:A -> H17R:A: outward } 0 13 {H17R:A -> G9R:A: outward } 0 14 {G10R:U -> H15R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {H15R:A -> G10R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {H15R:A -> H16R:U: adjacent_5p upward } 0 17 {H16R:U -> H15R:A: adjacent_3p downward } 0 18 {H16R:U -> H17R:A: adjacent_5p upward } 0 19 {H17R:A -> H16R:U: adjacent_3p downward } 0 20 {H17R:A -> H18R:U: adjacent_5p upward } 0 21 {H18R:U -> H17R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 G8R:U 0 1 G9R:A 0 2 G10R:U 0 3 G11R:U 0 4 H14R:A 0 5 H15R:A 0 6 H16R:U 0 7 H17R:A 0 [Edges] 0 {G8R:U -> G9R:A: adjacent_5p upward } 0 1 {G9R:A -> G8R:U: adjacent_3p downward } 0 2 {G8R:U -> H17R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {H17R:A -> G8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {G9R:A -> G10R:U: adjacent_5p upward } 0 5 {G10R:U -> G9R:A: adjacent_3p downward } 0 6 {G9R:A -> H16R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {H16R:U -> G9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {G9R:A -> H17R:A: outward } 0 9 {H17R:A -> G9R:A: outward } 0 10 {G10R:U -> G11R:U: adjacent_5p upward } 0 11 {G11R:U -> G10R:U: adjacent_3p downward } 0 12 {G10R:U -> H15R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {H15R:A -> G10R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {G11R:U -> H14R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {H14R:A -> G11R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {H14R:A -> H15R:A: adjacent_5p upward } 0 17 {H15R:A -> H14R:A: adjacent_3p downward } 0 18 {H15R:A -> H16R:U: adjacent_5p upward } 0 19 {H16R:U -> H15R:A: adjacent_3p downward } 0 20 {H16R:U -> H17R:A: adjacent_5p upward } 0 21 {H17R:A -> H16R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 I2R:A 0 1 I3R:A 0 2 I4R:U 0 3 I5R:A 0 4 J20R:U 0 5 J21R:A 0 6 J22R:U 0 7 J23R:U 0 [Edges] 0 {I2R:A -> I3R:A: adjacent_5p upward } 0 1 {I3R:A -> I2R:A: adjacent_3p downward } 0 2 {I2R:A -> J23R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {J23R:U -> I2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {I3R:A -> I4R:U: adjacent_5p upward } 0 5 {I4R:U -> I3R:A: adjacent_3p downward } 0 6 {I3R:A -> J22R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {J22R:U -> I3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {I4R:U -> I5R:A: adjacent_5p upward } 0 9 {I5R:A -> I4R:U: adjacent_3p downward } 0 10 {I4R:U -> J21R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {J21R:A -> I4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {I5R:A -> J20R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {J20R:U -> I5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {I5R:A -> J21R:A: outward } 0 15 {J21R:A -> I5R:A: outward } 0 16 {J20R:U -> J21R:A: adjacent_5p } 0 17 {J21R:A -> J20R:U: adjacent_3p } 0 18 {J21R:A -> J22R:U: adjacent_5p upward } 0 19 {J22R:U -> J21R:A: adjacent_3p downward } 0 20 {J22R:U -> J23R:U: adjacent_5p upward } 0 21 {J23R:U -> J22R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 I3R:A 0 1 I4R:U 0 2 I5R:A 0 3 I6R:U 0 4 J19R:A 0 5 J20R:U 0 6 J21R:A 0 7 J22R:U 0 [Edges] 0 {I3R:A -> I4R:U: adjacent_5p upward } 0 1 {I4R:U -> I3R:A: adjacent_3p downward } 0 2 {I3R:A -> J22R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {J22R:U -> I3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {I4R:U -> I5R:A: adjacent_5p upward } 0 5 {I5R:A -> I4R:U: adjacent_3p downward } 0 6 {I4R:U -> J21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {J21R:A -> I4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {I5R:A -> I6R:U: adjacent_5p upward } 0 9 {I6R:U -> I5R:A: adjacent_3p downward } 0 10 {I5R:A -> J20R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {J20R:U -> I5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {I5R:A -> J21R:A: outward } 0 13 {J21R:A -> I5R:A: outward } 0 14 {I6R:U -> J19R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {J19R:A -> I6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {J19R:A -> J20R:U: adjacent_5p upward } 0 17 {J20R:U -> J19R:A: adjacent_3p downward } 0 18 {J20R:U -> J21R:A: adjacent_5p } 0 19 {J21R:A -> J20R:U: adjacent_3p } 0 20 {J21R:A -> J22R:U: adjacent_5p upward } 0 21 {J22R:U -> J21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 I4R:U 0 1 I5R:A 0 2 I6R:U 0 3 I7R:A 0 4 J18R:U 0 5 J19R:A 0 6 J20R:U 0 7 J21R:A 0 [Edges] 0 {I4R:U -> I5R:A: adjacent_5p upward } 0 1 {I5R:A -> I4R:U: adjacent_3p downward } 0 2 {I4R:U -> J21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {J21R:A -> I4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {I5R:A -> I6R:U: adjacent_5p upward } 0 5 {I6R:U -> I5R:A: adjacent_3p downward } 0 6 {I5R:A -> J20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {J20R:U -> I5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {I5R:A -> J21R:A: outward } 0 9 {J21R:A -> I5R:A: outward } 0 10 {I6R:U -> I7R:A: adjacent_5p } 0 11 {I7R:A -> I6R:U: adjacent_3p } 0 12 {I6R:U -> J19R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {J19R:A -> I6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {I7R:A -> J18R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {J18R:U -> I7R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {I7R:A -> J19R:A: outward } 0 17 {J19R:A -> I7R:A: outward } 0 18 {J18R:U -> J19R:A: adjacent_5p upward } 0 19 {J19R:A -> J18R:U: adjacent_3p downward } 0 20 {J19R:A -> J20R:U: adjacent_5p upward } 0 21 {J20R:U -> J19R:A: adjacent_3p downward } 0 22 {J20R:U -> J21R:A: adjacent_5p } 0 23 {J21R:A -> J20R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 I5R:A 0 1 I6R:U 0 2 I7R:A 0 3 I8R:U 0 4 J17R:A 0 5 J18R:U 0 6 J19R:A 0 7 J20R:U 0 [Edges] 0 {I5R:A -> I6R:U: adjacent_5p upward } 0 1 {I6R:U -> I5R:A: adjacent_3p downward } 0 2 {I5R:A -> J20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {J20R:U -> I5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {I6R:U -> I7R:A: adjacent_5p } 0 5 {I7R:A -> I6R:U: adjacent_3p } 0 6 {I6R:U -> J19R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {J19R:A -> I6R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {I7R:A -> I8R:U: adjacent_5p upward } 0 9 {I8R:U -> I7R:A: adjacent_3p downward } 0 10 {I7R:A -> J18R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {J18R:U -> I7R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {I7R:A -> J19R:A: outward } 0 13 {J19R:A -> I7R:A: outward } 0 14 {I8R:U -> J17R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {J17R:A -> I8R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {J17R:A -> J18R:U: adjacent_5p upward } 0 17 {J18R:U -> J17R:A: adjacent_3p downward } 0 18 {J18R:U -> J19R:A: adjacent_5p upward } 0 19 {J19R:A -> J18R:U: adjacent_3p downward } 0 20 {J19R:A -> J20R:U: adjacent_5p upward } 0 21 {J20R:U -> J19R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 I6R:U 0 1 I7R:A 0 2 I8R:U 0 3 I9R:A 0 4 J16R:U 0 5 J17R:A 0 6 J18R:U 0 7 J19R:A 0 [Edges] 0 {I6R:U -> I7R:A: adjacent_5p } 0 1 {I7R:A -> I6R:U: adjacent_3p } 0 2 {I6R:U -> J19R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {J19R:A -> I6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {I7R:A -> I8R:U: adjacent_5p upward } 0 5 {I8R:U -> I7R:A: adjacent_3p downward } 0 6 {I7R:A -> J18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {J18R:U -> I7R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {I7R:A -> J19R:A: outward } 0 9 {J19R:A -> I7R:A: outward } 0 10 {I8R:U -> I9R:A: adjacent_5p upward } 0 11 {I9R:A -> I8R:U: adjacent_3p downward } 0 12 {I8R:U -> J17R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {J17R:A -> I8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {I9R:A -> J16R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {J16R:U -> I9R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {I9R:A -> J17R:A: outward } 0 17 {J17R:A -> I9R:A: outward } 0 18 {J16R:U -> J17R:A: adjacent_5p upward } 0 19 {J17R:A -> J16R:U: adjacent_3p downward } 0 20 {J17R:A -> J18R:U: adjacent_5p upward } 0 21 {J18R:U -> J17R:A: adjacent_3p downward } 0 22 {J18R:U -> J19R:A: adjacent_5p upward } 0 23 {J19R:A -> J18R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 I7R:A 0 1 I8R:U 0 2 I9R:A 0 3 I10R:U 0 4 J15R:A 0 5 J16R:U 0 6 J17R:A 0 7 J18R:U 0 [Edges] 0 {I7R:A -> I8R:U: adjacent_5p upward } 0 1 {I8R:U -> I7R:A: adjacent_3p downward } 0 2 {I7R:A -> J18R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {J18R:U -> I7R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {I8R:U -> I9R:A: adjacent_5p upward } 0 5 {I9R:A -> I8R:U: adjacent_3p downward } 0 6 {I8R:U -> J17R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {J17R:A -> I8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {I9R:A -> I10R:U: adjacent_5p upward } 0 9 {I10R:U -> I9R:A: adjacent_3p downward } 0 10 {I9R:A -> J16R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {J16R:U -> I9R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {I9R:A -> J17R:A: outward } 0 13 {J17R:A -> I9R:A: outward } 0 14 {I10R:U -> J15R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {J15R:A -> I10R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {J15R:A -> J16R:U: adjacent_5p upward } 0 17 {J16R:U -> J15R:A: adjacent_3p downward } 0 18 {J16R:U -> J17R:A: adjacent_5p upward } 0 19 {J17R:A -> J16R:U: adjacent_3p downward } 0 20 {J17R:A -> J18R:U: adjacent_5p upward } 0 21 {J18R:U -> J17R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 I8R:U 0 1 I9R:A 0 2 I10R:U 0 3 I11R:U 0 4 J14R:A 0 5 J15R:A 0 6 J16R:U 0 7 J17R:A 0 [Edges] 0 {I8R:U -> I9R:A: adjacent_5p upward } 0 1 {I9R:A -> I8R:U: adjacent_3p downward } 0 2 {I8R:U -> J17R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {J17R:A -> I8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {I9R:A -> I10R:U: adjacent_5p upward } 0 5 {I10R:U -> I9R:A: adjacent_3p downward } 0 6 {I9R:A -> J16R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {J16R:U -> I9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {I9R:A -> J17R:A: outward } 0 9 {J17R:A -> I9R:A: outward } 0 10 {I10R:U -> I11R:U: adjacent_5p upward } 0 11 {I11R:U -> I10R:U: adjacent_3p downward } 0 12 {I10R:U -> J15R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {J15R:A -> I10R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {I11R:U -> J14R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {J14R:A -> I11R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {J14R:A -> J15R:A: adjacent_5p upward } 0 17 {J15R:A -> J14R:A: adjacent_3p downward } 0 18 {J15R:A -> J16R:U: adjacent_5p upward } 0 19 {J16R:U -> J15R:A: adjacent_3p downward } 0 20 {J16R:U -> J17R:A: adjacent_5p upward } 0 21 {J17R:A -> J16R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 K2R:A 0 1 K3R:A 0 2 K4R:U 0 3 K5R:A 0 4 L20R:U 0 5 L21R:A 0 6 L22R:U 0 7 L23R:U 0 [Edges] 0 {K2R:A -> K3R:A: adjacent_5p upward } 0 1 {K3R:A -> K2R:A: adjacent_3p downward } 0 2 {K2R:A -> L23R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {L23R:U -> K2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {K3R:A -> K4R:U: adjacent_5p upward } 0 5 {K4R:U -> K3R:A: adjacent_3p downward } 0 6 {K3R:A -> L22R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {L22R:U -> K3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {K4R:U -> K5R:A: adjacent_5p upward } 0 9 {K5R:A -> K4R:U: adjacent_3p downward } 0 10 {K4R:U -> L21R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {L21R:A -> K4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {K5R:A -> L20R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {L20R:U -> K5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {K5R:A -> L21R:A: outward } 0 15 {L21R:A -> K5R:A: outward } 0 16 {L20R:U -> L21R:A: adjacent_5p upward } 0 17 {L21R:A -> L20R:U: adjacent_3p downward } 0 18 {L21R:A -> L22R:U: adjacent_5p upward } 0 19 {L22R:U -> L21R:A: adjacent_3p downward } 0 20 {L22R:U -> L23R:U: adjacent_5p } 0 21 {L23R:U -> L22R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 K3R:A 0 1 K4R:U 0 2 K5R:A 0 3 K6R:U 0 4 L19R:A 0 5 L20R:U 0 6 L21R:A 0 7 L22R:U 0 [Edges] 0 {K3R:A -> K4R:U: adjacent_5p upward } 0 1 {K4R:U -> K3R:A: adjacent_3p downward } 0 2 {K3R:A -> L22R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {L22R:U -> K3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {K4R:U -> K5R:A: adjacent_5p upward } 0 5 {K5R:A -> K4R:U: adjacent_3p downward } 0 6 {K4R:U -> L21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {L21R:A -> K4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {K5R:A -> K6R:U: adjacent_5p upward } 0 9 {K6R:U -> K5R:A: adjacent_3p downward } 0 10 {K5R:A -> L20R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {L20R:U -> K5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {K5R:A -> L21R:A: outward } 0 13 {L21R:A -> K5R:A: outward } 0 14 {K6R:U -> L19R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {L19R:A -> K6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {L19R:A -> L20R:U: adjacent_5p upward } 0 17 {L20R:U -> L19R:A: adjacent_3p downward } 0 18 {L20R:U -> L21R:A: adjacent_5p upward } 0 19 {L21R:A -> L20R:U: adjacent_3p downward } 0 20 {L21R:A -> L22R:U: adjacent_5p upward } 0 21 {L22R:U -> L21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 K4R:U 0 1 K5R:A 0 2 K6R:U 0 3 K7R:A 0 4 L18R:U 0 5 L19R:A 0 6 L20R:U 0 7 L21R:A 0 [Edges] 0 {K4R:U -> K5R:A: adjacent_5p upward } 0 1 {K5R:A -> K4R:U: adjacent_3p downward } 0 2 {K4R:U -> L21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {L21R:A -> K4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {K5R:A -> K6R:U: adjacent_5p upward } 0 5 {K6R:U -> K5R:A: adjacent_3p downward } 0 6 {K5R:A -> L20R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {L20R:U -> K5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {K5R:A -> L21R:A: outward } 0 9 {L21R:A -> K5R:A: outward } 0 10 {K6R:U -> K7R:A: adjacent_5p } 0 11 {K7R:A -> K6R:U: adjacent_3p } 0 12 {K6R:U -> L19R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {L19R:A -> K6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {K7R:A -> L18R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {L18R:U -> K7R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {K7R:A -> L19R:A: outward } 0 17 {L19R:A -> K7R:A: outward } 0 18 {L18R:U -> L19R:A: adjacent_5p upward } 0 19 {L19R:A -> L18R:U: adjacent_3p downward } 0 20 {L19R:A -> L20R:U: adjacent_5p upward } 0 21 {L20R:U -> L19R:A: adjacent_3p downward } 0 22 {L20R:U -> L21R:A: adjacent_5p upward } 0 23 {L21R:A -> L20R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 K5R:A 0 1 K6R:U 0 2 K7R:A 0 3 K8R:U 0 4 L17R:A 0 5 L18R:U 0 6 L19R:A 0 7 L20R:U 0 [Edges] 0 {K5R:A -> K6R:U: adjacent_5p upward } 0 1 {K6R:U -> K5R:A: adjacent_3p downward } 0 2 {K5R:A -> L20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {L20R:U -> K5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {K6R:U -> K7R:A: adjacent_5p } 0 5 {K7R:A -> K6R:U: adjacent_3p } 0 6 {K6R:U -> L19R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {L19R:A -> K6R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {K7R:A -> K8R:U: adjacent_5p upward } 0 9 {K8R:U -> K7R:A: adjacent_3p downward } 0 10 {K7R:A -> L18R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {L18R:U -> K7R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {K7R:A -> L19R:A: outward } 0 13 {L19R:A -> K7R:A: outward } 0 14 {K8R:U -> L17R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {L17R:A -> K8R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {L17R:A -> L18R:U: adjacent_5p upward } 0 17 {L18R:U -> L17R:A: adjacent_3p downward } 0 18 {L18R:U -> L19R:A: adjacent_5p upward } 0 19 {L19R:A -> L18R:U: adjacent_3p downward } 0 20 {L19R:A -> L20R:U: adjacent_5p upward } 0 21 {L20R:U -> L19R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 K6R:U 0 1 K7R:A 0 2 K8R:U 0 3 K9R:A 0 4 L16R:U 0 5 L17R:A 0 6 L18R:U 0 7 L19R:A 0 [Edges] 0 {K6R:U -> K7R:A: adjacent_5p } 0 1 {K7R:A -> K6R:U: adjacent_3p } 0 2 {K6R:U -> L19R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {L19R:A -> K6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {K7R:A -> K8R:U: adjacent_5p upward } 0 5 {K8R:U -> K7R:A: adjacent_3p downward } 0 6 {K7R:A -> L18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {L18R:U -> K7R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {K7R:A -> L19R:A: outward } 0 9 {L19R:A -> K7R:A: outward } 0 10 {K8R:U -> K9R:A: adjacent_5p } 0 11 {K9R:A -> K8R:U: adjacent_3p } 0 12 {K8R:U -> L17R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {L17R:A -> K8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {K9R:A -> L16R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {L16R:U -> K9R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {K9R:A -> L17R:A: outward } 0 17 {L17R:A -> K9R:A: outward } 0 18 {L16R:U -> L17R:A: adjacent_5p upward } 0 19 {L17R:A -> L16R:U: adjacent_3p downward } 0 20 {L17R:A -> L18R:U: adjacent_5p upward } 0 21 {L18R:U -> L17R:A: adjacent_3p downward } 0 22 {L18R:U -> L19R:A: adjacent_5p upward } 0 23 {L19R:A -> L18R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 K7R:A 0 1 K8R:U 0 2 K9R:A 0 3 K10R:U 0 4 L15R:A 0 5 L16R:U 0 6 L17R:A 0 7 L18R:U 0 [Edges] 0 {K7R:A -> K8R:U: adjacent_5p upward } 0 1 {K8R:U -> K7R:A: adjacent_3p downward } 0 2 {K7R:A -> L18R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {L18R:U -> K7R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {K8R:U -> K9R:A: adjacent_5p } 0 5 {K9R:A -> K8R:U: adjacent_3p } 0 6 {K8R:U -> L17R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {L17R:A -> K8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {K9R:A -> K10R:U: adjacent_5p upward } 0 9 {K10R:U -> K9R:A: adjacent_3p downward } 0 10 {K9R:A -> L16R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {L16R:U -> K9R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {K9R:A -> L17R:A: outward } 0 13 {L17R:A -> K9R:A: outward } 0 14 {K10R:U -> L15R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {L15R:A -> K10R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {L15R:A -> L16R:U: adjacent_5p upward } 0 17 {L16R:U -> L15R:A: adjacent_3p downward } 0 18 {L16R:U -> L17R:A: adjacent_5p upward } 0 19 {L17R:A -> L16R:U: adjacent_3p downward } 0 20 {L17R:A -> L18R:U: adjacent_5p upward } 0 21 {L18R:U -> L17R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 K8R:U 0 1 K9R:A 0 2 K10R:U 0 3 K11R:U 0 4 L14R:A 0 5 L15R:A 0 6 L16R:U 0 7 L17R:A 0 [Edges] 0 {K8R:U -> K9R:A: adjacent_5p } 0 1 {K9R:A -> K8R:U: adjacent_3p } 0 2 {K8R:U -> L17R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {L17R:A -> K8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {K9R:A -> K10R:U: adjacent_5p upward } 0 5 {K10R:U -> K9R:A: adjacent_3p downward } 0 6 {K9R:A -> L16R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {L16R:U -> K9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {K9R:A -> L17R:A: outward } 0 9 {L17R:A -> K9R:A: outward } 0 10 {K10R:U -> K11R:U: adjacent_5p } 0 11 {K11R:U -> K10R:U: adjacent_3p } 0 12 {K10R:U -> L15R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {L15R:A -> K10R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {K11R:U -> L14R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {L14R:A -> K11R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {L14R:A -> L15R:A: adjacent_5p upward } 0 17 {L15R:A -> L14R:A: adjacent_3p downward } 0 18 {L15R:A -> L16R:U: adjacent_5p upward } 0 19 {L16R:U -> L15R:A: adjacent_3p downward } 0 20 {L16R:U -> L17R:A: adjacent_5p upward } 0 21 {L17R:A -> L16R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C2R:G 0 1 C3R:A 0 2 C4R:A 0 3 C5R:C 0 4 D16R:C 0 5 D17R:U 0 6 D18R:U 0 7 D19R:C 0 [Edges] 0 {C2R:G -> C3R:A: adjacent_5p upward } 0 1 {C3R:A -> C2R:G: adjacent_3p downward } 0 2 {C2R:G -> D19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D19R:C -> C2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C3R:A -> C4R:A: adjacent_5p upward } 0 5 {C4R:A -> C3R:A: adjacent_3p downward } 0 6 {C3R:A -> D18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D18R:U -> C3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C4R:A -> C5R:C: adjacent_5p upward } 0 9 {C5R:C -> C4R:A: adjacent_3p downward } 0 10 {C4R:A -> D17R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D17R:U -> C4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C5R:C -> D16R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 13 {D16R:C -> C5R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 14 {D16R:C -> D17R:U: adjacent_5p upward } 0 15 {D17R:U -> D16R:C: adjacent_3p downward } 0 16 {D17R:U -> D18R:U: adjacent_5p upward } 0 17 {D18R:U -> D17R:U: adjacent_3p downward } 0 18 {D18R:U -> D19R:C: adjacent_5p upward } 0 19 {D19R:C -> D18R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C3R:A 0 1 C4R:A 0 2 C5R:C 0 3 C6R:U 0 4 D15R:A 0 5 D16R:C 0 6 D17R:U 0 7 D18R:U 0 [Edges] 0 {C3R:A -> C4R:A: adjacent_5p upward } 0 1 {C4R:A -> C3R:A: adjacent_3p downward } 0 2 {C3R:A -> D18R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D18R:U -> C3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C4R:A -> C5R:C: adjacent_5p upward } 0 5 {C5R:C -> C4R:A: adjacent_3p downward } 0 6 {C4R:A -> D17R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D17R:U -> C4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C5R:C -> C6R:U: adjacent_5p upward } 0 9 {C6R:U -> C5R:C: adjacent_3p downward } 0 10 {C5R:C -> D16R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 11 {D16R:C -> C5R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 12 {C6R:U -> D15R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {D15R:A -> C6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {D15R:A -> D16R:C: adjacent_5p upward } 0 15 {D16R:C -> D15R:A: adjacent_3p downward } 0 16 {D16R:C -> D17R:U: adjacent_5p upward } 0 17 {D17R:U -> D16R:C: adjacent_3p downward } 0 18 {D17R:U -> D18R:U: adjacent_5p upward } 0 19 {D18R:U -> D17R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C4R:A 0 1 C5R:C 0 2 C6R:U 0 3 C7R:U 0 4 D14R:A 0 5 D15R:A 0 6 D16R:C 0 7 D17R:U 0 [Edges] 0 {C4R:A -> C5R:C: adjacent_5p upward } 0 1 {C5R:C -> C4R:A: adjacent_3p downward } 0 2 {C4R:A -> D17R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D17R:U -> C4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C5R:C -> C6R:U: adjacent_5p upward } 0 5 {C6R:U -> C5R:C: adjacent_3p downward } 0 6 {C5R:C -> D16R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 7 {D16R:C -> C5R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 8 {C6R:U -> C7R:U: adjacent_5p upward } 0 9 {C7R:U -> C6R:U: adjacent_3p downward } 0 10 {C6R:U -> D15R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D15R:A -> C6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C7R:U -> D14R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {D14R:A -> C7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {D14R:A -> D15R:A: adjacent_5p upward } 0 15 {D15R:A -> D14R:A: adjacent_3p downward } 0 16 {D15R:A -> D16R:C: adjacent_5p upward } 0 17 {D16R:C -> D15R:A: adjacent_3p downward } 0 18 {D16R:C -> D17R:U: adjacent_5p upward } 0 19 {D17R:U -> D16R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C5R:C 0 1 C6R:U 0 2 C7R:U 0 3 C8R:C 0 4 D13R:G 0 5 D14R:A 0 6 D15R:A 0 7 D16R:C 0 [Edges] 0 {C5R:C -> C6R:U: adjacent_5p upward } 0 1 {C6R:U -> C5R:C: adjacent_3p downward } 0 2 {C5R:C -> D16R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 3 {D16R:C -> C5R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 4 {C6R:U -> C7R:U: adjacent_5p upward } 0 5 {C7R:U -> C6R:U: adjacent_3p downward } 0 6 {C6R:U -> D15R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D15R:A -> C6R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C7R:U -> C8R:C: adjacent_5p upward } 0 9 {C8R:C -> C7R:U: adjacent_3p downward } 0 10 {C7R:U -> D14R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D14R:A -> C7R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C8R:C -> D13R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D13R:G -> C8R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D13R:G -> D14R:A: adjacent_5p upward } 0 15 {D14R:A -> D13R:G: adjacent_3p downward } 0 16 {D14R:A -> D15R:A: adjacent_5p upward } 0 17 {D15R:A -> D14R:A: adjacent_3p downward } 0 18 {D15R:A -> D16R:C: adjacent_5p upward } 0 19 {D16R:C -> D15R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E2R:G 0 1 E3R:A 0 2 E4R:A 0 3 E5R:C 0 4 F16R:C 0 5 F17R:U 0 6 F18R:U 0 7 F19R:C 0 [Edges] 0 {E2R:G -> E3R:A: adjacent_5p upward } 0 1 {E3R:A -> E2R:G: adjacent_3p downward } 0 2 {E2R:G -> F19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {F19R:C -> E2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E3R:A -> E4R:A: adjacent_5p upward } 0 5 {E4R:A -> E3R:A: adjacent_3p downward } 0 6 {E3R:A -> F18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {F18R:U -> E3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {E4R:A -> E5R:C: adjacent_5p upward } 0 9 {E5R:C -> E4R:A: adjacent_3p downward } 0 10 {E4R:A -> F17R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {F17R:U -> E4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {E5R:C -> F16R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 13 {F16R:C -> E5R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 14 {F16R:C -> F17R:U: adjacent_5p upward } 0 15 {F17R:U -> F16R:C: adjacent_3p downward } 0 16 {F17R:U -> F18R:U: adjacent_5p upward } 0 17 {F18R:U -> F17R:U: adjacent_3p downward } 0 18 {F18R:U -> F19R:C: adjacent_5p upward } 0 19 {F19R:C -> F18R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E3R:A 0 1 E4R:A 0 2 E5R:C 0 3 E6R:U 0 4 F15R:A 0 5 F16R:C 0 6 F17R:U 0 7 F18R:U 0 [Edges] 0 {E3R:A -> E4R:A: adjacent_5p upward } 0 1 {E4R:A -> E3R:A: adjacent_3p downward } 0 2 {E3R:A -> F18R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {F18R:U -> E3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {E4R:A -> E5R:C: adjacent_5p upward } 0 5 {E5R:C -> E4R:A: adjacent_3p downward } 0 6 {E4R:A -> F17R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {F17R:U -> E4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {E5R:C -> E6R:U: adjacent_5p upward } 0 9 {E6R:U -> E5R:C: adjacent_3p downward } 0 10 {E5R:C -> F16R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 11 {F16R:C -> E5R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 12 {E6R:U -> F15R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {F15R:A -> E6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {F15R:A -> F16R:C: adjacent_5p upward } 0 15 {F16R:C -> F15R:A: adjacent_3p downward } 0 16 {F16R:C -> F17R:U: adjacent_5p upward } 0 17 {F17R:U -> F16R:C: adjacent_3p downward } 0 18 {F17R:U -> F18R:U: adjacent_5p upward } 0 19 {F18R:U -> F17R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E4R:A 0 1 E5R:C 0 2 E6R:U 0 3 E7R:U 0 4 F14R:A 0 5 F15R:A 0 6 F16R:C 0 7 F17R:U 0 [Edges] 0 {E4R:A -> E5R:C: adjacent_5p upward } 0 1 {E5R:C -> E4R:A: adjacent_3p downward } 0 2 {E4R:A -> F17R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {F17R:U -> E4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {E5R:C -> E6R:U: adjacent_5p upward } 0 5 {E6R:U -> E5R:C: adjacent_3p downward } 0 6 {E5R:C -> F16R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 7 {F16R:C -> E5R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 8 {E6R:U -> E7R:U: adjacent_5p upward } 0 9 {E7R:U -> E6R:U: adjacent_3p downward } 0 10 {E6R:U -> F15R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {F15R:A -> E6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {E7R:U -> F14R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {F14R:A -> E7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {F14R:A -> F15R:A: adjacent_5p upward } 0 15 {F15R:A -> F14R:A: adjacent_3p downward } 0 16 {F15R:A -> F16R:C: adjacent_5p upward } 0 17 {F16R:C -> F15R:A: adjacent_3p downward } 0 18 {F16R:C -> F17R:U: adjacent_5p upward } 0 19 {F17R:U -> F16R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 E5R:C 0 1 E6R:U 0 2 E7R:U 0 3 E8R:C 0 4 F13R:G 0 5 F14R:A 0 6 F15R:A 0 7 F16R:C 0 [Edges] 0 {E5R:C -> E6R:U: adjacent_5p upward } 0 1 {E6R:U -> E5R:C: adjacent_3p downward } 0 2 {E5R:C -> F16R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 3 {F16R:C -> E5R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 4 {E6R:U -> E7R:U: adjacent_5p upward } 0 5 {E7R:U -> E6R:U: adjacent_3p downward } 0 6 {E6R:U -> F15R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {F15R:A -> E6R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {E7R:U -> E8R:C: adjacent_5p } 0 9 {E8R:C -> E7R:U: adjacent_3p } 0 10 {E7R:U -> F14R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {F14R:A -> E7R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {E8R:C -> F13R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {F13R:G -> E8R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {F13R:G -> F14R:A: adjacent_5p upward } 0 15 {F14R:A -> F13R:G: adjacent_3p downward } 0 16 {F14R:A -> F15R:A: adjacent_5p upward } 0 17 {F15R:A -> F14R:A: adjacent_3p downward } 0 18 {F15R:A -> F16R:C: adjacent_5p upward } 0 19 {F16R:C -> F15R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:A 0 3 A5R:A 0 4 A41R:U 0 5 A42R:U 0 6 A43R:C 0 7 A44R:C 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A44R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A44R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A43R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A43R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A42R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:A -> A41R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A41R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A41R:U -> A42R:U: adjacent_5p upward } 0 15 {A42R:U -> A41R:U: adjacent_3p downward } 0 16 {A42R:U -> A43R:C: adjacent_5p upward } 0 17 {A43R:C -> A42R:U: adjacent_3p downward } 0 18 {A43R:C -> A44R:C: adjacent_5p upward } 0 19 {A44R:C -> A43R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:A 0 2 A5R:A 0 3 A6R:G 0 4 A40R:C 0 5 A41R:U 0 6 A42R:U 0 7 A43R:C 0 [Edges] 0 {A3R:G -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A43R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A43R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A42R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:A -> A6R:G: adjacent_5p upward } 0 9 {A6R:G -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> A41R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A41R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A40R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A40R:C -> A41R:U: adjacent_5p upward } 0 15 {A41R:U -> A40R:C: adjacent_3p downward } 0 16 {A41R:U -> A42R:U: adjacent_5p upward } 0 17 {A42R:U -> A41R:U: adjacent_3p downward } 0 18 {A42R:U -> A43R:C: adjacent_5p upward } 0 19 {A43R:C -> A42R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:A 0 2 A6R:G 0 3 A7R:A 0 4 A39R:U 0 5 A40R:C 0 6 A41R:U 0 7 A42R:U 0 [Edges] 0 {A4R:A -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A42R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:A -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> A41R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A41R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:G -> A7R:A: adjacent_5p upward } 0 9 {A7R:A -> A6R:G: adjacent_3p downward } 0 10 {A6R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A40R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:A -> A39R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A39R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A39R:U -> A40R:C: adjacent_5p upward } 0 15 {A40R:C -> A39R:U: adjacent_3p downward } 0 16 {A40R:C -> A41R:U: adjacent_5p upward } 0 17 {A41R:U -> A40R:C: adjacent_3p downward } 0 18 {A41R:U -> A42R:U: adjacent_5p upward } 0 19 {A42R:U -> A41R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:G 0 2 A7R:A 0 3 A8R:U 0 4 A38R:A 0 5 A39R:U 0 6 A40R:C 0 7 A41R:U 0 [Edges] 0 {A5R:A -> A6R:G: adjacent_5p upward } 0 1 {A6R:G -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> A41R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A41R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:G -> A7R:A: adjacent_5p upward } 0 5 {A7R:A -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A40R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:A -> A8R:U: adjacent_5p upward } 0 9 {A8R:U -> A7R:A: adjacent_3p downward } 0 10 {A7R:A -> A39R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A39R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A8R:U -> A38R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A38R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A38R:A -> A39R:U: adjacent_5p upward } 0 15 {A39R:U -> A38R:A: adjacent_3p downward } 0 16 {A39R:U -> A40R:C: adjacent_5p upward } 0 17 {A40R:C -> A39R:U: adjacent_3p downward } 0 18 {A40R:C -> A41R:U: adjacent_5p upward } 0 19 {A41R:U -> A40R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A9R:C 0 1 A10R:U 0 2 A11R:G 0 3 A12R:G 0 4 A31R:C 0 5 A32R:C 0 6 A33R:A 0 7 A34R:G 0 [Edges] 0 {A9R:C -> A10R:U: adjacent_5p upward } 0 1 {A10R:U -> A9R:C: adjacent_3p downward } 0 2 {A9R:C -> A34R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A34R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:U -> A11R:G: adjacent_5p } 0 5 {A11R:G -> A10R:U: adjacent_3p } 0 6 {A10R:U -> A33R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A33R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:G -> A12R:G: adjacent_5p upward } 0 9 {A12R:G -> A11R:G: adjacent_3p downward } 0 10 {A11R:G -> A32R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A32R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A11R:G -> A33R:A: outward } 0 13 {A33R:A -> A11R:G: outward } 0 14 {A12R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A31R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A31R:C -> A32R:C: adjacent_5p upward } 0 17 {A32R:C -> A31R:C: adjacent_3p downward } 0 18 {A32R:C -> A33R:A: adjacent_5p upward } 0 19 {A33R:A -> A32R:C: adjacent_3p downward } 0 20 {A33R:A -> A34R:G: adjacent_5p upward } 0 21 {A34R:G -> A33R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:U 0 1 A11R:G 0 2 A12R:G 0 3 A13R:C 0 4 A30R:G 0 5 A31R:C 0 6 A32R:C 0 7 A33R:A 0 [Edges] 0 {A10R:U -> A11R:G: adjacent_5p } 0 1 {A11R:G -> A10R:U: adjacent_3p } 0 2 {A10R:U -> A33R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A33R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A11R:G -> A12R:G: adjacent_5p upward } 0 5 {A12R:G -> A11R:G: adjacent_3p downward } 0 6 {A11R:G -> A32R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A32R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:G -> A33R:A: outward } 0 9 {A33R:A -> A11R:G: outward } 0 10 {A12R:G -> A13R:C: adjacent_5p upward } 0 11 {A13R:C -> A12R:G: adjacent_3p downward } 0 12 {A12R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A31R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A13R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A30R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A30R:G -> A31R:C: adjacent_5p upward } 0 17 {A31R:C -> A30R:G: adjacent_3p downward } 0 18 {A31R:C -> A32R:C: adjacent_5p upward } 0 19 {A32R:C -> A31R:C: adjacent_3p downward } 0 20 {A32R:C -> A33R:A: adjacent_5p upward } 0 21 {A33R:A -> A32R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A11R:G 0 1 A12R:G 0 2 A13R:C 0 3 A14R:C 0 4 A29R:G 0 5 A30R:G 0 6 A31R:C 0 7 A32R:C 0 [Edges] 0 {A11R:G -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:G: adjacent_3p downward } 0 2 {A11R:G -> A32R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A32R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:G -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A31R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:C -> A14R:C: adjacent_5p upward } 0 9 {A14R:C -> A13R:C: adjacent_3p downward } 0 10 {A13R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A30R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A29R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A29R:G -> A30R:G: adjacent_5p upward } 0 15 {A30R:G -> A29R:G: adjacent_3p downward } 0 16 {A30R:G -> A31R:C: adjacent_5p upward } 0 17 {A31R:C -> A30R:G: adjacent_3p downward } 0 18 {A31R:C -> A32R:C: adjacent_5p upward } 0 19 {A32R:C -> A31R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:C 0 2 A14R:C 0 3 A15R:U 0 4 A28R:A 0 5 A29R:G 0 6 A30R:G 0 7 A31R:C 0 [Edges] 0 {A12R:G -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A31R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:C -> A14R:C: adjacent_5p upward } 0 5 {A14R:C -> A13R:C: adjacent_3p downward } 0 6 {A13R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A30R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:C -> A15R:U: adjacent_5p } 0 9 {A15R:U -> A14R:C: adjacent_3p } 0 10 {A14R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A29R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A15R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A28R:A -> A15R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A28R:A -> A29R:G: adjacent_5p upward } 0 15 {A29R:G -> A28R:A: adjacent_3p downward } 0 16 {A29R:G -> A30R:G: adjacent_5p upward } 0 17 {A30R:G -> A29R:G: adjacent_3p downward } 0 18 {A30R:G -> A31R:C: adjacent_5p upward } 0 19 {A31R:C -> A30R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A13R:C 0 1 A14R:C 0 2 A15R:U 0 3 A16R:U 0 4 A27R:A 0 5 A28R:A 0 6 A29R:G 0 7 A30R:G 0 [Edges] 0 {A13R:C -> A14R:C: adjacent_5p upward } 0 1 {A14R:C -> A13R:C: adjacent_3p downward } 0 2 {A13R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A30R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A14R:C -> A15R:U: adjacent_5p } 0 5 {A15R:U -> A14R:C: adjacent_3p } 0 6 {A14R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A29R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A15R:U -> A16R:U: adjacent_5p upward } 0 9 {A16R:U -> A15R:U: adjacent_3p downward } 0 10 {A15R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A28R:A -> A15R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A16R:U -> A27R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A27R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A27R:A -> A28R:A: adjacent_5p upward } 0 15 {A28R:A -> A27R:A: adjacent_3p downward } 0 16 {A28R:A -> A29R:G: adjacent_5p upward } 0 17 {A29R:G -> A28R:A: adjacent_3p downward } 0 18 {A29R:G -> A30R:G: adjacent_5p upward } 0 19 {A30R:G -> A29R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A14R:C 0 1 A15R:U 0 2 A16R:U 0 3 A17R:C 0 4 A26R:G 0 5 A27R:A 0 6 A28R:A 0 7 A29R:G 0 [Edges] 0 {A14R:C -> A15R:U: adjacent_5p } 0 1 {A15R:U -> A14R:C: adjacent_3p } 0 2 {A14R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A29R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A15R:U -> A16R:U: adjacent_5p upward } 0 5 {A16R:U -> A15R:U: adjacent_3p downward } 0 6 {A15R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A28R:A -> A15R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A16R:U -> A17R:C: adjacent_5p upward } 0 9 {A17R:C -> A16R:U: adjacent_3p downward } 0 10 {A16R:U -> A27R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A27R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A17R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A26R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A26R:G -> A27R:A: adjacent_5p upward } 0 15 {A27R:A -> A26R:G: adjacent_3p downward } 0 16 {A27R:A -> A28R:A: adjacent_5p upward } 0 17 {A28R:A -> A27R:A: adjacent_3p downward } 0 18 {A28R:A -> A29R:G: adjacent_5p upward } 0 19 {A29R:G -> A28R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A15R:U 0 1 A16R:U 0 2 A17R:C 0 3 A18R:C 0 4 A25R:G 0 5 A26R:G 0 6 A27R:A 0 7 A28R:A 0 [Edges] 0 {A15R:U -> A16R:U: adjacent_5p upward } 0 1 {A16R:U -> A15R:U: adjacent_3p downward } 0 2 {A15R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A28R:A -> A15R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A16R:U -> A17R:C: adjacent_5p upward } 0 5 {A17R:C -> A16R:U: adjacent_3p downward } 0 6 {A16R:U -> A27R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A27R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A17R:C -> A18R:C: adjacent_5p upward } 0 9 {A18R:C -> A17R:C: adjacent_3p downward } 0 10 {A17R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A26R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A18R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A25R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A25R:G -> A26R:G: adjacent_5p upward } 0 15 {A26R:G -> A25R:G: adjacent_3p downward } 0 16 {A26R:G -> A27R:A: adjacent_5p upward } 0 17 {A27R:A -> A26R:G: adjacent_3p downward } 0 18 {A27R:A -> A28R:A: adjacent_5p upward } 0 19 {A28R:A -> A27R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A16R:U 0 1 A17R:C 0 2 A18R:C 0 3 A19R:C 0 4 A24R:G 0 5 A25R:G 0 6 A26R:G 0 7 A27R:A 0 [Edges] 0 {A16R:U -> A17R:C: adjacent_5p upward } 0 1 {A17R:C -> A16R:U: adjacent_3p downward } 0 2 {A16R:U -> A27R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A27R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A17R:C -> A18R:C: adjacent_5p upward } 0 5 {A18R:C -> A17R:C: adjacent_3p downward } 0 6 {A17R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A26R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A18R:C -> A19R:C: adjacent_5p upward } 0 9 {A19R:C -> A18R:C: adjacent_3p downward } 0 10 {A18R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A25R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A19R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A24R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A24R:G -> A25R:G: adjacent_5p upward } 0 15 {A25R:G -> A24R:G: adjacent_3p downward } 0 16 {A25R:G -> A26R:G: adjacent_5p upward } 0 17 {A26R:G -> A25R:G: adjacent_3p downward } 0 18 {A26R:G -> A27R:A: adjacent_5p upward } 0 19 {A27R:A -> A26R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A17R:C 0 1 A18R:C 0 2 A19R:C 0 3 A20R:A 0 4 A23R:A 0 5 A24R:G 0 6 A25R:G 0 7 A26R:G 0 [Edges] 0 {A17R:C -> A18R:C: adjacent_5p upward } 0 1 {A18R:C -> A17R:C: adjacent_3p downward } 0 2 {A17R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A26R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A18R:C -> A19R:C: adjacent_5p upward } 0 5 {A19R:C -> A18R:C: adjacent_3p downward } 0 6 {A18R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A25R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A19R:C -> A20R:A: adjacent_5p upward } 0 9 {A20R:A -> A19R:C: adjacent_3p downward } 0 10 {A19R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A24R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A20R:A -> A23R:A: pairing antiparallel trans 41 Ss/Hh } 0 13 {A23R:A -> A20R:A: pairing antiparallel trans 41 Hh/Ss } 0 14 {A23R:A -> A24R:G: adjacent_5p upward } 0 15 {A24R:G -> A23R:A: adjacent_3p downward } 0 16 {A24R:G -> A25R:G: adjacent_5p upward } 0 17 {A25R:G -> A24R:G: adjacent_3p downward } 0 18 {A25R:G -> A26R:G: adjacent_5p upward } 0 19 {A26R:G -> A25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:U 0 4 A14R:A 0 5 A15R:C 0 6 A16R:G 0 7 A17R:U 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A17R:U -> A2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A16R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A15R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A16R:G: outward } 0 13 {A16R:G -> A4R:G: outward } 0 14 {A5R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A14R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A14R:A -> A15R:C: adjacent_5p upward } 0 17 {A15R:C -> A14R:A: adjacent_3p downward } 0 18 {A15R:C -> A16R:G: adjacent_5p upward } 0 19 {A16R:G -> A15R:C: adjacent_3p downward } 0 20 {A16R:G -> A17R:U: adjacent_5p upward } 0 21 {A17R:U -> A16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:U 0 3 A6R:U 0 4 A13R:A 0 5 A14R:A 0 6 A15R:C 0 7 A16R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A16R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A15R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A16R:G: outward } 0 9 {A16R:G -> A4R:G: outward } 0 10 {A5R:U -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:U: adjacent_3p downward } 0 12 {A5R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A14R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A6R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A13R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A13R:A -> A14R:A: adjacent_5p upward } 0 17 {A14R:A -> A13R:A: adjacent_3p downward } 0 18 {A14R:A -> A15R:C: adjacent_5p upward } 0 19 {A15R:C -> A14R:A: adjacent_3p downward } 0 20 {A15R:C -> A16R:G: adjacent_5p upward } 0 21 {A16R:G -> A15R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:U 0 2 A6R:U 0 3 A7R:C 0 4 A12R:G 0 5 A13R:A 0 6 A14R:A 0 7 A15R:C 0 [Edges] 0 {A4R:G -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A15R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A14R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:U -> A7R:C: adjacent_5p upward } 0 9 {A7R:C -> A6R:U: adjacent_3p downward } 0 10 {A6R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A13R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A12R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A12R:G -> A13R:A: adjacent_5p upward } 0 15 {A13R:A -> A12R:G: adjacent_3p downward } 0 16 {A13R:A -> A14R:A: adjacent_5p upward } 0 17 {A14R:A -> A13R:A: adjacent_3p downward } 0 18 {A14R:A -> A15R:C: adjacent_5p upward } 0 19 {A15R:C -> A14R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A257R:G 0 1 A258R:A 0 2 A259R:G 0 3 A260R:G 0 4 A296R:C 0 5 A297R:C 0 6 A298R:U 0 7 A299R:C 0 [Edges] 0 {A257R:G -> A258R:A: adjacent_5p upward } 0 1 {A258R:A -> A257R:G: adjacent_3p downward } 0 2 {A257R:G -> A299R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A299R:C -> A257R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A258R:A -> A259R:G: adjacent_5p upward } 0 5 {A259R:G -> A258R:A: adjacent_3p downward } 0 6 {A258R:A -> A298R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A298R:U -> A258R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A259R:G -> A260R:G: adjacent_5p upward } 0 9 {A260R:G -> A259R:G: adjacent_3p downward } 0 10 {A259R:G -> A297R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A297R:C -> A259R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A260R:G -> A296R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A296R:C -> A260R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A296R:C -> A297R:C: adjacent_5p upward } 0 15 {A297R:C -> A296R:C: adjacent_3p downward } 0 16 {A297R:C -> A298R:U: adjacent_5p upward } 0 17 {A298R:U -> A297R:C: adjacent_3p downward } 0 18 {A298R:U -> A299R:C: adjacent_5p } 0 19 {A299R:C -> A298R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A258R:A 0 1 A259R:G 0 2 A260R:G 0 3 A261R:U 0 4 A295R:A 0 5 A296R:C 0 6 A297R:C 0 7 A298R:U 0 [Edges] 0 {A258R:A -> A259R:G: adjacent_5p upward } 0 1 {A259R:G -> A258R:A: adjacent_3p downward } 0 2 {A258R:A -> A298R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A298R:U -> A258R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A259R:G -> A260R:G: adjacent_5p upward } 0 5 {A260R:G -> A259R:G: adjacent_3p downward } 0 6 {A259R:G -> A297R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A297R:C -> A259R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A260R:G -> A261R:U: adjacent_5p upward } 0 9 {A261R:U -> A260R:G: adjacent_3p downward } 0 10 {A260R:G -> A296R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A296R:C -> A260R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A261R:U -> A295R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A295R:A -> A261R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A295R:A -> A296R:C: adjacent_5p upward } 0 15 {A296R:C -> A295R:A: adjacent_3p downward } 0 16 {A296R:C -> A297R:C: adjacent_5p upward } 0 17 {A297R:C -> A296R:C: adjacent_3p downward } 0 18 {A297R:C -> A298R:U: adjacent_5p upward } 0 19 {A298R:U -> A297R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A268R:G 0 1 A269R:A 0 2 A270R:C 0 3 A271R:U 0 4 A285R:G 0 5 A286R:G 0 6 A287R:U 0 7 A288R:C 0 [Edges] 0 {A268R:G -> A269R:A: adjacent_5p upward } 0 1 {A269R:A -> A268R:G: adjacent_3p downward } 0 2 {A268R:G -> A288R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A288R:C -> A268R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A269R:A -> A270R:C: adjacent_5p upward } 0 5 {A270R:C -> A269R:A: adjacent_3p downward } 0 6 {A269R:A -> A287R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A287R:U -> A269R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A270R:C -> A271R:U: adjacent_5p } 0 9 {A271R:U -> A270R:C: adjacent_3p } 0 10 {A270R:C -> A286R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A286R:G -> A270R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A271R:U -> A285R:G: pairing parallel trans one_hbond Ws/Ww } 0 13 {A285R:G -> A271R:U: pairing parallel trans one_hbond Ww/Ws } 0 14 {A285R:G -> A286R:G: adjacent_5p } 0 15 {A286R:G -> A285R:G: adjacent_3p } 0 16 {A286R:G -> A287R:U: adjacent_5p upward } 0 17 {A287R:U -> A286R:G: adjacent_3p downward } 0 18 {A287R:U -> A288R:C: adjacent_5p upward } 0 19 {A288R:C -> A287R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A141R:C 0 1 A142R:G 0 2 A143R:G 0 3 A144R:C 0 4 A234R:G 0 5 A235R:U 0 6 A236R:C 0 7 A237R:G 0 [Edges] 0 {A141R:C -> A142R:G: adjacent_5p upward } 0 1 {A142R:G -> A141R:C: adjacent_3p downward } 0 2 {A141R:C -> A237R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A237R:G -> A141R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A142R:G -> A143R:G: adjacent_5p upward } 0 5 {A143R:G -> A142R:G: adjacent_3p downward } 0 6 {A142R:G -> A236R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A236R:C -> A142R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A142R:G -> A237R:G: outward } 0 9 {A237R:G -> A142R:G: outward } 0 10 {A143R:G -> A144R:C: adjacent_5p upward } 0 11 {A144R:C -> A143R:G: adjacent_3p downward } 0 12 {A144R:C -> A234R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A234R:G -> A144R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A234R:G -> A235R:U: adjacent_5p upward } 0 15 {A235R:U -> A234R:G: adjacent_3p downward } 0 16 {A235R:U -> A236R:C: adjacent_5p } 0 17 {A236R:C -> A235R:U: adjacent_3p } 0 18 {A236R:C -> A237R:G: adjacent_5p upward } 0 19 {A237R:G -> A236R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 9 . . . . 19 . [GraphModel] [Vertices] 0 A142R:G 0 1 A143R:G 0 2 A144R:C 0 3 A145R:G 0 4 A233R:C 0 5 A234R:G 0 6 A235R:U 0 7 A236R:C 0 [Edges] 0 {A142R:G -> A143R:G: adjacent_5p upward } 0 1 {A143R:G -> A142R:G: adjacent_3p downward } 0 2 {A142R:G -> A236R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A236R:C -> A142R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A143R:G -> A144R:C: adjacent_5p upward } 0 5 {A144R:C -> A143R:G: adjacent_3p downward } 0 6 {A144R:C -> A145R:G: adjacent_5p upward } 0 7 {A145R:G -> A144R:C: adjacent_3p downward } 0 8 {A144R:C -> A234R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A234R:G -> A144R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A145R:G -> A233R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A233R:C -> A145R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A145R:G -> A234R:G: outward } 0 13 {A234R:G -> A145R:G: outward } 0 14 {A233R:C -> A234R:G: adjacent_5p upward } 0 15 {A234R:G -> A233R:C: adjacent_3p downward } 0 16 {A234R:G -> A235R:U: adjacent_5p upward } 0 17 {A235R:U -> A234R:G: adjacent_3p downward } 0 18 {A235R:U -> A236R:C: adjacent_5p } 0 19 {A236R:C -> A235R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 12 . . 4 . . . 11 . 14 . . 5 . . 9 13 15 . 16 . 6 . . . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A145R:G 0 1 A146R:G 0 2 A147R:U 0 3 A148R:G 0 4 A182R:C 0 5 A183R:U 0 6 A184R:U 0 7 A185R:U 0 [Edges] 0 {A145R:G -> A146R:G: adjacent_5p upward } 0 1 {A146R:G -> A145R:G: adjacent_3p downward } 0 2 {A145R:G -> A185R:U: pairing parallel trans one_hbond Sw/Ws } 0 3 {A185R:U -> A145R:G: pairing parallel trans one_hbond Ws/Sw } 0 4 {A146R:G -> A147R:U: adjacent_5p } 0 5 {A147R:U -> A146R:G: adjacent_3p } 0 6 {A147R:U -> A148R:G: adjacent_5p upward } 0 7 {A148R:G -> A147R:U: adjacent_3p downward } 0 8 {A147R:U -> A183R:U: pairing antiparallel cis XVI Ww/Ws } 0 9 {A183R:U -> A147R:U: pairing antiparallel cis XVI Ws/Ww } 0 10 {A148R:G -> A182R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A182R:C -> A148R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A182R:C -> A183R:U: adjacent_5p upward } 0 13 {A183R:U -> A182R:C: adjacent_3p downward } 0 14 {A183R:U -> A184R:U: adjacent_5p } 0 15 {A184R:U -> A183R:U: adjacent_3p } 0 16 {A184R:U -> A185R:U: adjacent_5p } 0 17 {A185R:U -> A184R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A147R:U 0 1 A148R:G 0 2 A149R:G 0 3 A150R:G 0 4 A180R:C 0 5 A181R:C 0 6 A182R:C 0 7 A183R:U 0 [Edges] 0 {A147R:U -> A148R:G: adjacent_5p upward } 0 1 {A148R:G -> A147R:U: adjacent_3p downward } 0 2 {A147R:U -> A183R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {A183R:U -> A147R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {A148R:G -> A149R:G: adjacent_5p upward } 0 5 {A149R:G -> A148R:G: adjacent_3p downward } 0 6 {A148R:G -> A182R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A182R:C -> A148R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A149R:G -> A150R:G: adjacent_5p upward } 0 9 {A150R:G -> A149R:G: adjacent_3p downward } 0 10 {A149R:G -> A181R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A181R:C -> A149R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A150R:G -> A180R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A180R:C -> A150R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A150R:G -> A181R:C: outward } 0 15 {A181R:C -> A150R:G: outward } 0 16 {A180R:C -> A181R:C: adjacent_5p } 0 17 {A181R:C -> A180R:C: adjacent_3p } 0 18 {A181R:C -> A182R:C: adjacent_5p upward } 0 19 {A182R:C -> A181R:C: adjacent_3p downward } 0 20 {A182R:C -> A183R:U: adjacent_5p upward } 0 21 {A183R:U -> A182R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A148R:G 0 1 A149R:G 0 2 A150R:G 0 3 A151R:G 0 4 A179R:C 0 5 A180R:C 0 6 A181R:C 0 7 A182R:C 0 [Edges] 0 {A148R:G -> A149R:G: adjacent_5p upward } 0 1 {A149R:G -> A148R:G: adjacent_3p downward } 0 2 {A148R:G -> A182R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A182R:C -> A148R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A149R:G -> A150R:G: adjacent_5p upward } 0 5 {A150R:G -> A149R:G: adjacent_3p downward } 0 6 {A149R:G -> A181R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A181R:C -> A149R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A150R:G -> A151R:G: adjacent_5p upward } 0 9 {A151R:G -> A150R:G: adjacent_3p downward } 0 10 {A150R:G -> A180R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A180R:C -> A150R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A150R:G -> A181R:C: outward } 0 13 {A181R:C -> A150R:G: outward } 0 14 {A151R:G -> A179R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 15 {A179R:C -> A151R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 16 {A179R:C -> A180R:C: adjacent_5p upward } 0 17 {A180R:C -> A179R:C: adjacent_3p downward } 0 18 {A180R:C -> A181R:C: adjacent_5p } 0 19 {A181R:C -> A180R:C: adjacent_3p } 0 20 {A181R:C -> A182R:C: adjacent_5p upward } 0 21 {A182R:C -> A181R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A149R:G 0 1 A150R:G 0 2 A151R:G 0 3 A152R:G 0 4 A178R:C 0 5 A179R:C 0 6 A180R:C 0 7 A181R:C 0 [Edges] 0 {A149R:G -> A150R:G: adjacent_5p upward } 0 1 {A150R:G -> A149R:G: adjacent_3p downward } 0 2 {A149R:G -> A181R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A181R:C -> A149R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A150R:G -> A151R:G: adjacent_5p upward } 0 5 {A151R:G -> A150R:G: adjacent_3p downward } 0 6 {A150R:G -> A180R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A180R:C -> A150R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A150R:G -> A181R:C: outward } 0 9 {A181R:C -> A150R:G: outward } 0 10 {A151R:G -> A152R:G: adjacent_5p upward } 0 11 {A152R:G -> A151R:G: adjacent_3p downward } 0 12 {A151R:G -> A179R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {A179R:C -> A151R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {A152R:G -> A178R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A178R:C -> A152R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A178R:C -> A179R:C: adjacent_5p } 0 17 {A179R:C -> A178R:C: adjacent_3p } 0 18 {A179R:C -> A180R:C: adjacent_5p upward } 0 19 {A180R:C -> A179R:C: adjacent_3p downward } 0 20 {A180R:C -> A181R:C: adjacent_5p } 0 21 {A181R:C -> A180R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A155R:C 0 1 A156R:A 0 2 A157R:U 0 3 A158R:C 0 4 A171R:G 0 5 A172R:A 0 6 A173R:U 0 7 A174R:G 0 [Edges] 0 {A155R:C -> A156R:A: adjacent_5p upward } 0 1 {A156R:A -> A155R:C: adjacent_3p downward } 0 2 {A155R:C -> A174R:G: pairing antiparallel cis Ww/Ww } 0 3 {A174R:G -> A155R:C: pairing antiparallel cis Ww/Ww } 0 4 {A156R:A -> A157R:U: adjacent_5p upward } 0 5 {A157R:U -> A156R:A: adjacent_3p downward } 0 6 {A156R:A -> A173R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A173R:U -> A156R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A157R:U -> A158R:C: adjacent_5p upward } 0 9 {A158R:C -> A157R:U: adjacent_3p downward } 0 10 {A157R:U -> A172R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A172R:A -> A157R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A158R:C -> A171R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A171R:G -> A158R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A171R:G -> A172R:A: adjacent_5p upward } 0 15 {A172R:A -> A171R:G: adjacent_3p downward } 0 16 {A172R:A -> A173R:U: adjacent_5p upward } 0 17 {A173R:U -> A172R:A: adjacent_3p downward } 0 18 {A173R:U -> A174R:G: adjacent_5p upward } 0 19 {A174R:G -> A173R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A156R:A 0 1 A157R:U 0 2 A158R:C 0 3 A159R:U 0 4 A170R:A 0 5 A171R:G 0 6 A172R:A 0 7 A173R:U 0 [Edges] 0 {A156R:A -> A157R:U: adjacent_5p upward } 0 1 {A157R:U -> A156R:A: adjacent_3p downward } 0 2 {A156R:A -> A173R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A173R:U -> A156R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A157R:U -> A158R:C: adjacent_5p upward } 0 5 {A158R:C -> A157R:U: adjacent_3p downward } 0 6 {A157R:U -> A172R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A172R:A -> A157R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A158R:C -> A159R:U: adjacent_5p } 0 9 {A159R:U -> A158R:C: adjacent_3p } 0 10 {A158R:C -> A171R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A171R:G -> A158R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A159R:U -> A170R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A170R:A -> A159R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A159R:U -> A171R:G: outward } 0 15 {A171R:G -> A159R:U: outward } 0 16 {A170R:A -> A171R:G: adjacent_5p upward } 0 17 {A171R:G -> A170R:A: adjacent_3p downward } 0 18 {A171R:G -> A172R:A: adjacent_5p upward } 0 19 {A172R:A -> A171R:G: adjacent_3p downward } 0 20 {A172R:A -> A173R:U: adjacent_5p upward } 0 21 {A173R:U -> A172R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A157R:U 0 1 A158R:C 0 2 A159R:U 0 3 A160R:C 0 4 A169R:G 0 5 A170R:A 0 6 A171R:G 0 7 A172R:A 0 [Edges] 0 {A157R:U -> A158R:C: adjacent_5p upward } 0 1 {A158R:C -> A157R:U: adjacent_3p downward } 0 2 {A157R:U -> A172R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A172R:A -> A157R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A158R:C -> A159R:U: adjacent_5p } 0 5 {A159R:U -> A158R:C: adjacent_3p } 0 6 {A158R:C -> A171R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A171R:G -> A158R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A159R:U -> A160R:C: adjacent_5p upward } 0 9 {A160R:C -> A159R:U: adjacent_3p downward } 0 10 {A159R:U -> A170R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A170R:A -> A159R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A159R:U -> A171R:G: outward } 0 13 {A171R:G -> A159R:U: outward } 0 14 {A160R:C -> A169R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 15 {A169R:G -> A160R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 16 {A169R:G -> A170R:A: adjacent_5p upward } 0 17 {A170R:A -> A169R:G: adjacent_3p downward } 0 18 {A170R:A -> A171R:G: adjacent_5p upward } 0 19 {A171R:G -> A170R:A: adjacent_3p downward } 0 20 {A171R:G -> A172R:A: adjacent_5p upward } 0 21 {A172R:A -> A171R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A158R:C 0 1 A159R:U 0 2 A160R:C 0 3 A161R:C 0 4 A168R:G 0 5 A169R:G 0 6 A170R:A 0 7 A171R:G 0 [Edges] 0 {A158R:C -> A159R:U: adjacent_5p } 0 1 {A159R:U -> A158R:C: adjacent_3p } 0 2 {A158R:C -> A171R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A171R:G -> A158R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A159R:U -> A160R:C: adjacent_5p upward } 0 5 {A160R:C -> A159R:U: adjacent_3p downward } 0 6 {A159R:U -> A170R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A170R:A -> A159R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A159R:U -> A171R:G: outward } 0 9 {A171R:G -> A159R:U: outward } 0 10 {A160R:C -> A161R:C: adjacent_5p upward } 0 11 {A161R:C -> A160R:C: adjacent_3p downward } 0 12 {A160R:C -> A169R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 13 {A169R:G -> A160R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 14 {A161R:C -> A168R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A168R:G -> A161R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A168R:G -> A169R:G: adjacent_5p upward } 0 17 {A169R:G -> A168R:G: adjacent_3p downward } 0 18 {A169R:G -> A170R:A: adjacent_5p upward } 0 19 {A170R:A -> A169R:G: adjacent_3p downward } 0 20 {A170R:A -> A171R:G: adjacent_5p upward } 0 21 {A171R:G -> A170R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A159R:U 0 1 A160R:C 0 2 A161R:C 0 3 A162R:U 0 4 A167R:G 0 5 A168R:G 0 6 A169R:G 0 7 A170R:A 0 [Edges] 0 {A159R:U -> A160R:C: adjacent_5p upward } 0 1 {A160R:C -> A159R:U: adjacent_3p downward } 0 2 {A159R:U -> A170R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A170R:A -> A159R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A160R:C -> A161R:C: adjacent_5p upward } 0 5 {A161R:C -> A160R:C: adjacent_3p downward } 0 6 {A160R:C -> A169R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {A169R:G -> A160R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {A161R:C -> A162R:U: adjacent_5p } 0 9 {A162R:U -> A161R:C: adjacent_3p } 0 10 {A161R:C -> A168R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A168R:G -> A161R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A162R:U -> A167R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A167R:G -> A162R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A167R:G -> A168R:G: adjacent_5p upward } 0 15 {A168R:G -> A167R:G: adjacent_3p downward } 0 16 {A168R:G -> A169R:G: adjacent_5p upward } 0 17 {A169R:G -> A168R:G: adjacent_3p downward } 0 18 {A169R:G -> A170R:A: adjacent_5p upward } 0 19 {A170R:A -> A169R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A187R:C 0 1 A188R:C 0 2 A189R:U 0 3 A190R:G 0 4 A228R:C 0 5 A229R:A 0 6 A230R:G 0 7 A231R:G 0 [Edges] 0 {A187R:C -> A188R:C: adjacent_5p } 0 1 {A188R:C -> A187R:C: adjacent_3p } 0 2 {A187R:C -> A231R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A231R:G -> A187R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A188R:C -> A189R:U: adjacent_5p upward } 0 5 {A189R:U -> A188R:C: adjacent_3p downward } 0 6 {A188R:C -> A230R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A230R:G -> A188R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A189R:U -> A190R:G: adjacent_5p upward } 0 9 {A190R:G -> A189R:U: adjacent_3p downward } 0 10 {A189R:U -> A229R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A229R:A -> A189R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A190R:G -> A228R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A228R:C -> A190R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A190R:G -> A229R:A: outward } 0 15 {A229R:A -> A190R:G: outward } 0 16 {A228R:C -> A229R:A: adjacent_5p upward } 0 17 {A229R:A -> A228R:C: adjacent_3p downward } 0 18 {A229R:A -> A230R:G: adjacent_5p upward } 0 19 {A230R:G -> A229R:A: adjacent_3p downward } 0 20 {A230R:G -> A231R:G: adjacent_5p upward } 0 21 {A231R:G -> A230R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A188R:C 0 1 A189R:U 0 2 A190R:G 0 3 A191R:C 0 4 A227R:G 0 5 A228R:C 0 6 A229R:A 0 7 A230R:G 0 [Edges] 0 {A188R:C -> A189R:U: adjacent_5p upward } 0 1 {A189R:U -> A188R:C: adjacent_3p downward } 0 2 {A188R:C -> A230R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A230R:G -> A188R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A189R:U -> A190R:G: adjacent_5p upward } 0 5 {A190R:G -> A189R:U: adjacent_3p downward } 0 6 {A189R:U -> A229R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A229R:A -> A189R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A190R:G -> A191R:C: adjacent_5p upward } 0 9 {A191R:C -> A190R:G: adjacent_3p downward } 0 10 {A190R:G -> A228R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A228R:C -> A190R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A190R:G -> A229R:A: outward } 0 13 {A229R:A -> A190R:G: outward } 0 14 {A191R:C -> A227R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A227R:G -> A191R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A227R:G -> A228R:C: adjacent_5p upward } 0 17 {A228R:C -> A227R:G: adjacent_3p downward } 0 18 {A228R:C -> A229R:A: adjacent_5p upward } 0 19 {A229R:A -> A228R:C: adjacent_3p downward } 0 20 {A229R:A -> A230R:G: adjacent_5p upward } 0 21 {A230R:G -> A229R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A189R:U 0 1 A190R:G 0 2 A191R:C 0 3 A192R:C 0 4 A226R:G 0 5 A227R:G 0 6 A228R:C 0 7 A229R:A 0 [Edges] 0 {A189R:U -> A190R:G: adjacent_5p upward } 0 1 {A190R:G -> A189R:U: adjacent_3p downward } 0 2 {A189R:U -> A229R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A229R:A -> A189R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A190R:G -> A191R:C: adjacent_5p upward } 0 5 {A191R:C -> A190R:G: adjacent_3p downward } 0 6 {A190R:G -> A228R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A228R:C -> A190R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A190R:G -> A229R:A: outward } 0 9 {A229R:A -> A190R:G: outward } 0 10 {A191R:C -> A192R:C: adjacent_5p } 0 11 {A192R:C -> A191R:C: adjacent_3p } 0 12 {A191R:C -> A227R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A227R:G -> A191R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A192R:C -> A226R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A226R:G -> A192R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A192R:C -> A227R:G: outward } 0 17 {A227R:G -> A192R:C: outward } 0 18 {A226R:G -> A227R:G: adjacent_5p upward } 0 19 {A227R:G -> A226R:G: adjacent_3p downward } 0 20 {A227R:G -> A228R:C: adjacent_5p upward } 0 21 {A228R:C -> A227R:G: adjacent_3p downward } 0 22 {A228R:C -> A229R:A: adjacent_5p upward } 0 23 {A229R:A -> A228R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A190R:G 0 1 A191R:C 0 2 A192R:C 0 3 A193R:G 0 4 A225R:A 0 5 A226R:G 0 6 A227R:G 0 7 A228R:C 0 [Edges] 0 {A190R:G -> A191R:C: adjacent_5p upward } 0 1 {A191R:C -> A190R:G: adjacent_3p downward } 0 2 {A190R:G -> A228R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A228R:C -> A190R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A191R:C -> A192R:C: adjacent_5p } 0 5 {A192R:C -> A191R:C: adjacent_3p } 0 6 {A191R:C -> A227R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A227R:G -> A191R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A192R:C -> A193R:G: adjacent_5p upward } 0 9 {A193R:G -> A192R:C: adjacent_3p downward } 0 10 {A192R:C -> A226R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A226R:G -> A192R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A192R:C -> A227R:G: outward } 0 13 {A227R:G -> A192R:C: outward } 0 14 {A193R:G -> A225R:A: pairing antiparallel trans 54 Ss/Hh } 0 15 {A225R:A -> A193R:G: pairing antiparallel trans 54 Hh/Ss } 0 16 {A225R:A -> A226R:G: adjacent_5p upward } 0 17 {A226R:G -> A225R:A: adjacent_3p downward } 0 18 {A226R:G -> A227R:G: adjacent_5p upward } 0 19 {A227R:G -> A226R:G: adjacent_3p downward } 0 20 {A227R:G -> A228R:C: adjacent_5p upward } 0 21 {A228R:C -> A227R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A191R:C 0 1 A192R:C 0 2 A193R:G 0 3 A194R:A 0 4 A224R:U 0 5 A225R:A 0 6 A226R:G 0 7 A227R:G 0 [Edges] 0 {A191R:C -> A192R:C: adjacent_5p } 0 1 {A192R:C -> A191R:C: adjacent_3p } 0 2 {A191R:C -> A227R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A227R:G -> A191R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A192R:C -> A193R:G: adjacent_5p upward } 0 5 {A193R:G -> A192R:C: adjacent_3p downward } 0 6 {A192R:C -> A226R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A226R:G -> A192R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A192R:C -> A227R:G: outward } 0 9 {A227R:G -> A192R:C: outward } 0 10 {A193R:G -> A194R:A: adjacent_5p } 0 11 {A194R:A -> A193R:G: adjacent_3p } 0 12 {A193R:G -> A225R:A: pairing antiparallel trans 54 Ss/Hh } 0 13 {A225R:A -> A193R:G: pairing antiparallel trans 54 Hh/Ss } 0 14 {A194R:A -> A224R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 15 {A224R:U -> A194R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 16 {A194R:A -> A225R:A: outward } 0 17 {A225R:A -> A194R:A: outward } 0 18 {A224R:U -> A225R:A: adjacent_5p upward } 0 19 {A225R:A -> A224R:U: adjacent_3p downward } 0 20 {A225R:A -> A226R:G: adjacent_5p upward } 0 21 {A226R:G -> A225R:A: adjacent_3p downward } 0 22 {A226R:G -> A227R:G: adjacent_5p upward } 0 23 {A227R:G -> A226R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A198R:C 0 1 A199R:C 0 2 A200R:G 0 3 A201R:C 0 4 A220R:A 0 5 A221R:C 0 6 A222R:G 0 7 A223R:G 0 [Edges] 0 {A198R:C -> A199R:C: adjacent_5p } 0 1 {A199R:C -> A198R:C: adjacent_3p } 0 2 {A198R:C -> A223R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A223R:G -> A198R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A199R:C -> A200R:G: adjacent_5p upward } 0 5 {A200R:G -> A199R:C: adjacent_3p downward } 0 6 {A199R:C -> A222R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A222R:G -> A199R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A199R:C -> A223R:G: outward } 0 9 {A223R:G -> A199R:C: outward } 0 10 {A200R:G -> A201R:C: adjacent_5p upward } 0 11 {A201R:C -> A200R:G: adjacent_3p downward } 0 12 {A200R:G -> A221R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A221R:C -> A200R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A200R:G -> A222R:G: outward } 0 15 {A222R:G -> A200R:G: outward } 0 16 {A201R:C -> A220R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 17 {A220R:A -> A201R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 18 {A220R:A -> A221R:C: adjacent_5p upward } 0 19 {A221R:C -> A220R:A: adjacent_3p downward } 0 20 {A221R:C -> A222R:G: adjacent_5p upward } 0 21 {A222R:G -> A221R:C: adjacent_3p downward } 0 22 {A222R:G -> A223R:G: adjacent_5p upward } 0 23 {A223R:G -> A222R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A199R:C 0 1 A200R:G 0 2 A201R:C 0 3 A202R:C 0 4 A219R:A 0 5 A220R:A 0 6 A221R:C 0 7 A222R:G 0 [Edges] 0 {A199R:C -> A200R:G: adjacent_5p upward } 0 1 {A200R:G -> A199R:C: adjacent_3p downward } 0 2 {A199R:C -> A222R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A222R:G -> A199R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A200R:G -> A201R:C: adjacent_5p upward } 0 5 {A201R:C -> A200R:G: adjacent_3p downward } 0 6 {A200R:G -> A221R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A221R:C -> A200R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A200R:G -> A222R:G: outward } 0 9 {A222R:G -> A200R:G: outward } 0 10 {A201R:C -> A202R:C: adjacent_5p upward } 0 11 {A202R:C -> A201R:C: adjacent_3p downward } 0 12 {A201R:C -> A220R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 13 {A220R:A -> A201R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 14 {A202R:C -> A219R:A: pairing antiparallel trans one_hbond Bs/Hw } 0 15 {A219R:A -> A202R:C: pairing antiparallel trans one_hbond Hw/Bs } 0 16 {A219R:A -> A220R:A: adjacent_5p upward } 0 17 {A220R:A -> A219R:A: adjacent_3p downward } 0 18 {A220R:A -> A221R:C: adjacent_5p upward } 0 19 {A221R:C -> A220R:A: adjacent_3p downward } 0 20 {A221R:C -> A222R:G: adjacent_5p upward } 0 21 {A222R:G -> A221R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A200R:G 0 1 A201R:C 0 2 A202R:C 0 3 A203R:A 0 4 A218R:C 0 5 A219R:A 0 6 A220R:A 0 7 A221R:C 0 [Edges] 0 {A200R:G -> A201R:C: adjacent_5p upward } 0 1 {A201R:C -> A200R:G: adjacent_3p downward } 0 2 {A200R:G -> A221R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A221R:C -> A200R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A201R:C -> A202R:C: adjacent_5p upward } 0 5 {A202R:C -> A201R:C: adjacent_3p downward } 0 6 {A201R:C -> A220R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 7 {A220R:A -> A201R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 8 {A202R:C -> A203R:A: adjacent_5p } 0 9 {A203R:A -> A202R:C: adjacent_3p } 0 10 {A202R:C -> A219R:A: pairing antiparallel trans one_hbond Bs/Hw } 0 11 {A219R:A -> A202R:C: pairing antiparallel trans one_hbond Hw/Bs } 0 12 {A203R:A -> A218R:C: pairing antiparallel trans XXV Hh/Ww } 0 13 {A218R:C -> A203R:A: pairing antiparallel trans XXV Ww/Hh } 0 14 {A203R:A -> A219R:A: outward } 0 15 {A219R:A -> A203R:A: outward } 0 16 {A218R:C -> A219R:A: adjacent_5p upward } 0 17 {A219R:A -> A218R:C: adjacent_3p downward } 0 18 {A219R:A -> A220R:A: adjacent_5p upward } 0 19 {A220R:A -> A219R:A: adjacent_3p downward } 0 20 {A220R:A -> A221R:C: adjacent_5p upward } 0 21 {A221R:C -> A220R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A202R:C 0 1 A203R:A 0 2 A204R:G 0 3 A205R:G 0 4 A216R:A 0 5 A217R:G 0 6 A218R:C 0 7 A219R:A 0 [Edges] 0 {A202R:C -> A203R:A: adjacent_5p } 0 1 {A203R:A -> A202R:C: adjacent_3p } 0 2 {A202R:C -> A217R:G: inward } 0 3 {A217R:G -> A202R:C: inward } 0 4 {A202R:C -> A219R:A: pairing antiparallel trans one_hbond Bs/Hw } 0 5 {A219R:A -> A202R:C: pairing antiparallel trans one_hbond Hw/Bs } 0 6 {A203R:A -> A204R:G: adjacent_5p upward } 0 7 {A204R:G -> A203R:A: adjacent_3p downward } 0 8 {A203R:A -> A218R:C: pairing antiparallel trans XXV Hh/Ww } 0 9 {A218R:C -> A203R:A: pairing antiparallel trans XXV Ww/Hh } 0 10 {A203R:A -> A219R:A: outward } 0 11 {A219R:A -> A203R:A: outward } 0 12 {A204R:G -> A205R:G: adjacent_5p upward } 0 13 {A205R:G -> A204R:G: adjacent_3p downward } 0 14 {A205R:G -> A216R:A: pairing antiparallel cis VIII Ww/Ww } 0 15 {A216R:A -> A205R:G: pairing antiparallel cis VIII Ww/Ww } 0 16 {A216R:A -> A217R:G: adjacent_5p upward } 0 17 {A217R:G -> A216R:A: adjacent_3p downward } 0 18 {A217R:G -> A218R:C: adjacent_5p } 0 19 {A218R:C -> A217R:G: adjacent_3p } 0 20 {A218R:C -> A219R:A: adjacent_5p upward } 0 21 {A219R:A -> A218R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . 2 . 4 1 1 . 6 . . . 8 10 2 . 7 . 12 . . . . 3 . . 13 . 14 . . . 4 . . . 15 . 16 . . 5 3 . . . 17 . 18 . 6 . 9 . . . 19 . 20 7 5 11 . . . . 21 . [GraphModel] [Vertices] 0 A203R:A 0 1 A204R:G 0 2 A205R:G 0 3 A206R:C 0 4 A215R:G 0 5 A216R:A 0 6 A217R:G 0 7 A218R:C 0 [Edges] 0 {A203R:A -> A204R:G: adjacent_5p upward } 0 1 {A204R:G -> A203R:A: adjacent_3p downward } 0 2 {A203R:A -> A218R:C: pairing antiparallel trans XXV Hh/Ww } 0 3 {A218R:C -> A203R:A: pairing antiparallel trans XXV Ww/Hh } 0 4 {A204R:G -> A205R:G: adjacent_5p upward } 0 5 {A205R:G -> A204R:G: adjacent_3p downward } 0 6 {A205R:G -> A206R:C: adjacent_5p upward } 0 7 {A206R:C -> A205R:G: adjacent_3p downward } 0 8 {A205R:G -> A216R:A: pairing antiparallel cis VIII Ww/Ww } 0 9 {A216R:A -> A205R:G: pairing antiparallel cis VIII Ww/Ww } 0 10 {A206R:C -> A215R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A215R:G -> A206R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A215R:G -> A216R:A: adjacent_5p upward } 0 13 {A216R:A -> A215R:G: adjacent_3p downward } 0 14 {A216R:A -> A217R:G: adjacent_5p upward } 0 15 {A217R:G -> A216R:A: adjacent_3p downward } 0 16 {A217R:G -> A218R:C: adjacent_5p } 0 17 {A218R:C -> A217R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A205R:G 0 1 A206R:C 0 2 A207R:C 0 3 A208R:C 0 4 A213R:G 0 5 A214R:G 0 6 A215R:G 0 7 A216R:A 0 [Edges] 0 {A205R:G -> A206R:C: adjacent_5p upward } 0 1 {A206R:C -> A205R:G: adjacent_3p downward } 0 2 {A205R:G -> A216R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A216R:A -> A205R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A206R:C -> A207R:C: adjacent_5p } 0 5 {A207R:C -> A206R:C: adjacent_3p } 0 6 {A206R:C -> A215R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A215R:G -> A206R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A207R:C -> A208R:C: adjacent_5p upward } 0 9 {A208R:C -> A207R:C: adjacent_3p downward } 0 10 {A207R:C -> A214R:G: pairing antiparallel cis 128 Ww/Ww } 0 11 {A214R:G -> A207R:C: pairing antiparallel cis 128 Ww/Ww } 0 12 {A208R:C -> A213R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A213R:G -> A208R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A213R:G -> A214R:G: adjacent_5p upward } 0 15 {A214R:G -> A213R:G: adjacent_3p downward } 0 16 {A214R:G -> A215R:G: adjacent_5p upward } 0 17 {A215R:G -> A214R:G: adjacent_3p downward } 0 18 {A215R:G -> A216R:A: adjacent_5p upward } 0 19 {A216R:A -> A215R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A206R:C 0 1 A207R:C 0 2 A208R:C 0 3 A209R:G 0 4 A212R:A 0 5 A213R:G 0 6 A214R:G 0 7 A215R:G 0 [Edges] 0 {A206R:C -> A207R:C: adjacent_5p } 0 1 {A207R:C -> A206R:C: adjacent_3p } 0 2 {A206R:C -> A215R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A215R:G -> A206R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A207R:C -> A208R:C: adjacent_5p upward } 0 5 {A208R:C -> A207R:C: adjacent_3p downward } 0 6 {A207R:C -> A214R:G: pairing antiparallel cis 128 Ww/Ww } 0 7 {A214R:G -> A207R:C: pairing antiparallel cis 128 Ww/Ww } 0 8 {A208R:C -> A209R:G: adjacent_5p upward } 0 9 {A209R:G -> A208R:C: adjacent_3p downward } 0 10 {A208R:C -> A213R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A213R:G -> A208R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A209R:G -> A212R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {A212R:A -> A209R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {A212R:A -> A213R:G: adjacent_5p upward } 0 15 {A213R:G -> A212R:A: adjacent_3p downward } 0 16 {A213R:G -> A214R:G: adjacent_5p upward } 0 17 {A214R:G -> A213R:G: adjacent_3p downward } 0 18 {A214R:G -> A215R:G: adjacent_5p upward } 0 19 {A215R:G -> A214R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B2R:C 0 1 B3R:A 0 2 B4R:G 0 3 B5R:A 0 4 C28R:U 0 5 C29R:C 0 6 C30R:U 0 7 C31R:G 0 [Edges] 0 {B2R:C -> B3R:A: adjacent_5p upward } 0 1 {B3R:A -> B2R:C: adjacent_3p downward } 0 2 {B2R:C -> C31R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C31R:G -> B2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B3R:A -> B4R:G: adjacent_5p upward } 0 5 {B4R:G -> B3R:A: adjacent_3p downward } 0 6 {B3R:A -> C30R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C30R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B3R:A -> C31R:G: outward } 0 9 {C31R:G -> B3R:A: outward } 0 10 {B4R:G -> B5R:A: adjacent_5p upward } 0 11 {B5R:A -> B4R:G: adjacent_3p downward } 0 12 {B4R:G -> C29R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C29R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B5R:A -> C28R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {C28R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {C28R:U -> C29R:C: adjacent_5p upward } 0 17 {C29R:C -> C28R:U: adjacent_3p downward } 0 18 {C29R:C -> C30R:U: adjacent_5p upward } 0 19 {C30R:U -> C29R:C: adjacent_3p downward } 0 20 {C30R:U -> C31R:G: adjacent_5p upward } 0 21 {C31R:G -> C30R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B3R:A 0 1 B4R:G 0 2 B5R:A 0 3 B6R:C 0 4 C27R:A 0 5 C28R:U 0 6 C29R:C 0 7 C30R:U 0 [Edges] 0 {B3R:A -> B4R:G: adjacent_5p upward } 0 1 {B4R:G -> B3R:A: adjacent_3p downward } 0 2 {B3R:A -> C30R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C30R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B4R:G -> B5R:A: adjacent_5p upward } 0 5 {B5R:A -> B4R:G: adjacent_3p downward } 0 6 {B4R:G -> C29R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C29R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B5R:A -> B6R:C: adjacent_5p upward } 0 9 {B6R:C -> B5R:A: adjacent_3p downward } 0 10 {B5R:A -> C28R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C28R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B6R:C -> C27R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 13 {C27R:A -> B6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 14 {C27R:A -> C28R:U: adjacent_5p upward } 0 15 {C28R:U -> C27R:A: adjacent_3p downward } 0 16 {C28R:U -> C29R:C: adjacent_5p upward } 0 17 {C29R:C -> C28R:U: adjacent_3p downward } 0 18 {C29R:C -> C30R:U: adjacent_5p upward } 0 19 {C30R:U -> C29R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B4R:G 0 1 B5R:A 0 2 B6R:C 0 3 B7R:U 0 4 C26R:A 0 5 C27R:A 0 6 C28R:U 0 7 C29R:C 0 [Edges] 0 {B4R:G -> B5R:A: adjacent_5p upward } 0 1 {B5R:A -> B4R:G: adjacent_3p downward } 0 2 {B4R:G -> C29R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C29R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B5R:A -> B6R:C: adjacent_5p upward } 0 5 {B6R:C -> B5R:A: adjacent_3p downward } 0 6 {B5R:A -> C28R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C28R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B6R:C -> B7R:U: adjacent_5p } 0 9 {B7R:U -> B6R:C: adjacent_3p } 0 10 {B6R:C -> C27R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 11 {C27R:A -> B6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 12 {B7R:U -> C26R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {C26R:A -> B7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {C26R:A -> C27R:A: adjacent_5p upward } 0 15 {C27R:A -> C26R:A: adjacent_3p downward } 0 16 {C27R:A -> C28R:U: adjacent_5p upward } 0 17 {C28R:U -> C27R:A: adjacent_3p downward } 0 18 {C28R:U -> C29R:C: adjacent_5p upward } 0 19 {C29R:C -> C28R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B5R:A 0 1 B6R:C 0 2 B7R:U 0 3 B8R:U 0 4 C25R:A 0 5 C26R:A 0 6 C27R:A 0 7 C28R:U 0 [Edges] 0 {B5R:A -> B6R:C: adjacent_5p upward } 0 1 {B6R:C -> B5R:A: adjacent_3p downward } 0 2 {B5R:A -> C28R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C28R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B6R:C -> B7R:U: adjacent_5p } 0 5 {B7R:U -> B6R:C: adjacent_3p } 0 6 {B6R:C -> C27R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 7 {C27R:A -> B6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 8 {B7R:U -> B8R:U: adjacent_5p upward } 0 9 {B8R:U -> B7R:U: adjacent_3p downward } 0 10 {B7R:U -> C26R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C26R:A -> B7R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B8R:U -> C25R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {C25R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {C25R:A -> C26R:A: adjacent_5p upward } 0 15 {C26R:A -> C25R:A: adjacent_3p downward } 0 16 {C26R:A -> C27R:A: adjacent_5p upward } 0 17 {C27R:A -> C26R:A: adjacent_3p downward } 0 18 {C27R:A -> C28R:U: adjacent_5p upward } 0 19 {C28R:U -> C27R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B6R:C 0 1 B7R:U 0 2 B8R:U 0 3 B9R:A 0 4 C24R:U 0 5 C25R:A 0 6 C26R:A 0 7 C27R:A 0 [Edges] 0 {B6R:C -> B7R:U: adjacent_5p } 0 1 {B7R:U -> B6R:C: adjacent_3p } 0 2 {B6R:C -> C27R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 3 {C27R:A -> B6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 4 {B7R:U -> B8R:U: adjacent_5p upward } 0 5 {B8R:U -> B7R:U: adjacent_3p downward } 0 6 {B7R:U -> C26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C26R:A -> B7R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B8R:U -> B9R:A: adjacent_5p upward } 0 9 {B9R:A -> B8R:U: adjacent_3p downward } 0 10 {B8R:U -> C25R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C25R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B9R:A -> C24R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {C24R:U -> B9R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B9R:A -> C25R:A: outward } 0 15 {C25R:A -> B9R:A: outward } 0 16 {C24R:U -> C25R:A: adjacent_5p upward } 0 17 {C25R:A -> C24R:U: adjacent_3p downward } 0 18 {C25R:A -> C26R:A: adjacent_5p upward } 0 19 {C26R:A -> C25R:A: adjacent_3p downward } 0 20 {C26R:A -> C27R:A: adjacent_5p upward } 0 21 {C27R:A -> C26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B7R:U 0 1 B8R:U 0 2 B9R:A 0 3 B10R:A 0 4 C23R:U 0 5 C24R:U 0 6 C25R:A 0 7 C26R:A 0 [Edges] 0 {B7R:U -> B8R:U: adjacent_5p upward } 0 1 {B8R:U -> B7R:U: adjacent_3p downward } 0 2 {B7R:U -> C26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C26R:A -> B7R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B8R:U -> B9R:A: adjacent_5p upward } 0 5 {B9R:A -> B8R:U: adjacent_3p downward } 0 6 {B8R:U -> C25R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C25R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B9R:A -> B10R:A: adjacent_5p upward } 0 9 {B10R:A -> B9R:A: adjacent_3p downward } 0 10 {B9R:A -> C24R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C24R:U -> B9R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B9R:A -> C25R:A: outward } 0 13 {C25R:A -> B9R:A: outward } 0 14 {B10R:A -> C23R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {C23R:U -> B10R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {C23R:U -> C24R:U: adjacent_5p upward } 0 17 {C24R:U -> C23R:U: adjacent_3p downward } 0 18 {C24R:U -> C25R:A: adjacent_5p upward } 0 19 {C25R:A -> C24R:U: adjacent_3p downward } 0 20 {C25R:A -> C26R:A: adjacent_5p upward } 0 21 {C26R:A -> C25R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B8R:U 0 1 B9R:A 0 2 B10R:A 0 3 B11R:A 0 4 C22R:C 0 5 C23R:U 0 6 C24R:U 0 7 C25R:A 0 [Edges] 0 {B8R:U -> B9R:A: adjacent_5p upward } 0 1 {B9R:A -> B8R:U: adjacent_3p downward } 0 2 {B8R:U -> C25R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C25R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B9R:A -> B10R:A: adjacent_5p upward } 0 5 {B10R:A -> B9R:A: adjacent_3p downward } 0 6 {B9R:A -> C24R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C24R:U -> B9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B9R:A -> C25R:A: outward } 0 9 {C25R:A -> B9R:A: outward } 0 10 {B10R:A -> B11R:A: adjacent_5p upward } 0 11 {B11R:A -> B10R:A: adjacent_3p downward } 0 12 {B10R:A -> C23R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {C23R:U -> B10R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B11R:A -> C22R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 15 {C22R:C -> B11R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 16 {C22R:C -> C23R:U: adjacent_5p } 0 17 {C23R:U -> C22R:C: adjacent_3p } 0 18 {C23R:U -> C24R:U: adjacent_5p upward } 0 19 {C24R:U -> C23R:U: adjacent_3p downward } 0 20 {C24R:U -> C25R:A: adjacent_5p upward } 0 21 {C25R:A -> C24R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B9R:A 0 1 B10R:A 0 2 B11R:A 0 3 B12R:U 0 4 C21R:A 0 5 C22R:C 0 6 C23R:U 0 7 C24R:U 0 [Edges] 0 {B9R:A -> B10R:A: adjacent_5p upward } 0 1 {B10R:A -> B9R:A: adjacent_3p downward } 0 2 {B9R:A -> C24R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C24R:U -> B9R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B10R:A -> B11R:A: adjacent_5p upward } 0 5 {B11R:A -> B10R:A: adjacent_3p downward } 0 6 {B10R:A -> C23R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C23R:U -> B10R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B11R:A -> B12R:U: adjacent_5p upward } 0 9 {B12R:U -> B11R:A: adjacent_3p downward } 0 10 {B11R:A -> C22R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 11 {C22R:C -> B11R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 12 {B12R:U -> C21R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {C21R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {C21R:A -> C22R:C: adjacent_5p upward } 0 15 {C22R:C -> C21R:A: adjacent_3p downward } 0 16 {C22R:C -> C23R:U: adjacent_5p } 0 17 {C23R:U -> C22R:C: adjacent_3p } 0 18 {C23R:U -> C24R:U: adjacent_5p upward } 0 19 {C24R:U -> C23R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B10R:A 0 1 B11R:A 0 2 B12R:U 0 3 B13R:C 0 4 C20R:G 0 5 C21R:A 0 6 C22R:C 0 7 C23R:U 0 [Edges] 0 {B10R:A -> B11R:A: adjacent_5p upward } 0 1 {B11R:A -> B10R:A: adjacent_3p downward } 0 2 {B10R:A -> C23R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C23R:U -> B10R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B11R:A -> B12R:U: adjacent_5p upward } 0 5 {B12R:U -> B11R:A: adjacent_3p downward } 0 6 {B11R:A -> C22R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 7 {C22R:C -> B11R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 8 {B12R:U -> B13R:C: adjacent_5p } 0 9 {B13R:C -> B12R:U: adjacent_3p } 0 10 {B12R:U -> C21R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C21R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B13R:C -> C20R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C20R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C20R:G -> C21R:A: adjacent_5p upward } 0 15 {C21R:A -> C20R:G: adjacent_3p downward } 0 16 {C21R:A -> C22R:C: adjacent_5p upward } 0 17 {C22R:C -> C21R:A: adjacent_3p downward } 0 18 {C22R:C -> C23R:U: adjacent_5p } 0 19 {C23R:U -> C22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B11R:A 0 1 B12R:U 0 2 B13R:C 0 3 B14R:U 0 4 C19R:A 0 5 C20R:G 0 6 C21R:A 0 7 C22R:C 0 [Edges] 0 {B11R:A -> B12R:U: adjacent_5p upward } 0 1 {B12R:U -> B11R:A: adjacent_3p downward } 0 2 {B11R:A -> C22R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 3 {C22R:C -> B11R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 4 {B12R:U -> B13R:C: adjacent_5p } 0 5 {B13R:C -> B12R:U: adjacent_3p } 0 6 {B12R:U -> C21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C21R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B13R:C -> B14R:U: adjacent_5p upward } 0 9 {B14R:U -> B13R:C: adjacent_3p downward } 0 10 {B13R:C -> C20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C20R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B14R:U -> C19R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {C19R:A -> B14R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {C19R:A -> C20R:G: adjacent_5p upward } 0 15 {C20R:G -> C19R:A: adjacent_3p downward } 0 16 {C20R:G -> C21R:A: adjacent_5p upward } 0 17 {C21R:A -> C20R:G: adjacent_3p downward } 0 18 {C21R:A -> C22R:C: adjacent_5p upward } 0 19 {C22R:C -> C21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B12R:U 0 1 B13R:C 0 2 B14R:U 0 3 B15R:G 0 4 C18R:C 0 5 C19R:A 0 6 C20R:G 0 7 C21R:A 0 [Edges] 0 {B12R:U -> B13R:C: adjacent_5p } 0 1 {B13R:C -> B12R:U: adjacent_3p } 0 2 {B12R:U -> C21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C21R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B13R:C -> B14R:U: adjacent_5p upward } 0 5 {B14R:U -> B13R:C: adjacent_3p downward } 0 6 {B13R:C -> C20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C20R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B14R:U -> B15R:G: adjacent_5p upward } 0 9 {B15R:G -> B14R:U: adjacent_3p downward } 0 10 {B14R:U -> C19R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C19R:A -> B14R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B15R:G -> C18R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C18R:C -> B15R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B15R:G -> C19R:A: outward } 0 15 {C19R:A -> B15R:G: outward } 0 16 {C18R:C -> C19R:A: adjacent_5p } 0 17 {C19R:A -> C18R:C: adjacent_3p } 0 18 {C19R:A -> C20R:G: adjacent_5p upward } 0 19 {C20R:G -> C19R:A: adjacent_3p downward } 0 20 {C20R:G -> C21R:A: adjacent_5p upward } 0 21 {C21R:A -> C20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:G 0 2 A3R:C 0 3 A4R:G 0 4 A38R:U 0 5 A39R:G 0 6 A40R:C 0 7 A41R:C 0 [Edges] 0 {A1R:G -> A2R:G: adjacent_5p upward } 0 1 {A2R:G -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> A41R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A41R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:G -> A3R:C: adjacent_5p upward } 0 5 {A3R:C -> A2R:G: adjacent_3p downward } 0 6 {A2R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A40R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:C -> A4R:G: adjacent_5p upward } 0 9 {A4R:G -> A3R:C: adjacent_3p downward } 0 10 {A3R:C -> A39R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A39R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A38R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A38R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A4R:G -> A39R:G: outward } 0 15 {A39R:G -> A4R:G: outward } 0 16 {A38R:U -> A39R:G: adjacent_5p upward } 0 17 {A39R:G -> A38R:U: adjacent_3p downward } 0 18 {A39R:G -> A40R:C: adjacent_5p upward } 0 19 {A40R:C -> A39R:G: adjacent_3p downward } 0 20 {A40R:C -> A41R:C: adjacent_5p upward } 0 21 {A41R:C -> A40R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:A 0 4 A37R:U 0 5 A38R:U 0 6 A39R:G 0 7 A40R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A40R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A39R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A39R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A38R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A38R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A4R:G -> A39R:G: outward } 0 13 {A39R:G -> A4R:G: outward } 0 14 {A5R:A -> A37R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A37R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A37R:U -> A38R:U: adjacent_5p upward } 0 17 {A38R:U -> A37R:U: adjacent_3p downward } 0 18 {A38R:U -> A39R:G: adjacent_5p upward } 0 19 {A39R:G -> A38R:U: adjacent_3p downward } 0 20 {A39R:G -> A40R:C: adjacent_5p upward } 0 21 {A40R:C -> A39R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:A 0 3 A6R:U 0 4 A36R:A 0 5 A37R:U 0 6 A38R:U 0 7 A39R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A39R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A39R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A38R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A38R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A4R:G -> A39R:G: outward } 0 9 {A39R:G -> A4R:G: outward } 0 10 {A5R:A -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:A: adjacent_3p downward } 0 12 {A5R:A -> A37R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A37R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A6R:U -> A36R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A36R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A36R:A -> A37R:U: adjacent_5p upward } 0 17 {A37R:U -> A36R:A: adjacent_3p downward } 0 18 {A37R:U -> A38R:U: adjacent_5p upward } 0 19 {A38R:U -> A37R:U: adjacent_3p downward } 0 20 {A38R:U -> A39R:G: adjacent_5p upward } 0 21 {A39R:G -> A38R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:U 0 2 A9R:G 0 3 A10R:G 0 4 A29R:C 0 5 A30R:C 0 6 A31R:A 0 7 A32R:G 0 [Edges] 0 {A7R:C -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> A32R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A32R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:U -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> A31R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A31R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:G -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A30R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:G -> A31R:A: outward } 0 13 {A31R:A -> A9R:G: outward } 0 14 {A10R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A29R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A29R:C -> A30R:C: adjacent_5p upward } 0 17 {A30R:C -> A29R:C: adjacent_3p downward } 0 18 {A30R:C -> A31R:A: adjacent_5p upward } 0 19 {A31R:A -> A30R:C: adjacent_3p downward } 0 20 {A31R:A -> A32R:G: adjacent_5p upward } 0 21 {A32R:G -> A31R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:G 0 2 A10R:G 0 3 A11R:C 0 4 A28R:G 0 5 A29R:C 0 6 A30R:C 0 7 A31R:A 0 [Edges] 0 {A8R:U -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:U: adjacent_3p downward } 0 2 {A8R:U -> A31R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A31R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:G -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A30R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> A31R:A: outward } 0 9 {A31R:A -> A9R:G: outward } 0 10 {A10R:G -> A11R:C: adjacent_5p upward } 0 11 {A11R:C -> A10R:G: adjacent_3p downward } 0 12 {A10R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A29R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A11R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A28R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A28R:G -> A29R:C: adjacent_5p upward } 0 17 {A29R:C -> A28R:G: adjacent_3p downward } 0 18 {A29R:C -> A30R:C: adjacent_5p upward } 0 19 {A30R:C -> A29R:C: adjacent_3p downward } 0 20 {A30R:C -> A31R:A: adjacent_5p upward } 0 21 {A31R:A -> A30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:G 0 2 A11R:C 0 3 A12R:C 0 4 A27R:G 0 5 A28R:G 0 6 A29R:C 0 7 A30R:C 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A30R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:G -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:G: adjacent_3p downward } 0 6 {A10R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A29R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:C -> A12R:C: adjacent_5p upward } 0 9 {A12R:C -> A11R:C: adjacent_3p downward } 0 10 {A11R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A28R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A27R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A27R:G -> A28R:G: adjacent_5p upward } 0 15 {A28R:G -> A27R:G: adjacent_3p downward } 0 16 {A28R:G -> A29R:C: adjacent_5p upward } 0 17 {A29R:C -> A28R:G: adjacent_3p downward } 0 18 {A29R:C -> A30R:C: adjacent_5p upward } 0 19 {A30R:C -> A29R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:C 0 2 A12R:C 0 3 A13R:U 0 4 A26R:A 0 5 A27R:G 0 6 A28R:G 0 7 A29R:C 0 [Edges] 0 {A10R:G -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A29R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:C -> A12R:C: adjacent_5p upward } 0 5 {A12R:C -> A11R:C: adjacent_3p downward } 0 6 {A11R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A28R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:C -> A13R:U: adjacent_5p upward } 0 9 {A13R:U -> A12R:C: adjacent_3p downward } 0 10 {A12R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A27R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A26R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A26R:A -> A27R:G: adjacent_5p upward } 0 15 {A27R:G -> A26R:A: adjacent_3p downward } 0 16 {A27R:G -> A28R:G: adjacent_5p upward } 0 17 {A28R:G -> A27R:G: adjacent_3p downward } 0 18 {A28R:G -> A29R:C: adjacent_5p upward } 0 19 {A29R:C -> A28R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:C 0 2 A13R:U 0 3 A14R:U 0 4 A25R:A 0 5 A26R:A 0 6 A27R:G 0 7 A28R:G 0 [Edges] 0 {A11R:C -> A12R:C: adjacent_5p upward } 0 1 {A12R:C -> A11R:C: adjacent_3p downward } 0 2 {A11R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A28R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:C -> A13R:U: adjacent_5p upward } 0 5 {A13R:U -> A12R:C: adjacent_3p downward } 0 6 {A12R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A27R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:U -> A14R:U: adjacent_5p upward } 0 9 {A14R:U -> A13R:U: adjacent_3p downward } 0 10 {A13R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A26R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A14R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A25R:A -> A14R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A25R:A -> A26R:A: adjacent_5p upward } 0 15 {A26R:A -> A25R:A: adjacent_3p downward } 0 16 {A26R:A -> A27R:G: adjacent_5p upward } 0 17 {A27R:G -> A26R:A: adjacent_3p downward } 0 18 {A27R:G -> A28R:G: adjacent_5p upward } 0 19 {A28R:G -> A27R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A12R:C 0 1 A13R:U 0 2 A14R:U 0 3 A15R:C 0 4 A24R:G 0 5 A25R:A 0 6 A26R:A 0 7 A27R:G 0 [Edges] 0 {A12R:C -> A13R:U: adjacent_5p upward } 0 1 {A13R:U -> A12R:C: adjacent_3p downward } 0 2 {A12R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:U -> A14R:U: adjacent_5p upward } 0 5 {A14R:U -> A13R:U: adjacent_3p downward } 0 6 {A13R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A26R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A14R:U -> A15R:C: adjacent_5p upward } 0 9 {A15R:C -> A14R:U: adjacent_3p downward } 0 10 {A14R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A25R:A -> A14R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A15R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A24R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A24R:G -> A25R:A: adjacent_5p upward } 0 15 {A25R:A -> A24R:G: adjacent_3p downward } 0 16 {A25R:A -> A26R:A: adjacent_5p upward } 0 17 {A26R:A -> A25R:A: adjacent_3p downward } 0 18 {A26R:A -> A27R:G: adjacent_5p upward } 0 19 {A27R:G -> A26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A13R:U 0 1 A14R:U 0 2 A15R:C 0 3 A16R:C 0 4 A23R:G 0 5 A24R:G 0 6 A25R:A 0 7 A26R:A 0 [Edges] 0 {A13R:U -> A14R:U: adjacent_5p upward } 0 1 {A14R:U -> A13R:U: adjacent_3p downward } 0 2 {A13R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A26R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A14R:U -> A15R:C: adjacent_5p upward } 0 5 {A15R:C -> A14R:U: adjacent_3p downward } 0 6 {A14R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A25R:A -> A14R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A15R:C -> A16R:C: adjacent_5p upward } 0 9 {A16R:C -> A15R:C: adjacent_3p downward } 0 10 {A15R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A24R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A16R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A23R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A23R:G -> A24R:G: adjacent_5p upward } 0 15 {A24R:G -> A23R:G: adjacent_3p downward } 0 16 {A24R:G -> A25R:A: adjacent_5p upward } 0 17 {A25R:A -> A24R:G: adjacent_3p downward } 0 18 {A25R:A -> A26R:A: adjacent_5p upward } 0 19 {A26R:A -> A25R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A14R:U 0 1 A15R:C 0 2 A16R:C 0 3 A17R:U 0 4 A22R:G 0 5 A23R:G 0 6 A24R:G 0 7 A25R:A 0 [Edges] 0 {A14R:U -> A15R:C: adjacent_5p upward } 0 1 {A15R:C -> A14R:U: adjacent_3p downward } 0 2 {A14R:U -> A25R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A25R:A -> A14R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A15R:C -> A16R:C: adjacent_5p upward } 0 5 {A16R:C -> A15R:C: adjacent_3p downward } 0 6 {A15R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A24R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A16R:C -> A17R:U: adjacent_5p upward } 0 9 {A17R:U -> A16R:C: adjacent_3p downward } 0 10 {A16R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A23R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A17R:U -> A22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A22R:G -> A17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A22R:G -> A23R:G: adjacent_5p upward } 0 15 {A23R:G -> A22R:G: adjacent_3p downward } 0 16 {A23R:G -> A24R:G: adjacent_5p upward } 0 17 {A24R:G -> A23R:G: adjacent_3p downward } 0 18 {A24R:G -> A25R:A: adjacent_5p upward } 0 19 {A25R:A -> A24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:C 0 3 A6R:U 0 4 A18R:A 0 5 A19R:G 0 6 A20R:C 0 7 A21R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A21R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A21R:A: outward } 0 9 {A21R:A -> A4R:G: outward } 0 10 {A5R:C -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:C: adjacent_3p downward } 0 12 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A18R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A18R:A -> A19R:G: adjacent_5p upward } 0 17 {A19R:G -> A18R:A: adjacent_3p downward } 0 18 {A19R:G -> A20R:C: adjacent_5p upward } 0 19 {A20R:C -> A19R:G: adjacent_3p downward } 0 20 {A20R:C -> A21R:A: adjacent_5p upward } 0 21 {A21R:A -> A20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:C 0 2 A6R:U 0 3 A7R:G 0 4 A17R:C 0 5 A18R:A 0 6 A19R:G 0 7 A20R:C 0 [Edges] 0 {A4R:G -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:U -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:U: adjacent_3p downward } 0 10 {A6R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A18R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:G -> A18R:A: outward } 0 15 {A18R:A -> A7R:G: outward } 0 16 {A17R:C -> A18R:A: adjacent_5p upward } 0 17 {A18R:A -> A17R:C: adjacent_3p downward } 0 18 {A18R:A -> A19R:G: adjacent_5p upward } 0 19 {A19R:G -> A18R:A: adjacent_3p downward } 0 20 {A19R:G -> A20R:C: adjacent_5p upward } 0 21 {A20R:C -> A19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:U 0 2 A12R:G 0 3 A13R:C 0 4 B12R:G 0 5 B13R:C 0 6 B14R:A 0 7 B15R:C 0 [Edges] 0 {A10R:G -> A11R:U: adjacent_5p upward } 0 1 {A11R:U -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:U -> A12R:G: adjacent_5p upward } 0 5 {A12R:G -> A11R:U: adjacent_3p downward } 0 6 {A11R:U -> B14R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B14R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A12R:G -> A13R:C: adjacent_5p upward } 0 9 {A13R:C -> A12R:G: adjacent_3p downward } 0 10 {A12R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B13R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:G -> B14R:A: outward } 0 13 {B14R:A -> A12R:G: outward } 0 14 {A13R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B12R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B12R:G -> B13R:C: adjacent_5p upward } 0 17 {B13R:C -> B12R:G: adjacent_3p downward } 0 18 {B13R:C -> B14R:A: adjacent_5p upward } 0 19 {B14R:A -> B13R:C: adjacent_3p downward } 0 20 {B14R:A -> B15R:C: adjacent_5p upward } 0 21 {B15R:C -> B14R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:G 0 2 A13R:C 0 3 A14R:A 0 4 B11R:U 0 5 B12R:G 0 6 B13R:C 0 7 B14R:A 0 [Edges] 0 {A11R:U -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:U: adjacent_3p downward } 0 2 {A11R:U -> B14R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B14R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A12R:G -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B13R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> B14R:A: outward } 0 9 {B14R:A -> A12R:G: outward } 0 10 {A13R:C -> A14R:A: adjacent_5p } 0 11 {A14R:A -> A13R:C: adjacent_3p } 0 12 {A13R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B12R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:A -> B11R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B11R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A14R:A -> B12R:G: outward } 0 17 {B12R:G -> A14R:A: outward } 0 18 {B11R:U -> B12R:G: adjacent_5p upward } 0 19 {B12R:G -> B11R:U: adjacent_3p downward } 0 20 {B12R:G -> B13R:C: adjacent_5p upward } 0 21 {B13R:C -> B12R:G: adjacent_3p downward } 0 22 {B13R:C -> B14R:A: adjacent_5p upward } 0 23 {B14R:A -> B13R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:C 0 2 A14R:A 0 3 A15R:C 0 4 B10R:G 0 5 B11R:U 0 6 B12R:G 0 7 B13R:C 0 [Edges] 0 {A12R:G -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B13R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:C -> A14R:A: adjacent_5p } 0 5 {A14R:A -> A13R:C: adjacent_3p } 0 6 {A13R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:A -> A15R:C: adjacent_5p upward } 0 9 {A15R:C -> A14R:A: adjacent_3p downward } 0 10 {A14R:A -> B11R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B11R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A14R:A -> B12R:G: outward } 0 13 {B12R:G -> A14R:A: outward } 0 14 {A15R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B10R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B10R:G -> B11R:U: adjacent_5p upward } 0 17 {B11R:U -> B10R:G: adjacent_3p downward } 0 18 {B11R:U -> B12R:G: adjacent_5p upward } 0 19 {B12R:G -> B11R:U: adjacent_3p downward } 0 20 {B12R:G -> B13R:C: adjacent_5p upward } 0 21 {B13R:C -> B12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B3R:U 0 1 B4R:G 0 2 B5R:C 0 3 B6R:U 0 4 B18R:A 0 5 B19R:G 0 6 B20R:C 0 7 B21R:A 0 [Edges] 0 {B3R:U -> B4R:G: adjacent_5p upward } 0 1 {B4R:G -> B3R:U: adjacent_3p downward } 0 2 {B3R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B21R:A -> B3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B4R:G -> B5R:C: adjacent_5p upward } 0 5 {B5R:C -> B4R:G: adjacent_3p downward } 0 6 {B4R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B20R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B4R:G -> B21R:A: outward } 0 9 {B21R:A -> B4R:G: outward } 0 10 {B5R:C -> B6R:U: adjacent_5p upward } 0 11 {B6R:U -> B5R:C: adjacent_3p downward } 0 12 {B5R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B19R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B6R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B18R:A -> B6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B18R:A -> B19R:G: adjacent_5p upward } 0 17 {B19R:G -> B18R:A: adjacent_3p downward } 0 18 {B19R:G -> B20R:C: adjacent_5p upward } 0 19 {B20R:C -> B19R:G: adjacent_3p downward } 0 20 {B20R:C -> B21R:A: adjacent_5p upward } 0 21 {B21R:A -> B20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B4R:G 0 1 B5R:C 0 2 B6R:U 0 3 B7R:G 0 4 B17R:C 0 5 B18R:A 0 6 B19R:G 0 7 B20R:C 0 [Edges] 0 {B4R:G -> B5R:C: adjacent_5p upward } 0 1 {B5R:C -> B4R:G: adjacent_3p downward } 0 2 {B4R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B20R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B5R:C -> B6R:U: adjacent_5p upward } 0 5 {B6R:U -> B5R:C: adjacent_3p downward } 0 6 {B5R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B19R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B6R:U -> B7R:G: adjacent_5p upward } 0 9 {B7R:G -> B6R:U: adjacent_3p downward } 0 10 {B6R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B18R:A -> B6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B7R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B17R:C -> B7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B7R:G -> B18R:A: outward } 0 15 {B18R:A -> B7R:G: outward } 0 16 {B17R:C -> B18R:A: adjacent_5p upward } 0 17 {B18R:A -> B17R:C: adjacent_3p downward } 0 18 {B18R:A -> B19R:G: adjacent_5p upward } 0 19 {B19R:G -> B18R:A: adjacent_3p downward } 0 20 {B19R:G -> B20R:C: adjacent_5p upward } 0 21 {B20R:C -> B19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C3R:U 0 1 C4R:G 0 2 C5R:C 0 3 C6R:U 0 4 C18R:A 0 5 C19R:G 0 6 C20R:C 0 7 C21R:A 0 [Edges] 0 {C3R:U -> C4R:G: adjacent_5p upward } 0 1 {C4R:G -> C3R:U: adjacent_3p downward } 0 2 {C3R:U -> C21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C21R:A -> C3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C4R:G -> C5R:C: adjacent_5p upward } 0 5 {C5R:C -> C4R:G: adjacent_3p downward } 0 6 {C4R:G -> C20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C20R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:G -> C21R:A: outward } 0 9 {C21R:A -> C4R:G: outward } 0 10 {C5R:C -> C6R:U: adjacent_5p upward } 0 11 {C6R:U -> C5R:C: adjacent_3p downward } 0 12 {C5R:C -> C19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C19R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C6R:U -> C18R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {C18R:A -> C6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {C18R:A -> C19R:G: adjacent_5p upward } 0 17 {C19R:G -> C18R:A: adjacent_3p downward } 0 18 {C19R:G -> C20R:C: adjacent_5p upward } 0 19 {C20R:C -> C19R:G: adjacent_3p downward } 0 20 {C20R:C -> C21R:A: adjacent_5p upward } 0 21 {C21R:A -> C20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C4R:G 0 1 C5R:C 0 2 C6R:U 0 3 C7R:G 0 4 C17R:C 0 5 C18R:A 0 6 C19R:G 0 7 C20R:C 0 [Edges] 0 {C4R:G -> C5R:C: adjacent_5p upward } 0 1 {C5R:C -> C4R:G: adjacent_3p downward } 0 2 {C4R:G -> C20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C20R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C5R:C -> C6R:U: adjacent_5p upward } 0 5 {C6R:U -> C5R:C: adjacent_3p downward } 0 6 {C5R:C -> C19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C19R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C6R:U -> C7R:G: adjacent_5p upward } 0 9 {C7R:G -> C6R:U: adjacent_3p downward } 0 10 {C6R:U -> C18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C18R:A -> C6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C7R:G -> C17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C17R:C -> C7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C7R:G -> C18R:A: outward } 0 15 {C18R:A -> C7R:G: outward } 0 16 {C17R:C -> C18R:A: adjacent_5p upward } 0 17 {C18R:A -> C17R:C: adjacent_3p downward } 0 18 {C18R:A -> C19R:G: adjacent_5p upward } 0 19 {C19R:G -> C18R:A: adjacent_3p downward } 0 20 {C19R:G -> C20R:C: adjacent_5p upward } 0 21 {C20R:C -> C19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C10R:G 0 1 C11R:U 0 2 C12R:G 0 3 C13R:C 0 4 D12R:G 0 5 D13R:C 0 6 D14R:A 0 7 D15R:C 0 [Edges] 0 {C10R:G -> C11R:U: adjacent_5p upward } 0 1 {C11R:U -> C10R:G: adjacent_3p downward } 0 2 {C10R:G -> D15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D15R:C -> C10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C11R:U -> C12R:G: adjacent_5p upward } 0 5 {C12R:G -> C11R:U: adjacent_3p downward } 0 6 {C11R:U -> D14R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D14R:A -> C11R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C12R:G -> C13R:C: adjacent_5p upward } 0 9 {C13R:C -> C12R:G: adjacent_3p downward } 0 10 {C12R:G -> D13R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D13R:C -> C12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C12R:G -> D14R:A: outward } 0 13 {D14R:A -> C12R:G: outward } 0 14 {C13R:C -> D12R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D12R:G -> C13R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D12R:G -> D13R:C: adjacent_5p upward } 0 17 {D13R:C -> D12R:G: adjacent_3p downward } 0 18 {D13R:C -> D14R:A: adjacent_5p } 0 19 {D14R:A -> D13R:C: adjacent_3p } 0 20 {D14R:A -> D15R:C: adjacent_5p upward } 0 21 {D15R:C -> D14R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C11R:U 0 1 C12R:G 0 2 C13R:C 0 3 C14R:A 0 4 D11R:U 0 5 D12R:G 0 6 D13R:C 0 7 D14R:A 0 [Edges] 0 {C11R:U -> C12R:G: adjacent_5p upward } 0 1 {C12R:G -> C11R:U: adjacent_3p downward } 0 2 {C11R:U -> D14R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D14R:A -> C11R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C12R:G -> C13R:C: adjacent_5p upward } 0 5 {C13R:C -> C12R:G: adjacent_3p downward } 0 6 {C12R:G -> D13R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D13R:C -> C12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C12R:G -> D14R:A: outward } 0 9 {D14R:A -> C12R:G: outward } 0 10 {C13R:C -> C14R:A: adjacent_5p } 0 11 {C14R:A -> C13R:C: adjacent_3p } 0 12 {C13R:C -> D12R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D12R:G -> C13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C14R:A -> D11R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {D11R:U -> C14R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {C14R:A -> D12R:G: outward } 0 17 {D12R:G -> C14R:A: outward } 0 18 {D11R:U -> D12R:G: adjacent_5p upward } 0 19 {D12R:G -> D11R:U: adjacent_3p downward } 0 20 {D12R:G -> D13R:C: adjacent_5p upward } 0 21 {D13R:C -> D12R:G: adjacent_3p downward } 0 22 {D13R:C -> D14R:A: adjacent_5p } 0 23 {D14R:A -> D13R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 C12R:G 0 1 C13R:C 0 2 C14R:A 0 3 C15R:C 0 4 D10R:G 0 5 D11R:U 0 6 D12R:G 0 7 D13R:C 0 [Edges] 0 {C12R:G -> C13R:C: adjacent_5p upward } 0 1 {C13R:C -> C12R:G: adjacent_3p downward } 0 2 {C12R:G -> D13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D13R:C -> C12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C13R:C -> C14R:A: adjacent_5p } 0 5 {C14R:A -> C13R:C: adjacent_3p } 0 6 {C13R:C -> D12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D12R:G -> C13R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C14R:A -> C15R:C: adjacent_5p upward } 0 9 {C15R:C -> C14R:A: adjacent_3p downward } 0 10 {C14R:A -> D11R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D11R:U -> C14R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C14R:A -> D12R:G: outward } 0 13 {D12R:G -> C14R:A: outward } 0 14 {C15R:C -> D10R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D10R:G -> C15R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D10R:G -> D11R:U: adjacent_5p upward } 0 17 {D11R:U -> D10R:G: adjacent_3p downward } 0 18 {D11R:U -> D12R:G: adjacent_5p upward } 0 19 {D12R:G -> D11R:U: adjacent_3p downward } 0 20 {D12R:G -> D13R:C: adjacent_5p upward } 0 21 {D13R:C -> D12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D3R:U 0 1 D4R:G 0 2 D5R:C 0 3 D6R:U 0 4 D18R:A 0 5 D19R:G 0 6 D20R:C 0 7 D21R:A 0 [Edges] 0 {D3R:U -> D4R:G: adjacent_5p upward } 0 1 {D4R:G -> D3R:U: adjacent_3p downward } 0 2 {D3R:U -> D21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D21R:A -> D3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D4R:G -> D5R:C: adjacent_5p upward } 0 5 {D5R:C -> D4R:G: adjacent_3p downward } 0 6 {D4R:G -> D20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D20R:C -> D4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D4R:G -> D21R:A: outward } 0 9 {D21R:A -> D4R:G: outward } 0 10 {D5R:C -> D6R:U: adjacent_5p upward } 0 11 {D6R:U -> D5R:C: adjacent_3p downward } 0 12 {D5R:C -> D19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D19R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D6R:U -> D18R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {D18R:A -> D6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {D18R:A -> D19R:G: adjacent_5p upward } 0 17 {D19R:G -> D18R:A: adjacent_3p downward } 0 18 {D19R:G -> D20R:C: adjacent_5p upward } 0 19 {D20R:C -> D19R:G: adjacent_3p downward } 0 20 {D20R:C -> D21R:A: adjacent_5p upward } 0 21 {D21R:A -> D20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D4R:G 0 1 D5R:C 0 2 D6R:U 0 3 D7R:G 0 4 D17R:C 0 5 D18R:A 0 6 D19R:G 0 7 D20R:C 0 [Edges] 0 {D4R:G -> D5R:C: adjacent_5p upward } 0 1 {D5R:C -> D4R:G: adjacent_3p downward } 0 2 {D4R:G -> D20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D20R:C -> D4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D5R:C -> D6R:U: adjacent_5p upward } 0 5 {D6R:U -> D5R:C: adjacent_3p downward } 0 6 {D5R:C -> D19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D19R:G -> D5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D6R:U -> D7R:G: adjacent_5p upward } 0 9 {D7R:G -> D6R:U: adjacent_3p downward } 0 10 {D6R:U -> D18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D18R:A -> D6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D7R:G -> D17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D17R:C -> D7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D7R:G -> D18R:A: outward } 0 15 {D18R:A -> D7R:G: outward } 0 16 {D17R:C -> D18R:A: adjacent_5p upward } 0 17 {D18R:A -> D17R:C: adjacent_3p downward } 0 18 {D18R:A -> D19R:G: adjacent_5p upward } 0 19 {D19R:G -> D18R:A: adjacent_3p downward } 0 20 {D19R:G -> D20R:C: adjacent_5p upward } 0 21 {D20R:C -> D19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 R3R:A 0 1 R4R:C 0 2 R5R:A 0 3 R6R:U 0 4 R18R:A 0 5 R19R:U 0 6 R20R:G 0 7 R21R:U 0 [Edges] 0 {R3R:A -> R4R:C: adjacent_5p upward } 0 1 {R4R:C -> R3R:A: adjacent_3p downward } 0 2 {R3R:A -> R21R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {R21R:U -> R3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {R4R:C -> R5R:A: adjacent_5p upward } 0 5 {R5R:A -> R4R:C: adjacent_3p downward } 0 6 {R4R:C -> R20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R20R:G -> R4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R5R:A -> R6R:U: adjacent_5p upward } 0 9 {R6R:U -> R5R:A: adjacent_3p downward } 0 10 {R5R:A -> R19R:U: pairing antiparallel cis Ww/Ws } 0 11 {R19R:U -> R5R:A: pairing antiparallel cis Ws/Ww } 0 12 {R5R:A -> R20R:G: outward } 0 13 {R20R:G -> R5R:A: outward } 0 14 {R6R:U -> R18R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {R18R:A -> R6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {R18R:A -> R19R:U: adjacent_5p upward } 0 17 {R19R:U -> R18R:A: adjacent_3p downward } 0 18 {R19R:U -> R20R:G: adjacent_5p } 0 19 {R20R:G -> R19R:U: adjacent_3p } 0 20 {R20R:G -> R21R:U: adjacent_5p upward } 0 21 {R21R:U -> R20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 R4R:C 0 1 R5R:A 0 2 R6R:U 0 3 R7R:G 0 4 R17R:C 0 5 R18R:A 0 6 R19R:U 0 7 R20R:G 0 [Edges] 0 {R4R:C -> R5R:A: adjacent_5p upward } 0 1 {R5R:A -> R4R:C: adjacent_3p downward } 0 2 {R4R:C -> R20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R20R:G -> R4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R5R:A -> R6R:U: adjacent_5p upward } 0 5 {R6R:U -> R5R:A: adjacent_3p downward } 0 6 {R5R:A -> R19R:U: pairing antiparallel cis Ww/Ws } 0 7 {R19R:U -> R5R:A: pairing antiparallel cis Ws/Ww } 0 8 {R5R:A -> R20R:G: outward } 0 9 {R20R:G -> R5R:A: outward } 0 10 {R6R:U -> R7R:G: adjacent_5p upward } 0 11 {R7R:G -> R6R:U: adjacent_3p downward } 0 12 {R6R:U -> R18R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {R18R:A -> R6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {R7R:G -> R17R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {R17R:C -> R7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {R7R:G -> R18R:A: outward } 0 17 {R18R:A -> R7R:G: outward } 0 18 {R17R:C -> R18R:A: adjacent_5p } 0 19 {R18R:A -> R17R:C: adjacent_3p } 0 20 {R18R:A -> R19R:U: adjacent_5p upward } 0 21 {R19R:U -> R18R:A: adjacent_3p downward } 0 22 {R19R:U -> R20R:G: adjacent_5p } 0 23 {R20R:G -> R19R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 S3R:A 0 1 S4R:C 0 2 S5R:A 0 3 S6R:U 0 4 S18R:A 0 5 S19R:U 0 6 S20R:G 0 7 S21R:U 0 [Edges] 0 {S3R:A -> S4R:C: adjacent_5p upward } 0 1 {S4R:C -> S3R:A: adjacent_3p downward } 0 2 {S3R:A -> S21R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {S21R:U -> S3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {S4R:C -> S5R:A: adjacent_5p upward } 0 5 {S5R:A -> S4R:C: adjacent_3p downward } 0 6 {S4R:C -> S20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {S20R:G -> S4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {S5R:A -> S6R:U: adjacent_5p upward } 0 9 {S6R:U -> S5R:A: adjacent_3p downward } 0 10 {S5R:A -> S19R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {S19R:U -> S5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {S6R:U -> S18R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {S18R:A -> S6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {S18R:A -> S19R:U: adjacent_5p upward } 0 15 {S19R:U -> S18R:A: adjacent_3p downward } 0 16 {S19R:U -> S20R:G: adjacent_5p } 0 17 {S20R:G -> S19R:U: adjacent_3p } 0 18 {S20R:G -> S21R:U: adjacent_5p } 0 19 {S21R:U -> S20R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 S4R:C 0 1 S5R:A 0 2 S6R:U 0 3 S7R:G 0 4 S17R:C 0 5 S18R:A 0 6 S19R:U 0 7 S20R:G 0 [Edges] 0 {S4R:C -> S5R:A: adjacent_5p upward } 0 1 {S5R:A -> S4R:C: adjacent_3p downward } 0 2 {S4R:C -> S20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {S20R:G -> S4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {S5R:A -> S6R:U: adjacent_5p upward } 0 5 {S6R:U -> S5R:A: adjacent_3p downward } 0 6 {S5R:A -> S19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {S19R:U -> S5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {S6R:U -> S7R:G: adjacent_5p upward } 0 9 {S7R:G -> S6R:U: adjacent_3p downward } 0 10 {S6R:U -> S18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {S18R:A -> S6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {S7R:G -> S17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {S17R:C -> S7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {S7R:G -> S18R:A: outward } 0 15 {S18R:A -> S7R:G: outward } 0 16 {S17R:C -> S18R:A: adjacent_5p } 0 17 {S18R:A -> S17R:C: adjacent_3p } 0 18 {S18R:A -> S19R:U: adjacent_5p upward } 0 19 {S19R:U -> S18R:A: adjacent_3p downward } 0 20 {S19R:U -> S20R:G: adjacent_5p } 0 21 {S20R:G -> S19R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C2R:G 0 1 C3R:C 0 2 C4R:C 0 3 C5R:A 0 4 C19R:U 0 5 C20R:G 0 6 C21R:G 0 7 C22R:C 0 [Edges] 0 {C2R:G -> C3R:C: adjacent_5p upward } 0 1 {C3R:C -> C2R:G: adjacent_3p downward } 0 2 {C2R:G -> C22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C22R:C -> C2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C3R:C -> C4R:C: adjacent_5p } 0 5 {C4R:C -> C3R:C: adjacent_3p } 0 6 {C3R:C -> C21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C21R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:C -> C5R:A: adjacent_5p upward } 0 9 {C5R:A -> C4R:C: adjacent_3p downward } 0 10 {C4R:C -> C20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C20R:G -> C4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C5R:A -> C19R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {C19R:U -> C5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {C5R:A -> C20R:G: outward } 0 15 {C20R:G -> C5R:A: outward } 0 16 {C19R:U -> C20R:G: adjacent_5p upward } 0 17 {C20R:G -> C19R:U: adjacent_3p downward } 0 18 {C20R:G -> C21R:G: adjacent_5p upward } 0 19 {C21R:G -> C20R:G: adjacent_3p downward } 0 20 {C21R:G -> C22R:C: adjacent_5p upward } 0 21 {C22R:C -> C21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C3R:C 0 1 C4R:C 0 2 C5R:A 0 3 C6R:C 0 4 C18R:G 0 5 C19R:U 0 6 C20R:G 0 7 C21R:G 0 [Edges] 0 {C3R:C -> C4R:C: adjacent_5p } 0 1 {C4R:C -> C3R:C: adjacent_3p } 0 2 {C3R:C -> C21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C21R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C4R:C -> C5R:A: adjacent_5p upward } 0 5 {C5R:A -> C4R:C: adjacent_3p downward } 0 6 {C4R:C -> C20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C20R:G -> C4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C5R:A -> C6R:C: adjacent_5p upward } 0 9 {C6R:C -> C5R:A: adjacent_3p downward } 0 10 {C5R:A -> C19R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C19R:U -> C5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C5R:A -> C20R:G: outward } 0 13 {C20R:G -> C5R:A: outward } 0 14 {C6R:C -> C18R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {C18R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {C18R:G -> C19R:U: adjacent_5p upward } 0 17 {C19R:U -> C18R:G: adjacent_3p downward } 0 18 {C19R:U -> C20R:G: adjacent_5p upward } 0 19 {C20R:G -> C19R:U: adjacent_3p downward } 0 20 {C20R:G -> C21R:G: adjacent_5p upward } 0 21 {C21R:G -> C20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C4R:C 0 1 C5R:A 0 2 C6R:C 0 3 C7R:G 0 4 C17R:C 0 5 C18R:G 0 6 C19R:U 0 7 C20R:G 0 [Edges] 0 {C4R:C -> C5R:A: adjacent_5p upward } 0 1 {C5R:A -> C4R:C: adjacent_3p downward } 0 2 {C4R:C -> C20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C20R:G -> C4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C5R:A -> C6R:C: adjacent_5p upward } 0 5 {C6R:C -> C5R:A: adjacent_3p downward } 0 6 {C5R:A -> C19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C19R:U -> C5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C5R:A -> C20R:G: outward } 0 9 {C20R:G -> C5R:A: outward } 0 10 {C6R:C -> C7R:G: adjacent_5p } 0 11 {C7R:G -> C6R:C: adjacent_3p } 0 12 {C6R:C -> C18R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C18R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C7R:G -> C17R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C17R:C -> C7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C7R:G -> C18R:G: outward } 0 17 {C18R:G -> C7R:G: outward } 0 18 {C17R:C -> C18R:G: adjacent_5p } 0 19 {C18R:G -> C17R:C: adjacent_3p } 0 20 {C18R:G -> C19R:U: adjacent_5p upward } 0 21 {C19R:U -> C18R:G: adjacent_3p downward } 0 22 {C19R:U -> C20R:G: adjacent_5p upward } 0 23 {C20R:G -> C19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 C5R:A 0 1 C6R:C 0 2 C7R:G 0 3 C8R:G 0 4 C16R:C 0 5 C17R:C 0 6 C18R:G 0 7 C19R:U 0 [Edges] 0 {C5R:A -> C6R:C: adjacent_5p upward } 0 1 {C6R:C -> C5R:A: adjacent_3p downward } 0 2 {C5R:A -> C19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C19R:U -> C5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C6R:C -> C7R:G: adjacent_5p } 0 5 {C7R:G -> C6R:C: adjacent_3p } 0 6 {C6R:C -> C18R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C18R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C7R:G -> C8R:G: adjacent_5p upward } 0 9 {C8R:G -> C7R:G: adjacent_3p downward } 0 10 {C7R:G -> C17R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C17R:C -> C7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C7R:G -> C18R:G: outward } 0 13 {C18R:G -> C7R:G: outward } 0 14 {C8R:G -> C16R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C16R:C -> C8R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C16R:C -> C17R:C: adjacent_5p upward } 0 17 {C17R:C -> C16R:C: adjacent_3p downward } 0 18 {C17R:C -> C18R:G: adjacent_5p } 0 19 {C18R:G -> C17R:C: adjacent_3p } 0 20 {C18R:G -> C19R:U: adjacent_5p upward } 0 21 {C19R:U -> C18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D2R:G 0 1 D3R:C 0 2 D4R:C 0 3 D5R:A 0 4 D19R:U 0 5 D20R:G 0 6 D21R:G 0 7 D22R:C 0 [Edges] 0 {D2R:G -> D3R:C: adjacent_5p upward } 0 1 {D3R:C -> D2R:G: adjacent_3p downward } 0 2 {D2R:G -> D22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D22R:C -> D2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D3R:C -> D4R:C: adjacent_5p upward } 0 5 {D4R:C -> D3R:C: adjacent_3p downward } 0 6 {D3R:C -> D21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D21R:G -> D3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D4R:C -> D5R:A: adjacent_5p } 0 9 {D5R:A -> D4R:C: adjacent_3p } 0 10 {D4R:C -> D20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D20R:G -> D4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D5R:A -> D19R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {D19R:U -> D5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {D5R:A -> D20R:G: outward } 0 15 {D20R:G -> D5R:A: outward } 0 16 {D19R:U -> D20R:G: adjacent_5p upward } 0 17 {D20R:G -> D19R:U: adjacent_3p downward } 0 18 {D20R:G -> D21R:G: adjacent_5p upward } 0 19 {D21R:G -> D20R:G: adjacent_3p downward } 0 20 {D21R:G -> D22R:C: adjacent_5p upward } 0 21 {D22R:C -> D21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D3R:C 0 1 D4R:C 0 2 D5R:A 0 3 D6R:C 0 4 D18R:G 0 5 D19R:U 0 6 D20R:G 0 7 D21R:G 0 [Edges] 0 {D3R:C -> D4R:C: adjacent_5p upward } 0 1 {D4R:C -> D3R:C: adjacent_3p downward } 0 2 {D3R:C -> D21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D21R:G -> D3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D4R:C -> D5R:A: adjacent_5p } 0 5 {D5R:A -> D4R:C: adjacent_3p } 0 6 {D4R:C -> D20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D20R:G -> D4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D5R:A -> D6R:C: adjacent_5p upward } 0 9 {D6R:C -> D5R:A: adjacent_3p downward } 0 10 {D5R:A -> D19R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D19R:U -> D5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {D5R:A -> D20R:G: outward } 0 13 {D20R:G -> D5R:A: outward } 0 14 {D6R:C -> D18R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D18R:G -> D6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D18R:G -> D19R:U: adjacent_5p upward } 0 17 {D19R:U -> D18R:G: adjacent_3p downward } 0 18 {D19R:U -> D20R:G: adjacent_5p upward } 0 19 {D20R:G -> D19R:U: adjacent_3p downward } 0 20 {D20R:G -> D21R:G: adjacent_5p upward } 0 21 {D21R:G -> D20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D4R:C 0 1 D5R:A 0 2 D6R:C 0 3 D7R:G 0 4 D17R:C 0 5 D18R:G 0 6 D19R:U 0 7 D20R:G 0 [Edges] 0 {D4R:C -> D5R:A: adjacent_5p } 0 1 {D5R:A -> D4R:C: adjacent_3p } 0 2 {D4R:C -> D20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D20R:G -> D4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D5R:A -> D6R:C: adjacent_5p upward } 0 5 {D6R:C -> D5R:A: adjacent_3p downward } 0 6 {D5R:A -> D19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D19R:U -> D5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D5R:A -> D20R:G: outward } 0 9 {D20R:G -> D5R:A: outward } 0 10 {D6R:C -> D7R:G: adjacent_5p } 0 11 {D7R:G -> D6R:C: adjacent_3p } 0 12 {D6R:C -> D18R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D18R:G -> D6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D7R:G -> D17R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D17R:C -> D7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D7R:G -> D18R:G: outward } 0 17 {D18R:G -> D7R:G: outward } 0 18 {D17R:C -> D18R:G: adjacent_5p upward } 0 19 {D18R:G -> D17R:C: adjacent_3p downward } 0 20 {D18R:G -> D19R:U: adjacent_5p upward } 0 21 {D19R:U -> D18R:G: adjacent_3p downward } 0 22 {D19R:U -> D20R:G: adjacent_5p upward } 0 23 {D20R:G -> D19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 D5R:A 0 1 D6R:C 0 2 D7R:G 0 3 D8R:G 0 4 D16R:C 0 5 D17R:C 0 6 D18R:G 0 7 D19R:U 0 [Edges] 0 {D5R:A -> D6R:C: adjacent_5p upward } 0 1 {D6R:C -> D5R:A: adjacent_3p downward } 0 2 {D5R:A -> D19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D19R:U -> D5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {D6R:C -> D7R:G: adjacent_5p } 0 5 {D7R:G -> D6R:C: adjacent_3p } 0 6 {D6R:C -> D18R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D18R:G -> D6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D7R:G -> D8R:G: adjacent_5p upward } 0 9 {D8R:G -> D7R:G: adjacent_3p downward } 0 10 {D7R:G -> D17R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D17R:C -> D7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D7R:G -> D18R:G: outward } 0 13 {D18R:G -> D7R:G: outward } 0 14 {D8R:G -> D16R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D16R:C -> D8R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D16R:C -> D17R:C: adjacent_5p upward } 0 17 {D17R:C -> D16R:C: adjacent_3p downward } 0 18 {D17R:C -> D18R:G: adjacent_5p upward } 0 19 {D18R:G -> D17R:C: adjacent_3p downward } 0 20 {D18R:G -> D19R:U: adjacent_5p upward } 0 21 {D19R:U -> D18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:C 0 2 A5R:U 0 3 A6R:G 0 4 B13R:C 0 5 B14R:U 0 6 B15R:G 0 7 B16R:C 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> B16R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B16R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:U: adjacent_5p } 0 5 {A5R:U -> A4R:C: adjacent_3p } 0 6 {A4R:C -> B15R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B15R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> A6R:G: adjacent_5p upward } 0 9 {A6R:G -> A5R:U: adjacent_3p downward } 0 10 {A6R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B13R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B13R:C -> B14R:U: adjacent_5p upward } 0 13 {B14R:U -> B13R:C: adjacent_3p downward } 0 14 {B14R:U -> B15R:G: adjacent_5p } 0 15 {B15R:G -> B14R:U: adjacent_3p } 0 16 {B15R:G -> B16R:C: adjacent_5p upward } 0 17 {B16R:C -> B15R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:U 0 2 A6R:G 0 3 A7R:C 0 4 B12R:G 0 5 B13R:C 0 6 B14R:U 0 7 B15R:G 0 [Edges] 0 {A4R:C -> A5R:U: adjacent_5p } 0 1 {A5R:U -> A4R:C: adjacent_3p } 0 2 {A4R:C -> B15R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:U: adjacent_3p downward } 0 6 {A6R:G -> A7R:C: adjacent_5p upward } 0 7 {A7R:C -> A6R:G: adjacent_3p downward } 0 8 {A6R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B13R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A7R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B12R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B12R:G -> B13R:C: adjacent_5p upward } 0 13 {B13R:C -> B12R:G: adjacent_3p downward } 0 14 {B13R:C -> B14R:U: adjacent_5p upward } 0 15 {B14R:U -> B13R:C: adjacent_3p downward } 0 16 {B14R:U -> B15R:G: adjacent_5p } 0 17 {B15R:G -> B14R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:C 0 2 A8R:U 0 3 A9R:G 0 4 B10R:C 0 5 B11R:U 0 6 B12R:G 0 7 B13R:C 0 [Edges] 0 {A6R:G -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B13R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:C -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:C: adjacent_3p downward } 0 6 {A7R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:U -> A9R:G: adjacent_5p upward } 0 9 {A9R:G -> A8R:U: adjacent_3p downward } 0 10 {A9R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B10R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B10R:C -> B11R:U: adjacent_5p upward } 0 13 {B11R:U -> B10R:C: adjacent_3p downward } 0 14 {B11R:U -> B12R:G: adjacent_5p upward } 0 15 {B12R:G -> B11R:U: adjacent_3p downward } 0 16 {B12R:G -> B13R:C: adjacent_5p upward } 0 17 {B13R:C -> B12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:U 0 2 A9R:G 0 3 A10R:C 0 4 B9R:G 0 5 B10R:C 0 6 B11R:U 0 7 B12R:G 0 [Edges] 0 {A7R:C -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B12R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:U -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:U: adjacent_3p downward } 0 6 {A9R:G -> A10R:C: adjacent_5p upward } 0 7 {A10R:C -> A9R:G: adjacent_3p downward } 0 8 {A9R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B10R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A10R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B9R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B9R:G -> B10R:C: adjacent_5p upward } 0 13 {B10R:C -> B9R:G: adjacent_3p downward } 0 14 {B10R:C -> B11R:U: adjacent_5p upward } 0 15 {B11R:U -> B10R:C: adjacent_3p downward } 0 16 {B11R:U -> B12R:G: adjacent_5p upward } 0 17 {B12R:G -> B11R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:C 0 2 A11R:U 0 3 A12R:G 0 4 B7R:C 0 5 B8R:U 0 6 B9R:G 0 7 B10R:C 0 [Edges] 0 {A9R:G -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B10R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:C -> A11R:U: adjacent_5p } 0 5 {A11R:U -> A10R:C: adjacent_3p } 0 6 {A10R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B9R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:U -> A12R:G: adjacent_5p upward } 0 9 {A12R:G -> A11R:U: adjacent_3p downward } 0 10 {A11R:U -> B9R:G: outward } 0 11 {B9R:G -> A11R:U: outward } 0 12 {A12R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B7R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B7R:C -> B8R:U: adjacent_5p upward } 0 15 {B8R:U -> B7R:C: adjacent_3p downward } 0 16 {B8R:U -> B9R:G: adjacent_5p upward } 0 17 {B9R:G -> B8R:U: adjacent_3p downward } 0 18 {B9R:G -> B10R:C: adjacent_5p upward } 0 19 {B10R:C -> B9R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . 10 . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 11 . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:C 0 1 A11R:U 0 2 A12R:G 0 3 A13R:C 0 4 B6R:G 0 5 B7R:C 0 6 B8R:U 0 7 B9R:G 0 [Edges] 0 {A10R:C -> A11R:U: adjacent_5p } 0 1 {A11R:U -> A10R:C: adjacent_3p } 0 2 {A10R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B9R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:U -> A12R:G: adjacent_5p upward } 0 5 {A12R:G -> A11R:U: adjacent_3p downward } 0 6 {A11R:U -> B9R:G: outward } 0 7 {B9R:G -> A11R:U: outward } 0 8 {A12R:G -> A13R:C: adjacent_5p upward } 0 9 {A13R:C -> A12R:G: adjacent_3p downward } 0 10 {A12R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B7R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B6R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B6R:G -> B7R:C: adjacent_5p upward } 0 15 {B7R:C -> B6R:G: adjacent_3p downward } 0 16 {B7R:C -> B8R:U: adjacent_5p upward } 0 17 {B8R:U -> B7R:C: adjacent_3p downward } 0 18 {B8R:U -> B9R:G: adjacent_5p upward } 0 19 {B9R:G -> B8R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . 6 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . . . . . 17 . 18 7 3 7 . . . . 19 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:C 0 2 A14R:U 0 3 A15R:G 0 4 B4R:C 0 5 B5R:U 0 6 B6R:G 0 7 B7R:C 0 [Edges] 0 {A12R:G -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B7R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:C -> A14R:U: adjacent_5p upward } 0 5 {A14R:U -> A13R:C: adjacent_3p downward } 0 6 {A13R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B6R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:U -> A15R:G: adjacent_5p upward } 0 9 {A15R:G -> A14R:U: adjacent_3p downward } 0 10 {A15R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B4R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B4R:C -> B5R:U: adjacent_5p upward } 0 13 {B5R:U -> B4R:C: adjacent_3p downward } 0 14 {B5R:U -> B6R:G: adjacent_5p upward } 0 15 {B6R:G -> B5R:U: adjacent_3p downward } 0 16 {B6R:G -> B7R:C: adjacent_5p upward } 0 17 {B7R:C -> B6R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A13R:C 0 1 A14R:U 0 2 A15R:G 0 3 A16R:C 0 4 B3R:G 0 5 B4R:C 0 6 B5R:U 0 7 B6R:G 0 [Edges] 0 {A13R:C -> A14R:U: adjacent_5p upward } 0 1 {A14R:U -> A13R:C: adjacent_3p downward } 0 2 {A13R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B6R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A14R:U -> A15R:G: adjacent_5p upward } 0 5 {A15R:G -> A14R:U: adjacent_3p downward } 0 6 {A15R:G -> A16R:C: adjacent_5p upward } 0 7 {A16R:C -> A15R:G: adjacent_3p downward } 0 8 {A15R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B4R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A16R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B3R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B3R:G -> B4R:C: adjacent_5p upward } 0 13 {B4R:C -> B3R:G: adjacent_3p downward } 0 14 {B4R:C -> B5R:U: adjacent_5p upward } 0 15 {B5R:U -> B4R:C: adjacent_3p downward } 0 16 {B5R:U -> B6R:G: adjacent_5p upward } 0 17 {B6R:G -> B5R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:C 0 2 A10R:A 0 3 A11R:C 0 4 B4R:G 0 5 B5R:U 0 6 B6R:G 0 7 B7R:A 0 [Edges] 0 {A8R:C -> A9R:C: adjacent_5p upward } 0 1 {A9R:C -> A8R:C: adjacent_3p downward } 0 2 {A8R:C -> B7R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 3 {B7R:A -> A8R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 4 {A9R:C -> A10R:A: adjacent_5p upward } 0 5 {A10R:A -> A9R:C: adjacent_3p downward } 0 6 {A9R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B6R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:A -> A11R:C: adjacent_5p upward } 0 9 {A11R:C -> A10R:A: adjacent_3p downward } 0 10 {A10R:A -> B5R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B5R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A10R:A -> B6R:G: outward } 0 13 {B6R:G -> A10R:A: outward } 0 14 {A11R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B4R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B4R:G -> B5R:U: adjacent_5p upward } 0 17 {B5R:U -> B4R:G: adjacent_3p downward } 0 18 {B5R:U -> B6R:G: adjacent_5p } 0 19 {B6R:G -> B5R:U: adjacent_3p } 0 20 {B6R:G -> B7R:A: adjacent_5p upward } 0 21 {B7R:A -> B6R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A9R:C 0 1 A10R:A 0 2 A11R:C 0 3 A12R:C 0 4 B3R:G 0 5 B4R:G 0 6 B5R:U 0 7 B6R:G 0 [Edges] 0 {A9R:C -> A10R:A: adjacent_5p upward } 0 1 {A10R:A -> A9R:C: adjacent_3p downward } 0 2 {A9R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B6R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:A -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:A: adjacent_3p downward } 0 6 {A10R:A -> B5R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B5R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A10R:A -> B6R:G: outward } 0 9 {B6R:G -> A10R:A: outward } 0 10 {A11R:C -> A12R:C: adjacent_5p upward } 0 11 {A12R:C -> A11R:C: adjacent_3p downward } 0 12 {A11R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B4R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A12R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B3R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B3R:G -> B4R:G: adjacent_5p upward } 0 17 {B4R:G -> B3R:G: adjacent_3p downward } 0 18 {B4R:G -> B5R:U: adjacent_5p upward } 0 19 {B5R:U -> B4R:G: adjacent_3p downward } 0 20 {B5R:U -> B6R:G: adjacent_5p } 0 21 {B6R:G -> B5R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C16R:G 0 1 C17R:C 0 2 C18R:A 0 3 C19R:G 0 4 D45R:C 0 5 D46R:U 0 6 D47R:G 0 7 D48R:C 0 [Edges] 0 {C16R:G -> C17R:C: adjacent_5p upward } 0 1 {C17R:C -> C16R:G: adjacent_3p downward } 0 2 {C16R:G -> D48R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D48R:C -> C16R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C17R:C -> C18R:A: adjacent_5p upward } 0 5 {C18R:A -> C17R:C: adjacent_3p downward } 0 6 {C17R:C -> D47R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D47R:G -> C17R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C18R:A -> C19R:G: adjacent_5p upward } 0 9 {C19R:G -> C18R:A: adjacent_3p downward } 0 10 {C18R:A -> D46R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D46R:U -> C18R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C18R:A -> D47R:G: outward } 0 13 {D47R:G -> C18R:A: outward } 0 14 {C19R:G -> D45R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D45R:C -> C19R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D45R:C -> D46R:U: adjacent_5p upward } 0 17 {D46R:U -> D45R:C: adjacent_3p downward } 0 18 {D46R:U -> D47R:G: adjacent_5p } 0 19 {D47R:G -> D46R:U: adjacent_3p } 0 20 {D47R:G -> D48R:C: adjacent_5p upward } 0 21 {D48R:C -> D47R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C17R:C 0 1 C18R:A 0 2 C19R:G 0 3 C20R:A 0 4 D44R:C 0 5 D45R:C 0 6 D46R:U 0 7 D47R:G 0 [Edges] 0 {C17R:C -> C18R:A: adjacent_5p upward } 0 1 {C18R:A -> C17R:C: adjacent_3p downward } 0 2 {C17R:C -> D47R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D47R:G -> C17R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C18R:A -> C19R:G: adjacent_5p upward } 0 5 {C19R:G -> C18R:A: adjacent_3p downward } 0 6 {C18R:A -> D46R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D46R:U -> C18R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C18R:A -> D47R:G: outward } 0 9 {D47R:G -> C18R:A: outward } 0 10 {C19R:G -> C20R:A: adjacent_5p upward } 0 11 {C20R:A -> C19R:G: adjacent_3p downward } 0 12 {C19R:G -> D45R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D45R:C -> C19R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C20R:A -> D44R:C: pairing antiparallel cis 71 Ww/Ww } 0 15 {D44R:C -> C20R:A: pairing antiparallel cis 71 Ww/Ww } 0 16 {D44R:C -> D45R:C: adjacent_5p upward } 0 17 {D45R:C -> D44R:C: adjacent_3p downward } 0 18 {D45R:C -> D46R:U: adjacent_5p upward } 0 19 {D46R:U -> D45R:C: adjacent_3p downward } 0 20 {D46R:U -> D47R:G: adjacent_5p } 0 21 {D47R:G -> D46R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C18R:A 0 1 C19R:G 0 2 C20R:A 0 3 C21R:G 0 4 D43R:A 0 5 D44R:C 0 6 D45R:C 0 7 D46R:U 0 [Edges] 0 {C18R:A -> C19R:G: adjacent_5p upward } 0 1 {C19R:G -> C18R:A: adjacent_3p downward } 0 2 {C18R:A -> D46R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D46R:U -> C18R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C19R:G -> C20R:A: adjacent_5p upward } 0 5 {C20R:A -> C19R:G: adjacent_3p downward } 0 6 {C19R:G -> D45R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D45R:C -> C19R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C20R:A -> C21R:G: adjacent_5p upward } 0 9 {C21R:G -> C20R:A: adjacent_3p downward } 0 10 {C20R:A -> D44R:C: pairing antiparallel cis 71 Ww/Ww } 0 11 {D44R:C -> C20R:A: pairing antiparallel cis 71 Ww/Ww } 0 12 {C21R:G -> D43R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {D43R:A -> C21R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {D43R:A -> D44R:C: adjacent_5p upward } 0 15 {D44R:C -> D43R:A: adjacent_3p downward } 0 16 {D44R:C -> D45R:C: adjacent_5p upward } 0 17 {D45R:C -> D44R:C: adjacent_3p downward } 0 18 {D45R:C -> D46R:U: adjacent_5p upward } 0 19 {D46R:U -> D45R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C26R:A 0 1 C27R:C 0 2 C28R:A 0 3 C29R:C 0 4 D33R:G 0 5 D34R:U 0 6 D35R:G 0 7 D36R:G 0 [Edges] 0 {C26R:A -> C27R:C: adjacent_5p upward } 0 1 {C27R:C -> C26R:A: adjacent_3p downward } 0 2 {C26R:A -> D36R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {D36R:G -> C26R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {C27R:C -> C28R:A: adjacent_5p upward } 0 5 {C28R:A -> C27R:C: adjacent_3p downward } 0 6 {C27R:C -> D35R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D35R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C28R:A -> C29R:C: adjacent_5p upward } 0 9 {C29R:C -> C28R:A: adjacent_3p downward } 0 10 {C28R:A -> D34R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D34R:U -> C28R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C28R:A -> D35R:G: outward } 0 13 {D35R:G -> C28R:A: outward } 0 14 {C29R:C -> D33R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D33R:G -> C29R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D33R:G -> D34R:U: adjacent_5p upward } 0 17 {D34R:U -> D33R:G: adjacent_3p downward } 0 18 {D34R:U -> D35R:G: adjacent_5p upward } 0 19 {D35R:G -> D34R:U: adjacent_3p downward } 0 20 {D35R:G -> D36R:G: adjacent_5p upward } 0 21 {D36R:G -> D35R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C27R:C 0 1 C28R:A 0 2 C29R:C 0 3 C30R:G 0 4 D32R:C 0 5 D33R:G 0 6 D34R:U 0 7 D35R:G 0 [Edges] 0 {C27R:C -> C28R:A: adjacent_5p upward } 0 1 {C28R:A -> C27R:C: adjacent_3p downward } 0 2 {C27R:C -> D35R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D35R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C28R:A -> C29R:C: adjacent_5p upward } 0 5 {C29R:C -> C28R:A: adjacent_3p downward } 0 6 {C28R:A -> D34R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D34R:U -> C28R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C28R:A -> D35R:G: outward } 0 9 {D35R:G -> C28R:A: outward } 0 10 {C29R:C -> C30R:G: adjacent_5p upward } 0 11 {C30R:G -> C29R:C: adjacent_3p downward } 0 12 {C29R:C -> D33R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D33R:G -> C29R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C30R:G -> D32R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D32R:C -> C30R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C30R:G -> D33R:G: outward } 0 17 {D33R:G -> C30R:G: outward } 0 18 {D32R:C -> D33R:G: adjacent_5p } 0 19 {D33R:G -> D32R:C: adjacent_3p } 0 20 {D33R:G -> D34R:U: adjacent_5p upward } 0 21 {D34R:U -> D33R:G: adjacent_3p downward } 0 22 {D34R:U -> D35R:G: adjacent_5p upward } 0 23 {D35R:G -> D34R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:G 0 2 4R:C 0 3 5R:G 0 4 8R:A 0 5 9R:G 0 6 10R:C 0 7 11R:C 0 [Edges] 0 {2R:G -> 3R:G: adjacent_5p upward } 0 1 {3R:G -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 11R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {11R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:G -> 4R:C: adjacent_5p upward } 0 5 {4R:C -> 3R:G: adjacent_3p downward } 0 6 {3R:G -> 10R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {10R:C -> 3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:C -> 5R:G: adjacent_5p upward } 0 9 {5R:G -> 4R:C: adjacent_3p downward } 0 10 {4R:C -> 9R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {9R:G -> 4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {5R:G -> 8R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {8R:A -> 5R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {8R:A -> 9R:G: adjacent_5p } 0 15 {9R:G -> 8R:A: adjacent_3p } 0 16 {9R:G -> 10R:C: adjacent_5p upward } 0 17 {10R:C -> 9R:G: adjacent_3p downward } 0 18 {10R:C -> 11R:C: adjacent_5p upward } 0 19 {11R:C -> 10R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 2R:G 0 1 3R:G 0 2 4R:C 0 3 5R:G 0 4 8R:A 0 5 9R:G 0 6 10R:C 0 7 11R:C 0 [Edges] 0 {2R:G -> 3R:G: adjacent_5p upward } 0 1 {3R:G -> 2R:G: adjacent_3p downward } 0 2 {2R:G -> 11R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {11R:C -> 2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:G -> 4R:C: adjacent_5p upward } 0 5 {4R:C -> 3R:G: adjacent_3p downward } 0 6 {3R:G -> 10R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {10R:C -> 3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:C -> 5R:G: adjacent_5p upward } 0 9 {5R:G -> 4R:C: adjacent_3p downward } 0 10 {4R:C -> 9R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {9R:G -> 4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {5R:G -> 8R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {8R:A -> 5R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {8R:A -> 9R:G: adjacent_5p upward } 0 15 {9R:G -> 8R:A: adjacent_3p downward } 0 16 {9R:G -> 10R:C: adjacent_5p upward } 0 17 {10R:C -> 9R:G: adjacent_3p downward } 0 18 {10R:C -> 11R:C: adjacent_5p upward } 0 19 {11R:C -> 10R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B903R:G 0 1 B904R:G 0 2 B905R:G 0 3 B906R:U 0 4 B967R:A 0 5 B968R:C 0 6 B969R:C 0 7 B970R:C 0 [Edges] 0 {B903R:G -> B904R:G: adjacent_5p upward } 0 1 {B904R:G -> B903R:G: adjacent_3p downward } 0 2 {B903R:G -> B970R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B970R:C -> B903R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B904R:G -> B905R:G: adjacent_5p upward } 0 5 {B905R:G -> B904R:G: adjacent_3p downward } 0 6 {B904R:G -> B969R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B969R:C -> B904R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B905R:G -> B906R:U: adjacent_5p upward } 0 9 {B906R:U -> B905R:G: adjacent_3p downward } 0 10 {B905R:G -> B968R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B968R:C -> B905R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B906R:U -> B967R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B967R:A -> B906R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B967R:A -> B968R:C: adjacent_5p upward } 0 15 {B968R:C -> B967R:A: adjacent_3p downward } 0 16 {B968R:C -> B969R:C: adjacent_5p } 0 17 {B969R:C -> B968R:C: adjacent_3p } 0 18 {B969R:C -> B970R:C: adjacent_5p upward } 0 19 {B970R:C -> B969R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B904R:G 0 1 B905R:G 0 2 B906R:U 0 3 B907R:A 0 4 B966R:U 0 5 B967R:A 0 6 B968R:C 0 7 B969R:C 0 [Edges] 0 {B904R:G -> B905R:G: adjacent_5p upward } 0 1 {B905R:G -> B904R:G: adjacent_3p downward } 0 2 {B904R:G -> B969R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B969R:C -> B904R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B905R:G -> B906R:U: adjacent_5p upward } 0 5 {B906R:U -> B905R:G: adjacent_3p downward } 0 6 {B905R:G -> B968R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B968R:C -> B905R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B906R:U -> B907R:A: adjacent_5p upward } 0 9 {B907R:A -> B906R:U: adjacent_3p downward } 0 10 {B906R:U -> B967R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B967R:A -> B906R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B907R:A -> B966R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B966R:U -> B907R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B907R:A -> B967R:A: outward } 0 15 {B967R:A -> B907R:A: outward } 0 16 {B966R:U -> B967R:A: adjacent_5p } 0 17 {B967R:A -> B966R:U: adjacent_3p } 0 18 {B967R:A -> B968R:C: adjacent_5p upward } 0 19 {B968R:C -> B967R:A: adjacent_3p downward } 0 20 {B968R:C -> B969R:C: adjacent_5p } 0 21 {B969R:C -> B968R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B910R:G 0 1 B911R:C 0 2 B912R:C 0 3 B913R:A 0 4 B922R:A 0 5 B923R:G 0 6 B924R:G 0 7 B925R:C 0 [Edges] 0 {B910R:G -> B911R:C: adjacent_5p upward } 0 1 {B911R:C -> B910R:G: adjacent_3p downward } 0 2 {B910R:G -> B925R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B925R:C -> B910R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B911R:C -> B912R:C: adjacent_5p upward } 0 5 {B912R:C -> B911R:C: adjacent_3p downward } 0 6 {B911R:C -> B924R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B924R:G -> B911R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B912R:C -> B913R:A: adjacent_5p upward } 0 9 {B913R:A -> B912R:C: adjacent_3p downward } 0 10 {B912R:C -> B923R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B923R:G -> B912R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B913R:A -> B922R:A: pairing antiparallel trans 41 Ss/Hh } 0 13 {B922R:A -> B913R:A: pairing antiparallel trans 41 Hh/Ss } 0 14 {B922R:A -> B923R:G: adjacent_5p upward } 0 15 {B923R:G -> B922R:A: adjacent_3p downward } 0 16 {B923R:G -> B924R:G: adjacent_5p upward } 0 17 {B924R:G -> B923R:G: adjacent_3p downward } 0 18 {B924R:G -> B925R:C: adjacent_5p upward } 0 19 {B925R:C -> B924R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B927R:C 0 1 B928R:C 0 2 B929R:G 0 3 B930R:G 0 4 B940R:C 0 5 B941R:C 0 6 B942R:G 0 7 B943R:G 0 [Edges] 0 {B927R:C -> B928R:C: adjacent_5p upward } 0 1 {B928R:C -> B927R:C: adjacent_3p downward } 0 2 {B927R:C -> B943R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B943R:G -> B927R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B928R:C -> B929R:G: adjacent_5p upward } 0 5 {B929R:G -> B928R:C: adjacent_3p downward } 0 6 {B928R:C -> B942R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B942R:G -> B928R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B929R:G -> B930R:G: adjacent_5p upward } 0 9 {B930R:G -> B929R:G: adjacent_3p downward } 0 10 {B929R:G -> B941R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B941R:C -> B929R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B929R:G -> B942R:G: outward } 0 13 {B942R:G -> B929R:G: outward } 0 14 {B930R:G -> B940R:C: pairing antiparallel cis 130 Ww/Ws } 0 15 {B940R:C -> B930R:G: pairing antiparallel cis 130 Ws/Ww } 0 16 {B940R:C -> B941R:C: adjacent_5p } 0 17 {B941R:C -> B940R:C: adjacent_3p } 0 18 {B941R:C -> B942R:G: adjacent_5p upward } 0 19 {B942R:G -> B941R:C: adjacent_3p downward } 0 20 {B942R:G -> B943R:G: adjacent_5p upward } 0 21 {B943R:G -> B942R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B928R:C 0 1 B929R:G 0 2 B930R:G 0 3 B931R:A 0 4 B939R:U 0 5 B940R:C 0 6 B941R:C 0 7 B942R:G 0 [Edges] 0 {B928R:C -> B929R:G: adjacent_5p upward } 0 1 {B929R:G -> B928R:C: adjacent_3p downward } 0 2 {B928R:C -> B942R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B942R:G -> B928R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B929R:G -> B930R:G: adjacent_5p upward } 0 5 {B930R:G -> B929R:G: adjacent_3p downward } 0 6 {B929R:G -> B941R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B941R:C -> B929R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B929R:G -> B942R:G: outward } 0 9 {B942R:G -> B929R:G: outward } 0 10 {B930R:G -> B931R:A: adjacent_5p upward } 0 11 {B931R:A -> B930R:G: adjacent_3p downward } 0 12 {B930R:G -> B940R:C: pairing antiparallel cis 130 Ww/Ws } 0 13 {B940R:C -> B930R:G: pairing antiparallel cis 130 Ws/Ww } 0 14 {B931R:A -> B939R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B939R:U -> B931R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B939R:U -> B940R:C: adjacent_5p upward } 0 17 {B940R:C -> B939R:U: adjacent_3p downward } 0 18 {B940R:C -> B941R:C: adjacent_5p } 0 19 {B941R:C -> B940R:C: adjacent_3p } 0 20 {B941R:C -> B942R:G: adjacent_5p upward } 0 21 {B942R:G -> B941R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B929R:G 0 1 B930R:G 0 2 B931R:A 0 3 B932R:U 0 4 B938R:U 0 5 B939R:U 0 6 B940R:C 0 7 B941R:C 0 [Edges] 0 {B929R:G -> B930R:G: adjacent_5p upward } 0 1 {B930R:G -> B929R:G: adjacent_3p downward } 0 2 {B929R:G -> B941R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B941R:C -> B929R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B930R:G -> B931R:A: adjacent_5p upward } 0 5 {B931R:A -> B930R:G: adjacent_3p downward } 0 6 {B930R:G -> B940R:C: pairing antiparallel cis 130 Ww/Ws } 0 7 {B940R:C -> B930R:G: pairing antiparallel cis 130 Ws/Ww } 0 8 {B931R:A -> B932R:U: adjacent_5p upward } 0 9 {B932R:U -> B931R:A: adjacent_3p downward } 0 10 {B931R:A -> B939R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B939R:U -> B931R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B932R:U -> B938R:U: pairing antiparallel cis one_hbond Ww/Wh } 0 13 {B938R:U -> B932R:U: pairing antiparallel cis one_hbond Wh/Ww } 0 14 {B938R:U -> B939R:U: adjacent_5p upward } 0 15 {B939R:U -> B938R:U: adjacent_3p downward } 0 16 {B939R:U -> B940R:C: adjacent_5p upward } 0 17 {B940R:C -> B939R:U: adjacent_3p downward } 0 18 {B940R:C -> B941R:C: adjacent_5p } 0 19 {B941R:C -> B940R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B930R:G 0 1 B931R:A 0 2 B932R:U 0 3 B933R:U 0 4 B937R:A 0 5 B938R:U 0 6 B939R:U 0 7 B940R:C 0 [Edges] 0 {B930R:G -> B931R:A: adjacent_5p upward } 0 1 {B931R:A -> B930R:G: adjacent_3p downward } 0 2 {B930R:G -> B940R:C: pairing antiparallel cis 130 Ww/Ws } 0 3 {B940R:C -> B930R:G: pairing antiparallel cis 130 Ws/Ww } 0 4 {B931R:A -> B932R:U: adjacent_5p upward } 0 5 {B932R:U -> B931R:A: adjacent_3p downward } 0 6 {B931R:A -> B939R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B939R:U -> B931R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B932R:U -> B933R:U: adjacent_5p upward } 0 9 {B933R:U -> B932R:U: adjacent_3p downward } 0 10 {B932R:U -> B938R:U: pairing antiparallel cis one_hbond Ww/Wh } 0 11 {B938R:U -> B932R:U: pairing antiparallel cis one_hbond Wh/Ww } 0 12 {B933R:U -> B937R:A: pairing antiparallel trans one_hbond 45 Ss/Hw } 0 13 {B937R:A -> B933R:U: pairing antiparallel trans one_hbond 45 Hw/Ss } 0 14 {B937R:A -> B938R:U: adjacent_5p upward } 0 15 {B938R:U -> B937R:A: adjacent_3p downward } 0 16 {B938R:U -> B939R:U: adjacent_5p upward } 0 17 {B939R:U -> B938R:U: adjacent_3p downward } 0 18 {B939R:U -> B940R:C: adjacent_5p upward } 0 19 {B940R:C -> B939R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B949R:C 0 1 B950R:G 0 2 B951R:A 0 3 B952R:G 0 4 B962R:C 0 5 B963R:U 0 6 B964R:C 0 7 B965R:G 0 [Edges] 0 {B949R:C -> B950R:G: adjacent_5p } 0 1 {B950R:G -> B949R:C: adjacent_3p } 0 2 {B949R:C -> B965R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B965R:G -> B949R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B950R:G -> B951R:A: adjacent_5p upward } 0 5 {B951R:A -> B950R:G: adjacent_3p downward } 0 6 {B950R:G -> B964R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B964R:C -> B950R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B950R:G -> B965R:G: outward } 0 9 {B965R:G -> B950R:G: outward } 0 10 {B951R:A -> B952R:G: adjacent_5p upward } 0 11 {B952R:G -> B951R:A: adjacent_3p downward } 0 12 {B951R:A -> B963R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B963R:U -> B951R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B952R:G -> B962R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B962R:C -> B952R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B962R:C -> B963R:U: adjacent_5p } 0 17 {B963R:U -> B962R:C: adjacent_3p } 0 18 {B963R:U -> B964R:C: adjacent_5p upward } 0 19 {B964R:C -> B963R:U: adjacent_3p downward } 0 20 {B964R:C -> B965R:G: adjacent_5p upward } 0 21 {B965R:G -> B964R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B950R:G 0 1 B951R:A 0 2 B952R:G 0 3 B953R:G 0 4 B961R:C 0 5 B962R:C 0 6 B963R:U 0 7 B964R:C 0 [Edges] 0 {B950R:G -> B951R:A: adjacent_5p upward } 0 1 {B951R:A -> B950R:G: adjacent_3p downward } 0 2 {B950R:G -> B964R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B964R:C -> B950R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B951R:A -> B952R:G: adjacent_5p upward } 0 5 {B952R:G -> B951R:A: adjacent_3p downward } 0 6 {B951R:A -> B963R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B963R:U -> B951R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B952R:G -> B953R:G: adjacent_5p upward } 0 9 {B953R:G -> B952R:G: adjacent_3p downward } 0 10 {B952R:G -> B962R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B962R:C -> B952R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B953R:G -> B961R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B961R:C -> B953R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B961R:C -> B962R:C: adjacent_5p } 0 15 {B962R:C -> B961R:C: adjacent_3p } 0 16 {B962R:C -> B963R:U: adjacent_5p } 0 17 {B963R:U -> B962R:C: adjacent_3p } 0 18 {B963R:U -> B964R:C: adjacent_5p upward } 0 19 {B964R:C -> B963R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B402R:G 0 1 B403R:C 0 2 B404R:A 0 3 B405R:A 0 4 B419R:U 0 5 B420R:U 0 6 B421R:G 0 7 B422R:C 0 [Edges] 0 {B402R:G -> B403R:C: adjacent_5p upward } 0 1 {B403R:C -> B402R:G: adjacent_3p downward } 0 2 {B402R:G -> B422R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B422R:C -> B402R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B403R:C -> B404R:A: adjacent_5p upward } 0 5 {B404R:A -> B403R:C: adjacent_3p downward } 0 6 {B403R:C -> B421R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B421R:G -> B403R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B404R:A -> B405R:A: adjacent_5p upward } 0 9 {B405R:A -> B404R:A: adjacent_3p downward } 0 10 {B404R:A -> B420R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B420R:U -> B404R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B404R:A -> B421R:G: outward } 0 13 {B421R:G -> B404R:A: outward } 0 14 {B405R:A -> B419R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B419R:U -> B405R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B419R:U -> B420R:U: adjacent_5p upward } 0 17 {B420R:U -> B419R:U: adjacent_3p downward } 0 18 {B420R:U -> B421R:G: adjacent_5p } 0 19 {B421R:G -> B420R:U: adjacent_3p } 0 20 {B421R:G -> B422R:C: adjacent_5p upward } 0 21 {B422R:C -> B421R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B403R:C 0 1 B404R:A 0 2 B405R:A 0 3 B406R:C 0 4 B418R:G 0 5 B419R:U 0 6 B420R:U 0 7 B421R:G 0 [Edges] 0 {B403R:C -> B404R:A: adjacent_5p upward } 0 1 {B404R:A -> B403R:C: adjacent_3p downward } 0 2 {B403R:C -> B421R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B421R:G -> B403R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B404R:A -> B405R:A: adjacent_5p upward } 0 5 {B405R:A -> B404R:A: adjacent_3p downward } 0 6 {B404R:A -> B420R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B420R:U -> B404R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B404R:A -> B421R:G: outward } 0 9 {B421R:G -> B404R:A: outward } 0 10 {B405R:A -> B406R:C: adjacent_5p upward } 0 11 {B406R:C -> B405R:A: adjacent_3p downward } 0 12 {B405R:A -> B419R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B419R:U -> B405R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B406R:C -> B418R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B418R:G -> B406R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B418R:G -> B419R:U: adjacent_5p upward } 0 17 {B419R:U -> B418R:G: adjacent_3p downward } 0 18 {B419R:U -> B420R:U: adjacent_5p upward } 0 19 {B420R:U -> B419R:U: adjacent_3p downward } 0 20 {B420R:U -> B421R:G: adjacent_5p } 0 21 {B421R:G -> B420R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B404R:A 0 1 B405R:A 0 2 B406R:C 0 3 B407R:G 0 4 B417R:C 0 5 B418R:G 0 6 B419R:U 0 7 B420R:U 0 [Edges] 0 {B404R:A -> B405R:A: adjacent_5p upward } 0 1 {B405R:A -> B404R:A: adjacent_3p downward } 0 2 {B404R:A -> B420R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B420R:U -> B404R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B405R:A -> B406R:C: adjacent_5p upward } 0 5 {B406R:C -> B405R:A: adjacent_3p downward } 0 6 {B405R:A -> B419R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B419R:U -> B405R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B406R:C -> B407R:G: adjacent_5p } 0 9 {B407R:G -> B406R:C: adjacent_3p } 0 10 {B406R:C -> B418R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B418R:G -> B406R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B407R:G -> B417R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B417R:C -> B407R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B407R:G -> B418R:G: outward } 0 15 {B418R:G -> B407R:G: outward } 0 16 {B417R:C -> B418R:G: adjacent_5p upward } 0 17 {B418R:G -> B417R:C: adjacent_3p downward } 0 18 {B418R:G -> B419R:U: adjacent_5p upward } 0 19 {B419R:U -> B418R:G: adjacent_3p downward } 0 20 {B419R:U -> B420R:U: adjacent_5p upward } 0 21 {B420R:U -> B419R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B405R:A 0 1 B406R:C 0 2 B407R:G 0 3 B408R:G 0 4 B416R:C 0 5 B417R:C 0 6 B418R:G 0 7 B419R:U 0 [Edges] 0 {B405R:A -> B406R:C: adjacent_5p upward } 0 1 {B406R:C -> B405R:A: adjacent_3p downward } 0 2 {B405R:A -> B419R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B419R:U -> B405R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B406R:C -> B407R:G: adjacent_5p } 0 5 {B407R:G -> B406R:C: adjacent_3p } 0 6 {B406R:C -> B418R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B418R:G -> B406R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B407R:G -> B408R:G: adjacent_5p upward } 0 9 {B408R:G -> B407R:G: adjacent_3p downward } 0 10 {B407R:G -> B417R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B417R:C -> B407R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B407R:G -> B418R:G: outward } 0 13 {B418R:G -> B407R:G: outward } 0 14 {B408R:G -> B416R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B416R:C -> B408R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B416R:C -> B417R:C: adjacent_5p } 0 17 {B417R:C -> B416R:C: adjacent_3p } 0 18 {B417R:C -> B418R:G: adjacent_5p upward } 0 19 {B418R:G -> B417R:C: adjacent_3p downward } 0 20 {B418R:G -> B419R:U: adjacent_5p upward } 0 21 {B419R:U -> B418R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:G 0 3 A6R:U 0 4 B29R:A 0 5 B30R:C 0 6 B31R:C 0 7 B32R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> B32R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B32R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B31R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B31R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> B32R:A: outward } 0 9 {B32R:A -> A4R:G: outward } 0 10 {A5R:G -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:G: adjacent_3p downward } 0 12 {A5R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B30R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:U -> B29R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B29R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B29R:A -> B30R:C: adjacent_5p upward } 0 17 {B30R:C -> B29R:A: adjacent_3p downward } 0 18 {B30R:C -> B31R:C: adjacent_5p upward } 0 19 {B31R:C -> B30R:C: adjacent_3p downward } 0 20 {B31R:C -> B32R:A: adjacent_5p upward } 0 21 {B32R:A -> B31R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:G 0 2 A6R:U 0 3 A7R:G 0 4 B28R:C 0 5 B29R:A 0 6 B30R:C 0 7 B31R:C 0 [Edges] 0 {A4R:G -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B31R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:G -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B30R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:U -> A7R:G: adjacent_5p } 0 9 {A7R:G -> A6R:U: adjacent_3p } 0 10 {A6R:U -> B29R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B29R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:G -> B28R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B28R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:G -> B29R:A: outward } 0 15 {B29R:A -> A7R:G: outward } 0 16 {B28R:C -> B29R:A: adjacent_5p upward } 0 17 {B29R:A -> B28R:C: adjacent_3p downward } 0 18 {B29R:A -> B30R:C: adjacent_5p upward } 0 19 {B30R:C -> B29R:A: adjacent_3p downward } 0 20 {B30R:C -> B31R:C: adjacent_5p upward } 0 21 {B31R:C -> B30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:U 0 2 A12R:C 0 3 A13R:G 0 4 B23R:C 0 5 B24R:G 0 6 B25R:U 0 7 B26R:C 0 [Edges] 0 {A10R:G -> A11R:U: adjacent_5p upward } 0 1 {A11R:U -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> B26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B26R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:U -> A12R:C: adjacent_5p upward } 0 5 {A12R:C -> A11R:U: adjacent_3p downward } 0 6 {A11R:U -> B25R:U: pairing antiparallel cis XVI Ws/Ww } 0 7 {B25R:U -> A11R:U: pairing antiparallel cis XVI Ww/Ws } 0 8 {A12R:C -> A13R:G: adjacent_5p upward } 0 9 {A13R:G -> A12R:C: adjacent_3p downward } 0 10 {A12R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B24R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B23R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A13R:G -> B24R:G: outward } 0 15 {B24R:G -> A13R:G: outward } 0 16 {B23R:C -> B24R:G: adjacent_5p upward } 0 17 {B24R:G -> B23R:C: adjacent_3p downward } 0 18 {B24R:G -> B25R:U: adjacent_5p upward } 0 19 {B25R:U -> B24R:G: adjacent_3p downward } 0 20 {B25R:U -> B26R:C: adjacent_5p upward } 0 21 {B26R:C -> B25R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:C 0 2 A13R:G 0 3 A14R:C 0 4 B22R:G 0 5 B23R:C 0 6 B24R:G 0 7 B25R:U 0 [Edges] 0 {A11R:U -> A12R:C: adjacent_5p upward } 0 1 {A12R:C -> A11R:U: adjacent_3p downward } 0 2 {A11R:U -> B25R:U: pairing antiparallel cis XVI Ws/Ww } 0 3 {B25R:U -> A11R:U: pairing antiparallel cis XVI Ww/Ws } 0 4 {A12R:C -> A13R:G: adjacent_5p upward } 0 5 {A13R:G -> A12R:C: adjacent_3p downward } 0 6 {A12R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B24R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:G -> A14R:C: adjacent_5p upward } 0 9 {A14R:C -> A13R:G: adjacent_3p downward } 0 10 {A13R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B23R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:G -> B24R:G: outward } 0 13 {B24R:G -> A13R:G: outward } 0 14 {A14R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B22R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B22R:G -> B23R:C: adjacent_5p upward } 0 17 {B23R:C -> B22R:G: adjacent_3p downward } 0 18 {B23R:C -> B24R:G: adjacent_5p upward } 0 19 {B24R:G -> B23R:C: adjacent_3p downward } 0 20 {B24R:G -> B25R:U: adjacent_5p upward } 0 21 {B25R:U -> B24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C3R:U 0 1 C4R:G 0 2 C5R:G 0 3 C6R:U 0 4 D29R:A 0 5 D30R:C 0 6 D31R:C 0 7 D32R:A 0 [Edges] 0 {C3R:U -> C4R:G: adjacent_5p upward } 0 1 {C4R:G -> C3R:U: adjacent_3p downward } 0 2 {C3R:U -> D32R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D32R:A -> C3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C4R:G -> C5R:G: adjacent_5p upward } 0 5 {C5R:G -> C4R:G: adjacent_3p downward } 0 6 {C4R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D31R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:G -> D32R:A: outward } 0 9 {D32R:A -> C4R:G: outward } 0 10 {C5R:G -> C6R:U: adjacent_5p upward } 0 11 {C6R:U -> C5R:G: adjacent_3p downward } 0 12 {C5R:G -> D30R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D30R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C6R:U -> D29R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {D29R:A -> C6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {D29R:A -> D30R:C: adjacent_5p upward } 0 17 {D30R:C -> D29R:A: adjacent_3p downward } 0 18 {D30R:C -> D31R:C: adjacent_5p upward } 0 19 {D31R:C -> D30R:C: adjacent_3p downward } 0 20 {D31R:C -> D32R:A: adjacent_5p } 0 21 {D32R:A -> D31R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C4R:G 0 1 C5R:G 0 2 C6R:U 0 3 C7R:G 0 4 D28R:C 0 5 D29R:A 0 6 D30R:C 0 7 D31R:C 0 [Edges] 0 {C4R:G -> C5R:G: adjacent_5p upward } 0 1 {C5R:G -> C4R:G: adjacent_3p downward } 0 2 {C4R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D31R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C5R:G -> C6R:U: adjacent_5p upward } 0 5 {C6R:U -> C5R:G: adjacent_3p downward } 0 6 {C5R:G -> D30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D30R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C6R:U -> C7R:G: adjacent_5p upward } 0 9 {C7R:G -> C6R:U: adjacent_3p downward } 0 10 {C6R:U -> D29R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D29R:A -> C6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C7R:G -> D28R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D28R:C -> C7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C7R:G -> D29R:A: outward } 0 15 {D29R:A -> C7R:G: outward } 0 16 {D28R:C -> D29R:A: adjacent_5p } 0 17 {D29R:A -> D28R:C: adjacent_3p } 0 18 {D29R:A -> D30R:C: adjacent_5p upward } 0 19 {D30R:C -> D29R:A: adjacent_3p downward } 0 20 {D30R:C -> D31R:C: adjacent_5p upward } 0 21 {D31R:C -> D30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C10R:G 0 1 C11R:U 0 2 C12R:C 0 3 C13R:G 0 4 D23R:C 0 5 D24R:G 0 6 D25R:U 0 7 D26R:C 0 [Edges] 0 {C10R:G -> C11R:U: adjacent_5p upward } 0 1 {C11R:U -> C10R:G: adjacent_3p downward } 0 2 {C10R:G -> D26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D26R:C -> C10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C11R:U -> C12R:C: adjacent_5p upward } 0 5 {C12R:C -> C11R:U: adjacent_3p downward } 0 6 {C11R:U -> D25R:U: pairing antiparallel cis XVI Ws/Ww } 0 7 {D25R:U -> C11R:U: pairing antiparallel cis XVI Ww/Ws } 0 8 {C12R:C -> C13R:G: adjacent_5p } 0 9 {C13R:G -> C12R:C: adjacent_3p } 0 10 {C12R:C -> D24R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D24R:G -> C12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C13R:G -> D23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D23R:C -> C13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C13R:G -> D24R:G: outward } 0 15 {D24R:G -> C13R:G: outward } 0 16 {D23R:C -> D24R:G: adjacent_5p upward } 0 17 {D24R:G -> D23R:C: adjacent_3p downward } 0 18 {D24R:G -> D25R:U: adjacent_5p upward } 0 19 {D25R:U -> D24R:G: adjacent_3p downward } 0 20 {D25R:U -> D26R:C: adjacent_5p upward } 0 21 {D26R:C -> D25R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C11R:U 0 1 C12R:C 0 2 C13R:G 0 3 C14R:C 0 4 D22R:G 0 5 D23R:C 0 6 D24R:G 0 7 D25R:U 0 [Edges] 0 {C11R:U -> C12R:C: adjacent_5p upward } 0 1 {C12R:C -> C11R:U: adjacent_3p downward } 0 2 {C11R:U -> D25R:U: pairing antiparallel cis XVI Ws/Ww } 0 3 {D25R:U -> C11R:U: pairing antiparallel cis XVI Ww/Ws } 0 4 {C12R:C -> C13R:G: adjacent_5p } 0 5 {C13R:G -> C12R:C: adjacent_3p } 0 6 {C12R:C -> D24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D24R:G -> C12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C13R:G -> C14R:C: adjacent_5p upward } 0 9 {C14R:C -> C13R:G: adjacent_3p downward } 0 10 {C13R:G -> D23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D23R:C -> C13R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C13R:G -> D24R:G: outward } 0 13 {D24R:G -> C13R:G: outward } 0 14 {C14R:C -> D22R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 15 {D22R:G -> C14R:C: pairing antiparallel cis one_hbond Ws/Ws } 0 16 {D22R:G -> D23R:C: adjacent_5p upward } 0 17 {D23R:C -> D22R:G: adjacent_3p downward } 0 18 {D23R:C -> D24R:G: adjacent_5p upward } 0 19 {D24R:G -> D23R:C: adjacent_3p downward } 0 20 {D24R:G -> D25R:U: adjacent_5p upward } 0 21 {D25R:U -> D24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E3R:U 0 1 E4R:G 0 2 E5R:G 0 3 E6R:U 0 4 F29R:A 0 5 F30R:C 0 6 F31R:C 0 7 F32R:A 0 [Edges] 0 {E3R:U -> E4R:G: adjacent_5p } 0 1 {E4R:G -> E3R:U: adjacent_3p } 0 2 {E3R:U -> F32R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {F32R:A -> E3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {E4R:G -> E5R:G: adjacent_5p upward } 0 5 {E5R:G -> E4R:G: adjacent_3p downward } 0 6 {E4R:G -> F31R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {F31R:C -> E4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E4R:G -> F32R:A: outward } 0 9 {F32R:A -> E4R:G: outward } 0 10 {E5R:G -> E6R:U: adjacent_5p upward } 0 11 {E6R:U -> E5R:G: adjacent_3p downward } 0 12 {E5R:G -> F30R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {F30R:C -> E5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {E6R:U -> F29R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {F29R:A -> E6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {F29R:A -> F30R:C: adjacent_5p upward } 0 17 {F30R:C -> F29R:A: adjacent_3p downward } 0 18 {F30R:C -> F31R:C: adjacent_5p upward } 0 19 {F31R:C -> F30R:C: adjacent_3p downward } 0 20 {F31R:C -> F32R:A: adjacent_5p upward } 0 21 {F32R:A -> F31R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 E4R:G 0 1 E5R:G 0 2 E6R:U 0 3 E7R:G 0 4 F28R:C 0 5 F29R:A 0 6 F30R:C 0 7 F31R:C 0 [Edges] 0 {E4R:G -> E5R:G: adjacent_5p upward } 0 1 {E5R:G -> E4R:G: adjacent_3p downward } 0 2 {E4R:G -> F31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {F31R:C -> E4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E5R:G -> E6R:U: adjacent_5p upward } 0 5 {E6R:U -> E5R:G: adjacent_3p downward } 0 6 {E5R:G -> F30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {F30R:C -> E5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E6R:U -> E7R:G: adjacent_5p upward } 0 9 {E7R:G -> E6R:U: adjacent_3p downward } 0 10 {E6R:U -> F29R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {F29R:A -> E6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {E7R:G -> F28R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {F28R:C -> E7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {E7R:G -> F29R:A: outward } 0 15 {F29R:A -> E7R:G: outward } 0 16 {F28R:C -> F29R:A: adjacent_5p upward } 0 17 {F29R:A -> F28R:C: adjacent_3p downward } 0 18 {F29R:A -> F30R:C: adjacent_5p upward } 0 19 {F30R:C -> F29R:A: adjacent_3p downward } 0 20 {F30R:C -> F31R:C: adjacent_5p upward } 0 21 {F31R:C -> F30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E10R:G 0 1 E11R:U 0 2 E12R:C 0 3 E13R:G 0 4 F23R:C 0 5 F24R:G 0 6 F25R:U 0 7 F26R:C 0 [Edges] 0 {E10R:G -> E11R:U: adjacent_5p upward } 0 1 {E11R:U -> E10R:G: adjacent_3p downward } 0 2 {E10R:G -> F26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {F26R:C -> E10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E11R:U -> E12R:C: adjacent_5p upward } 0 5 {E12R:C -> E11R:U: adjacent_3p downward } 0 6 {E11R:U -> F25R:U: pairing antiparallel cis XVI Ws/Ww } 0 7 {F25R:U -> E11R:U: pairing antiparallel cis XVI Ww/Ws } 0 8 {E12R:C -> E13R:G: adjacent_5p } 0 9 {E13R:G -> E12R:C: adjacent_3p } 0 10 {E12R:C -> F24R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {F24R:G -> E12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {E13R:G -> F23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {F23R:C -> E13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {E13R:G -> F24R:G: outward } 0 15 {F24R:G -> E13R:G: outward } 0 16 {F23R:C -> F24R:G: adjacent_5p upward } 0 17 {F24R:G -> F23R:C: adjacent_3p downward } 0 18 {F24R:G -> F25R:U: adjacent_5p upward } 0 19 {F25R:U -> F24R:G: adjacent_3p downward } 0 20 {F25R:U -> F26R:C: adjacent_5p upward } 0 21 {F26R:C -> F25R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E11R:U 0 1 E12R:C 0 2 E13R:G 0 3 E14R:C 0 4 F22R:G 0 5 F23R:C 0 6 F24R:G 0 7 F25R:U 0 [Edges] 0 {E11R:U -> E12R:C: adjacent_5p upward } 0 1 {E12R:C -> E11R:U: adjacent_3p downward } 0 2 {E11R:U -> F25R:U: pairing antiparallel cis XVI Ws/Ww } 0 3 {F25R:U -> E11R:U: pairing antiparallel cis XVI Ww/Ws } 0 4 {E12R:C -> E13R:G: adjacent_5p } 0 5 {E13R:G -> E12R:C: adjacent_3p } 0 6 {E12R:C -> F24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {F24R:G -> E12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E13R:G -> E14R:C: adjacent_5p upward } 0 9 {E14R:C -> E13R:G: adjacent_3p downward } 0 10 {E13R:G -> F23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {F23R:C -> E13R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E13R:G -> F24R:G: outward } 0 13 {F24R:G -> E13R:G: outward } 0 14 {E14R:C -> F22R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {F22R:G -> E14R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {F22R:G -> F23R:C: adjacent_5p upward } 0 17 {F23R:C -> F22R:G: adjacent_3p downward } 0 18 {F23R:C -> F24R:G: adjacent_5p upward } 0 19 {F24R:G -> F23R:C: adjacent_3p downward } 0 20 {F24R:G -> F25R:U: adjacent_5p upward } 0 21 {F25R:U -> F24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 G3R:U 0 1 G4R:G 0 2 G5R:G 0 3 G6R:U 0 4 H29R:A 0 5 H30R:C 0 6 H31R:C 0 7 H32R:A 0 [Edges] 0 {G3R:U -> G4R:G: adjacent_5p upward } 0 1 {G4R:G -> G3R:U: adjacent_3p downward } 0 2 {G3R:U -> H32R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {H32R:A -> G3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {G4R:G -> G5R:G: adjacent_5p upward } 0 5 {G5R:G -> G4R:G: adjacent_3p downward } 0 6 {G4R:G -> H31R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {H31R:C -> G4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {G4R:G -> H32R:A: outward } 0 9 {H32R:A -> G4R:G: outward } 0 10 {G5R:G -> G6R:U: adjacent_5p upward } 0 11 {G6R:U -> G5R:G: adjacent_3p downward } 0 12 {G5R:G -> H30R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {H30R:C -> G5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {G6R:U -> H29R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {H29R:A -> G6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {H29R:A -> H30R:C: adjacent_5p upward } 0 17 {H30R:C -> H29R:A: adjacent_3p downward } 0 18 {H30R:C -> H31R:C: adjacent_5p upward } 0 19 {H31R:C -> H30R:C: adjacent_3p downward } 0 20 {H31R:C -> H32R:A: adjacent_5p upward } 0 21 {H32R:A -> H31R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 G4R:G 0 1 G5R:G 0 2 G6R:U 0 3 G7R:G 0 4 H28R:C 0 5 H29R:A 0 6 H30R:C 0 7 H31R:C 0 [Edges] 0 {G4R:G -> G5R:G: adjacent_5p upward } 0 1 {G5R:G -> G4R:G: adjacent_3p downward } 0 2 {G4R:G -> H31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {H31R:C -> G4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {G5R:G -> G6R:U: adjacent_5p upward } 0 5 {G6R:U -> G5R:G: adjacent_3p downward } 0 6 {G5R:G -> H30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {H30R:C -> G5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {G6R:U -> G7R:G: adjacent_5p upward } 0 9 {G7R:G -> G6R:U: adjacent_3p downward } 0 10 {G6R:U -> H29R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {H29R:A -> G6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {G7R:G -> H28R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {H28R:C -> G7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {G7R:G -> H29R:A: outward } 0 15 {H29R:A -> G7R:G: outward } 0 16 {H28R:C -> H29R:A: adjacent_5p upward } 0 17 {H29R:A -> H28R:C: adjacent_3p downward } 0 18 {H29R:A -> H30R:C: adjacent_5p upward } 0 19 {H30R:C -> H29R:A: adjacent_3p downward } 0 20 {H30R:C -> H31R:C: adjacent_5p upward } 0 21 {H31R:C -> H30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 G10R:G 0 1 G11R:U 0 2 G12R:C 0 3 G13R:G 0 4 H23R:C 0 5 H24R:G 0 6 H25R:U 0 7 H26R:C 0 [Edges] 0 {G10R:G -> G11R:U: adjacent_5p upward } 0 1 {G11R:U -> G10R:G: adjacent_3p downward } 0 2 {G10R:G -> H26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {H26R:C -> G10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {G11R:U -> G12R:C: adjacent_5p upward } 0 5 {G12R:C -> G11R:U: adjacent_3p downward } 0 6 {G11R:U -> H25R:U: pairing antiparallel cis XVI Ws/Ww } 0 7 {H25R:U -> G11R:U: pairing antiparallel cis XVI Ww/Ws } 0 8 {G12R:C -> G13R:G: adjacent_5p } 0 9 {G13R:G -> G12R:C: adjacent_3p } 0 10 {G12R:C -> H24R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {H24R:G -> G12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {G13R:G -> H23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {H23R:C -> G13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {G13R:G -> H24R:G: outward } 0 15 {H24R:G -> G13R:G: outward } 0 16 {H23R:C -> H24R:G: adjacent_5p upward } 0 17 {H24R:G -> H23R:C: adjacent_3p downward } 0 18 {H24R:G -> H25R:U: adjacent_5p upward } 0 19 {H25R:U -> H24R:G: adjacent_3p downward } 0 20 {H25R:U -> H26R:C: adjacent_5p upward } 0 21 {H26R:C -> H25R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 G11R:U 0 1 G12R:C 0 2 G13R:G 0 3 G14R:C 0 4 H22R:G 0 5 H23R:C 0 6 H24R:G 0 7 H25R:U 0 [Edges] 0 {G11R:U -> G12R:C: adjacent_5p upward } 0 1 {G12R:C -> G11R:U: adjacent_3p downward } 0 2 {G11R:U -> H25R:U: pairing antiparallel cis XVI Ws/Ww } 0 3 {H25R:U -> G11R:U: pairing antiparallel cis XVI Ww/Ws } 0 4 {G12R:C -> G13R:G: adjacent_5p } 0 5 {G13R:G -> G12R:C: adjacent_3p } 0 6 {G12R:C -> H24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {H24R:G -> G12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {G13R:G -> G14R:C: adjacent_5p upward } 0 9 {G14R:C -> G13R:G: adjacent_3p downward } 0 10 {G13R:G -> H23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {H23R:C -> G13R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {G13R:G -> H24R:G: outward } 0 13 {H24R:G -> G13R:G: outward } 0 14 {G14R:C -> H22R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {H22R:G -> G14R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {H22R:G -> H23R:C: adjacent_5p upward } 0 17 {H23R:C -> H22R:G: adjacent_3p downward } 0 18 {H23R:C -> H24R:G: adjacent_5p upward } 0 19 {H24R:G -> H23R:C: adjacent_3p downward } 0 20 {H24R:G -> H25R:U: adjacent_5p upward } 0 21 {H25R:U -> H24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:G 0 3 A6R:U 0 4 B29R:A 0 5 B30R:C 0 6 B31R:C 0 7 B32R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> B32R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B32R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B31R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B31R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> B32R:A: outward } 0 9 {B32R:A -> A4R:G: outward } 0 10 {A5R:G -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:G: adjacent_3p downward } 0 12 {A6R:U -> B29R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B29R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B29R:A -> B30R:C: adjacent_5p upward } 0 15 {B30R:C -> B29R:A: adjacent_3p downward } 0 16 {B30R:C -> B31R:C: adjacent_5p } 0 17 {B31R:C -> B30R:C: adjacent_3p } 0 18 {B31R:C -> B32R:A: adjacent_5p upward } 0 19 {B32R:A -> B31R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . . . . 3 . . 11 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 9 . . . . 19 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:G 0 2 A6R:U 0 3 A7R:G 0 4 B28R:C 0 5 B29R:A 0 6 B30R:C 0 7 B31R:C 0 [Edges] 0 {A4R:G -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B31R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:G -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:G: adjacent_3p downward } 0 6 {A6R:U -> A7R:G: adjacent_5p upward } 0 7 {A7R:G -> A6R:U: adjacent_3p downward } 0 8 {A6R:U -> B29R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {B29R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A7R:G -> B28R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B28R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:G -> B29R:A: outward } 0 13 {B29R:A -> A7R:G: outward } 0 14 {B28R:C -> B29R:A: adjacent_5p } 0 15 {B29R:A -> B28R:C: adjacent_3p } 0 16 {B29R:A -> B30R:C: adjacent_5p upward } 0 17 {B30R:C -> B29R:A: adjacent_3p downward } 0 18 {B30R:C -> B31R:C: adjacent_5p } 0 19 {B31R:C -> B30R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 12 . . 4 . . . 11 . 14 . . 5 . . 9 13 15 . 16 . 6 . . . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:U 0 2 A12R:C 0 3 A13R:G 0 4 B23R:C 0 5 B24R:G 0 6 B25R:U 0 7 B26R:C 0 [Edges] 0 {A10R:G -> A11R:U: adjacent_5p upward } 0 1 {A11R:U -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> B26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B26R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:U -> A12R:C: adjacent_5p upward } 0 5 {A12R:C -> A11R:U: adjacent_3p downward } 0 6 {A12R:C -> A13R:G: adjacent_5p upward } 0 7 {A13R:G -> A12R:C: adjacent_3p downward } 0 8 {A12R:C -> B24R:G: pairing antiparallel cis Ww/Ww } 0 9 {B24R:G -> A12R:C: pairing antiparallel cis Ww/Ww } 0 10 {A13R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B23R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:G -> B24R:G: outward } 0 13 {B24R:G -> A13R:G: outward } 0 14 {B23R:C -> B24R:G: adjacent_5p upward } 0 15 {B24R:G -> B23R:C: adjacent_3p downward } 0 16 {B24R:G -> B25R:U: adjacent_5p upward } 0 17 {B25R:U -> B24R:G: adjacent_3p downward } 0 18 {B25R:U -> B26R:C: adjacent_5p upward } 0 19 {B26R:C -> B25R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 12 . . 4 . . . 11 . 14 . . 5 . . 9 13 15 . 16 . 6 . . . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C3R:U 0 1 C4R:G 0 2 C5R:G 0 3 C6R:U 0 4 D29R:A 0 5 D30R:C 0 6 D31R:C 0 7 D32R:A 0 [Edges] 0 {C3R:U -> C4R:G: adjacent_5p } 0 1 {C4R:G -> C3R:U: adjacent_3p } 0 2 {C3R:U -> D32R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D32R:A -> C3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C4R:G -> C5R:G: adjacent_5p upward } 0 5 {C5R:G -> C4R:G: adjacent_3p downward } 0 6 {C4R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D31R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:G -> D32R:A: outward } 0 9 {D32R:A -> C4R:G: outward } 0 10 {C5R:G -> C6R:U: adjacent_5p upward } 0 11 {C6R:U -> C5R:G: adjacent_3p downward } 0 12 {C5R:G -> D30R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D30R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C6R:U -> D29R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {D29R:A -> C6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {D29R:A -> D30R:C: adjacent_5p upward } 0 17 {D30R:C -> D29R:A: adjacent_3p downward } 0 18 {D30R:C -> D31R:C: adjacent_5p } 0 19 {D31R:C -> D30R:C: adjacent_3p } 0 20 {D31R:C -> D32R:A: adjacent_5p upward } 0 21 {D32R:A -> D31R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C4R:G 0 1 C5R:G 0 2 C6R:U 0 3 C7R:G 0 4 D28R:C 0 5 D29R:A 0 6 D30R:C 0 7 D31R:C 0 [Edges] 0 {C4R:G -> C5R:G: adjacent_5p upward } 0 1 {C5R:G -> C4R:G: adjacent_3p downward } 0 2 {C4R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D31R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C5R:G -> C6R:U: adjacent_5p upward } 0 5 {C6R:U -> C5R:G: adjacent_3p downward } 0 6 {C5R:G -> D30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D30R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C6R:U -> C7R:G: adjacent_5p upward } 0 9 {C7R:G -> C6R:U: adjacent_3p downward } 0 10 {C6R:U -> D29R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D29R:A -> C6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C7R:G -> D28R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D28R:C -> C7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C7R:G -> D29R:A: outward } 0 15 {D29R:A -> C7R:G: outward } 0 16 {D28R:C -> D29R:A: adjacent_5p } 0 17 {D29R:A -> D28R:C: adjacent_3p } 0 18 {D29R:A -> D30R:C: adjacent_5p upward } 0 19 {D30R:C -> D29R:A: adjacent_3p downward } 0 20 {D30R:C -> D31R:C: adjacent_5p } 0 21 {D31R:C -> D30R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C10R:G 0 1 C11R:U 0 2 C12R:C 0 3 C13R:G 0 4 D23R:C 0 5 D24R:G 0 6 D25R:U 0 7 D26R:C 0 [Edges] 0 {C10R:G -> C11R:U: adjacent_5p upward } 0 1 {C11R:U -> C10R:G: adjacent_3p downward } 0 2 {C10R:G -> D26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D26R:C -> C10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C11R:U -> C12R:C: adjacent_5p upward } 0 5 {C12R:C -> C11R:U: adjacent_3p downward } 0 6 {C12R:C -> C13R:G: adjacent_5p } 0 7 {C13R:G -> C12R:C: adjacent_3p } 0 8 {C12R:C -> D24R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {D24R:G -> C12R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {C13R:G -> D23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D23R:C -> C13R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C13R:G -> D24R:G: outward } 0 13 {D24R:G -> C13R:G: outward } 0 14 {D23R:C -> D24R:G: adjacent_5p upward } 0 15 {D24R:G -> D23R:C: adjacent_3p downward } 0 16 {D24R:G -> D25R:U: adjacent_5p upward } 0 17 {D25R:U -> D24R:G: adjacent_3p downward } 0 18 {D25R:U -> D26R:C: adjacent_5p upward } 0 19 {D26R:C -> D25R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 12 . . 4 . . . 11 . 14 . . 5 . . 9 13 15 . 16 . 6 . . . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:C 0 3 A5R:U 0 4 B20R:G 0 5 B21R:G 0 6 B22R:U 0 7 B23R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B23R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> B22R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B22R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A3R:A -> B23R:C: outward } 0 9 {B23R:C -> A3R:A: outward } 0 10 {A4R:C -> A5R:U: adjacent_5p upward } 0 11 {A5R:U -> A4R:C: adjacent_3p downward } 0 12 {A4R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B21R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A5R:U -> B20R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {B20R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {B20R:G -> B21R:G: adjacent_5p upward } 0 17 {B21R:G -> B20R:G: adjacent_3p downward } 0 18 {B21R:G -> B22R:U: adjacent_5p upward } 0 19 {B22R:U -> B21R:G: adjacent_3p downward } 0 20 {B22R:U -> B23R:C: adjacent_5p } 0 21 {B23R:C -> B22R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:C 0 2 A5R:U 0 3 A6R:U 0 4 B19R:U 0 5 B20R:G 0 6 B21R:G 0 7 B22R:U 0 [Edges] 0 {A3R:A -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> B22R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B22R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:C -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B21R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> A6R:U: adjacent_5p upward } 0 9 {A6R:U -> A5R:U: adjacent_3p downward } 0 10 {A5R:U -> B20R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B20R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A6R:U -> B19R:U: pairing antiparallel cis one_hbond Ww/Wh } 0 13 {B19R:U -> A6R:U: pairing antiparallel cis one_hbond Wh/Ww } 0 14 {B19R:U -> B20R:G: adjacent_5p } 0 15 {B20R:G -> B19R:U: adjacent_3p } 0 16 {B20R:G -> B21R:G: adjacent_5p upward } 0 17 {B21R:G -> B20R:G: adjacent_3p downward } 0 18 {B21R:G -> B22R:U: adjacent_5p upward } 0 19 {B22R:U -> B21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:U 0 2 A6R:U 0 3 A7R:U 0 4 B18R:U 0 5 B19R:U 0 6 B20R:G 0 7 B21R:G 0 [Edges] 0 {A4R:C -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B21R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> B20R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B20R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A6R:U -> A7R:U: adjacent_5p upward } 0 9 {A7R:U -> A6R:U: adjacent_3p downward } 0 10 {A6R:U -> B19R:U: pairing antiparallel cis one_hbond Ww/Wh } 0 11 {B19R:U -> A6R:U: pairing antiparallel cis one_hbond Wh/Ww } 0 12 {A7R:U -> B18R:U: pairing antiparallel cis XVI Ww/Ws } 0 13 {B18R:U -> A7R:U: pairing antiparallel cis XVI Ws/Ww } 0 14 {B18R:U -> B19R:U: adjacent_5p } 0 15 {B19R:U -> B18R:U: adjacent_3p } 0 16 {B19R:U -> B20R:G: adjacent_5p } 0 17 {B20R:G -> B19R:U: adjacent_3p } 0 18 {B20R:G -> B21R:G: adjacent_5p upward } 0 19 {B21R:G -> B20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:U 0 2 A7R:U 0 3 A8R:G 0 4 B17R:U 0 5 B18R:U 0 6 B19R:U 0 7 B20R:G 0 [Edges] 0 {A5R:U -> A6R:U: adjacent_5p upward } 0 1 {A6R:U -> A5R:U: adjacent_3p downward } 0 2 {A5R:U -> B20R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B20R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A6R:U -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:U: adjacent_3p downward } 0 6 {A6R:U -> B19R:U: pairing antiparallel cis one_hbond Ww/Wh } 0 7 {B19R:U -> A6R:U: pairing antiparallel cis one_hbond Wh/Ww } 0 8 {A7R:U -> A8R:G: adjacent_5p upward } 0 9 {A8R:G -> A7R:U: adjacent_3p downward } 0 10 {A7R:U -> B18R:U: pairing antiparallel cis XVI Ww/Ws } 0 11 {B18R:U -> A7R:U: pairing antiparallel cis XVI Ws/Ww } 0 12 {A8R:G -> B17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B17R:U -> A8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {B17R:U -> B18R:U: adjacent_5p } 0 15 {B18R:U -> B17R:U: adjacent_3p } 0 16 {B18R:U -> B19R:U: adjacent_5p } 0 17 {B19R:U -> B18R:U: adjacent_3p } 0 18 {B19R:U -> B20R:G: adjacent_5p } 0 19 {B20R:G -> B19R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:U 0 1 A7R:U 0 2 A8R:G 0 3 A9R:G 0 4 B16R:C 0 5 B17R:U 0 6 B18R:U 0 7 B19R:U 0 [Edges] 0 {A6R:U -> A7R:U: adjacent_5p upward } 0 1 {A7R:U -> A6R:U: adjacent_3p downward } 0 2 {A6R:U -> B19R:U: pairing antiparallel cis one_hbond Ww/Wh } 0 3 {B19R:U -> A6R:U: pairing antiparallel cis one_hbond Wh/Ww } 0 4 {A7R:U -> A8R:G: adjacent_5p upward } 0 5 {A8R:G -> A7R:U: adjacent_3p downward } 0 6 {A7R:U -> B18R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {B18R:U -> A7R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {A8R:G -> A9R:G: adjacent_5p } 0 9 {A9R:G -> A8R:G: adjacent_3p } 0 10 {A8R:G -> B17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B17R:U -> A8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A9R:G -> B16R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B16R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B16R:C -> B17R:U: adjacent_5p upward } 0 15 {B17R:U -> B16R:C: adjacent_3p downward } 0 16 {B17R:U -> B18R:U: adjacent_5p } 0 17 {B18R:U -> B17R:U: adjacent_3p } 0 18 {B18R:U -> B19R:U: adjacent_5p } 0 19 {B19R:U -> B18R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:U 0 1 A8R:G 0 2 A9R:G 0 3 A10R:U 0 4 B15R:A 0 5 B16R:C 0 6 B17R:U 0 7 B18R:U 0 [Edges] 0 {A7R:U -> A8R:G: adjacent_5p upward } 0 1 {A8R:G -> A7R:U: adjacent_3p downward } 0 2 {A7R:U -> B18R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {B18R:U -> A7R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {A8R:G -> A9R:G: adjacent_5p } 0 5 {A9R:G -> A8R:G: adjacent_3p } 0 6 {A8R:G -> B17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B17R:U -> A8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A9R:G -> A10R:U: adjacent_5p upward } 0 9 {A10R:U -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> B16R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B16R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:U -> B15R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B15R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B15R:A -> B16R:C: adjacent_5p upward } 0 15 {B16R:C -> B15R:A: adjacent_3p downward } 0 16 {B16R:C -> B17R:U: adjacent_5p upward } 0 17 {B17R:U -> B16R:C: adjacent_3p downward } 0 18 {B17R:U -> B18R:U: adjacent_5p } 0 19 {B18R:U -> B17R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:G 0 2 A10R:U 0 3 A11R:C 0 4 B14R:G 0 5 B15R:A 0 6 B16R:C 0 7 B17R:U 0 [Edges] 0 {A8R:G -> A9R:G: adjacent_5p } 0 1 {A9R:G -> A8R:G: adjacent_3p } 0 2 {A8R:G -> B17R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B17R:U -> A8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A9R:G -> A10R:U: adjacent_5p upward } 0 5 {A10R:U -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> B16R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B16R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:U -> A11R:C: adjacent_5p } 0 9 {A11R:C -> A10R:U: adjacent_3p } 0 10 {A10R:U -> B15R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B15R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A11R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B14R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B14R:G -> B15R:A: adjacent_5p upward } 0 15 {B15R:A -> B14R:G: adjacent_3p downward } 0 16 {B15R:A -> B16R:C: adjacent_5p upward } 0 17 {B16R:C -> B15R:A: adjacent_3p downward } 0 18 {B16R:C -> B17R:U: adjacent_5p upward } 0 19 {B17R:U -> B16R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:U 0 1 A3R:A 0 2 A4R:U 0 3 A5R:A 0 4 B12R:U 0 5 B13R:A 0 6 B14R:U 0 7 B15R:A 0 [Edges] 0 {A2R:U -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:U: adjacent_3p downward } 0 2 {A2R:U -> B15R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B15R:A -> A2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:A -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> B14R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B14R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A3R:A -> B15R:A: outward } 0 9 {B15R:A -> A3R:A: outward } 0 10 {A4R:U -> A5R:A: adjacent_5p upward } 0 11 {A5R:A -> A4R:U: adjacent_3p downward } 0 12 {A4R:U -> B13R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B13R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A5R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B12R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A5R:A -> B13R:A: outward } 0 17 {B13R:A -> A5R:A: outward } 0 18 {B12R:U -> B13R:A: adjacent_5p upward } 0 19 {B13R:A -> B12R:U: adjacent_3p downward } 0 20 {B13R:A -> B14R:U: adjacent_5p upward } 0 21 {B14R:U -> B13R:A: adjacent_3p downward } 0 22 {B14R:U -> B15R:A: adjacent_5p upward } 0 23 {B15R:A -> B14R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:U 0 2 A5R:A 0 3 A6R:U 0 4 B11R:A 0 5 B12R:U 0 6 B13R:A 0 7 B14R:U 0 [Edges] 0 {A3R:A -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> B14R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B14R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:U -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:U: adjacent_3p downward } 0 6 {A4R:U -> B13R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B13R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:A -> A6R:U: adjacent_5p upward } 0 9 {A6R:U -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B12R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:A -> B13R:A: outward } 0 13 {B13R:A -> A5R:A: outward } 0 14 {A6R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B11R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B11R:A -> B12R:U: adjacent_5p upward } 0 17 {B12R:U -> B11R:A: adjacent_3p downward } 0 18 {B12R:U -> B13R:A: adjacent_5p upward } 0 19 {B13R:A -> B12R:U: adjacent_3p downward } 0 20 {B13R:A -> B14R:U: adjacent_5p upward } 0 21 {B14R:U -> B13R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:A 0 2 A6R:U 0 3 A7R:A 0 4 B10R:U 0 5 B11R:A 0 6 B12R:U 0 7 B13R:A 0 [Edges] 0 {A4R:U -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:U: adjacent_3p downward } 0 2 {A4R:U -> B13R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B13R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:A -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B12R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:A -> B13R:A: outward } 0 9 {B13R:A -> A5R:A: outward } 0 10 {A6R:U -> A7R:A: adjacent_5p upward } 0 11 {A7R:A -> A6R:U: adjacent_3p downward } 0 12 {A6R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B11R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A7R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B10R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A7R:A -> B11R:A: outward } 0 17 {B11R:A -> A7R:A: outward } 0 18 {B10R:U -> B11R:A: adjacent_5p upward } 0 19 {B11R:A -> B10R:U: adjacent_3p downward } 0 20 {B11R:A -> B12R:U: adjacent_5p upward } 0 21 {B12R:U -> B11R:A: adjacent_3p downward } 0 22 {B12R:U -> B13R:A: adjacent_5p upward } 0 23 {B13R:A -> B12R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A2R:C 0 1 A3R:C 0 2 A4R:C 0 3 A5R:G 0 4 B12R:C 0 5 B13R:G 0 6 B14R:G 0 7 B15R:G 0 [Edges] 0 {A2R:C -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:C: adjacent_3p downward } 0 2 {A2R:C -> B15R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B14R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B13R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B12R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A5R:G -> B13R:G: outward } 0 15 {B13R:G -> A5R:G: outward } 0 16 {B12R:C -> B13R:G: adjacent_5p upward } 0 17 {B13R:G -> B12R:C: adjacent_3p downward } 0 18 {B13R:G -> B14R:G: adjacent_5p upward } 0 19 {B14R:G -> B13R:G: adjacent_3p downward } 0 20 {B14R:G -> B15R:G: adjacent_5p upward } 0 21 {B15R:G -> B14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:C 0 2 A5R:G 0 3 A6R:G 0 4 B11R:C 0 5 B12R:C 0 6 B13R:G 0 7 B14R:G 0 [Edges] 0 {A3R:C -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B14R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B13R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A6R:G: adjacent_5p upward } 0 9 {A6R:G -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B12R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> B13R:G: outward } 0 13 {B13R:G -> A5R:G: outward } 0 14 {A6R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B11R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B11R:C -> B12R:C: adjacent_5p upward } 0 17 {B12R:C -> B11R:C: adjacent_3p downward } 0 18 {B12R:C -> B13R:G: adjacent_5p upward } 0 19 {B13R:G -> B12R:C: adjacent_3p downward } 0 20 {B13R:G -> B14R:G: adjacent_5p upward } 0 21 {B14R:G -> B13R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:G 0 2 A6R:G 0 3 A7R:G 0 4 B10R:C 0 5 B11R:C 0 6 B12R:C 0 7 B13R:G 0 [Edges] 0 {A4R:C -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B13R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:G -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> B13R:G: outward } 0 9 {B13R:G -> A5R:G: outward } 0 10 {A6R:G -> A7R:G: adjacent_5p upward } 0 11 {A7R:G -> A6R:G: adjacent_3p downward } 0 12 {A6R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B11R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B10R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B10R:C -> B11R:C: adjacent_5p upward } 0 17 {B11R:C -> B10R:C: adjacent_3p downward } 0 18 {B11R:C -> B12R:C: adjacent_5p upward } 0 19 {B12R:C -> B11R:C: adjacent_3p downward } 0 20 {B12R:C -> B13R:G: adjacent_5p upward } 0 21 {B13R:G -> B12R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:C 0 4 B20R:G 0 5 B21R:C 0 6 B22R:G 0 7 B23R:U 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B23R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B23R:U -> A2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B22R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> B21R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B21R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> B22R:G: outward } 0 13 {B22R:G -> A4R:G: outward } 0 14 {A5R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B20R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B20R:G -> B21R:C: adjacent_5p upward } 0 17 {B21R:C -> B20R:G: adjacent_3p downward } 0 18 {B21R:C -> B22R:G: adjacent_5p upward } 0 19 {B22R:G -> B21R:C: adjacent_3p downward } 0 20 {B22R:G -> B23R:U: adjacent_5p upward } 0 21 {B23R:U -> B22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:C 0 3 A6R:U 0 4 B19R:U 0 5 B20R:G 0 6 B21R:C 0 7 B22R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B22R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B21R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> B22R:G: outward } 0 9 {B22R:G -> A4R:G: outward } 0 10 {A5R:C -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:C: adjacent_3p downward } 0 12 {A5R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B20R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:U -> B19R:U: pairing antiparallel cis XVI Ws/Ww } 0 15 {B19R:U -> A6R:U: pairing antiparallel cis XVI Ww/Ws } 0 16 {B19R:U -> B20R:G: adjacent_5p upward } 0 17 {B20R:G -> B19R:U: adjacent_3p downward } 0 18 {B20R:G -> B21R:C: adjacent_5p upward } 0 19 {B21R:C -> B20R:G: adjacent_3p downward } 0 20 {B21R:C -> B22R:G: adjacent_5p upward } 0 21 {B22R:G -> B21R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:C 0 2 A6R:U 0 3 A7R:U 0 4 B18R:U 0 5 B19R:U 0 6 B20R:G 0 7 B21R:C 0 [Edges] 0 {A4R:G -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B21R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B20R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:U -> A7R:U: adjacent_5p } 0 9 {A7R:U -> A6R:U: adjacent_3p } 0 10 {A6R:U -> B19R:U: pairing antiparallel cis XVI Ws/Ww } 0 11 {B19R:U -> A6R:U: pairing antiparallel cis XVI Ww/Ws } 0 12 {A7R:U -> B18R:U: pairing antiparallel cis XVI Ww/Ws } 0 13 {B18R:U -> A7R:U: pairing antiparallel cis XVI Ws/Ww } 0 14 {B18R:U -> B19R:U: adjacent_5p } 0 15 {B19R:U -> B18R:U: adjacent_3p } 0 16 {B19R:U -> B20R:G: adjacent_5p upward } 0 17 {B20R:G -> B19R:U: adjacent_3p downward } 0 18 {B20R:G -> B21R:C: adjacent_5p upward } 0 19 {B21R:C -> B20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:U 0 2 A7R:U 0 3 A8R:G 0 4 B17R:C 0 5 B18R:U 0 6 B19R:U 0 7 B20R:G 0 [Edges] 0 {A5R:C -> A6R:U: adjacent_5p upward } 0 1 {A6R:U -> A5R:C: adjacent_3p downward } 0 2 {A5R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B20R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:U -> A7R:U: adjacent_5p } 0 5 {A7R:U -> A6R:U: adjacent_3p } 0 6 {A6R:U -> B19R:U: pairing antiparallel cis XVI Ws/Ww } 0 7 {B19R:U -> A6R:U: pairing antiparallel cis XVI Ww/Ws } 0 8 {A7R:U -> A8R:G: adjacent_5p upward } 0 9 {A8R:G -> A7R:U: adjacent_3p downward } 0 10 {A7R:U -> B18R:U: pairing antiparallel cis XVI Ww/Ws } 0 11 {B18R:U -> A7R:U: pairing antiparallel cis XVI Ws/Ww } 0 12 {A8R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B17R:C -> B18R:U: adjacent_5p upward } 0 15 {B18R:U -> B17R:C: adjacent_3p downward } 0 16 {B18R:U -> B19R:U: adjacent_5p } 0 17 {B19R:U -> B18R:U: adjacent_3p } 0 18 {B19R:U -> B20R:G: adjacent_5p upward } 0 19 {B20R:G -> B19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:U 0 1 A7R:U 0 2 A8R:G 0 3 A9R:C 0 4 B16R:G 0 5 B17R:C 0 6 B18R:U 0 7 B19R:U 0 [Edges] 0 {A6R:U -> A7R:U: adjacent_5p } 0 1 {A7R:U -> A6R:U: adjacent_3p } 0 2 {A6R:U -> B19R:U: pairing antiparallel cis XVI Ws/Ww } 0 3 {B19R:U -> A6R:U: pairing antiparallel cis XVI Ww/Ws } 0 4 {A7R:U -> A8R:G: adjacent_5p upward } 0 5 {A8R:G -> A7R:U: adjacent_3p downward } 0 6 {A7R:U -> B18R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {B18R:U -> A7R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {A8R:G -> A9R:C: adjacent_5p upward } 0 9 {A9R:C -> A8R:G: adjacent_3p downward } 0 10 {A8R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B16R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B16R:G -> B17R:C: adjacent_5p upward } 0 15 {B17R:C -> B16R:G: adjacent_3p downward } 0 16 {B17R:C -> B18R:U: adjacent_5p upward } 0 17 {B18R:U -> B17R:C: adjacent_3p downward } 0 18 {B18R:U -> B19R:U: adjacent_5p } 0 19 {B19R:U -> B18R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:U 0 1 A8R:G 0 2 A9R:C 0 3 A10R:G 0 4 B15R:C 0 5 B16R:G 0 6 B17R:C 0 7 B18R:U 0 [Edges] 0 {A7R:U -> A8R:G: adjacent_5p upward } 0 1 {A8R:G -> A7R:U: adjacent_3p downward } 0 2 {A7R:U -> B18R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {B18R:U -> A7R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {A8R:G -> A9R:C: adjacent_5p upward } 0 5 {A9R:C -> A8R:G: adjacent_3p downward } 0 6 {A8R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:C -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:C: adjacent_3p downward } 0 10 {A9R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B16R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B15R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A10R:G -> B16R:G: outward } 0 15 {B16R:G -> A10R:G: outward } 0 16 {B15R:C -> B16R:G: adjacent_5p } 0 17 {B16R:G -> B15R:C: adjacent_3p } 0 18 {B16R:G -> B17R:C: adjacent_5p upward } 0 19 {B17R:C -> B16R:G: adjacent_3p downward } 0 20 {B17R:C -> B18R:U: adjacent_5p upward } 0 21 {B18R:U -> B17R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:C 0 2 A10R:G 0 3 A11R:U 0 4 B14R:G 0 5 B15R:C 0 6 B16R:G 0 7 B17R:C 0 [Edges] 0 {A8R:G -> A9R:C: adjacent_5p upward } 0 1 {A9R:C -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:C -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:C: adjacent_3p downward } 0 6 {A9R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B16R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:G -> A11R:U: adjacent_5p upward } 0 9 {A11R:U -> A10R:G: adjacent_3p downward } 0 10 {A10R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B15R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A10R:G -> B16R:G: outward } 0 13 {B16R:G -> A10R:G: outward } 0 14 {A11R:U -> B14R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {B14R:G -> A11R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {B14R:G -> B15R:C: adjacent_5p upward } 0 17 {B15R:C -> B14R:G: adjacent_3p downward } 0 18 {B15R:C -> B16R:G: adjacent_5p } 0 19 {B16R:G -> B15R:C: adjacent_3p } 0 20 {B16R:G -> B17R:C: adjacent_5p upward } 0 21 {B17R:C -> B16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C26R:G 0 1 C27R:C 0 2 C28R:G 0 3 C29R:C 0 4 D44R:G 0 5 D45R:C 0 6 D46R:G 0 7 D47R:U 0 [Edges] 0 {C26R:G -> C27R:C: adjacent_5p upward } 0 1 {C27R:C -> C26R:G: adjacent_3p downward } 0 2 {C26R:G -> D47R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {D47R:U -> C26R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {C27R:C -> C28R:G: adjacent_5p upward } 0 5 {C28R:G -> C27R:C: adjacent_3p downward } 0 6 {C27R:C -> D46R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D46R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C28R:G -> C29R:C: adjacent_5p upward } 0 9 {C29R:C -> C28R:G: adjacent_3p downward } 0 10 {C28R:G -> D45R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D45R:C -> C28R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C28R:G -> D46R:G: outward } 0 13 {D46R:G -> C28R:G: outward } 0 14 {C29R:C -> D44R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D44R:G -> C29R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D44R:G -> D45R:C: adjacent_5p upward } 0 17 {D45R:C -> D44R:G: adjacent_3p downward } 0 18 {D45R:C -> D46R:G: adjacent_5p upward } 0 19 {D46R:G -> D45R:C: adjacent_3p downward } 0 20 {D46R:G -> D47R:U: adjacent_5p upward } 0 21 {D47R:U -> D46R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C27R:C 0 1 C28R:G 0 2 C29R:C 0 3 C30R:U 0 4 D43R:U 0 5 D44R:G 0 6 D45R:C 0 7 D46R:G 0 [Edges] 0 {C27R:C -> C28R:G: adjacent_5p upward } 0 1 {C28R:G -> C27R:C: adjacent_3p downward } 0 2 {C27R:C -> D46R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D46R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C28R:G -> C29R:C: adjacent_5p upward } 0 5 {C29R:C -> C28R:G: adjacent_3p downward } 0 6 {C28R:G -> D45R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D45R:C -> C28R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C28R:G -> D46R:G: outward } 0 9 {D46R:G -> C28R:G: outward } 0 10 {C29R:C -> C30R:U: adjacent_5p upward } 0 11 {C30R:U -> C29R:C: adjacent_3p downward } 0 12 {C29R:C -> D44R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D44R:G -> C29R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C30R:U -> D43R:U: pairing antiparallel cis XVI Ws/Ww } 0 15 {D43R:U -> C30R:U: pairing antiparallel cis XVI Ww/Ws } 0 16 {D43R:U -> D44R:G: adjacent_5p upward } 0 17 {D44R:G -> D43R:U: adjacent_3p downward } 0 18 {D44R:G -> D45R:C: adjacent_5p upward } 0 19 {D45R:C -> D44R:G: adjacent_3p downward } 0 20 {D45R:C -> D46R:G: adjacent_5p upward } 0 21 {D46R:G -> D45R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C28R:G 0 1 C29R:C 0 2 C30R:U 0 3 C31R:U 0 4 D42R:U 0 5 D43R:U 0 6 D44R:G 0 7 D45R:C 0 [Edges] 0 {C28R:G -> C29R:C: adjacent_5p upward } 0 1 {C29R:C -> C28R:G: adjacent_3p downward } 0 2 {C28R:G -> D45R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D45R:C -> C28R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C29R:C -> C30R:U: adjacent_5p upward } 0 5 {C30R:U -> C29R:C: adjacent_3p downward } 0 6 {C29R:C -> D44R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D44R:G -> C29R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C30R:U -> C31R:U: adjacent_5p } 0 9 {C31R:U -> C30R:U: adjacent_3p } 0 10 {C30R:U -> D43R:U: pairing antiparallel cis XVI Ws/Ww } 0 11 {D43R:U -> C30R:U: pairing antiparallel cis XVI Ww/Ws } 0 12 {C31R:U -> D42R:U: pairing antiparallel cis XVI Ww/Ws } 0 13 {D42R:U -> C31R:U: pairing antiparallel cis XVI Ws/Ww } 0 14 {D42R:U -> D43R:U: adjacent_5p } 0 15 {D43R:U -> D42R:U: adjacent_3p } 0 16 {D43R:U -> D44R:G: adjacent_5p upward } 0 17 {D44R:G -> D43R:U: adjacent_3p downward } 0 18 {D44R:G -> D45R:C: adjacent_5p upward } 0 19 {D45R:C -> D44R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C29R:C 0 1 C30R:U 0 2 C31R:U 0 3 C32R:G 0 4 D41R:C 0 5 D42R:U 0 6 D43R:U 0 7 D44R:G 0 [Edges] 0 {C29R:C -> C30R:U: adjacent_5p upward } 0 1 {C30R:U -> C29R:C: adjacent_3p downward } 0 2 {C29R:C -> D44R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D44R:G -> C29R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C30R:U -> C31R:U: adjacent_5p } 0 5 {C31R:U -> C30R:U: adjacent_3p } 0 6 {C30R:U -> D43R:U: pairing antiparallel cis XVI Ws/Ww } 0 7 {D43R:U -> C30R:U: pairing antiparallel cis XVI Ww/Ws } 0 8 {C31R:U -> C32R:G: adjacent_5p upward } 0 9 {C32R:G -> C31R:U: adjacent_3p downward } 0 10 {C31R:U -> D42R:U: pairing antiparallel cis XVI Ww/Ws } 0 11 {D42R:U -> C31R:U: pairing antiparallel cis XVI Ws/Ww } 0 12 {C32R:G -> D41R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D41R:C -> C32R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D41R:C -> D42R:U: adjacent_5p upward } 0 15 {D42R:U -> D41R:C: adjacent_3p downward } 0 16 {D42R:U -> D43R:U: adjacent_5p } 0 17 {D43R:U -> D42R:U: adjacent_3p } 0 18 {D43R:U -> D44R:G: adjacent_5p upward } 0 19 {D44R:G -> D43R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C30R:U 0 1 C31R:U 0 2 C32R:G 0 3 C33R:C 0 4 D40R:G 0 5 D41R:C 0 6 D42R:U 0 7 D43R:U 0 [Edges] 0 {C30R:U -> C31R:U: adjacent_5p } 0 1 {C31R:U -> C30R:U: adjacent_3p } 0 2 {C30R:U -> D43R:U: pairing antiparallel cis XVI Ws/Ww } 0 3 {D43R:U -> C30R:U: pairing antiparallel cis XVI Ww/Ws } 0 4 {C31R:U -> C32R:G: adjacent_5p upward } 0 5 {C32R:G -> C31R:U: adjacent_3p downward } 0 6 {C31R:U -> D42R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {D42R:U -> C31R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {C32R:G -> C33R:C: adjacent_5p upward } 0 9 {C33R:C -> C32R:G: adjacent_3p downward } 0 10 {C32R:G -> D41R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D41R:C -> C32R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C33R:C -> D40R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D40R:G -> C33R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D40R:G -> D41R:C: adjacent_5p upward } 0 15 {D41R:C -> D40R:G: adjacent_3p downward } 0 16 {D41R:C -> D42R:U: adjacent_5p upward } 0 17 {D42R:U -> D41R:C: adjacent_3p downward } 0 18 {D42R:U -> D43R:U: adjacent_5p } 0 19 {D43R:U -> D42R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C31R:U 0 1 C32R:G 0 2 C33R:C 0 3 C34R:G 0 4 D39R:C 0 5 D40R:G 0 6 D41R:C 0 7 D42R:U 0 [Edges] 0 {C31R:U -> C32R:G: adjacent_5p upward } 0 1 {C32R:G -> C31R:U: adjacent_3p downward } 0 2 {C31R:U -> D42R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {D42R:U -> C31R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {C32R:G -> C33R:C: adjacent_5p upward } 0 5 {C33R:C -> C32R:G: adjacent_3p downward } 0 6 {C32R:G -> D41R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D41R:C -> C32R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C33R:C -> C34R:G: adjacent_5p upward } 0 9 {C34R:G -> C33R:C: adjacent_3p downward } 0 10 {C33R:C -> D40R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D40R:G -> C33R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C34R:G -> D39R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D39R:C -> C34R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C34R:G -> D40R:G: outward } 0 15 {D40R:G -> C34R:G: outward } 0 16 {D39R:C -> D40R:G: adjacent_5p upward } 0 17 {D40R:G -> D39R:C: adjacent_3p downward } 0 18 {D40R:G -> D41R:C: adjacent_5p upward } 0 19 {D41R:C -> D40R:G: adjacent_3p downward } 0 20 {D41R:C -> D42R:U: adjacent_5p upward } 0 21 {D42R:U -> D41R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C32R:G 0 1 C33R:C 0 2 C34R:G 0 3 C35R:U 0 4 D38R:G 0 5 D39R:C 0 6 D40R:G 0 7 D41R:C 0 [Edges] 0 {C32R:G -> C33R:C: adjacent_5p upward } 0 1 {C33R:C -> C32R:G: adjacent_3p downward } 0 2 {C32R:G -> D41R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D41R:C -> C32R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C33R:C -> C34R:G: adjacent_5p upward } 0 5 {C34R:G -> C33R:C: adjacent_3p downward } 0 6 {C33R:C -> D40R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D40R:G -> C33R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C34R:G -> C35R:U: adjacent_5p upward } 0 9 {C35R:U -> C34R:G: adjacent_3p downward } 0 10 {C34R:G -> D39R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D39R:C -> C34R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C34R:G -> D40R:G: outward } 0 13 {D40R:G -> C34R:G: outward } 0 14 {C35R:U -> D38R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {D38R:G -> C35R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {D38R:G -> D39R:C: adjacent_5p upward } 0 17 {D39R:C -> D38R:G: adjacent_3p downward } 0 18 {D39R:C -> D40R:G: adjacent_5p upward } 0 19 {D40R:G -> D39R:C: adjacent_3p downward } 0 20 {D40R:G -> D41R:C: adjacent_5p upward } 0 21 {D41R:C -> D40R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:U 0 4 A24R:G 0 5 A25R:C 0 6 A26R:G 0 7 A27R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A26R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A25R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> A26R:G: outward } 0 13 {A26R:G -> A4R:G: outward } 0 14 {A5R:U -> A24R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A24R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A24R:G -> A25R:C: adjacent_5p upward } 0 17 {A25R:C -> A24R:G: adjacent_3p downward } 0 18 {A25R:C -> A26R:G: adjacent_5p } 0 19 {A26R:G -> A25R:C: adjacent_3p } 0 20 {A26R:G -> A27R:C: adjacent_5p upward } 0 21 {A27R:C -> A26R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:U 0 2 A11R:C 0 3 A12R:C 0 4 A17R:G 0 5 A18R:G 0 6 A19R:A 0 7 A20R:A 0 [Edges] 0 {A9R:G -> A10R:U: adjacent_5p upward } 0 1 {A10R:U -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A20R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A20R:A -> A9R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A10R:U -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:U: adjacent_3p downward } 0 6 {A10R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A19R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:C -> A12R:C: adjacent_5p upward } 0 9 {A12R:C -> A11R:C: adjacent_3p downward } 0 10 {A11R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A18R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A17R:G -> A18R:G: adjacent_5p upward } 0 15 {A18R:G -> A17R:G: adjacent_3p downward } 0 16 {A18R:G -> A19R:A: adjacent_5p upward } 0 17 {A19R:A -> A18R:G: adjacent_3p downward } 0 18 {A19R:A -> A20R:A: adjacent_5p upward } 0 19 {A20R:A -> A19R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:U 0 1 A11R:C 0 2 A12R:C 0 3 A13R:G 0 4 A16R:A 0 5 A17R:G 0 6 A18R:G 0 7 A19R:A 0 [Edges] 0 {A10R:U -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:U: adjacent_3p downward } 0 2 {A10R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A19R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A11R:C -> A12R:C: adjacent_5p upward } 0 5 {A12R:C -> A11R:C: adjacent_3p downward } 0 6 {A11R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A18R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:C -> A13R:G: adjacent_5p upward } 0 9 {A13R:G -> A12R:C: adjacent_3p downward } 0 10 {A12R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:G -> A16R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {A16R:A -> A13R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {A16R:A -> A17R:G: adjacent_5p upward } 0 15 {A17R:G -> A16R:A: adjacent_3p downward } 0 16 {A17R:G -> A18R:G: adjacent_5p upward } 0 17 {A18R:G -> A17R:G: adjacent_3p downward } 0 18 {A18R:G -> A19R:A: adjacent_5p upward } 0 19 {A19R:A -> A18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A11R:G 0 1 A12R:U 0 2 A13R:C 0 3 A14R:C 0 4 A23R:A 0 5 A24R:A 0 6 A25R:A 0 7 A26R:C 0 [Edges] 0 {A11R:G -> A12R:U: adjacent_5p } 0 1 {A12R:U -> A11R:G: adjacent_3p } 0 2 {A11R:G -> A13R:C: upward } 0 3 {A13R:C -> A11R:G: downward } 0 4 {A11R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A26R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A12R:U -> A13R:C: adjacent_5p } 0 7 {A13R:C -> A12R:U: adjacent_3p } 0 8 {A13R:C -> A14R:C: adjacent_5p } 0 9 {A14R:C -> A13R:C: adjacent_3p } 0 10 {A13R:C -> A25R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 11 {A25R:A -> A13R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 12 {A14R:C -> A23R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 13 {A23R:A -> A14R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 14 {A23R:A -> A24R:A: adjacent_5p upward } 0 15 {A24R:A -> A23R:A: adjacent_3p downward } 0 16 {A24R:A -> A25R:A: adjacent_5p upward } 0 17 {A25R:A -> A24R:A: adjacent_3p downward } 0 18 {A25R:A -> A26R:C: adjacent_5p upward } 0 19 {A26R:C -> A25R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 2 . . . . 4 1 1 . 6 . . . . . 2 3 7 . 8 . . 10 . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . . 11 . . 17 . 18 7 5 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 '2'4R:G 0 1 '2'5R:G 0 2 '2'6R:C 0 3 '2'7R:U 0 4 '2'28R:A 0 5 '2'29R:G 0 6 '2'30R:C 0 7 '2'31R:C 0 [Edges] 0 {'2'4R:G -> '2'5R:G: adjacent_5p upward } 0 1 {'2'5R:G -> '2'4R:G: adjacent_3p downward } 0 2 {'2'4R:G -> '2'31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'2'31R:C -> '2'4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'2'5R:G -> '2'6R:C: adjacent_5p upward } 0 5 {'2'6R:C -> '2'5R:G: adjacent_3p downward } 0 6 {'2'5R:G -> '2'30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'2'30R:C -> '2'5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'2'6R:C -> '2'7R:U: adjacent_5p upward } 0 9 {'2'7R:U -> '2'6R:C: adjacent_3p downward } 0 10 {'2'6R:C -> '2'29R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'2'29R:G -> '2'6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'2'7R:U -> '2'28R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'2'28R:A -> '2'7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'2'28R:A -> '2'29R:G: adjacent_5p upward } 0 15 {'2'29R:G -> '2'28R:A: adjacent_3p downward } 0 16 {'2'29R:G -> '2'30R:C: adjacent_5p upward } 0 17 {'2'30R:C -> '2'29R:G: adjacent_3p downward } 0 18 {'2'30R:C -> '2'31R:C: adjacent_5p upward } 0 19 {'2'31R:C -> '2'30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '2'5R:G 0 1 '2'6R:C 0 2 '2'7R:U 0 3 '2'8R:C 0 4 '2'27R:G 0 5 '2'28R:A 0 6 '2'29R:G 0 7 '2'30R:C 0 [Edges] 0 {'2'5R:G -> '2'6R:C: adjacent_5p upward } 0 1 {'2'6R:C -> '2'5R:G: adjacent_3p downward } 0 2 {'2'5R:G -> '2'30R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'2'30R:C -> '2'5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'2'6R:C -> '2'7R:U: adjacent_5p upward } 0 5 {'2'7R:U -> '2'6R:C: adjacent_3p downward } 0 6 {'2'6R:C -> '2'29R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'2'29R:G -> '2'6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'2'7R:U -> '2'8R:C: adjacent_5p upward } 0 9 {'2'8R:C -> '2'7R:U: adjacent_3p downward } 0 10 {'2'7R:U -> '2'28R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'2'28R:A -> '2'7R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'2'8R:C -> '2'27R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {'2'27R:G -> '2'8R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {'2'27R:G -> '2'28R:A: adjacent_5p upward } 0 15 {'2'28R:A -> '2'27R:G: adjacent_3p downward } 0 16 {'2'28R:A -> '2'29R:G: adjacent_5p upward } 0 17 {'2'29R:G -> '2'28R:A: adjacent_3p downward } 0 18 {'2'29R:G -> '2'30R:C: adjacent_5p upward } 0 19 {'2'30R:C -> '2'29R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '2'6R:C 0 1 '2'7R:U 0 2 '2'8R:C 0 3 '2'9R:G 0 4 '2'26R:C 0 5 '2'27R:G 0 6 '2'28R:A 0 7 '2'29R:G 0 [Edges] 0 {'2'6R:C -> '2'7R:U: adjacent_5p upward } 0 1 {'2'7R:U -> '2'6R:C: adjacent_3p downward } 0 2 {'2'6R:C -> '2'29R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'2'29R:G -> '2'6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'2'7R:U -> '2'8R:C: adjacent_5p upward } 0 5 {'2'8R:C -> '2'7R:U: adjacent_3p downward } 0 6 {'2'7R:U -> '2'28R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'2'28R:A -> '2'7R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'2'8R:C -> '2'9R:G: adjacent_5p upward } 0 9 {'2'9R:G -> '2'8R:C: adjacent_3p downward } 0 10 {'2'8R:C -> '2'27R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'2'27R:G -> '2'8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'2'9R:G -> '2'26R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {'2'26R:C -> '2'9R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {'2'9R:G -> '2'27R:G: outward } 0 15 {'2'27R:G -> '2'9R:G: outward } 0 16 {'2'26R:C -> '2'27R:G: adjacent_5p upward } 0 17 {'2'27R:G -> '2'26R:C: adjacent_3p downward } 0 18 {'2'27R:G -> '2'28R:A: adjacent_5p upward } 0 19 {'2'28R:A -> '2'27R:G: adjacent_3p downward } 0 20 {'2'28R:A -> '2'29R:G: adjacent_5p upward } 0 21 {'2'29R:G -> '2'28R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 '2'13R:A 0 1 '2'14R:G 0 2 '2'15R:C 0 3 '2'16R:U 0 4 '2'21R:A 0 5 '2'22R:G 0 6 '2'23R:C 0 7 '2'24R:U 0 [Edges] 0 {'2'13R:A -> '2'14R:G: adjacent_5p upward } 0 1 {'2'14R:G -> '2'13R:A: adjacent_3p downward } 0 2 {'2'13R:A -> '2'24R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'2'24R:U -> '2'13R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'2'14R:G -> '2'15R:C: adjacent_5p upward } 0 5 {'2'15R:C -> '2'14R:G: adjacent_3p downward } 0 6 {'2'14R:G -> '2'23R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'2'23R:C -> '2'14R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'2'15R:C -> '2'16R:U: adjacent_5p upward } 0 9 {'2'16R:U -> '2'15R:C: adjacent_3p downward } 0 10 {'2'15R:C -> '2'22R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'2'22R:G -> '2'15R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'2'16R:U -> '2'21R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {'2'21R:A -> '2'16R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {'2'21R:A -> '2'22R:G: adjacent_5p upward } 0 15 {'2'22R:G -> '2'21R:A: adjacent_3p downward } 0 16 {'2'22R:G -> '2'23R:C: adjacent_5p upward } 0 17 {'2'23R:C -> '2'22R:G: adjacent_3p downward } 0 18 {'2'23R:C -> '2'24R:U: adjacent_5p upward } 0 19 {'2'24R:U -> '2'23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 '2'15R:C 0 1 '2'16R:U 0 2 '2'17R:C 0 3 '2'18R:A 0 4 '2'19R:U 0 5 '2'20R:U 0 6 '2'21R:A 0 7 '2'22R:G 0 [Edges] 0 {'2'15R:C -> '2'16R:U: adjacent_5p upward } 0 1 {'2'16R:U -> '2'15R:C: adjacent_3p downward } 0 2 {'2'15R:C -> '2'17R:C: pairing antiparallel trans one_hbond Ws/Hw } 0 3 {'2'17R:C -> '2'15R:C: pairing antiparallel trans one_hbond Hw/Ws } 0 4 {'2'15R:C -> '2'22R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {'2'22R:G -> '2'15R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {'2'16R:U -> '2'17R:C: adjacent_5p pairing antiparallel trans 97 Bs/Hh } 0 7 {'2'17R:C -> '2'16R:U: adjacent_3p pairing antiparallel trans 97 Hh/Bs } 0 8 {'2'16R:U -> '2'21R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {'2'21R:A -> '2'16R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {'2'17R:C -> '2'18R:A: adjacent_5p } 0 11 {'2'18R:A -> '2'17R:C: adjacent_3p } 0 12 {'2'18R:A -> '2'19R:U: adjacent_5p pairing antiparallel cis one_hbond Ss/Hh } 0 13 {'2'19R:U -> '2'18R:A: adjacent_3p pairing antiparallel cis one_hbond Hh/Ss } 0 14 {'2'19R:U -> '2'20R:U: adjacent_5p } 0 15 {'2'20R:U -> '2'19R:U: adjacent_3p } 0 16 {'2'20R:U -> '2'21R:A: adjacent_5p } 0 17 {'2'21R:A -> '2'20R:U: adjacent_3p } 0 18 {'2'21R:A -> '2'22R:G: adjacent_5p upward } 0 19 {'2'22R:G -> '2'21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 2 . . . . 4 1 1 . 6 . . . 8 . 2 3 7 . 10 . . . . 3 . . 11 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 9 . . . 17 . 18 7 5 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B4R:C 0 1 B5R:A 0 2 B6R:C 0 3 B7R:G 0 4 B17R:C 0 5 B18R:G 0 6 B19R:U 0 7 B20R:G 0 [Edges] 0 {B4R:C -> B5R:A: adjacent_5p upward } 0 1 {B5R:A -> B4R:C: adjacent_3p downward } 0 2 {B4R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B20R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B5R:A -> B6R:C: adjacent_5p upward } 0 5 {B6R:C -> B5R:A: adjacent_3p downward } 0 6 {B5R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B19R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B5R:A -> B20R:G: outward } 0 9 {B20R:G -> B5R:A: outward } 0 10 {B6R:C -> B7R:G: adjacent_5p upward } 0 11 {B7R:G -> B6R:C: adjacent_3p downward } 0 12 {B6R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B18R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B7R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B17R:C -> B7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B7R:G -> B18R:G: outward } 0 17 {B18R:G -> B7R:G: outward } 0 18 {B17R:C -> B18R:G: adjacent_5p } 0 19 {B18R:G -> B17R:C: adjacent_3p } 0 20 {B18R:G -> B19R:U: adjacent_5p upward } 0 21 {B19R:U -> B18R:G: adjacent_3p downward } 0 22 {B19R:U -> B20R:G: adjacent_5p upward } 0 23 {B20R:G -> B19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 B5R:A 0 1 B6R:C 0 2 B7R:G 0 3 B8R:G 0 4 B16R:C 0 5 B17R:C 0 6 B18R:G 0 7 B19R:U 0 [Edges] 0 {B5R:A -> B6R:C: adjacent_5p upward } 0 1 {B6R:C -> B5R:A: adjacent_3p downward } 0 2 {B5R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B19R:U -> B5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B6R:C -> B7R:G: adjacent_5p upward } 0 5 {B7R:G -> B6R:C: adjacent_3p downward } 0 6 {B6R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B18R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B7R:G -> B8R:G: adjacent_5p upward } 0 9 {B8R:G -> B7R:G: adjacent_3p downward } 0 10 {B7R:G -> B17R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B17R:C -> B7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B7R:G -> B18R:G: outward } 0 13 {B18R:G -> B7R:G: outward } 0 14 {B8R:G -> B16R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B16R:C -> B8R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B16R:C -> B17R:C: adjacent_5p } 0 17 {B17R:C -> B16R:C: adjacent_3p } 0 18 {B17R:C -> B18R:G: adjacent_5p } 0 19 {B18R:G -> B17R:C: adjacent_3p } 0 20 {B18R:G -> B19R:U: adjacent_5p upward } 0 21 {B19R:U -> B18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:A 0 3 A5R:U 0 4 A39R:G 0 5 A40R:U 0 6 A41R:C 0 7 A42R:C 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A42R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A42R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A41R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A41R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A40R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A40R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:U -> A39R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A39R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A39R:G -> A40R:U: adjacent_5p upward } 0 15 {A40R:U -> A39R:G: adjacent_3p downward } 0 16 {A40R:U -> A41R:C: adjacent_5p upward } 0 17 {A41R:C -> A40R:U: adjacent_3p downward } 0 18 {A41R:C -> A42R:C: adjacent_5p } 0 19 {A42R:C -> A41R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:G 0 2 A10R:A 0 3 A11R:A 0 4 A32R:U 0 5 A33R:U 0 6 A34R:C 0 7 A35R:C 0 [Edges] 0 {A8R:G -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> A35R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A35R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:G -> A10R:A: adjacent_5p upward } 0 5 {A10R:A -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A34R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:A -> A11R:A: adjacent_5p upward } 0 9 {A11R:A -> A10R:A: adjacent_3p downward } 0 10 {A10R:A -> A33R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A33R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A11R:A -> A32R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A32R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A32R:U -> A33R:U: adjacent_5p } 0 15 {A33R:U -> A32R:U: adjacent_3p } 0 16 {A33R:U -> A34R:C: adjacent_5p } 0 17 {A34R:C -> A33R:U: adjacent_3p } 0 18 {A34R:C -> A35R:C: adjacent_5p } 0 19 {A35R:C -> A34R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:A 0 2 A11R:A 0 3 A12R:G 0 4 A31R:C 0 5 A32R:U 0 6 A33R:U 0 7 A34R:C 0 [Edges] 0 {A9R:G -> A10R:A: adjacent_5p upward } 0 1 {A10R:A -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A34R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:A -> A11R:A: adjacent_5p upward } 0 5 {A11R:A -> A10R:A: adjacent_3p downward } 0 6 {A10R:A -> A33R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A33R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:A -> A12R:G: adjacent_5p upward } 0 9 {A12R:G -> A11R:A: adjacent_3p downward } 0 10 {A11R:A -> A32R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A32R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A12R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A31R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A31R:C -> A32R:U: adjacent_5p upward } 0 15 {A32R:U -> A31R:C: adjacent_3p downward } 0 16 {A32R:U -> A33R:U: adjacent_5p } 0 17 {A33R:U -> A32R:U: adjacent_3p } 0 18 {A33R:U -> A34R:C: adjacent_5p } 0 19 {A34R:C -> A33R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:A 0 1 A11R:A 0 2 A12R:G 0 3 A13R:A 0 4 A30R:U 0 5 A31R:C 0 6 A32R:U 0 7 A33R:U 0 [Edges] 0 {A10R:A -> A11R:A: adjacent_5p upward } 0 1 {A11R:A -> A10R:A: adjacent_3p downward } 0 2 {A10R:A -> A33R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A33R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A11R:A -> A12R:G: adjacent_5p upward } 0 5 {A12R:G -> A11R:A: adjacent_3p downward } 0 6 {A11R:A -> A32R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A32R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A12R:G -> A13R:A: adjacent_5p upward } 0 9 {A13R:A -> A12R:G: adjacent_3p downward } 0 10 {A12R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A31R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:A -> A30R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A30R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A30R:U -> A31R:C: adjacent_5p upward } 0 15 {A31R:C -> A30R:U: adjacent_3p downward } 0 16 {A31R:C -> A32R:U: adjacent_5p upward } 0 17 {A32R:U -> A31R:C: adjacent_3p downward } 0 18 {A32R:U -> A33R:U: adjacent_5p } 0 19 {A33R:U -> A32R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:A 0 1 A12R:G 0 2 A13R:A 0 3 A14R:A 0 4 A29R:U 0 5 A30R:U 0 6 A31R:C 0 7 A32R:U 0 [Edges] 0 {A11R:A -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:A: adjacent_3p downward } 0 2 {A11R:A -> A32R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A32R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A12R:G -> A13R:A: adjacent_5p upward } 0 5 {A13R:A -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A31R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:A -> A14R:A: adjacent_5p } 0 9 {A14R:A -> A13R:A: adjacent_3p } 0 10 {A13R:A -> A30R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A30R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A14R:A -> A29R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A29R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A29R:U -> A30R:U: adjacent_5p } 0 15 {A30R:U -> A29R:U: adjacent_3p } 0 16 {A30R:U -> A31R:C: adjacent_5p upward } 0 17 {A31R:C -> A30R:U: adjacent_3p downward } 0 18 {A31R:C -> A32R:U: adjacent_5p upward } 0 19 {A32R:U -> A31R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:A 0 2 A14R:A 0 3 A15R:C 0 4 A28R:G 0 5 A29R:U 0 6 A30R:U 0 7 A31R:C 0 [Edges] 0 {A12R:G -> A13R:A: adjacent_5p upward } 0 1 {A13R:A -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A31R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:A -> A14R:A: adjacent_5p } 0 5 {A14R:A -> A13R:A: adjacent_3p } 0 6 {A13R:A -> A30R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A30R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A14R:A -> A15R:C: adjacent_5p upward } 0 9 {A15R:C -> A14R:A: adjacent_3p downward } 0 10 {A14R:A -> A29R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A29R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A15R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A28R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A28R:G -> A29R:U: adjacent_5p upward } 0 15 {A29R:U -> A28R:G: adjacent_3p downward } 0 16 {A29R:U -> A30R:U: adjacent_5p } 0 17 {A30R:U -> A29R:U: adjacent_3p } 0 18 {A30R:U -> A31R:C: adjacent_5p upward } 0 19 {A31R:C -> A30R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A13R:A 0 1 A14R:A 0 2 A15R:C 0 3 A16R:C 0 4 A27R:G 0 5 A28R:G 0 6 A29R:U 0 7 A30R:U 0 [Edges] 0 {A13R:A -> A14R:A: adjacent_5p } 0 1 {A14R:A -> A13R:A: adjacent_3p } 0 2 {A13R:A -> A30R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A30R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A14R:A -> A15R:C: adjacent_5p upward } 0 5 {A15R:C -> A14R:A: adjacent_3p downward } 0 6 {A14R:A -> A29R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A29R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A15R:C -> A16R:C: adjacent_5p upward } 0 9 {A16R:C -> A15R:C: adjacent_3p downward } 0 10 {A15R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A28R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A16R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A27R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A27R:G -> A28R:G: adjacent_5p } 0 15 {A28R:G -> A27R:G: adjacent_3p } 0 16 {A28R:G -> A29R:U: adjacent_5p upward } 0 17 {A29R:U -> A28R:G: adjacent_3p downward } 0 18 {A29R:U -> A30R:U: adjacent_5p } 0 19 {A30R:U -> A29R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A14R:A 0 1 A15R:C 0 2 A16R:C 0 3 A17R:G 0 4 A26R:U 0 5 A27R:G 0 6 A28R:G 0 7 A29R:U 0 [Edges] 0 {A14R:A -> A15R:C: adjacent_5p upward } 0 1 {A15R:C -> A14R:A: adjacent_3p downward } 0 2 {A14R:A -> A29R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A29R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A15R:C -> A16R:C: adjacent_5p upward } 0 5 {A16R:C -> A15R:C: adjacent_3p downward } 0 6 {A15R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A28R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A16R:C -> A17R:G: adjacent_5p } 0 9 {A17R:G -> A16R:C: adjacent_3p } 0 10 {A16R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A27R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A17R:G -> A26R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A26R:U -> A17R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A26R:U -> A27R:G: adjacent_5p upward } 0 15 {A27R:G -> A26R:U: adjacent_3p downward } 0 16 {A27R:G -> A28R:G: adjacent_5p } 0 17 {A28R:G -> A27R:G: adjacent_3p } 0 18 {A28R:G -> A29R:U: adjacent_5p upward } 0 19 {A29R:U -> A28R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A15R:C 0 1 A16R:C 0 2 A17R:G 0 3 A18R:G 0 4 A25R:U 0 5 A26R:U 0 6 A27R:G 0 7 A28R:G 0 [Edges] 0 {A15R:C -> A16R:C: adjacent_5p upward } 0 1 {A16R:C -> A15R:C: adjacent_3p downward } 0 2 {A15R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A28R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A16R:C -> A17R:G: adjacent_5p } 0 5 {A17R:G -> A16R:C: adjacent_3p } 0 6 {A16R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A27R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A17R:G -> A18R:G: adjacent_5p upward } 0 9 {A18R:G -> A17R:G: adjacent_3p downward } 0 10 {A17R:G -> A26R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A26R:U -> A17R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A18R:G -> A25R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A25R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A25R:U -> A26R:U: adjacent_5p } 0 15 {A26R:U -> A25R:U: adjacent_3p } 0 16 {A26R:U -> A27R:G: adjacent_5p upward } 0 17 {A27R:G -> A26R:U: adjacent_3p downward } 0 18 {A27R:G -> A28R:G: adjacent_5p } 0 19 {A28R:G -> A27R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A16R:C 0 1 A17R:G 0 2 A18R:G 0 3 A19R:G 0 4 A24R:C 0 5 A25R:U 0 6 A26R:U 0 7 A27R:G 0 [Edges] 0 {A16R:C -> A17R:G: adjacent_5p } 0 1 {A17R:G -> A16R:C: adjacent_3p } 0 2 {A16R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A17R:G -> A18R:G: adjacent_5p upward } 0 5 {A18R:G -> A17R:G: adjacent_3p downward } 0 6 {A17R:G -> A26R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A26R:U -> A17R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A18R:G -> A19R:G: adjacent_5p upward } 0 9 {A19R:G -> A18R:G: adjacent_3p downward } 0 10 {A18R:G -> A25R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A25R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A19R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A24R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A24R:C -> A25R:U: adjacent_5p upward } 0 15 {A25R:U -> A24R:C: adjacent_3p downward } 0 16 {A25R:U -> A26R:U: adjacent_5p } 0 17 {A26R:U -> A25R:U: adjacent_3p } 0 18 {A26R:U -> A27R:G: adjacent_5p upward } 0 19 {A27R:G -> A26R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A17R:G 0 1 A18R:G 0 2 A19R:G 0 3 A20R:G 0 4 A23R:A 0 5 A24R:C 0 6 A25R:U 0 7 A26R:U 0 [Edges] 0 {A17R:G -> A18R:G: adjacent_5p upward } 0 1 {A18R:G -> A17R:G: adjacent_3p downward } 0 2 {A17R:G -> A26R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A26R:U -> A17R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A18R:G -> A19R:G: adjacent_5p upward } 0 5 {A19R:G -> A18R:G: adjacent_3p downward } 0 6 {A18R:G -> A25R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A25R:U -> A18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A19R:G -> A20R:G: adjacent_5p upward } 0 9 {A20R:G -> A19R:G: adjacent_3p downward } 0 10 {A19R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A24R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A20R:G -> A23R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {A23R:A -> A20R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {A23R:A -> A24R:C: adjacent_5p upward } 0 15 {A24R:C -> A23R:A: adjacent_3p downward } 0 16 {A24R:C -> A25R:U: adjacent_5p upward } 0 17 {A25R:U -> A24R:C: adjacent_3p downward } 0 18 {A25R:U -> A26R:U: adjacent_5p } 0 19 {A26R:U -> A25R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B45R:G 0 1 B46R:G 0 2 B47R:A 0 3 B48R:U 0 4 B82R:G 0 5 B83R:U 0 6 B84R:C 0 7 B85R:C 0 [Edges] 0 {B45R:G -> B46R:G: adjacent_5p upward } 0 1 {B46R:G -> B45R:G: adjacent_3p downward } 0 2 {B45R:G -> B85R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B85R:C -> B45R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B46R:G -> B47R:A: adjacent_5p upward } 0 5 {B47R:A -> B46R:G: adjacent_3p downward } 0 6 {B46R:G -> B84R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B84R:C -> B46R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B47R:A -> B48R:U: adjacent_5p upward } 0 9 {B48R:U -> B47R:A: adjacent_3p downward } 0 10 {B47R:A -> B83R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B83R:U -> B47R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B48R:U -> B82R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {B82R:G -> B48R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {B82R:G -> B83R:U: adjacent_5p upward } 0 15 {B83R:U -> B82R:G: adjacent_3p downward } 0 16 {B83R:U -> B84R:C: adjacent_5p upward } 0 17 {B84R:C -> B83R:U: adjacent_3p downward } 0 18 {B84R:C -> B85R:C: adjacent_5p upward } 0 19 {B85R:C -> B84R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B51R:G 0 1 B52R:G 0 2 B53R:A 0 3 B54R:A 0 4 B75R:U 0 5 B76R:U 0 6 B77R:C 0 7 B78R:C 0 [Edges] 0 {B51R:G -> B52R:G: adjacent_5p upward } 0 1 {B52R:G -> B51R:G: adjacent_3p downward } 0 2 {B51R:G -> B78R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B78R:C -> B51R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B52R:G -> B53R:A: adjacent_5p upward } 0 5 {B53R:A -> B52R:G: adjacent_3p downward } 0 6 {B52R:G -> B77R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B77R:C -> B52R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B53R:A -> B54R:A: adjacent_5p upward } 0 9 {B54R:A -> B53R:A: adjacent_3p downward } 0 10 {B53R:A -> B76R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B76R:U -> B53R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B54R:A -> B75R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B75R:U -> B54R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B75R:U -> B76R:U: adjacent_5p } 0 15 {B76R:U -> B75R:U: adjacent_3p } 0 16 {B76R:U -> B77R:C: adjacent_5p upward } 0 17 {B77R:C -> B76R:U: adjacent_3p downward } 0 18 {B77R:C -> B78R:C: adjacent_5p } 0 19 {B78R:C -> B77R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B52R:G 0 1 B53R:A 0 2 B54R:A 0 3 B55R:G 0 4 B74R:C 0 5 B75R:U 0 6 B76R:U 0 7 B77R:C 0 [Edges] 0 {B52R:G -> B53R:A: adjacent_5p upward } 0 1 {B53R:A -> B52R:G: adjacent_3p downward } 0 2 {B52R:G -> B77R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B77R:C -> B52R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B53R:A -> B54R:A: adjacent_5p upward } 0 5 {B54R:A -> B53R:A: adjacent_3p downward } 0 6 {B53R:A -> B76R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B76R:U -> B53R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B54R:A -> B55R:G: adjacent_5p upward } 0 9 {B55R:G -> B54R:A: adjacent_3p downward } 0 10 {B54R:A -> B75R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B75R:U -> B54R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B55R:G -> B74R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B74R:C -> B55R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B74R:C -> B75R:U: adjacent_5p upward } 0 15 {B75R:U -> B74R:C: adjacent_3p downward } 0 16 {B75R:U -> B76R:U: adjacent_5p } 0 17 {B76R:U -> B75R:U: adjacent_3p } 0 18 {B76R:U -> B77R:C: adjacent_5p upward } 0 19 {B77R:C -> B76R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B53R:A 0 1 B54R:A 0 2 B55R:G 0 3 B56R:A 0 4 B73R:U 0 5 B74R:C 0 6 B75R:U 0 7 B76R:U 0 [Edges] 0 {B53R:A -> B54R:A: adjacent_5p upward } 0 1 {B54R:A -> B53R:A: adjacent_3p downward } 0 2 {B53R:A -> B76R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B76R:U -> B53R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B54R:A -> B55R:G: adjacent_5p upward } 0 5 {B55R:G -> B54R:A: adjacent_3p downward } 0 6 {B54R:A -> B75R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B75R:U -> B54R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B55R:G -> B56R:A: adjacent_5p upward } 0 9 {B56R:A -> B55R:G: adjacent_3p downward } 0 10 {B55R:G -> B74R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B74R:C -> B55R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B56R:A -> B73R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B73R:U -> B56R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B73R:U -> B74R:C: adjacent_5p upward } 0 15 {B74R:C -> B73R:U: adjacent_3p downward } 0 16 {B74R:C -> B75R:U: adjacent_5p upward } 0 17 {B75R:U -> B74R:C: adjacent_3p downward } 0 18 {B75R:U -> B76R:U: adjacent_5p } 0 19 {B76R:U -> B75R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B54R:A 0 1 B55R:G 0 2 B56R:A 0 3 B57R:A 0 4 B72R:U 0 5 B73R:U 0 6 B74R:C 0 7 B75R:U 0 [Edges] 0 {B54R:A -> B55R:G: adjacent_5p upward } 0 1 {B55R:G -> B54R:A: adjacent_3p downward } 0 2 {B54R:A -> B75R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B75R:U -> B54R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B55R:G -> B56R:A: adjacent_5p upward } 0 5 {B56R:A -> B55R:G: adjacent_3p downward } 0 6 {B55R:G -> B74R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B74R:C -> B55R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B56R:A -> B57R:A: adjacent_5p upward } 0 9 {B57R:A -> B56R:A: adjacent_3p downward } 0 10 {B56R:A -> B73R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B73R:U -> B56R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B57R:A -> B72R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B72R:U -> B57R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {B72R:U -> B73R:U: adjacent_5p } 0 15 {B73R:U -> B72R:U: adjacent_3p } 0 16 {B73R:U -> B74R:C: adjacent_5p upward } 0 17 {B74R:C -> B73R:U: adjacent_3p downward } 0 18 {B74R:C -> B75R:U: adjacent_5p upward } 0 19 {B75R:U -> B74R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B55R:G 0 1 B56R:A 0 2 B57R:A 0 3 B58R:C 0 4 B71R:G 0 5 B72R:U 0 6 B73R:U 0 7 B74R:C 0 [Edges] 0 {B55R:G -> B56R:A: adjacent_5p upward } 0 1 {B56R:A -> B55R:G: adjacent_3p downward } 0 2 {B55R:G -> B74R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B74R:C -> B55R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B56R:A -> B57R:A: adjacent_5p upward } 0 5 {B57R:A -> B56R:A: adjacent_3p downward } 0 6 {B56R:A -> B73R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B73R:U -> B56R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B57R:A -> B58R:C: adjacent_5p upward } 0 9 {B58R:C -> B57R:A: adjacent_3p downward } 0 10 {B57R:A -> B72R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B72R:U -> B57R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B58R:C -> B71R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B71R:G -> B58R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B71R:G -> B72R:U: adjacent_5p upward } 0 15 {B72R:U -> B71R:G: adjacent_3p downward } 0 16 {B72R:U -> B73R:U: adjacent_5p } 0 17 {B73R:U -> B72R:U: adjacent_3p } 0 18 {B73R:U -> B74R:C: adjacent_5p upward } 0 19 {B74R:C -> B73R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B56R:A 0 1 B57R:A 0 2 B58R:C 0 3 B59R:C 0 4 B70R:G 0 5 B71R:G 0 6 B72R:U 0 7 B73R:U 0 [Edges] 0 {B56R:A -> B57R:A: adjacent_5p upward } 0 1 {B57R:A -> B56R:A: adjacent_3p downward } 0 2 {B56R:A -> B73R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B73R:U -> B56R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B57R:A -> B58R:C: adjacent_5p upward } 0 5 {B58R:C -> B57R:A: adjacent_3p downward } 0 6 {B57R:A -> B72R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B72R:U -> B57R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B58R:C -> B59R:C: adjacent_5p upward } 0 9 {B59R:C -> B58R:C: adjacent_3p downward } 0 10 {B58R:C -> B71R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B71R:G -> B58R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B59R:C -> B70R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B70R:G -> B59R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B70R:G -> B71R:G: adjacent_5p } 0 15 {B71R:G -> B70R:G: adjacent_3p } 0 16 {B71R:G -> B72R:U: adjacent_5p upward } 0 17 {B72R:U -> B71R:G: adjacent_3p downward } 0 18 {B72R:U -> B73R:U: adjacent_5p } 0 19 {B73R:U -> B72R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B57R:A 0 1 B58R:C 0 2 B59R:C 0 3 B60R:G 0 4 B69R:U 0 5 B70R:G 0 6 B71R:G 0 7 B72R:U 0 [Edges] 0 {B57R:A -> B58R:C: adjacent_5p upward } 0 1 {B58R:C -> B57R:A: adjacent_3p downward } 0 2 {B57R:A -> B72R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B72R:U -> B57R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B58R:C -> B59R:C: adjacent_5p upward } 0 5 {B59R:C -> B58R:C: adjacent_3p downward } 0 6 {B58R:C -> B71R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B71R:G -> B58R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B59R:C -> B60R:G: adjacent_5p } 0 9 {B60R:G -> B59R:C: adjacent_3p } 0 10 {B59R:C -> B70R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B70R:G -> B59R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B60R:G -> B69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B69R:U -> B60R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {B69R:U -> B70R:G: adjacent_5p upward } 0 15 {B70R:G -> B69R:U: adjacent_3p downward } 0 16 {B70R:G -> B71R:G: adjacent_5p } 0 17 {B71R:G -> B70R:G: adjacent_3p } 0 18 {B71R:G -> B72R:U: adjacent_5p upward } 0 19 {B72R:U -> B71R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B58R:C 0 1 B59R:C 0 2 B60R:G 0 3 B61R:G 0 4 B68R:U 0 5 B69R:U 0 6 B70R:G 0 7 B71R:G 0 [Edges] 0 {B58R:C -> B59R:C: adjacent_5p upward } 0 1 {B59R:C -> B58R:C: adjacent_3p downward } 0 2 {B58R:C -> B71R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B71R:G -> B58R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B59R:C -> B60R:G: adjacent_5p } 0 5 {B60R:G -> B59R:C: adjacent_3p } 0 6 {B59R:C -> B70R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B70R:G -> B59R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B60R:G -> B61R:G: adjacent_5p upward } 0 9 {B61R:G -> B60R:G: adjacent_3p downward } 0 10 {B60R:G -> B69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B69R:U -> B60R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {B61R:G -> B68R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B68R:U -> B61R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {B68R:U -> B69R:U: adjacent_5p upward } 0 15 {B69R:U -> B68R:U: adjacent_3p downward } 0 16 {B69R:U -> B70R:G: adjacent_5p upward } 0 17 {B70R:G -> B69R:U: adjacent_3p downward } 0 18 {B70R:G -> B71R:G: adjacent_5p } 0 19 {B71R:G -> B70R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B59R:C 0 1 B60R:G 0 2 B61R:G 0 3 B62R:G 0 4 B67R:C 0 5 B68R:U 0 6 B69R:U 0 7 B70R:G 0 [Edges] 0 {B59R:C -> B60R:G: adjacent_5p } 0 1 {B60R:G -> B59R:C: adjacent_3p } 0 2 {B59R:C -> B70R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B70R:G -> B59R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B60R:G -> B61R:G: adjacent_5p upward } 0 5 {B61R:G -> B60R:G: adjacent_3p downward } 0 6 {B60R:G -> B69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B69R:U -> B60R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B61R:G -> B62R:G: adjacent_5p upward } 0 9 {B62R:G -> B61R:G: adjacent_3p downward } 0 10 {B61R:G -> B68R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B68R:U -> B61R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {B62R:G -> B67R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B67R:C -> B62R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B67R:C -> B68R:U: adjacent_5p upward } 0 15 {B68R:U -> B67R:C: adjacent_3p downward } 0 16 {B68R:U -> B69R:U: adjacent_5p upward } 0 17 {B69R:U -> B68R:U: adjacent_3p downward } 0 18 {B69R:U -> B70R:G: adjacent_5p upward } 0 19 {B70R:G -> B69R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B60R:G 0 1 B61R:G 0 2 B62R:G 0 3 B63R:G 0 4 B66R:A 0 5 B67R:C 0 6 B68R:U 0 7 B69R:U 0 [Edges] 0 {B60R:G -> B61R:G: adjacent_5p upward } 0 1 {B61R:G -> B60R:G: adjacent_3p downward } 0 2 {B60R:G -> B69R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B69R:U -> B60R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B61R:G -> B62R:G: adjacent_5p upward } 0 5 {B62R:G -> B61R:G: adjacent_3p downward } 0 6 {B61R:G -> B68R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B68R:U -> B61R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B62R:G -> B63R:G: adjacent_5p upward } 0 9 {B63R:G -> B62R:G: adjacent_3p downward } 0 10 {B62R:G -> B67R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B67R:C -> B62R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B63R:G -> B66R:A: pairing antiparallel trans XI Ss/Hh } 0 13 {B66R:A -> B63R:G: pairing antiparallel trans XI Hh/Ss } 0 14 {B66R:A -> B67R:C: adjacent_5p upward } 0 15 {B67R:C -> B66R:A: adjacent_3p downward } 0 16 {B67R:C -> B68R:U: adjacent_5p upward } 0 17 {B68R:U -> B67R:C: adjacent_3p downward } 0 18 {B68R:U -> B69R:U: adjacent_5p upward } 0 19 {B69R:U -> B68R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:G 0 2 A3R:G 0 3 A4R:A 0 4 A38R:U 0 5 A39R:C 0 6 A40R:C 0 7 A41R:C 0 [Edges] 0 {A1R:G -> A2R:G: adjacent_5p } 0 1 {A2R:G -> A1R:G: adjacent_3p } 0 2 {A1R:G -> A41R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A41R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:G -> A3R:G: adjacent_5p upward } 0 5 {A3R:G -> A2R:G: adjacent_3p downward } 0 6 {A2R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A40R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:G -> A4R:A: adjacent_5p upward } 0 9 {A4R:A -> A3R:G: adjacent_3p downward } 0 10 {A3R:G -> A39R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A39R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:A -> A38R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A38R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A38R:U -> A39R:C: adjacent_5p } 0 15 {A39R:C -> A38R:U: adjacent_3p } 0 16 {A39R:C -> A40R:C: adjacent_5p } 0 17 {A40R:C -> A39R:C: adjacent_3p } 0 18 {A40R:C -> A41R:C: adjacent_5p upward } 0 19 {A41R:C -> A40R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:A 0 3 A5R:C 0 4 A37R:G 0 5 A38R:U 0 6 A39R:C 0 7 A40R:C 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A40R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A39R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A39R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A5R:C: adjacent_5p } 0 9 {A5R:C -> A4R:A: adjacent_3p } 0 10 {A4R:A -> A38R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A38R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:C -> A37R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A37R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A37R:G -> A38R:U: adjacent_5p upward } 0 15 {A38R:U -> A37R:G: adjacent_3p downward } 0 16 {A38R:U -> A39R:C: adjacent_5p } 0 17 {A39R:C -> A38R:U: adjacent_3p } 0 18 {A39R:C -> A40R:C: adjacent_5p } 0 19 {A40R:C -> A39R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:A 0 2 A5R:C 0 3 A6R:G 0 4 A36R:C 0 5 A37R:G 0 6 A38R:U 0 7 A39R:C 0 [Edges] 0 {A3R:G -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A39R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A39R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:C: adjacent_5p } 0 5 {A5R:C -> A4R:A: adjacent_3p } 0 6 {A4R:A -> A38R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A38R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:C -> A6R:G: adjacent_5p upward } 0 9 {A6R:G -> A5R:C: adjacent_3p downward } 0 10 {A5R:C -> A37R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A37R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:G -> A36R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A36R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A36R:C -> A37R:G: adjacent_5p } 0 15 {A37R:G -> A36R:C: adjacent_3p } 0 16 {A37R:G -> A38R:U: adjacent_5p upward } 0 17 {A38R:U -> A37R:G: adjacent_3p downward } 0 18 {A38R:U -> A39R:C: adjacent_5p } 0 19 {A39R:C -> A38R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:C 0 2 A6R:G 0 3 A7R:A 0 4 A35R:A 0 5 A36R:C 0 6 A37R:G 0 7 A38R:U 0 [Edges] 0 {A4R:A -> A5R:C: adjacent_5p } 0 1 {A5R:C -> A4R:A: adjacent_3p } 0 2 {A4R:A -> A38R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A38R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:C -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> A37R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A37R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> A7R:A: adjacent_5p upward } 0 9 {A7R:A -> A6R:G: adjacent_3p downward } 0 10 {A6R:G -> A36R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A36R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:A -> A35R:A: pairing parallel trans one_hbond Bs/Ww } 0 13 {A35R:A -> A7R:A: pairing parallel trans one_hbond Ww/Bs } 0 14 {A35R:A -> A36R:C: adjacent_5p outward } 0 15 {A36R:C -> A35R:A: adjacent_3p outward } 0 16 {A36R:C -> A37R:G: adjacent_5p } 0 17 {A37R:G -> A36R:C: adjacent_3p } 0 18 {A37R:G -> A38R:U: adjacent_5p upward } 0 19 {A38R:U -> A37R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A16R:G 0 1 A17R:G 0 2 A18R:C 0 3 A19R:G 0 4 A26R:C 0 5 A27R:G 0 6 A28R:U 0 7 A29R:G 0 [Edges] 0 {A16R:G -> A17R:G: adjacent_5p upward } 0 1 {A17R:G -> A16R:G: adjacent_3p downward } 0 2 {A16R:G -> A29R:G: pairing parallel cis one_hbond Ww/Hw } 0 3 {A29R:G -> A16R:G: pairing parallel cis one_hbond Hw/Ww } 0 4 {A17R:G -> A18R:C: adjacent_5p } 0 5 {A18R:C -> A17R:G: adjacent_3p } 0 6 {A17R:G -> A28R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A28R:U -> A17R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A18R:C -> A19R:G: adjacent_5p upward } 0 9 {A19R:G -> A18R:C: adjacent_3p downward } 0 10 {A18R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A27R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A19R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A26R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A19R:G -> A27R:G: outward } 0 15 {A27R:G -> A19R:G: outward } 0 16 {A26R:C -> A27R:G: adjacent_5p upward } 0 17 {A27R:G -> A26R:C: adjacent_3p downward } 0 18 {A27R:G -> A28R:U: adjacent_5p upward } 0 19 {A28R:U -> A27R:G: adjacent_3p downward } 0 20 {A28R:U -> A29R:G: adjacent_5p } 0 21 {A29R:G -> A28R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A17R:G 0 1 A18R:C 0 2 A19R:G 0 3 A20R:C 0 4 A25R:G 0 5 A26R:C 0 6 A27R:G 0 7 A28R:U 0 [Edges] 0 {A17R:G -> A18R:C: adjacent_5p } 0 1 {A18R:C -> A17R:G: adjacent_3p } 0 2 {A17R:G -> A28R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A28R:U -> A17R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A18R:C -> A19R:G: adjacent_5p upward } 0 5 {A19R:G -> A18R:C: adjacent_3p downward } 0 6 {A18R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A27R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A19R:G -> A20R:C: adjacent_5p upward } 0 9 {A20R:C -> A19R:G: adjacent_3p downward } 0 10 {A19R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A26R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A19R:G -> A27R:G: outward } 0 13 {A27R:G -> A19R:G: outward } 0 14 {A20R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A25R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A25R:G -> A26R:C: adjacent_5p upward } 0 17 {A26R:C -> A25R:G: adjacent_3p downward } 0 18 {A26R:C -> A27R:G: adjacent_5p upward } 0 19 {A27R:G -> A26R:C: adjacent_3p downward } 0 20 {A27R:G -> A28R:U: adjacent_5p upward } 0 21 {A28R:U -> A27R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A18R:C 0 1 A19R:G 0 2 A20R:C 0 3 A21R:U 0 4 A24R:G 0 5 A25R:G 0 6 A26R:C 0 7 A27R:G 0 [Edges] 0 {A18R:C -> A19R:G: adjacent_5p upward } 0 1 {A19R:G -> A18R:C: adjacent_3p downward } 0 2 {A18R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A27R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A19R:G -> A20R:C: adjacent_5p upward } 0 5 {A20R:C -> A19R:G: adjacent_3p downward } 0 6 {A19R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A26R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A19R:G -> A27R:G: outward } 0 9 {A27R:G -> A19R:G: outward } 0 10 {A20R:C -> A21R:U: adjacent_5p } 0 11 {A21R:U -> A20R:C: adjacent_3p } 0 12 {A20R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A25R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A21R:U -> A24R:G: pairing parallel trans one_hbond Bs/Ww } 0 15 {A24R:G -> A21R:U: pairing parallel trans one_hbond Ww/Bs } 0 16 {A24R:G -> A25R:G: adjacent_5p outward } 0 17 {A25R:G -> A24R:G: adjacent_3p outward } 0 18 {A25R:G -> A26R:C: adjacent_5p upward } 0 19 {A26R:C -> A25R:G: adjacent_3p downward } 0 20 {A26R:C -> A27R:G: adjacent_5p upward } 0 21 {A27R:G -> A26R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C8R:C 0 1 C9R:G 0 2 C10R:C 0 3 C11R:G 0 4 D8R:C 0 5 D9R:G 0 6 D10R:C 0 7 D11R:G 0 [Edges] 0 {C8R:C -> C9R:G: adjacent_5p upward } 0 1 {C9R:G -> C8R:C: adjacent_3p downward } 0 2 {C8R:C -> D11R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D11R:G -> C8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C9R:G -> C10R:C: adjacent_5p upward } 0 5 {C10R:C -> C9R:G: adjacent_3p downward } 0 6 {C9R:G -> D10R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D10R:C -> C9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C9R:G -> D11R:G: outward } 0 9 {D11R:G -> C9R:G: outward } 0 10 {C10R:C -> C11R:G: adjacent_5p upward } 0 11 {C11R:G -> C10R:C: adjacent_3p downward } 0 12 {C10R:C -> D9R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D9R:G -> C10R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C11R:G -> D8R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D8R:C -> C11R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C11R:G -> D9R:G: outward } 0 17 {D9R:G -> C11R:G: outward } 0 18 {D8R:C -> D9R:G: adjacent_5p upward } 0 19 {D9R:G -> D8R:C: adjacent_3p downward } 0 20 {D9R:G -> D10R:C: adjacent_5p upward } 0 21 {D10R:C -> D9R:G: adjacent_3p downward } 0 22 {D10R:C -> D11R:G: adjacent_5p upward } 0 23 {D11R:G -> D10R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 E29R:U 0 1 E30R:G 0 2 E31R:A 0 3 E32R:C 0 4 E38R:A 0 5 E39R:U 0 6 E40R:C 0 7 E41R:A 0 [Edges] 0 {E29R:U -> E30R:G: adjacent_5p upward } 0 1 {E30R:G -> E29R:U: adjacent_3p downward } 0 2 {E29R:U -> E41R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {E41R:A -> E29R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {E30R:G -> E31R:A: adjacent_5p upward } 0 5 {E31R:A -> E30R:G: adjacent_3p downward } 0 6 {E30R:G -> E40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E40R:C -> E30R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E30R:G -> E41R:A: outward } 0 9 {E41R:A -> E30R:G: outward } 0 10 {E31R:A -> E32R:C: adjacent_5p upward } 0 11 {E32R:C -> E31R:A: adjacent_3p downward } 0 12 {E31R:A -> E39R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {E39R:U -> E31R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {E32R:C -> E38R:A: pairing antiparallel trans one_hbond 78 Ws/Wh } 0 15 {E38R:A -> E32R:C: pairing antiparallel trans one_hbond 78 Wh/Ws } 0 16 {E38R:A -> E39R:U: adjacent_5p upward } 0 17 {E39R:U -> E38R:A: adjacent_3p downward } 0 18 {E39R:U -> E40R:C: adjacent_5p upward } 0 19 {E40R:C -> E39R:U: adjacent_3p downward } 0 20 {E40R:C -> E41R:A: adjacent_5p upward } 0 21 {E41R:A -> E40R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 F29R:U 0 1 F30R:G 0 2 F31R:A 0 3 F32R:C 0 4 F38R:A 0 5 F39R:U 0 6 F40R:C 0 7 F41R:A 0 [Edges] 0 {F29R:U -> F30R:G: adjacent_5p upward } 0 1 {F30R:G -> F29R:U: adjacent_3p downward } 0 2 {F29R:U -> F41R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {F41R:A -> F29R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {F30R:G -> F31R:A: adjacent_5p upward } 0 5 {F31R:A -> F30R:G: adjacent_3p downward } 0 6 {F30R:G -> F40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {F40R:C -> F30R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {F30R:G -> F41R:A: outward } 0 9 {F41R:A -> F30R:G: outward } 0 10 {F31R:A -> F32R:C: adjacent_5p upward } 0 11 {F32R:C -> F31R:A: adjacent_3p downward } 0 12 {F31R:A -> F39R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {F39R:U -> F31R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {F32R:C -> F38R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 15 {F38R:A -> F32R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 16 {F38R:A -> F39R:U: adjacent_5p upward } 0 17 {F39R:U -> F38R:A: adjacent_3p downward } 0 18 {F39R:U -> F40R:C: adjacent_5p upward } 0 19 {F40R:C -> F39R:U: adjacent_3p downward } 0 20 {F40R:C -> F41R:A: adjacent_5p upward } 0 21 {F41R:A -> F40R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 H28R:U 0 1 H29R:U 0 2 H30R:G 0 3 H31R:A 0 4 H39R:U 0 5 H40R:C 0 6 H41R:A 0 7 H42R:A 0 [Edges] 0 {H28R:U -> H29R:U: adjacent_5p upward } 0 1 {H29R:U -> H28R:U: adjacent_3p downward } 0 2 {H28R:U -> H42R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {H42R:A -> H28R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {H29R:U -> H30R:G: adjacent_5p upward } 0 5 {H30R:G -> H29R:U: adjacent_3p downward } 0 6 {H29R:U -> H41R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {H41R:A -> H29R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {H30R:G -> H31R:A: adjacent_5p upward } 0 9 {H31R:A -> H30R:G: adjacent_3p downward } 0 10 {H30R:G -> H40R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {H40R:C -> H30R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {H30R:G -> H41R:A: outward } 0 13 {H41R:A -> H30R:G: outward } 0 14 {H31R:A -> H39R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {H39R:U -> H31R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {H39R:U -> H40R:C: adjacent_5p upward } 0 17 {H40R:C -> H39R:U: adjacent_3p downward } 0 18 {H40R:C -> H41R:A: adjacent_5p upward } 0 19 {H41R:A -> H40R:C: adjacent_3p downward } 0 20 {H41R:A -> H42R:A: adjacent_5p upward } 0 21 {H42R:A -> H41R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 H29R:U 0 1 H30R:G 0 2 H31R:A 0 3 H32R:C 0 4 H38R:A 0 5 H39R:U 0 6 H40R:C 0 7 H41R:A 0 [Edges] 0 {H29R:U -> H30R:G: adjacent_5p upward } 0 1 {H30R:G -> H29R:U: adjacent_3p downward } 0 2 {H29R:U -> H41R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {H41R:A -> H29R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {H30R:G -> H31R:A: adjacent_5p upward } 0 5 {H31R:A -> H30R:G: adjacent_3p downward } 0 6 {H30R:G -> H40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {H40R:C -> H30R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {H30R:G -> H41R:A: outward } 0 9 {H41R:A -> H30R:G: outward } 0 10 {H31R:A -> H32R:C: adjacent_5p upward } 0 11 {H32R:C -> H31R:A: adjacent_3p downward } 0 12 {H31R:A -> H39R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {H39R:U -> H31R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {H32R:C -> H38R:A: pairing antiparallel trans one_hbond 78 Ws/Wh } 0 15 {H38R:A -> H32R:C: pairing antiparallel trans one_hbond 78 Wh/Ws } 0 16 {H38R:A -> H39R:U: adjacent_5p upward } 0 17 {H39R:U -> H38R:A: adjacent_3p downward } 0 18 {H39R:U -> H40R:C: adjacent_5p upward } 0 19 {H40R:C -> H39R:U: adjacent_3p downward } 0 20 {H40R:C -> H41R:A: adjacent_5p upward } 0 21 {H41R:A -> H40R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 B2R:G 0 1 B3R:A 0 2 B4R:G 0 3 B5R:G 0 4 B15R:C 0 5 B16R:U 0 6 B17R:U 0 7 B18R:U 0 [Edges] 0 {B2R:G -> B3R:A: adjacent_5p upward } 0 1 {B3R:A -> B2R:G: adjacent_3p downward } 0 2 {B2R:G -> B18R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B18R:U -> B2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B3R:A -> B4R:G: adjacent_5p upward } 0 5 {B4R:G -> B3R:A: adjacent_3p downward } 0 6 {B3R:A -> B17R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B17R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B4R:G -> B5R:G: adjacent_5p upward } 0 9 {B5R:G -> B4R:G: adjacent_3p downward } 0 10 {B4R:G -> B16R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B16R:U -> B4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {B5R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B15R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B15R:C -> B16R:U: adjacent_5p upward } 0 15 {B16R:U -> B15R:C: adjacent_3p downward } 0 16 {B16R:U -> B17R:U: adjacent_5p } 0 17 {B17R:U -> B16R:U: adjacent_3p } 0 18 {B17R:U -> B18R:U: adjacent_5p upward } 0 19 {B18R:U -> B17R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B3R:A 0 1 B4R:G 0 2 B5R:G 0 3 B6R:C 0 4 B14R:G 0 5 B15R:C 0 6 B16R:U 0 7 B17R:U 0 [Edges] 0 {B3R:A -> B4R:G: adjacent_5p upward } 0 1 {B4R:G -> B3R:A: adjacent_3p downward } 0 2 {B3R:A -> B17R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B17R:U -> B3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B4R:G -> B5R:G: adjacent_5p upward } 0 5 {B5R:G -> B4R:G: adjacent_3p downward } 0 6 {B4R:G -> B16R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B16R:U -> B4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B5R:G -> B6R:C: adjacent_5p upward } 0 9 {B6R:C -> B5R:G: adjacent_3p downward } 0 10 {B5R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B15R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B6R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B14R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B14R:G -> B15R:C: adjacent_5p upward } 0 15 {B15R:C -> B14R:G: adjacent_3p downward } 0 16 {B15R:C -> B16R:U: adjacent_5p upward } 0 17 {B16R:U -> B15R:C: adjacent_3p downward } 0 18 {B16R:U -> B17R:U: adjacent_5p } 0 19 {B17R:U -> B16R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B4R:G 0 1 B5R:G 0 2 B6R:C 0 3 B7R:U 0 4 B13R:A 0 5 B14R:G 0 6 B15R:C 0 7 B16R:U 0 [Edges] 0 {B4R:G -> B5R:G: adjacent_5p upward } 0 1 {B5R:G -> B4R:G: adjacent_3p downward } 0 2 {B4R:G -> B16R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B16R:U -> B4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B5R:G -> B6R:C: adjacent_5p upward } 0 5 {B6R:C -> B5R:G: adjacent_3p downward } 0 6 {B5R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B15R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B6R:C -> B7R:U: adjacent_5p } 0 9 {B7R:U -> B6R:C: adjacent_3p } 0 10 {B6R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B14R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B7R:U -> B13R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B13R:A -> B7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B13R:A -> B14R:G: adjacent_5p upward } 0 15 {B14R:G -> B13R:A: adjacent_3p downward } 0 16 {B14R:G -> B15R:C: adjacent_5p upward } 0 17 {B15R:C -> B14R:G: adjacent_3p downward } 0 18 {B15R:C -> B16R:U: adjacent_5p upward } 0 19 {B16R:U -> B15R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A1R:G 0 1 A2R:C 0 2 A3R:G 0 3 A4R:U 0 4 B39R:U 0 5 B40R:C 0 6 B41R:G 0 7 B42R:C 0 [Edges] 0 {A1R:G -> A2R:C: adjacent_5p upward } 0 1 {A2R:C -> A1R:G: adjacent_3p downward } 0 2 {A1R:G -> B42R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B42R:C -> A1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2R:C -> A3R:G: adjacent_5p } 0 5 {A3R:G -> A2R:C: adjacent_3p } 0 6 {A2R:C -> B41R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B41R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:G -> A4R:U: adjacent_5p upward } 0 9 {A4R:U -> A3R:G: adjacent_3p downward } 0 10 {A3R:G -> B40R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B40R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A3R:G -> B41R:G: outward } 0 13 {B41R:G -> A3R:G: outward } 0 14 {A4R:U -> B39R:U: pairing antiparallel cis XVI Ws/Ww } 0 15 {B39R:U -> A4R:U: pairing antiparallel cis XVI Ww/Ws } 0 16 {B39R:U -> B40R:C: adjacent_5p upward } 0 17 {B40R:C -> B39R:U: adjacent_3p downward } 0 18 {B40R:C -> B41R:G: adjacent_5p } 0 19 {B41R:G -> B40R:C: adjacent_3p } 0 20 {B41R:G -> B42R:C: adjacent_5p upward } 0 21 {B42R:C -> B41R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A2R:C 0 1 A3R:G 0 2 A4R:U 0 3 A5R:C 0 4 B38R:G 0 5 B39R:U 0 6 B40R:C 0 7 B41R:G 0 [Edges] 0 {A2R:C -> A3R:G: adjacent_5p } 0 1 {A3R:G -> A2R:C: adjacent_3p } 0 2 {A2R:C -> B41R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B41R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> B40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B40R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:G -> B41R:G: outward } 0 9 {B41R:G -> A3R:G: outward } 0 10 {A4R:U -> A5R:C: adjacent_5p } 0 11 {A5R:C -> A4R:U: adjacent_3p } 0 12 {A4R:U -> B39R:U: pairing antiparallel cis XVI Ws/Ww } 0 13 {B39R:U -> A4R:U: pairing antiparallel cis XVI Ww/Ws } 0 14 {A5R:C -> B38R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B38R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B38R:G -> B39R:U: adjacent_5p upward } 0 17 {B39R:U -> B38R:G: adjacent_3p downward } 0 18 {B39R:U -> B40R:C: adjacent_5p upward } 0 19 {B40R:C -> B39R:U: adjacent_3p downward } 0 20 {B40R:C -> B41R:G: adjacent_5p } 0 21 {B41R:G -> B40R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:A 0 2 A9R:C 0 3 A10R:C 0 4 B32R:G 0 5 B33R:G 0 6 B34R:U 0 7 B35R:G 0 [Edges] 0 {A7R:C -> A8R:A: adjacent_5p upward } 0 1 {A8R:A -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> B35R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B35R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:A -> A9R:C: adjacent_5p upward } 0 5 {A9R:C -> A8R:A: adjacent_3p downward } 0 6 {A8R:A -> B34R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B34R:U -> A8R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A8R:A -> B35R:G: outward } 0 9 {B35R:G -> A8R:A: outward } 0 10 {A9R:C -> A10R:C: adjacent_5p upward } 0 11 {A10R:C -> A9R:C: adjacent_3p downward } 0 12 {A9R:C -> B33R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B33R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A10R:C -> B32R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B32R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B32R:G -> B33R:G: adjacent_5p upward } 0 17 {B33R:G -> B32R:G: adjacent_3p downward } 0 18 {B33R:G -> B34R:U: adjacent_5p upward } 0 19 {B34R:U -> B33R:G: adjacent_3p downward } 0 20 {B34R:U -> B35R:G: adjacent_5p } 0 21 {B35R:G -> B34R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A8R:A 0 1 A9R:C 0 2 A10R:C 0 3 A11R:G 0 4 B31R:C 0 5 B32R:G 0 6 B33R:G 0 7 B34R:U 0 [Edges] 0 {A8R:A -> A9R:C: adjacent_5p upward } 0 1 {A9R:C -> A8R:A: adjacent_3p downward } 0 2 {A8R:A -> B34R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B34R:U -> A8R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:C -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:C: adjacent_3p downward } 0 6 {A9R:C -> B33R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B33R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:C -> A11R:G: adjacent_5p upward } 0 9 {A11R:G -> A10R:C: adjacent_3p downward } 0 10 {A10R:C -> B32R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B32R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A11R:G -> B31R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B31R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A11R:G -> B32R:G: outward } 0 15 {B32R:G -> A11R:G: outward } 0 16 {B31R:C -> B32R:G: adjacent_5p upward } 0 17 {B32R:G -> B31R:C: adjacent_3p downward } 0 18 {B32R:G -> B33R:G: adjacent_5p upward } 0 19 {B33R:G -> B32R:G: adjacent_3p downward } 0 20 {B33R:G -> B34R:U: adjacent_5p upward } 0 21 {B34R:U -> B33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A9R:C 0 1 A10R:C 0 2 A11R:G 0 3 A12R:G 0 4 B30R:C 0 5 B31R:C 0 6 B32R:G 0 7 B33R:G 0 [Edges] 0 {A9R:C -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:C: adjacent_3p downward } 0 2 {A9R:C -> B33R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B33R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:C -> A11R:G: adjacent_5p upward } 0 5 {A11R:G -> A10R:C: adjacent_3p downward } 0 6 {A10R:C -> B32R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B32R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:G -> A12R:G: adjacent_5p upward } 0 9 {A12R:G -> A11R:G: adjacent_3p downward } 0 10 {A11R:G -> B31R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B31R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A11R:G -> B32R:G: outward } 0 13 {B32R:G -> A11R:G: outward } 0 14 {A12R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B30R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B30R:C -> B31R:C: adjacent_5p } 0 17 {B31R:C -> B30R:C: adjacent_3p } 0 18 {B31R:C -> B32R:G: adjacent_5p upward } 0 19 {B32R:G -> B31R:C: adjacent_3p downward } 0 20 {B32R:G -> B33R:G: adjacent_5p upward } 0 21 {B33R:G -> B32R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:C 0 1 A11R:G 0 2 A12R:G 0 3 A13R:U 0 4 B29R:A 0 5 B30R:C 0 6 B31R:C 0 7 B32R:G 0 [Edges] 0 {A10R:C -> A11R:G: adjacent_5p upward } 0 1 {A11R:G -> A10R:C: adjacent_3p downward } 0 2 {A10R:C -> B32R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B32R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:G -> A12R:G: adjacent_5p upward } 0 5 {A12R:G -> A11R:G: adjacent_3p downward } 0 6 {A11R:G -> B31R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B31R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:G -> B32R:G: outward } 0 9 {B32R:G -> A11R:G: outward } 0 10 {A12R:G -> A13R:U: adjacent_5p upward } 0 11 {A13R:U -> A12R:G: adjacent_3p downward } 0 12 {A12R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B30R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A13R:U -> B29R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B29R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B29R:A -> B30R:C: adjacent_5p upward } 0 17 {B30R:C -> B29R:A: adjacent_3p downward } 0 18 {B30R:C -> B31R:C: adjacent_5p } 0 19 {B31R:C -> B30R:C: adjacent_3p } 0 20 {B31R:C -> B32R:G: adjacent_5p upward } 0 21 {B32R:G -> B31R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A11R:G 0 1 A12R:G 0 2 A13R:U 0 3 A14R:G 0 4 B28R:C 0 5 B29R:A 0 6 B30R:C 0 7 B31R:C 0 [Edges] 0 {A11R:G -> A12R:G: adjacent_5p upward } 0 1 {A12R:G -> A11R:G: adjacent_3p downward } 0 2 {A11R:G -> B31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B31R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:G -> A13R:U: adjacent_5p upward } 0 5 {A13R:U -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B30R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:U -> A14R:G: adjacent_5p } 0 9 {A14R:G -> A13R:U: adjacent_3p } 0 10 {A13R:U -> B29R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B29R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A14R:G -> B28R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B28R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:G -> B29R:A: outward } 0 15 {B29R:A -> A14R:G: outward } 0 16 {B28R:C -> B29R:A: adjacent_5p upward } 0 17 {B29R:A -> B28R:C: adjacent_3p downward } 0 18 {B29R:A -> B30R:C: adjacent_5p upward } 0 19 {B30R:C -> B29R:A: adjacent_3p downward } 0 20 {B30R:C -> B31R:C: adjacent_5p } 0 21 {B31R:C -> B30R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A17R:G 0 1 A18R:U 0 2 A19R:C 0 3 A20R:G 0 4 B23R:C 0 5 B24R:G 0 6 B25R:U 0 7 B26R:C 0 [Edges] 0 {A17R:G -> A18R:U: adjacent_5p upward } 0 1 {A18R:U -> A17R:G: adjacent_3p downward } 0 2 {A17R:G -> B26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B26R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A18R:U -> A19R:C: adjacent_5p upward } 0 5 {A19R:C -> A18R:U: adjacent_3p downward } 0 6 {A18R:U -> B25R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {B25R:U -> A18R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {A19R:C -> A20R:G: adjacent_5p upward } 0 9 {A20R:G -> A19R:C: adjacent_3p downward } 0 10 {A19R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B24R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A20R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B23R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A20R:G -> B24R:G: outward } 0 15 {B24R:G -> A20R:G: outward } 0 16 {B23R:C -> B24R:G: adjacent_5p } 0 17 {B24R:G -> B23R:C: adjacent_3p } 0 18 {B24R:G -> B25R:U: adjacent_5p upward } 0 19 {B25R:U -> B24R:G: adjacent_3p downward } 0 20 {B25R:U -> B26R:C: adjacent_5p } 0 21 {B26R:C -> B25R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A18R:U 0 1 A19R:C 0 2 A20R:G 0 3 A21R:C 0 4 B22R:G 0 5 B23R:C 0 6 B24R:G 0 7 B25R:U 0 [Edges] 0 {A18R:U -> A19R:C: adjacent_5p upward } 0 1 {A19R:C -> A18R:U: adjacent_3p downward } 0 2 {A18R:U -> B25R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {B25R:U -> A18R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {A19R:C -> A20R:G: adjacent_5p upward } 0 5 {A20R:G -> A19R:C: adjacent_3p downward } 0 6 {A19R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B24R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A20R:G -> A21R:C: adjacent_5p upward } 0 9 {A21R:C -> A20R:G: adjacent_3p downward } 0 10 {A20R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B23R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A20R:G -> B24R:G: outward } 0 13 {B24R:G -> A20R:G: outward } 0 14 {A21R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B22R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B22R:G -> B23R:C: adjacent_5p upward } 0 17 {B23R:C -> B22R:G: adjacent_3p downward } 0 18 {B23R:C -> B24R:G: adjacent_5p } 0 19 {B24R:G -> B23R:C: adjacent_3p } 0 20 {B24R:G -> B25R:U: adjacent_5p upward } 0 21 {B25R:U -> B24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 P2R:U 0 1 P3R:C 0 2 P4R:G 0 3 P5R:A 0 4 Q10R:U 0 5 Q11R:C 0 6 Q12R:G 0 7 Q13R:A 0 [Edges] 0 {P2R:U -> P3R:C: adjacent_5p upward } 0 1 {P3R:C -> P2R:U: adjacent_3p downward } 0 2 {P2R:U -> Q13R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {Q13R:A -> P2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {P3R:C -> P4R:G: adjacent_5p upward } 0 5 {P4R:G -> P3R:C: adjacent_3p downward } 0 6 {P3R:C -> Q12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {Q12R:G -> P3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {P4R:G -> P5R:A: adjacent_5p upward } 0 9 {P5R:A -> P4R:G: adjacent_3p downward } 0 10 {P4R:G -> Q11R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {Q11R:C -> P4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {P4R:G -> Q12R:G: outward } 0 13 {Q12R:G -> P4R:G: outward } 0 14 {P5R:A -> Q10R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {Q10R:U -> P5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {Q10R:U -> Q11R:C: adjacent_5p upward } 0 17 {Q11R:C -> Q10R:U: adjacent_3p downward } 0 18 {Q11R:C -> Q12R:G: adjacent_5p } 0 19 {Q12R:G -> Q11R:C: adjacent_3p } 0 20 {Q12R:G -> Q13R:A: adjacent_5p upward } 0 21 {Q13R:A -> Q12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 P3R:C 0 1 P4R:G 0 2 P5R:A 0 3 P6R:C 0 4 Q9R:G 0 5 Q10R:U 0 6 Q11R:C 0 7 Q12R:G 0 [Edges] 0 {P3R:C -> P4R:G: adjacent_5p upward } 0 1 {P4R:G -> P3R:C: adjacent_3p downward } 0 2 {P3R:C -> Q12R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {Q12R:G -> P3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {P4R:G -> P5R:A: adjacent_5p upward } 0 5 {P5R:A -> P4R:G: adjacent_3p downward } 0 6 {P4R:G -> Q11R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {Q11R:C -> P4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {P4R:G -> Q12R:G: outward } 0 9 {Q12R:G -> P4R:G: outward } 0 10 {P5R:A -> P6R:C: adjacent_5p upward } 0 11 {P6R:C -> P5R:A: adjacent_3p downward } 0 12 {P5R:A -> Q10R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {Q10R:U -> P5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {P6R:C -> Q9R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {Q9R:G -> P6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {Q9R:G -> Q10R:U: adjacent_5p upward } 0 17 {Q10R:U -> Q9R:G: adjacent_3p downward } 0 18 {Q10R:U -> Q11R:C: adjacent_5p upward } 0 19 {Q11R:C -> Q10R:U: adjacent_3p downward } 0 20 {Q11R:C -> Q12R:G: adjacent_5p } 0 21 {Q12R:G -> Q11R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 R2R:U 0 1 R3R:C 0 2 R4R:G 0 3 R5R:A 0 4 S10R:U 0 5 S11R:C 0 6 S12R:G 0 7 S13R:A 0 [Edges] 0 {R2R:U -> R3R:C: adjacent_5p upward } 0 1 {R3R:C -> R2R:U: adjacent_3p downward } 0 2 {R2R:U -> S13R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {S13R:A -> R2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {R3R:C -> R4R:G: adjacent_5p } 0 5 {R4R:G -> R3R:C: adjacent_3p } 0 6 {R3R:C -> S12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {S12R:G -> R3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R4R:G -> R5R:A: adjacent_5p upward } 0 9 {R5R:A -> R4R:G: adjacent_3p downward } 0 10 {R4R:G -> S11R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {S11R:C -> R4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {R4R:G -> S12R:G: outward } 0 13 {S12R:G -> R4R:G: outward } 0 14 {R5R:A -> S10R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {S10R:U -> R5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {S10R:U -> S11R:C: adjacent_5p upward } 0 17 {S11R:C -> S10R:U: adjacent_3p downward } 0 18 {S11R:C -> S12R:G: adjacent_5p } 0 19 {S12R:G -> S11R:C: adjacent_3p } 0 20 {S12R:G -> S13R:A: adjacent_5p upward } 0 21 {S13R:A -> S12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 R3R:C 0 1 R4R:G 0 2 R5R:A 0 3 R6R:C 0 4 S9R:G 0 5 S10R:U 0 6 S11R:C 0 7 S12R:G 0 [Edges] 0 {R3R:C -> R4R:G: adjacent_5p } 0 1 {R4R:G -> R3R:C: adjacent_3p } 0 2 {R3R:C -> S12R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {S12R:G -> R3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R4R:G -> R5R:A: adjacent_5p upward } 0 5 {R5R:A -> R4R:G: adjacent_3p downward } 0 6 {R4R:G -> S11R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {S11R:C -> R4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {R4R:G -> S12R:G: outward } 0 9 {S12R:G -> R4R:G: outward } 0 10 {R5R:A -> R6R:C: adjacent_5p upward } 0 11 {R6R:C -> R5R:A: adjacent_3p downward } 0 12 {R5R:A -> S10R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {S10R:U -> R5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {R6R:C -> S9R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {S9R:G -> R6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {S9R:G -> S10R:U: adjacent_5p upward } 0 17 {S10R:U -> S9R:G: adjacent_3p downward } 0 18 {S10R:U -> S11R:C: adjacent_5p upward } 0 19 {S11R:C -> S10R:U: adjacent_3p downward } 0 20 {S11R:C -> S12R:G: adjacent_5p } 0 21 {S12R:G -> S11R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C1945R:G 0 1 C1946R:U 0 2 C1947R:C 0 3 C1948R:G 0 4 C1958R:C 0 5 C1959R:G 0 6 C1960R:A 0 7 C1961R:C 0 [Edges] 0 {C1945R:G -> C1946R:U: adjacent_5p upward } 0 1 {C1946R:U -> C1945R:G: adjacent_3p downward } 0 2 {C1945R:G -> C1961R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C1961R:C -> C1945R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C1946R:U -> C1947R:C: adjacent_5p } 0 5 {C1947R:C -> C1946R:U: adjacent_3p } 0 6 {C1946R:U -> C1960R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C1960R:A -> C1946R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C1947R:C -> C1948R:G: adjacent_5p } 0 9 {C1948R:G -> C1947R:C: adjacent_3p } 0 10 {C1947R:C -> C1959R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C1959R:G -> C1947R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C1948R:G -> C1958R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C1958R:C -> C1948R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C1948R:G -> C1959R:G: outward } 0 15 {C1959R:G -> C1948R:G: outward } 0 16 {C1958R:C -> C1959R:G: adjacent_5p upward } 0 17 {C1959R:G -> C1958R:C: adjacent_3p downward } 0 18 {C1959R:G -> C1960R:A: adjacent_5p upward } 0 19 {C1960R:A -> C1959R:G: adjacent_3p downward } 0 20 {C1960R:A -> C1961R:C: adjacent_5p upward } 0 21 {C1961R:C -> C1960R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C1946R:U 0 1 C1947R:C 0 2 C1948R:G 0 3 C1949R:G 0 4 C1957R:C 0 5 C1958R:C 0 6 C1959R:G 0 7 C1960R:A 0 [Edges] 0 {C1946R:U -> C1947R:C: adjacent_5p } 0 1 {C1947R:C -> C1946R:U: adjacent_3p } 0 2 {C1946R:U -> C1960R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C1960R:A -> C1946R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C1947R:C -> C1948R:G: adjacent_5p } 0 5 {C1948R:G -> C1947R:C: adjacent_3p } 0 6 {C1947R:C -> C1959R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C1959R:G -> C1947R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C1948R:G -> C1949R:G: adjacent_5p upward } 0 9 {C1949R:G -> C1948R:G: adjacent_3p downward } 0 10 {C1948R:G -> C1958R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C1958R:C -> C1948R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C1948R:G -> C1959R:G: outward } 0 13 {C1959R:G -> C1948R:G: outward } 0 14 {C1949R:G -> C1957R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C1957R:C -> C1949R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C1957R:C -> C1958R:C: adjacent_5p upward } 0 17 {C1958R:C -> C1957R:C: adjacent_3p downward } 0 18 {C1958R:C -> C1959R:G: adjacent_5p upward } 0 19 {C1959R:G -> C1958R:C: adjacent_3p downward } 0 20 {C1959R:G -> C1960R:A: adjacent_5p upward } 0 21 {C1960R:A -> C1959R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D1945R:G 0 1 D1946R:U 0 2 D1947R:C 0 3 D1948R:G 0 4 D1958R:C 0 5 D1959R:G 0 6 D1960R:A 0 7 D1961R:C 0 [Edges] 0 {D1945R:G -> D1946R:U: adjacent_5p upward } 0 1 {D1946R:U -> D1945R:G: adjacent_3p downward } 0 2 {D1945R:G -> D1961R:C: pairing antiparallel cis Ww/Ww } 0 3 {D1961R:C -> D1945R:G: pairing antiparallel cis Ww/Ww } 0 4 {D1946R:U -> D1947R:C: adjacent_5p upward } 0 5 {D1947R:C -> D1946R:U: adjacent_3p downward } 0 6 {D1946R:U -> D1960R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {D1960R:A -> D1946R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {D1947R:C -> D1948R:G: adjacent_5p upward } 0 9 {D1948R:G -> D1947R:C: adjacent_3p downward } 0 10 {D1947R:C -> D1959R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D1959R:G -> D1947R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D1948R:G -> D1958R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D1958R:C -> D1948R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D1948R:G -> D1959R:G: outward } 0 15 {D1959R:G -> D1948R:G: outward } 0 16 {D1958R:C -> D1959R:G: adjacent_5p } 0 17 {D1959R:G -> D1958R:C: adjacent_3p } 0 18 {D1959R:G -> D1960R:A: adjacent_5p upward } 0 19 {D1960R:A -> D1959R:G: adjacent_3p downward } 0 20 {D1960R:A -> D1961R:C: adjacent_5p upward } 0 21 {D1961R:C -> D1960R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D1946R:U 0 1 D1947R:C 0 2 D1948R:G 0 3 D1949R:G 0 4 D1957R:C 0 5 D1958R:C 0 6 D1959R:G 0 7 D1960R:A 0 [Edges] 0 {D1946R:U -> D1947R:C: adjacent_5p upward } 0 1 {D1947R:C -> D1946R:U: adjacent_3p downward } 0 2 {D1946R:U -> D1960R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {D1960R:A -> D1946R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {D1947R:C -> D1948R:G: adjacent_5p upward } 0 5 {D1948R:G -> D1947R:C: adjacent_3p downward } 0 6 {D1947R:C -> D1959R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D1959R:G -> D1947R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D1948R:G -> D1949R:G: adjacent_5p upward } 0 9 {D1949R:G -> D1948R:G: adjacent_3p downward } 0 10 {D1948R:G -> D1958R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D1958R:C -> D1948R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D1948R:G -> D1959R:G: outward } 0 13 {D1959R:G -> D1948R:G: outward } 0 14 {D1949R:G -> D1957R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D1957R:C -> D1949R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D1949R:G -> D1958R:C: outward } 0 17 {D1958R:C -> D1949R:G: outward } 0 18 {D1957R:C -> D1958R:C: adjacent_5p } 0 19 {D1958R:C -> D1957R:C: adjacent_3p } 0 20 {D1958R:C -> D1959R:G: adjacent_5p } 0 21 {D1959R:G -> D1958R:C: adjacent_3p } 0 22 {D1959R:G -> D1960R:A: adjacent_5p upward } 0 23 {D1960R:A -> D1959R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 11 17 19 . 20 . 6 . 7 13 . . 21 . 22 7 3 . . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 B1R:G 0 1 B2R:C 0 2 B3R:C 0 3 B4R:G 0 4 B69R:C 0 5 B70R:G 0 6 B71R:G 0 7 B72R:C 0 [Edges] 0 {B1R:G -> B2R:C: adjacent_5p upward } 0 1 {B2R:C -> B1R:G: adjacent_3p downward } 0 2 {B1R:G -> B72R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B72R:C -> B1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B2R:C -> B3R:C: adjacent_5p upward } 0 5 {B3R:C -> B2R:C: adjacent_3p downward } 0 6 {B2R:C -> B71R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B71R:G -> B2R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B3R:C -> B4R:G: adjacent_5p } 0 9 {B4R:G -> B3R:C: adjacent_3p } 0 10 {B3R:C -> B70R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B70R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B4R:G -> B69R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B69R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B4R:G -> B70R:G: outward } 0 15 {B70R:G -> B4R:G: outward } 0 16 {B69R:C -> B70R:G: adjacent_5p upward } 0 17 {B70R:G -> B69R:C: adjacent_3p downward } 0 18 {B70R:G -> B71R:G: adjacent_5p upward } 0 19 {B71R:G -> B70R:G: adjacent_3p downward } 0 20 {B71R:G -> B72R:C: adjacent_5p upward } 0 21 {B72R:C -> B71R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B2R:C 0 1 B3R:C 0 2 B4R:G 0 3 B5R:G 0 4 B68R:C 0 5 B69R:C 0 6 B70R:G 0 7 B71R:G 0 [Edges] 0 {B2R:C -> B3R:C: adjacent_5p upward } 0 1 {B3R:C -> B2R:C: adjacent_3p downward } 0 2 {B2R:C -> B71R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B71R:G -> B2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B3R:C -> B4R:G: adjacent_5p } 0 5 {B4R:G -> B3R:C: adjacent_3p } 0 6 {B3R:C -> B70R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B70R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B4R:G -> B5R:G: adjacent_5p upward } 0 9 {B5R:G -> B4R:G: adjacent_3p downward } 0 10 {B4R:G -> B69R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B69R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B4R:G -> B70R:G: outward } 0 13 {B70R:G -> B4R:G: outward } 0 14 {B5R:G -> B68R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B68R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B68R:C -> B69R:C: adjacent_5p upward } 0 17 {B69R:C -> B68R:C: adjacent_3p downward } 0 18 {B69R:C -> B70R:G: adjacent_5p upward } 0 19 {B70R:G -> B69R:C: adjacent_3p downward } 0 20 {B70R:G -> B71R:G: adjacent_5p upward } 0 21 {B71R:G -> B70R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B3R:C 0 1 B4R:G 0 2 B5R:G 0 3 B6R:G 0 4 B67R:C 0 5 B68R:C 0 6 B69R:C 0 7 B70R:G 0 [Edges] 0 {B3R:C -> B4R:G: adjacent_5p } 0 1 {B4R:G -> B3R:C: adjacent_3p } 0 2 {B3R:C -> B70R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B70R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B4R:G -> B5R:G: adjacent_5p upward } 0 5 {B5R:G -> B4R:G: adjacent_3p downward } 0 6 {B4R:G -> B69R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B69R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B4R:G -> B70R:G: outward } 0 9 {B70R:G -> B4R:G: outward } 0 10 {B5R:G -> B6R:G: adjacent_5p upward } 0 11 {B6R:G -> B5R:G: adjacent_3p downward } 0 12 {B5R:G -> B68R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B68R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B6R:G -> B67R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B67R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B67R:C -> B68R:C: adjacent_5p } 0 17 {B68R:C -> B67R:C: adjacent_3p } 0 18 {B68R:C -> B69R:C: adjacent_5p upward } 0 19 {B69R:C -> B68R:C: adjacent_3p downward } 0 20 {B69R:C -> B70R:G: adjacent_5p upward } 0 21 {B70R:G -> B69R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B4R:G 0 1 B5R:G 0 2 B6R:G 0 3 B7R:G 0 4 B66R:C 0 5 B67R:C 0 6 B68R:C 0 7 B69R:C 0 [Edges] 0 {B4R:G -> B5R:G: adjacent_5p upward } 0 1 {B5R:G -> B4R:G: adjacent_3p downward } 0 2 {B4R:G -> B69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B69R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B5R:G -> B6R:G: adjacent_5p upward } 0 5 {B6R:G -> B5R:G: adjacent_3p downward } 0 6 {B5R:G -> B68R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B68R:C -> B5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B6R:G -> B7R:G: adjacent_5p upward } 0 9 {B7R:G -> B6R:G: adjacent_3p downward } 0 10 {B6R:G -> B67R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B67R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B7R:G -> B66R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B66R:C -> B7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B66R:C -> B67R:C: adjacent_5p upward } 0 15 {B67R:C -> B66R:C: adjacent_3p downward } 0 16 {B67R:C -> B68R:C: adjacent_5p } 0 17 {B68R:C -> B67R:C: adjacent_3p } 0 18 {B68R:C -> B69R:C: adjacent_5p upward } 0 19 {B69R:C -> B68R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B10R:G 0 1 B11R:C 0 2 B12R:G 0 3 B13R:G 0 4 B22R:A 0 5 B23R:C 0 6 B24R:G 0 7 B25R:C 0 [Edges] 0 {B10R:G -> B11R:C: adjacent_5p upward } 0 1 {B11R:C -> B10R:G: adjacent_3p downward } 0 2 {B10R:G -> B25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B25R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B11R:C -> B12R:G: adjacent_5p } 0 5 {B12R:G -> B11R:C: adjacent_3p } 0 6 {B11R:C -> B24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B24R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B12R:G -> B13R:G: adjacent_5p upward } 0 9 {B13R:G -> B12R:G: adjacent_3p downward } 0 10 {B12R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B23R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B12R:G -> B24R:G: outward } 0 13 {B24R:G -> B12R:G: outward } 0 14 {B13R:G -> B22R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 15 {B22R:A -> B13R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 16 {B22R:A -> B23R:C: adjacent_5p upward } 0 17 {B23R:C -> B22R:A: adjacent_3p downward } 0 18 {B23R:C -> B24R:G: adjacent_5p upward } 0 19 {B24R:G -> B23R:C: adjacent_3p downward } 0 20 {B24R:G -> B25R:C: adjacent_5p upward } 0 21 {B25R:C -> B24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B26R:G 0 1 B27R:C 0 2 B28R:A 0 3 B29R:U 0 4 B41R:A 0 5 B42R:U 0 6 B43R:G 0 7 B44R:U 0 [Edges] 0 {B26R:G -> B27R:C: adjacent_5p upward } 0 1 {B27R:C -> B26R:G: adjacent_3p downward } 0 2 {B26R:G -> B44R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B44R:U -> B26R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B27R:C -> B28R:A: adjacent_5p upward } 0 5 {B28R:A -> B27R:C: adjacent_3p downward } 0 6 {B27R:C -> B43R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B43R:G -> B27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B28R:A -> B29R:U: adjacent_5p upward } 0 9 {B29R:U -> B28R:A: adjacent_3p downward } 0 10 {B28R:A -> B42R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B42R:U -> B28R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {B28R:A -> B43R:G: outward } 0 13 {B43R:G -> B28R:A: outward } 0 14 {B29R:U -> B41R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B41R:A -> B29R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B41R:A -> B42R:U: adjacent_5p upward } 0 17 {B42R:U -> B41R:A: adjacent_3p downward } 0 18 {B42R:U -> B43R:G: adjacent_5p upward } 0 19 {B43R:G -> B42R:U: adjacent_3p downward } 0 20 {B43R:G -> B44R:U: adjacent_5p upward } 0 21 {B44R:U -> B43R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B27R:C 0 1 B28R:A 0 2 B29R:U 0 3 B30R:G 0 4 B40R:C 0 5 B41R:A 0 6 B42R:U 0 7 B43R:G 0 [Edges] 0 {B27R:C -> B28R:A: adjacent_5p upward } 0 1 {B28R:A -> B27R:C: adjacent_3p downward } 0 2 {B27R:C -> B43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B43R:G -> B27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B28R:A -> B29R:U: adjacent_5p upward } 0 5 {B29R:U -> B28R:A: adjacent_3p downward } 0 6 {B28R:A -> B42R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B42R:U -> B28R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B28R:A -> B43R:G: outward } 0 9 {B43R:G -> B28R:A: outward } 0 10 {B29R:U -> B30R:G: adjacent_5p upward } 0 11 {B30R:G -> B29R:U: adjacent_3p downward } 0 12 {B29R:U -> B41R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B41R:A -> B29R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B30R:G -> B40R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B40R:C -> B30R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B30R:G -> B41R:A: outward } 0 17 {B41R:A -> B30R:G: outward } 0 18 {B40R:C -> B41R:A: adjacent_5p upward } 0 19 {B41R:A -> B40R:C: adjacent_3p downward } 0 20 {B41R:A -> B42R:U: adjacent_5p upward } 0 21 {B42R:U -> B41R:A: adjacent_3p downward } 0 22 {B42R:U -> B43R:G: adjacent_5p upward } 0 23 {B43R:G -> B42R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 B28R:A 0 1 B29R:U 0 2 B30R:G 0 3 B31R:A 0 4 B39R:U 0 5 B40R:C 0 6 B41R:A 0 7 B42R:U 0 [Edges] 0 {B28R:A -> B29R:U: adjacent_5p upward } 0 1 {B29R:U -> B28R:A: adjacent_3p downward } 0 2 {B28R:A -> B42R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B42R:U -> B28R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B29R:U -> B30R:G: adjacent_5p upward } 0 5 {B30R:G -> B29R:U: adjacent_3p downward } 0 6 {B29R:U -> B41R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B41R:A -> B29R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B30R:G -> B31R:A: adjacent_5p upward } 0 9 {B31R:A -> B30R:G: adjacent_3p downward } 0 10 {B30R:G -> B40R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B40R:C -> B30R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B30R:G -> B41R:A: outward } 0 13 {B41R:A -> B30R:G: outward } 0 14 {B31R:A -> B39R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B39R:U -> B31R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B39R:U -> B40R:C: adjacent_5p } 0 17 {B40R:C -> B39R:U: adjacent_3p } 0 18 {B40R:C -> B41R:A: adjacent_5p upward } 0 19 {B41R:A -> B40R:C: adjacent_3p downward } 0 20 {B41R:A -> B42R:U: adjacent_5p upward } 0 21 {B42R:U -> B41R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B49R:G 0 1 B50R:C 0 2 B51R:G 0 3 B52R:G 0 4 B62R:C 0 5 B63R:C 0 6 B64R:G 0 7 B65R:C 0 [Edges] 0 {B49R:G -> B50R:C: adjacent_5p upward } 0 1 {B50R:C -> B49R:G: adjacent_3p downward } 0 2 {B49R:G -> B65R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B65R:C -> B49R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B50R:C -> B51R:G: adjacent_5p } 0 5 {B51R:G -> B50R:C: adjacent_3p } 0 6 {B50R:C -> B64R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B64R:G -> B50R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B51R:G -> B52R:G: adjacent_5p upward } 0 9 {B52R:G -> B51R:G: adjacent_3p downward } 0 10 {B51R:G -> B63R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B63R:C -> B51R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B51R:G -> B64R:G: outward } 0 13 {B64R:G -> B51R:G: outward } 0 14 {B52R:G -> B62R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B62R:C -> B52R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B62R:C -> B63R:C: adjacent_5p upward } 0 17 {B63R:C -> B62R:C: adjacent_3p downward } 0 18 {B63R:C -> B64R:G: adjacent_5p upward } 0 19 {B64R:G -> B63R:C: adjacent_3p downward } 0 20 {B64R:G -> B65R:C: adjacent_5p upward } 0 21 {B65R:C -> B64R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B50R:C 0 1 B51R:G 0 2 B52R:G 0 3 B53R:G 0 4 B61R:C 0 5 B62R:C 0 6 B63R:C 0 7 B64R:G 0 [Edges] 0 {B50R:C -> B51R:G: adjacent_5p } 0 1 {B51R:G -> B50R:C: adjacent_3p } 0 2 {B50R:C -> B64R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B64R:G -> B50R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B51R:G -> B52R:G: adjacent_5p upward } 0 5 {B52R:G -> B51R:G: adjacent_3p downward } 0 6 {B51R:G -> B63R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B63R:C -> B51R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B51R:G -> B64R:G: outward } 0 9 {B64R:G -> B51R:G: outward } 0 10 {B52R:G -> B53R:G: adjacent_5p upward } 0 11 {B53R:G -> B52R:G: adjacent_3p downward } 0 12 {B52R:G -> B62R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B62R:C -> B52R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B53R:G -> B61R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B61R:C -> B53R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B61R:C -> B62R:C: adjacent_5p } 0 17 {B62R:C -> B61R:C: adjacent_3p } 0 18 {B62R:C -> B63R:C: adjacent_5p upward } 0 19 {B63R:C -> B62R:C: adjacent_3p downward } 0 20 {B63R:C -> B64R:G: adjacent_5p upward } 0 21 {B64R:G -> B63R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 E1R:G 0 1 E2R:C 0 2 E3R:C 0 3 E4R:G 0 4 E69R:C 0 5 E70R:G 0 6 E71R:G 0 7 E72R:C 0 [Edges] 0 {E1R:G -> E2R:C: adjacent_5p upward } 0 1 {E2R:C -> E1R:G: adjacent_3p downward } 0 2 {E1R:G -> E72R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E72R:C -> E1R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E2R:C -> E3R:C: adjacent_5p upward } 0 5 {E3R:C -> E2R:C: adjacent_3p downward } 0 6 {E2R:C -> E71R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E71R:G -> E2R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E3R:C -> E4R:G: adjacent_5p } 0 9 {E4R:G -> E3R:C: adjacent_3p } 0 10 {E3R:C -> E70R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {E70R:G -> E3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {E4R:G -> E69R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {E69R:C -> E4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {E4R:G -> E70R:G: outward } 0 15 {E70R:G -> E4R:G: outward } 0 16 {E69R:C -> E70R:G: adjacent_5p upward } 0 17 {E70R:G -> E69R:C: adjacent_3p downward } 0 18 {E70R:G -> E71R:G: adjacent_5p upward } 0 19 {E71R:G -> E70R:G: adjacent_3p downward } 0 20 {E71R:G -> E72R:C: adjacent_5p upward } 0 21 {E72R:C -> E71R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E2R:C 0 1 E3R:C 0 2 E4R:G 0 3 E5R:G 0 4 E68R:C 0 5 E69R:C 0 6 E70R:G 0 7 E71R:G 0 [Edges] 0 {E2R:C -> E3R:C: adjacent_5p upward } 0 1 {E3R:C -> E2R:C: adjacent_3p downward } 0 2 {E2R:C -> E71R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E71R:G -> E2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E3R:C -> E4R:G: adjacent_5p } 0 5 {E4R:G -> E3R:C: adjacent_3p } 0 6 {E3R:C -> E70R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E70R:G -> E3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E4R:G -> E5R:G: adjacent_5p upward } 0 9 {E5R:G -> E4R:G: adjacent_3p downward } 0 10 {E4R:G -> E69R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E69R:C -> E4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E4R:G -> E70R:G: outward } 0 13 {E70R:G -> E4R:G: outward } 0 14 {E5R:G -> E68R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {E68R:C -> E5R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {E68R:C -> E69R:C: adjacent_5p upward } 0 17 {E69R:C -> E68R:C: adjacent_3p downward } 0 18 {E69R:C -> E70R:G: adjacent_5p upward } 0 19 {E70R:G -> E69R:C: adjacent_3p downward } 0 20 {E70R:G -> E71R:G: adjacent_5p upward } 0 21 {E71R:G -> E70R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E3R:C 0 1 E4R:G 0 2 E5R:G 0 3 E6R:G 0 4 E67R:C 0 5 E68R:C 0 6 E69R:C 0 7 E70R:G 0 [Edges] 0 {E3R:C -> E4R:G: adjacent_5p } 0 1 {E4R:G -> E3R:C: adjacent_3p } 0 2 {E3R:C -> E70R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E70R:G -> E3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E4R:G -> E5R:G: adjacent_5p upward } 0 5 {E5R:G -> E4R:G: adjacent_3p downward } 0 6 {E4R:G -> E69R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E69R:C -> E4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E4R:G -> E70R:G: outward } 0 9 {E70R:G -> E4R:G: outward } 0 10 {E5R:G -> E6R:G: adjacent_5p upward } 0 11 {E6R:G -> E5R:G: adjacent_3p downward } 0 12 {E5R:G -> E68R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {E68R:C -> E5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {E6R:G -> E67R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {E67R:C -> E6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {E6R:G -> E68R:C: outward } 0 17 {E68R:C -> E6R:G: outward } 0 18 {E67R:C -> E68R:C: adjacent_5p } 0 19 {E68R:C -> E67R:C: adjacent_3p } 0 20 {E68R:C -> E69R:C: adjacent_5p upward } 0 21 {E69R:C -> E68R:C: adjacent_3p downward } 0 22 {E69R:C -> E70R:G: adjacent_5p upward } 0 23 {E70R:G -> E69R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 E4R:G 0 1 E5R:G 0 2 E6R:G 0 3 E7R:G 0 4 E66R:C 0 5 E67R:C 0 6 E68R:C 0 7 E69R:C 0 [Edges] 0 {E4R:G -> E5R:G: adjacent_5p upward } 0 1 {E5R:G -> E4R:G: adjacent_3p downward } 0 2 {E4R:G -> E69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E69R:C -> E4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E5R:G -> E6R:G: adjacent_5p upward } 0 5 {E6R:G -> E5R:G: adjacent_3p downward } 0 6 {E5R:G -> E68R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E68R:C -> E5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E6R:G -> E7R:G: adjacent_5p upward } 0 9 {E7R:G -> E6R:G: adjacent_3p downward } 0 10 {E6R:G -> E67R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E67R:C -> E6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E6R:G -> E68R:C: outward } 0 13 {E68R:C -> E6R:G: outward } 0 14 {E7R:G -> E66R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {E66R:C -> E7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {E66R:C -> E67R:C: adjacent_5p } 0 17 {E67R:C -> E66R:C: adjacent_3p } 0 18 {E67R:C -> E68R:C: adjacent_5p } 0 19 {E68R:C -> E67R:C: adjacent_3p } 0 20 {E68R:C -> E69R:C: adjacent_5p upward } 0 21 {E69R:C -> E68R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E10R:G 0 1 E11R:C 0 2 E12R:G 0 3 E13R:G 0 4 E22R:A 0 5 E23R:C 0 6 E24R:G 0 7 E25R:C 0 [Edges] 0 {E10R:G -> E11R:C: adjacent_5p upward } 0 1 {E11R:C -> E10R:G: adjacent_3p downward } 0 2 {E10R:G -> E25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E25R:C -> E10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E11R:C -> E12R:G: adjacent_5p } 0 5 {E12R:G -> E11R:C: adjacent_3p } 0 6 {E11R:C -> E24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E24R:G -> E11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E12R:G -> E13R:G: adjacent_5p upward } 0 9 {E13R:G -> E12R:G: adjacent_3p downward } 0 10 {E12R:G -> E23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E23R:C -> E12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E12R:G -> E24R:G: outward } 0 13 {E24R:G -> E12R:G: outward } 0 14 {E13R:G -> E22R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {E22R:A -> E13R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {E22R:A -> E23R:C: adjacent_5p upward } 0 17 {E23R:C -> E22R:A: adjacent_3p downward } 0 18 {E23R:C -> E24R:G: adjacent_5p upward } 0 19 {E24R:G -> E23R:C: adjacent_3p downward } 0 20 {E24R:G -> E25R:C: adjacent_5p upward } 0 21 {E25R:C -> E24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E26R:G 0 1 E27R:C 0 2 E28R:A 0 3 E29R:U 0 4 E41R:A 0 5 E42R:U 0 6 E43R:G 0 7 E44R:U 0 [Edges] 0 {E26R:G -> E27R:C: adjacent_5p upward } 0 1 {E27R:C -> E26R:G: adjacent_3p downward } 0 2 {E26R:G -> E44R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {E44R:U -> E26R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {E27R:C -> E28R:A: adjacent_5p upward } 0 5 {E28R:A -> E27R:C: adjacent_3p downward } 0 6 {E27R:C -> E43R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E43R:G -> E27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E28R:A -> E29R:U: adjacent_5p upward } 0 9 {E29R:U -> E28R:A: adjacent_3p downward } 0 10 {E28R:A -> E42R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {E42R:U -> E28R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {E28R:A -> E43R:G: outward } 0 13 {E43R:G -> E28R:A: outward } 0 14 {E29R:U -> E41R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {E41R:A -> E29R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {E41R:A -> E42R:U: adjacent_5p upward } 0 17 {E42R:U -> E41R:A: adjacent_3p downward } 0 18 {E42R:U -> E43R:G: adjacent_5p upward } 0 19 {E43R:G -> E42R:U: adjacent_3p downward } 0 20 {E43R:G -> E44R:U: adjacent_5p upward } 0 21 {E44R:U -> E43R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E27R:C 0 1 E28R:A 0 2 E29R:U 0 3 E30R:G 0 4 E40R:C 0 5 E41R:A 0 6 E42R:U 0 7 E43R:G 0 [Edges] 0 {E27R:C -> E28R:A: adjacent_5p upward } 0 1 {E28R:A -> E27R:C: adjacent_3p downward } 0 2 {E27R:C -> E43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E43R:G -> E27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E28R:A -> E29R:U: adjacent_5p upward } 0 5 {E29R:U -> E28R:A: adjacent_3p downward } 0 6 {E28R:A -> E42R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {E42R:U -> E28R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {E28R:A -> E43R:G: outward } 0 9 {E43R:G -> E28R:A: outward } 0 10 {E29R:U -> E30R:G: adjacent_5p upward } 0 11 {E30R:G -> E29R:U: adjacent_3p downward } 0 12 {E29R:U -> E41R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {E41R:A -> E29R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {E30R:G -> E40R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {E40R:C -> E30R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {E30R:G -> E41R:A: outward } 0 17 {E41R:A -> E30R:G: outward } 0 18 {E40R:C -> E41R:A: adjacent_5p } 0 19 {E41R:A -> E40R:C: adjacent_3p } 0 20 {E41R:A -> E42R:U: adjacent_5p upward } 0 21 {E42R:U -> E41R:A: adjacent_3p downward } 0 22 {E42R:U -> E43R:G: adjacent_5p upward } 0 23 {E43R:G -> E42R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 E28R:A 0 1 E29R:U 0 2 E30R:G 0 3 E31R:A 0 4 E39R:U 0 5 E40R:C 0 6 E41R:A 0 7 E42R:U 0 [Edges] 0 {E28R:A -> E29R:U: adjacent_5p upward } 0 1 {E29R:U -> E28R:A: adjacent_3p downward } 0 2 {E28R:A -> E42R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {E42R:U -> E28R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {E29R:U -> E30R:G: adjacent_5p upward } 0 5 {E30R:G -> E29R:U: adjacent_3p downward } 0 6 {E29R:U -> E41R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {E41R:A -> E29R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {E30R:G -> E31R:A: adjacent_5p upward } 0 9 {E31R:A -> E30R:G: adjacent_3p downward } 0 10 {E30R:G -> E40R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E40R:C -> E30R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E30R:G -> E41R:A: outward } 0 13 {E41R:A -> E30R:G: outward } 0 14 {E31R:A -> E39R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 15 {E39R:U -> E31R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 16 {E39R:U -> E40R:C: adjacent_5p } 0 17 {E40R:C -> E39R:U: adjacent_3p } 0 18 {E40R:C -> E41R:A: adjacent_5p } 0 19 {E41R:A -> E40R:C: adjacent_3p } 0 20 {E41R:A -> E42R:U: adjacent_5p upward } 0 21 {E42R:U -> E41R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E29R:U 0 1 E30R:G 0 2 E31R:A 0 3 E32R:C 0 4 E38R:A 0 5 E39R:U 0 6 E40R:C 0 7 E41R:A 0 [Edges] 0 {E29R:U -> E30R:G: adjacent_5p upward } 0 1 {E30R:G -> E29R:U: adjacent_3p downward } 0 2 {E29R:U -> E41R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {E41R:A -> E29R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {E30R:G -> E31R:A: adjacent_5p upward } 0 5 {E31R:A -> E30R:G: adjacent_3p downward } 0 6 {E30R:G -> E40R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E40R:C -> E30R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E30R:G -> E41R:A: outward } 0 9 {E41R:A -> E30R:G: outward } 0 10 {E31R:A -> E32R:C: adjacent_5p upward } 0 11 {E32R:C -> E31R:A: adjacent_3p downward } 0 12 {E31R:A -> E39R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 13 {E39R:U -> E31R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 14 {E32R:C -> E38R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 15 {E38R:A -> E32R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 16 {E38R:A -> E39R:U: adjacent_5p upward } 0 17 {E39R:U -> E38R:A: adjacent_3p downward } 0 18 {E39R:U -> E40R:C: adjacent_5p } 0 19 {E40R:C -> E39R:U: adjacent_3p } 0 20 {E40R:C -> E41R:A: adjacent_5p } 0 21 {E41R:A -> E40R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 E49R:G 0 1 E50R:C 0 2 E51R:G 0 3 E52R:G 0 4 E62R:C 0 5 E63R:C 0 6 E64R:G 0 7 E65R:C 0 [Edges] 0 {E49R:G -> E50R:C: adjacent_5p upward } 0 1 {E50R:C -> E49R:G: adjacent_3p downward } 0 2 {E49R:G -> E65R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E65R:C -> E49R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E50R:C -> E51R:G: adjacent_5p } 0 5 {E51R:G -> E50R:C: adjacent_3p } 0 6 {E50R:C -> E64R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {E64R:G -> E50R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {E51R:G -> E52R:G: adjacent_5p upward } 0 9 {E52R:G -> E51R:G: adjacent_3p downward } 0 10 {E51R:G -> E63R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E63R:C -> E51R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E51R:G -> E64R:G: outward } 0 13 {E64R:G -> E51R:G: outward } 0 14 {E52R:G -> E62R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {E62R:C -> E52R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {E62R:C -> E63R:C: adjacent_5p upward } 0 17 {E63R:C -> E62R:C: adjacent_3p downward } 0 18 {E63R:C -> E64R:G: adjacent_5p upward } 0 19 {E64R:G -> E63R:C: adjacent_3p downward } 0 20 {E64R:G -> E65R:C: adjacent_5p upward } 0 21 {E65R:C -> E64R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 E50R:C 0 1 E51R:G 0 2 E52R:G 0 3 E53R:G 0 4 E61R:C 0 5 E62R:C 0 6 E63R:C 0 7 E64R:G 0 [Edges] 0 {E50R:C -> E51R:G: adjacent_5p } 0 1 {E51R:G -> E50R:C: adjacent_3p } 0 2 {E50R:C -> E64R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E64R:G -> E50R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E51R:G -> E52R:G: adjacent_5p upward } 0 5 {E52R:G -> E51R:G: adjacent_3p downward } 0 6 {E51R:G -> E63R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E63R:C -> E51R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {E51R:G -> E64R:G: outward } 0 9 {E64R:G -> E51R:G: outward } 0 10 {E52R:G -> E53R:G: adjacent_5p upward } 0 11 {E53R:G -> E52R:G: adjacent_3p downward } 0 12 {E52R:G -> E62R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {E62R:C -> E52R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {E53R:G -> E61R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {E61R:C -> E53R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {E61R:C -> E62R:C: adjacent_5p } 0 17 {E62R:C -> E61R:C: adjacent_3p } 0 18 {E62R:C -> E63R:C: adjacent_5p upward } 0 19 {E63R:C -> E62R:C: adjacent_3p downward } 0 20 {E63R:C -> E64R:G: adjacent_5p upward } 0 21 {E64R:G -> E63R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C2R:G 0 1 C3R:C 0 2 C4R:G 0 3 C5R:G 0 4 C68R:C 0 5 C69R:C 0 6 C70R:G 0 7 C71R:C 0 [Edges] 0 {C2R:G -> C3R:C: adjacent_5p upward } 0 1 {C3R:C -> C2R:G: adjacent_3p downward } 0 2 {C2R:G -> C71R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C71R:C -> C2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C3R:C -> C4R:G: adjacent_5p } 0 5 {C4R:G -> C3R:C: adjacent_3p } 0 6 {C3R:C -> C70R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C70R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:G -> C5R:G: adjacent_5p outward } 0 9 {C5R:G -> C4R:G: adjacent_3p outward } 0 10 {C4R:G -> C70R:G: upward } 0 11 {C70R:G -> C4R:G: downward } 0 12 {C5R:G -> C68R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C68R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C68R:C -> C69R:C: adjacent_5p } 0 15 {C69R:C -> C68R:C: adjacent_3p } 0 16 {C69R:C -> C70R:G: adjacent_5p } 0 17 {C70R:G -> C69R:C: adjacent_3p } 0 18 {C70R:G -> C71R:C: adjacent_5p upward } 0 19 {C71R:C -> C70R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . 10 . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 11 . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C3R:C 0 1 C4R:G 0 2 C5R:G 0 3 C6R:C 0 4 C67R:G 0 5 C68R:C 0 6 C69R:C 0 7 C70R:G 0 [Edges] 0 {C3R:C -> C4R:G: adjacent_5p } 0 1 {C4R:G -> C3R:C: adjacent_3p } 0 2 {C3R:C -> C70R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C70R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C4R:G -> C5R:G: adjacent_5p outward } 0 5 {C5R:G -> C4R:G: adjacent_3p outward } 0 6 {C4R:G -> C70R:G: upward } 0 7 {C70R:G -> C4R:G: downward } 0 8 {C5R:G -> C6R:C: adjacent_5p upward } 0 9 {C6R:C -> C5R:G: adjacent_3p downward } 0 10 {C5R:G -> C68R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C68R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C6R:C -> C67R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C67R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C67R:G -> C68R:C: adjacent_5p upward } 0 15 {C68R:C -> C67R:G: adjacent_3p downward } 0 16 {C68R:C -> C69R:C: adjacent_5p } 0 17 {C69R:C -> C68R:C: adjacent_3p } 0 18 {C69R:C -> C70R:G: adjacent_5p } 0 19 {C70R:G -> C69R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . 6 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . . . . . 17 . 18 7 3 7 . . . . 19 . [GraphModel] [Vertices] 0 C10R:G 0 1 C11R:C 0 2 C12R:U 0 3 C13R:C 0 4 C22R:G 0 5 C23R:A 0 6 C24R:G 0 7 C25R:C 0 [Edges] 0 {C10R:G -> C11R:C: adjacent_5p upward } 0 1 {C11R:C -> C10R:G: adjacent_3p downward } 0 2 {C10R:G -> C25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C25R:C -> C10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C11R:C -> C12R:U: adjacent_5p upward } 0 5 {C12R:U -> C11R:C: adjacent_3p downward } 0 6 {C11R:C -> C24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C24R:G -> C11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C12R:U -> C13R:C: adjacent_5p upward } 0 9 {C13R:C -> C12R:U: adjacent_3p downward } 0 10 {C12R:U -> C23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C23R:A -> C12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C13R:C -> C22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C22R:G -> C13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C22R:G -> C23R:A: adjacent_5p upward } 0 15 {C23R:A -> C22R:G: adjacent_3p downward } 0 16 {C23R:A -> C24R:G: adjacent_5p upward } 0 17 {C24R:G -> C23R:A: adjacent_3p downward } 0 18 {C24R:G -> C25R:C: adjacent_5p upward } 0 19 {C25R:C -> C24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C27R:G 0 1 C28R:G 0 2 C29R:G 0 3 C30R:A 0 4 C40R:U 0 5 C41R:C 0 6 C42R:C 0 7 C43R:C 0 [Edges] 0 {C27R:G -> C28R:G: adjacent_5p upward } 0 1 {C28R:G -> C27R:G: adjacent_3p downward } 0 2 {C27R:G -> C43R:C: pairing antiparallel cis Ww/Ww } 0 3 {C43R:C -> C27R:G: pairing antiparallel cis Ww/Ww } 0 4 {C28R:G -> C29R:G: adjacent_5p upward } 0 5 {C29R:G -> C28R:G: adjacent_3p downward } 0 6 {C28R:G -> C42R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C42R:C -> C28R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C29R:G -> C30R:A: adjacent_5p upward } 0 9 {C30R:A -> C29R:G: adjacent_3p downward } 0 10 {C29R:G -> C41R:C: pairing antiparallel cis Ww/Ww } 0 11 {C41R:C -> C29R:G: pairing antiparallel cis Ww/Ww } 0 12 {C30R:A -> C40R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {C40R:U -> C30R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {C40R:U -> C41R:C: adjacent_5p upward } 0 15 {C41R:C -> C40R:U: adjacent_3p downward } 0 16 {C41R:C -> C42R:C: adjacent_5p } 0 17 {C42R:C -> C41R:C: adjacent_3p } 0 18 {C42R:C -> C43R:C: adjacent_5p upward } 0 19 {C43R:C -> C42R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C28R:G 0 1 C29R:G 0 2 C30R:A 0 3 C31R:U 0 4 C39R:G 0 5 C40R:U 0 6 C41R:C 0 7 C42R:C 0 [Edges] 0 {C28R:G -> C29R:G: adjacent_5p upward } 0 1 {C29R:G -> C28R:G: adjacent_3p downward } 0 2 {C28R:G -> C42R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C42R:C -> C28R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C29R:G -> C30R:A: adjacent_5p upward } 0 5 {C30R:A -> C29R:G: adjacent_3p downward } 0 6 {C29R:G -> C41R:C: pairing antiparallel cis Ww/Ww } 0 7 {C41R:C -> C29R:G: pairing antiparallel cis Ww/Ww } 0 8 {C30R:A -> C31R:U: adjacent_5p upward } 0 9 {C31R:U -> C30R:A: adjacent_3p downward } 0 10 {C30R:A -> C40R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C40R:U -> C30R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C31R:U -> C39R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {C39R:G -> C31R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {C39R:G -> C40R:U: adjacent_5p upward } 0 15 {C40R:U -> C39R:G: adjacent_3p downward } 0 16 {C40R:U -> C41R:C: adjacent_5p upward } 0 17 {C41R:C -> C40R:U: adjacent_3p downward } 0 18 {C41R:C -> C42R:C: adjacent_5p } 0 19 {C42R:C -> C41R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C49R:G 0 1 C50R:G 0 2 C51R:A 0 3 C52R:G 0 4 C62R:C 0 5 C63R:U 0 6 C64R:C 0 7 C65R:C 0 [Edges] 0 {C49R:G -> C50R:G: adjacent_5p upward } 0 1 {C50R:G -> C49R:G: adjacent_3p downward } 0 2 {C49R:G -> C65R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C65R:C -> C49R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C50R:G -> C51R:A: adjacent_5p upward } 0 5 {C51R:A -> C50R:G: adjacent_3p downward } 0 6 {C50R:G -> C64R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C64R:C -> C50R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C50R:G -> C65R:C: outward } 0 9 {C65R:C -> C50R:G: outward } 0 10 {C51R:A -> C52R:G: adjacent_5p upward } 0 11 {C52R:G -> C51R:A: adjacent_3p downward } 0 12 {C51R:A -> C63R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {C63R:U -> C51R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {C52R:G -> C62R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C62R:C -> C52R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C62R:C -> C63R:U: adjacent_5p upward } 0 17 {C63R:U -> C62R:C: adjacent_3p downward } 0 18 {C63R:U -> C64R:C: adjacent_5p upward } 0 19 {C64R:C -> C63R:U: adjacent_3p downward } 0 20 {C64R:C -> C65R:C: adjacent_5p } 0 21 {C65R:C -> C64R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C50R:G 0 1 C51R:A 0 2 C52R:G 0 3 C53R:G 0 4 C61R:C 0 5 C62R:C 0 6 C63R:U 0 7 C64R:C 0 [Edges] 0 {C50R:G -> C51R:A: adjacent_5p upward } 0 1 {C51R:A -> C50R:G: adjacent_3p downward } 0 2 {C50R:G -> C64R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C64R:C -> C50R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C51R:A -> C52R:G: adjacent_5p upward } 0 5 {C52R:G -> C51R:A: adjacent_3p downward } 0 6 {C51R:A -> C63R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C63R:U -> C51R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C52R:G -> C53R:G: adjacent_5p upward } 0 9 {C53R:G -> C52R:G: adjacent_3p downward } 0 10 {C52R:G -> C62R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C62R:C -> C52R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C53R:G -> C61R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C61R:C -> C53R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C53R:G -> C62R:C: outward } 0 15 {C62R:C -> C53R:G: outward } 0 16 {C61R:C -> C62R:C: adjacent_5p } 0 17 {C62R:C -> C61R:C: adjacent_3p } 0 18 {C62R:C -> C63R:U: adjacent_5p upward } 0 19 {C63R:U -> C62R:C: adjacent_3p downward } 0 20 {C63R:U -> C64R:C: adjacent_5p upward } 0 21 {C64R:C -> C63R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D2R:G 0 1 D3R:C 0 2 D4R:G 0 3 D5R:G 0 4 D68R:C 0 5 D69R:C 0 6 D70R:G 0 7 D71R:C 0 [Edges] 0 {D2R:G -> D3R:C: adjacent_5p upward } 0 1 {D3R:C -> D2R:G: adjacent_3p downward } 0 2 {D2R:G -> D71R:C: pairing antiparallel cis Ww/Ww } 0 3 {D71R:C -> D2R:G: pairing antiparallel cis Ww/Ww } 0 4 {D3R:C -> D4R:G: adjacent_5p } 0 5 {D4R:G -> D3R:C: adjacent_3p } 0 6 {D3R:C -> D70R:G: pairing antiparallel cis Ww/Ww } 0 7 {D70R:G -> D3R:C: pairing antiparallel cis Ww/Ww } 0 8 {D4R:G -> D5R:G: adjacent_5p outward } 0 9 {D5R:G -> D4R:G: adjacent_3p outward } 0 10 {D4R:G -> D70R:G: upward } 0 11 {D70R:G -> D4R:G: downward } 0 12 {D5R:G -> D68R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D68R:C -> D5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D68R:C -> D69R:C: adjacent_5p } 0 15 {D69R:C -> D68R:C: adjacent_3p } 0 16 {D69R:C -> D70R:G: adjacent_5p } 0 17 {D70R:G -> D69R:C: adjacent_3p } 0 18 {D70R:G -> D71R:C: adjacent_5p upward } 0 19 {D71R:C -> D70R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . 10 . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . . . 15 . 16 . 6 . 7 11 . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D3R:C 0 1 D4R:G 0 2 D5R:G 0 3 D6R:C 0 4 D67R:G 0 5 D68R:C 0 6 D69R:C 0 7 D70R:G 0 [Edges] 0 {D3R:C -> D4R:G: adjacent_5p } 0 1 {D4R:G -> D3R:C: adjacent_3p } 0 2 {D3R:C -> D70R:G: pairing antiparallel cis Ww/Ww } 0 3 {D70R:G -> D3R:C: pairing antiparallel cis Ww/Ww } 0 4 {D4R:G -> D5R:G: adjacent_5p outward } 0 5 {D5R:G -> D4R:G: adjacent_3p outward } 0 6 {D4R:G -> D70R:G: upward } 0 7 {D70R:G -> D4R:G: downward } 0 8 {D5R:G -> D6R:C: adjacent_5p upward } 0 9 {D6R:C -> D5R:G: adjacent_3p downward } 0 10 {D5R:G -> D68R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D68R:C -> D5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D6R:C -> D67R:G: pairing antiparallel cis Ww/Ww } 0 13 {D67R:G -> D6R:C: pairing antiparallel cis Ww/Ww } 0 14 {D67R:G -> D68R:C: adjacent_5p upward } 0 15 {D68R:C -> D67R:G: adjacent_3p downward } 0 16 {D68R:C -> D69R:C: adjacent_5p } 0 17 {D69R:C -> D68R:C: adjacent_3p } 0 18 {D69R:C -> D70R:G: adjacent_5p } 0 19 {D70R:G -> D69R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . 6 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . . . . . 17 . 18 7 3 7 . . . . 19 . [GraphModel] [Vertices] 0 D10R:G 0 1 D11R:C 0 2 D12R:U 0 3 D13R:C 0 4 D22R:G 0 5 D23R:A 0 6 D24R:G 0 7 D25R:C 0 [Edges] 0 {D10R:G -> D11R:C: adjacent_5p upward } 0 1 {D11R:C -> D10R:G: adjacent_3p downward } 0 2 {D10R:G -> D25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D25R:C -> D10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D11R:C -> D12R:U: adjacent_5p upward } 0 5 {D12R:U -> D11R:C: adjacent_3p downward } 0 6 {D11R:C -> D24R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D24R:G -> D11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D12R:U -> D13R:C: adjacent_5p upward } 0 9 {D13R:C -> D12R:U: adjacent_3p downward } 0 10 {D12R:U -> D23R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D23R:A -> D12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D13R:C -> D22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D22R:G -> D13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D22R:G -> D23R:A: adjacent_5p upward } 0 15 {D23R:A -> D22R:G: adjacent_3p downward } 0 16 {D23R:A -> D24R:G: adjacent_5p upward } 0 17 {D24R:G -> D23R:A: adjacent_3p downward } 0 18 {D24R:G -> D25R:C: adjacent_5p upward } 0 19 {D25R:C -> D24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D49R:G 0 1 D50R:G 0 2 D51R:A 0 3 D52R:G 0 4 D62R:C 0 5 D63R:U 0 6 D64R:C 0 7 D65R:C 0 [Edges] 0 {D49R:G -> D50R:G: adjacent_5p } 0 1 {D50R:G -> D49R:G: adjacent_3p } 0 2 {D49R:G -> D65R:C: pairing antiparallel cis Ww/Ww } 0 3 {D65R:C -> D49R:G: pairing antiparallel cis Ww/Ww } 0 4 {D50R:G -> D51R:A: adjacent_5p upward } 0 5 {D51R:A -> D50R:G: adjacent_3p downward } 0 6 {D50R:G -> D64R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {D64R:C -> D50R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {D50R:G -> D65R:C: outward } 0 9 {D65R:C -> D50R:G: outward } 0 10 {D51R:A -> D52R:G: adjacent_5p upward } 0 11 {D52R:G -> D51R:A: adjacent_3p downward } 0 12 {D51R:A -> D63R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {D63R:U -> D51R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {D52R:G -> D62R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D62R:C -> D52R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D62R:C -> D63R:U: adjacent_5p } 0 17 {D63R:U -> D62R:C: adjacent_3p } 0 18 {D63R:U -> D64R:C: adjacent_5p upward } 0 19 {D64R:C -> D63R:U: adjacent_3p downward } 0 20 {D64R:C -> D65R:C: adjacent_5p } 0 21 {D65R:C -> D64R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D50R:G 0 1 D51R:A 0 2 D52R:G 0 3 D53R:G 0 4 D61R:C 0 5 D62R:C 0 6 D63R:U 0 7 D64R:C 0 [Edges] 0 {D50R:G -> D51R:A: adjacent_5p upward } 0 1 {D51R:A -> D50R:G: adjacent_3p downward } 0 2 {D50R:G -> D64R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {D64R:C -> D50R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {D51R:A -> D52R:G: adjacent_5p upward } 0 5 {D52R:G -> D51R:A: adjacent_3p downward } 0 6 {D51R:A -> D63R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D63R:U -> D51R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D52R:G -> D53R:G: adjacent_5p upward } 0 9 {D53R:G -> D52R:G: adjacent_3p downward } 0 10 {D52R:G -> D62R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D62R:C -> D52R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D53R:G -> D61R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D61R:C -> D53R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D61R:C -> D62R:C: adjacent_5p } 0 15 {D62R:C -> D61R:C: adjacent_3p } 0 16 {D62R:C -> D63R:U: adjacent_5p } 0 17 {D63R:U -> D62R:C: adjacent_3p } 0 18 {D63R:U -> D64R:C: adjacent_5p upward } 0 19 {D64R:C -> D63R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:C 0 3 A5R:A 0 4 B10R:U 0 5 B11R:G 0 6 B12R:C 0 7 B13R:U 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B13R:U -> A2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A3R:G -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:A: adjacent_5p } 0 9 {A5R:A -> A4R:C: adjacent_3p } 0 10 {A4R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B11R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B10R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A5R:A -> B11R:G: outward } 0 15 {B11R:G -> A5R:A: outward } 0 16 {B10R:U -> B11R:G: adjacent_5p } 0 17 {B11R:G -> B10R:U: adjacent_3p } 0 18 {B11R:G -> B12R:C: adjacent_5p upward } 0 19 {B12R:C -> B11R:G: adjacent_3p downward } 0 20 {B12R:C -> B13R:U: adjacent_5p upward } 0 21 {B13R:U -> B12R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:C 0 2 A5R:A 0 3 A6R:A 0 4 B9R:U 0 5 B10R:U 0 6 B11R:G 0 7 B12R:C 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B12R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:A: adjacent_5p } 0 5 {A5R:A -> A4R:C: adjacent_3p } 0 6 {A4R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B11R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:A -> A6R:A: adjacent_5p upward } 0 9 {A6R:A -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B10R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:A -> B11R:G: outward } 0 13 {B11R:G -> A5R:A: outward } 0 14 {A6R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B9R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B9R:U -> B10R:U: adjacent_5p } 0 17 {B10R:U -> B9R:U: adjacent_3p } 0 18 {B10R:U -> B11R:G: adjacent_5p } 0 19 {B11R:G -> B10R:U: adjacent_3p } 0 20 {B11R:G -> B12R:C: adjacent_5p upward } 0 21 {B12R:C -> B11R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:A 0 2 A6R:A 0 3 A7R:G 0 4 B8R:C 0 5 B9R:U 0 6 B10R:U 0 7 B11R:G 0 [Edges] 0 {A4R:C -> A5R:A: adjacent_5p } 0 1 {A5R:A -> A4R:C: adjacent_3p } 0 2 {A4R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B11R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> A6R:A: adjacent_5p upward } 0 5 {A6R:A -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B10R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:A -> B11R:G: outward } 0 9 {B11R:G -> A5R:A: outward } 0 10 {A6R:A -> A7R:G: adjacent_5p upward } 0 11 {A7R:G -> A6R:A: adjacent_3p downward } 0 12 {A6R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B9R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A7R:G -> B8R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B8R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B8R:C -> B9R:U: adjacent_5p upward } 0 17 {B9R:U -> B8R:C: adjacent_3p downward } 0 18 {B9R:U -> B10R:U: adjacent_5p } 0 19 {B10R:U -> B9R:U: adjacent_3p } 0 20 {B10R:U -> B11R:G: adjacent_5p } 0 21 {B11R:G -> B10R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:A 0 2 A7R:G 0 3 A8R:A 0 4 B7R:G 0 5 B8R:C 0 6 B9R:U 0 7 B10R:U 0 [Edges] 0 {A5R:A -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B10R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:A -> A7R:G: adjacent_5p upward } 0 5 {A7R:G -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B9R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:G -> A8R:A: adjacent_5p upward } 0 9 {A8R:A -> A7R:G: adjacent_3p downward } 0 10 {A7R:G -> B8R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B8R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:A -> B7R:G: pairing antiparallel cis VIII Ww/Ww } 0 13 {B7R:G -> A8R:A: pairing antiparallel cis VIII Ww/Ww } 0 14 {B7R:G -> B8R:C: adjacent_5p upward } 0 15 {B8R:C -> B7R:G: adjacent_3p downward } 0 16 {B8R:C -> B9R:U: adjacent_5p upward } 0 17 {B9R:U -> B8R:C: adjacent_3p downward } 0 18 {B9R:U -> B10R:U: adjacent_5p } 0 19 {B10R:U -> B9R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:G 0 2 A8R:A 0 3 A9R:G 0 4 B6R:G 0 5 B7R:G 0 6 B8R:C 0 7 B9R:U 0 [Edges] 0 {A6R:A -> A7R:G: adjacent_5p upward } 0 1 {A7R:G -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B9R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:G -> A8R:A: adjacent_5p upward } 0 5 {A8R:A -> A7R:G: adjacent_3p downward } 0 6 {A7R:G -> B8R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B8R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:A -> A9R:G: adjacent_5p upward } 0 9 {A9R:G -> A8R:A: adjacent_3p downward } 0 10 {A8R:A -> B7R:G: pairing antiparallel cis VIII Ww/Ww } 0 11 {B7R:G -> A8R:A: pairing antiparallel cis VIII Ww/Ww } 0 12 {A9R:G -> B6R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 13 {B6R:G -> A9R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 14 {B6R:G -> B7R:G: adjacent_5p upward } 0 15 {B7R:G -> B6R:G: adjacent_3p downward } 0 16 {B7R:G -> B8R:C: adjacent_5p upward } 0 17 {B8R:C -> B7R:G: adjacent_3p downward } 0 18 {B8R:C -> B9R:U: adjacent_5p upward } 0 19 {B9R:U -> B8R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:G 0 2 A13R:A 0 3 A14R:C 0 4 B3R:G 0 5 B4R:U 0 6 B5R:C 0 7 B6R:G 0 [Edges] 0 {A11R:C -> A12R:G: adjacent_5p } 0 1 {A12R:G -> A11R:C: adjacent_3p } 0 2 {A11R:C -> B6R:G: pairing antiparallel cis Ww/Ww } 0 3 {B6R:G -> A11R:C: pairing antiparallel cis Ww/Ww } 0 4 {A12R:G -> A13R:A: adjacent_5p upward } 0 5 {A13R:A -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B5R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> B6R:G: outward } 0 9 {B6R:G -> A12R:G: outward } 0 10 {A13R:A -> A14R:C: adjacent_5p upward } 0 11 {A14R:C -> A13R:A: adjacent_3p downward } 0 12 {A13R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B4R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A14R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B3R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B3R:G -> B4R:U: adjacent_5p upward } 0 17 {B4R:U -> B3R:G: adjacent_3p downward } 0 18 {B4R:U -> B5R:C: adjacent_5p upward } 0 19 {B5R:C -> B4R:U: adjacent_3p downward } 0 20 {B5R:C -> B6R:G: adjacent_5p upward } 0 21 {B6R:G -> B5R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:A 0 2 A14R:C 0 3 A15R:C 0 4 B2R:G 0 5 B3R:G 0 6 B4R:U 0 7 B5R:C 0 [Edges] 0 {A12R:G -> A13R:A: adjacent_5p upward } 0 1 {A13R:A -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B5R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:A -> A14R:C: adjacent_5p upward } 0 5 {A14R:C -> A13R:A: adjacent_3p downward } 0 6 {A13R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B4R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A14R:C -> A15R:C: adjacent_5p upward } 0 9 {A15R:C -> A14R:C: adjacent_3p downward } 0 10 {A14R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B3R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A15R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B2R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B2R:G -> B3R:G: adjacent_5p upward } 0 15 {B3R:G -> B2R:G: adjacent_3p downward } 0 16 {B3R:G -> B4R:U: adjacent_5p upward } 0 17 {B4R:U -> B3R:G: adjacent_3p downward } 0 18 {B4R:U -> B5R:C: adjacent_5p upward } 0 19 {B5R:C -> B4R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:C 0 1 A3R:U 0 2 A4R:G 0 3 A5R:A 0 4 B13R:A 0 5 B14R:C 0 6 B15R:G 0 7 B16R:G 0 [Edges] 0 {A2R:C -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:C: adjacent_3p downward } 0 2 {A2R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B16R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:G: adjacent_5p } 0 5 {A4R:G -> A3R:U: adjacent_3p } 0 6 {A3R:U -> B15R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B15R:G -> A3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A4R:G -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> B14R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B14R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> B15R:G: outward } 0 13 {B15R:G -> A4R:G: outward } 0 14 {A5R:A -> B13R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 15 {B13R:A -> A5R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 16 {B13R:A -> B14R:C: adjacent_5p upward } 0 17 {B14R:C -> B13R:A: adjacent_3p downward } 0 18 {B14R:C -> B15R:G: adjacent_5p upward } 0 19 {B15R:G -> B14R:C: adjacent_3p downward } 0 20 {B15R:G -> B16R:G: adjacent_5p upward } 0 21 {B16R:G -> B15R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:U 0 2 A9R:G 0 3 A10R:C 0 4 B9R:G 0 5 B10R:C 0 6 B11R:A 0 7 B12R:C 0 [Edges] 0 {A7R:G -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B12R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:U -> A9R:G: adjacent_5p upward } 0 5 {A9R:G -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B11R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:G -> A10R:C: adjacent_5p upward } 0 9 {A10R:C -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B10R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:G -> B11R:A: outward } 0 13 {B11R:A -> A9R:G: outward } 0 14 {A10R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B9R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B9R:G -> B10R:C: adjacent_5p upward } 0 17 {B10R:C -> B9R:G: adjacent_3p downward } 0 18 {B10R:C -> B11R:A: adjacent_5p upward } 0 19 {B11R:A -> B10R:C: adjacent_3p downward } 0 20 {B11R:A -> B12R:C: adjacent_5p upward } 0 21 {B12R:C -> B11R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:G 0 2 A10R:C 0 3 A11R:A 0 4 B8R:U 0 5 B9R:G 0 6 B10R:C 0 7 B11R:A 0 [Edges] 0 {A8R:U -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:U: adjacent_3p downward } 0 2 {A8R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B11R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:G -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B10R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> B11R:A: outward } 0 9 {B11R:A -> A9R:G: outward } 0 10 {A10R:C -> A11R:A: adjacent_5p upward } 0 11 {A11R:A -> A10R:C: adjacent_3p downward } 0 12 {A10R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B9R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A11R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B8R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A11R:A -> B9R:G: outward } 0 17 {B9R:G -> A11R:A: outward } 0 18 {B8R:U -> B9R:G: adjacent_5p upward } 0 19 {B9R:G -> B8R:U: adjacent_3p downward } 0 20 {B9R:G -> B10R:C: adjacent_5p upward } 0 21 {B10R:C -> B9R:G: adjacent_3p downward } 0 22 {B10R:C -> B11R:A: adjacent_5p upward } 0 23 {B11R:A -> B10R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:C 0 2 A11R:A 0 3 A12R:C 0 4 B7R:G 0 5 B8R:U 0 6 B9R:G 0 7 B10R:C 0 [Edges] 0 {A9R:G -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B10R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:C -> A11R:A: adjacent_5p upward } 0 5 {A11R:A -> A10R:C: adjacent_3p downward } 0 6 {A10R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B9R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:A -> A12R:C: adjacent_5p upward } 0 9 {A12R:C -> A11R:A: adjacent_3p downward } 0 10 {A11R:A -> B8R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B8R:U -> A11R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A11R:A -> B9R:G: outward } 0 13 {B9R:G -> A11R:A: outward } 0 14 {A12R:C -> B7R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B7R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B7R:G -> B8R:U: adjacent_5p upward } 0 17 {B8R:U -> B7R:G: adjacent_3p downward } 0 18 {B8R:U -> B9R:G: adjacent_5p upward } 0 19 {B9R:G -> B8R:U: adjacent_3p downward } 0 20 {B9R:G -> B10R:C: adjacent_5p upward } 0 21 {B10R:C -> B9R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A13R:A 0 1 A14R:C 0 2 A15R:G 0 3 A16R:G 0 4 B2R:C 0 5 B3R:U 0 6 B4R:G 0 7 B5R:A 0 [Edges] 0 {A13R:A -> A14R:C: adjacent_5p upward } 0 1 {A14R:C -> A13R:A: adjacent_3p downward } 0 2 {A13R:A -> B5R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 3 {B5R:A -> A13R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 4 {A14R:C -> A15R:G: adjacent_5p upward } 0 5 {A15R:G -> A14R:C: adjacent_3p downward } 0 6 {A14R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B4R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A15R:G -> A16R:G: adjacent_5p upward } 0 9 {A16R:G -> A15R:G: adjacent_3p downward } 0 10 {A15R:G -> B3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B3R:U -> A15R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A15R:G -> B4R:G: outward } 0 13 {B4R:G -> A15R:G: outward } 0 14 {A16R:G -> B2R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B2R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B2R:C -> B3R:U: adjacent_5p upward } 0 17 {B3R:U -> B2R:C: adjacent_3p downward } 0 18 {B3R:U -> B4R:G: adjacent_5p } 0 19 {B4R:G -> B3R:U: adjacent_3p } 0 20 {B4R:G -> B5R:A: adjacent_5p upward } 0 21 {B5R:A -> B4R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:U 0 3 A5R:C 0 4 B35R:G 0 5 B36R:A 0 6 B37R:C 0 7 B38R:C 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B38R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B38R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> B37R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B37R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:U -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:U: adjacent_3p downward } 0 10 {A4R:U -> B36R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B36R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:C -> B35R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B35R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B35R:G -> B36R:A: adjacent_5p upward } 0 15 {B36R:A -> B35R:G: adjacent_3p downward } 0 16 {B36R:A -> B37R:C: adjacent_5p upward } 0 17 {B37R:C -> B36R:A: adjacent_3p downward } 0 18 {B37R:C -> B38R:C: adjacent_5p upward } 0 19 {B38R:C -> B37R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:U 0 2 A5R:C 0 3 A6R:G 0 4 B34R:C 0 5 B35R:G 0 6 B36R:A 0 7 B37R:C 0 [Edges] 0 {A3R:G -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> B37R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B37R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:U -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:U: adjacent_3p downward } 0 6 {A4R:U -> B36R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B36R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:C -> A6R:G: adjacent_5p upward } 0 9 {A6R:G -> A5R:C: adjacent_3p downward } 0 10 {A5R:C -> B35R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B35R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:G -> B34R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B34R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:G -> B35R:G: outward } 0 15 {B35R:G -> A6R:G: outward } 0 16 {B34R:C -> B35R:G: adjacent_5p upward } 0 17 {B35R:G -> B34R:C: adjacent_3p downward } 0 18 {B35R:G -> B36R:A: adjacent_5p upward } 0 19 {B36R:A -> B35R:G: adjacent_3p downward } 0 20 {B36R:A -> B37R:C: adjacent_5p upward } 0 21 {B37R:C -> B36R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:C 0 2 A9R:U 0 3 A10R:U 0 4 B28R:A 0 5 B29R:A 0 6 B30R:G 0 7 B31R:A 0 [Edges] 0 {A7R:G -> A8R:C: adjacent_5p upward } 0 1 {A8R:C -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> B31R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {B31R:A -> A7R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A8R:C -> A9R:U: adjacent_5p upward } 0 5 {A9R:U -> A8R:C: adjacent_3p downward } 0 6 {A8R:C -> B30R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B30R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:U -> A10R:U: adjacent_5p upward } 0 9 {A10R:U -> A9R:U: adjacent_3p downward } 0 10 {A9R:U -> B29R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B29R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A10R:U -> B28R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B28R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B28R:A -> B29R:A: adjacent_5p upward } 0 15 {B29R:A -> B28R:A: adjacent_3p downward } 0 16 {B29R:A -> B30R:G: adjacent_5p upward } 0 17 {B30R:G -> B29R:A: adjacent_3p downward } 0 18 {B30R:G -> B31R:A: adjacent_5p upward } 0 19 {B31R:A -> B30R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:U 0 2 A10R:U 0 3 A11R:G 0 4 B27R:C 0 5 B28R:A 0 6 B29R:A 0 7 B30R:G 0 [Edges] 0 {A8R:C -> A9R:U: adjacent_5p upward } 0 1 {A9R:U -> A8R:C: adjacent_3p downward } 0 2 {A8R:C -> B30R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B30R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:U -> A10R:U: adjacent_5p upward } 0 5 {A10R:U -> A9R:U: adjacent_3p downward } 0 6 {A9R:U -> B29R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B29R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A10R:U -> A11R:G: adjacent_5p upward } 0 9 {A11R:G -> A10R:U: adjacent_3p downward } 0 10 {A10R:U -> B28R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B28R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A11R:G -> B27R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B27R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A11R:G -> B28R:A: outward } 0 15 {B28R:A -> A11R:G: outward } 0 16 {B27R:C -> B28R:A: adjacent_5p upward } 0 17 {B28R:A -> B27R:C: adjacent_3p downward } 0 18 {B28R:A -> B29R:A: adjacent_5p upward } 0 19 {B29R:A -> B28R:A: adjacent_3p downward } 0 20 {B29R:A -> B30R:G: adjacent_5p upward } 0 21 {B30R:G -> B29R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A9R:U 0 1 A10R:U 0 2 A11R:G 0 3 A12R:C 0 4 B26R:G 0 5 B27R:C 0 6 B28R:A 0 7 B29R:A 0 [Edges] 0 {A9R:U -> A10R:U: adjacent_5p upward } 0 1 {A10R:U -> A9R:U: adjacent_3p downward } 0 2 {A9R:U -> B29R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B29R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A10R:U -> A11R:G: adjacent_5p upward } 0 5 {A11R:G -> A10R:U: adjacent_3p downward } 0 6 {A10R:U -> B28R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B28R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:G -> A12R:C: adjacent_5p upward } 0 9 {A12R:C -> A11R:G: adjacent_3p downward } 0 10 {A11R:G -> B27R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B27R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A11R:G -> B28R:A: outward } 0 13 {B28R:A -> A11R:G: outward } 0 14 {A12R:C -> B26R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B26R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B26R:G -> B27R:C: adjacent_5p upward } 0 17 {B27R:C -> B26R:G: adjacent_3p downward } 0 18 {B27R:C -> B28R:A: adjacent_5p upward } 0 19 {B28R:A -> B27R:C: adjacent_3p downward } 0 20 {B28R:A -> B29R:A: adjacent_5p upward } 0 21 {B29R:A -> B28R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:U 0 1 A11R:G 0 2 A12R:C 0 3 A13R:U 0 4 B25R:G 0 5 B26R:G 0 6 B27R:C 0 7 B28R:A 0 [Edges] 0 {A10R:U -> A11R:G: adjacent_5p upward } 0 1 {A11R:G -> A10R:U: adjacent_3p downward } 0 2 {A10R:U -> B28R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B28R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A11R:G -> A12R:C: adjacent_5p upward } 0 5 {A12R:C -> A11R:G: adjacent_3p downward } 0 6 {A11R:G -> B27R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B27R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:G -> B28R:A: outward } 0 9 {B28R:A -> A11R:G: outward } 0 10 {A12R:C -> A13R:U: adjacent_5p upward } 0 11 {A13R:U -> A12R:C: adjacent_3p downward } 0 12 {A12R:C -> B26R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B26R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A13R:U -> B25R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {B25R:G -> A13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {B25R:G -> B26R:G: adjacent_5p upward } 0 17 {B26R:G -> B25R:G: adjacent_3p downward } 0 18 {B26R:G -> B27R:C: adjacent_5p upward } 0 19 {B27R:C -> B26R:G: adjacent_3p downward } 0 20 {B27R:C -> B28R:A: adjacent_5p upward } 0 21 {B28R:A -> B27R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A11R:G 0 1 A12R:C 0 2 A13R:U 0 3 A14R:G 0 4 B24R:C 0 5 B25R:G 0 6 B26R:G 0 7 B27R:C 0 [Edges] 0 {A11R:G -> A12R:C: adjacent_5p upward } 0 1 {A12R:C -> A11R:G: adjacent_3p downward } 0 2 {A11R:G -> B27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B27R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:C -> A13R:U: adjacent_5p upward } 0 5 {A13R:U -> A12R:C: adjacent_3p downward } 0 6 {A12R:C -> B26R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B26R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:U -> A14R:G: adjacent_5p } 0 9 {A14R:G -> A13R:U: adjacent_3p } 0 10 {A13R:U -> B25R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B25R:G -> A13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A14R:G -> B24R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B24R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:G -> B25R:G: outward } 0 15 {B25R:G -> A14R:G: outward } 0 16 {B24R:C -> B25R:G: adjacent_5p } 0 17 {B25R:G -> B24R:C: adjacent_3p } 0 18 {B25R:G -> B26R:G: adjacent_5p upward } 0 19 {B26R:G -> B25R:G: adjacent_3p downward } 0 20 {B26R:G -> B27R:C: adjacent_5p upward } 0 21 {B27R:C -> B26R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A12R:C 0 1 A13R:U 0 2 A14R:G 0 3 A15R:A 0 4 B23R:A 0 5 B24R:C 0 6 B25R:G 0 7 B26R:G 0 [Edges] 0 {A12R:C -> A13R:U: adjacent_5p upward } 0 1 {A13R:U -> A12R:C: adjacent_3p downward } 0 2 {A12R:C -> B26R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B26R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:U -> A14R:G: adjacent_5p } 0 5 {A14R:G -> A13R:U: adjacent_3p } 0 6 {A13R:U -> B25R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B25R:G -> A13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A14R:G -> A15R:A: adjacent_5p upward } 0 9 {A15R:A -> A14R:G: adjacent_3p downward } 0 10 {A14R:G -> B24R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B24R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:G -> B25R:G: outward } 0 13 {B25R:G -> A14R:G: outward } 0 14 {A15R:A -> B23R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 15 {B23R:A -> A15R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 16 {B23R:A -> B24R:C: adjacent_5p upward } 0 17 {B24R:C -> B23R:A: adjacent_3p downward } 0 18 {B24R:C -> B25R:G: adjacent_5p } 0 19 {B25R:G -> B24R:C: adjacent_3p } 0 20 {B25R:G -> B26R:G: adjacent_5p upward } 0 21 {B26R:G -> B25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A17R:G 0 1 A18R:U 0 2 A19R:G 0 3 A20R:C 0 4 B19R:G 0 5 B20R:C 0 6 B21R:A 0 7 B22R:C 0 [Edges] 0 {A17R:G -> A18R:U: adjacent_5p upward } 0 1 {A18R:U -> A17R:G: adjacent_3p downward } 0 2 {A17R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B22R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A18R:U -> A19R:G: adjacent_5p upward } 0 5 {A19R:G -> A18R:U: adjacent_3p downward } 0 6 {A18R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B21R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A19R:G -> A20R:C: adjacent_5p upward } 0 9 {A20R:C -> A19R:G: adjacent_3p downward } 0 10 {A19R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B20R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A19R:G -> B21R:A: outward } 0 13 {B21R:A -> A19R:G: outward } 0 14 {A20R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B19R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B19R:G -> B20R:C: adjacent_5p upward } 0 17 {B20R:C -> B19R:G: adjacent_3p downward } 0 18 {B20R:C -> B21R:A: adjacent_5p upward } 0 19 {B21R:A -> B20R:C: adjacent_3p downward } 0 20 {B21R:A -> B22R:C: adjacent_5p upward } 0 21 {B22R:C -> B21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A18R:U 0 1 A19R:G 0 2 A20R:C 0 3 A21R:A 0 4 B18R:U 0 5 B19R:G 0 6 B20R:C 0 7 B21R:A 0 [Edges] 0 {A18R:U -> A19R:G: adjacent_5p upward } 0 1 {A19R:G -> A18R:U: adjacent_3p downward } 0 2 {A18R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B21R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A19R:G -> A20R:C: adjacent_5p upward } 0 5 {A20R:C -> A19R:G: adjacent_3p downward } 0 6 {A19R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B20R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A19R:G -> B21R:A: outward } 0 9 {B21R:A -> A19R:G: outward } 0 10 {A20R:C -> A21R:A: adjacent_5p upward } 0 11 {A21R:A -> A20R:C: adjacent_3p downward } 0 12 {A20R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B19R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A21R:A -> B18R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B18R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A21R:A -> B19R:G: outward } 0 17 {B19R:G -> A21R:A: outward } 0 18 {B18R:U -> B19R:G: adjacent_5p upward } 0 19 {B19R:G -> B18R:U: adjacent_3p downward } 0 20 {B19R:G -> B20R:C: adjacent_5p upward } 0 21 {B20R:C -> B19R:G: adjacent_3p downward } 0 22 {B20R:C -> B21R:A: adjacent_5p upward } 0 23 {B21R:A -> B20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A19R:G 0 1 A20R:C 0 2 A21R:A 0 3 A22R:C 0 4 B17R:G 0 5 B18R:U 0 6 B19R:G 0 7 B20R:C 0 [Edges] 0 {A19R:G -> A20R:C: adjacent_5p upward } 0 1 {A20R:C -> A19R:G: adjacent_3p downward } 0 2 {A19R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B20R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A20R:C -> A21R:A: adjacent_5p upward } 0 5 {A21R:A -> A20R:C: adjacent_3p downward } 0 6 {A20R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B19R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A21R:A -> A22R:C: adjacent_5p upward } 0 9 {A22R:C -> A21R:A: adjacent_3p downward } 0 10 {A21R:A -> B17R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {B17R:G -> A21R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {A21R:A -> B18R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B18R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A21R:A -> B19R:G: outward } 0 15 {B19R:G -> A21R:A: outward } 0 16 {A22R:C -> B17R:G: pairing antiparallel cis Ww/Ww } 0 17 {B17R:G -> A22R:C: pairing antiparallel cis Ww/Ww } 0 18 {B17R:G -> B18R:U: adjacent_5p upward } 0 19 {B18R:U -> B17R:G: adjacent_3p downward } 0 20 {B18R:U -> B19R:G: adjacent_5p upward } 0 21 {B19R:G -> B18R:U: adjacent_3p downward } 0 22 {B19R:G -> B20R:C: adjacent_5p upward } 0 23 {B20R:C -> B19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 12 14 . 3 . . 9 . 16 . . . 4 . . 11 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 . . . . . 23 . [GraphModel] [Vertices] 0 A21R:A 0 1 A22R:C 0 2 A23R:A 0 3 A24R:C 0 4 B14R:G 0 5 B15R:A 0 6 B16R:A 0 7 B17R:G 0 [Edges] 0 {A21R:A -> A22R:C: adjacent_5p upward } 0 1 {A22R:C -> A21R:A: adjacent_3p downward } 0 2 {A21R:A -> B17R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B17R:G -> A21R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A22R:C -> A23R:A: adjacent_5p upward } 0 5 {A23R:A -> A22R:C: adjacent_3p downward } 0 6 {A22R:C -> B17R:G: pairing antiparallel cis Ww/Ww } 0 7 {B17R:G -> A22R:C: pairing antiparallel cis Ww/Ww } 0 8 {A23R:A -> A24R:C: adjacent_5p upward } 0 9 {A24R:C -> A23R:A: adjacent_3p downward } 0 10 {A23R:A -> B15R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 11 {B15R:A -> A23R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 12 {A24R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B14R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B14R:G -> B15R:A: adjacent_5p upward } 0 15 {B15R:A -> B14R:G: adjacent_3p downward } 0 16 {B15R:A -> B16R:A: adjacent_5p upward } 0 17 {B16R:A -> B15R:A: adjacent_3p downward } 0 18 {B16R:A -> B17R:G: adjacent_5p upward } 0 19 {B17R:G -> B16R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . 6 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . . . . . 17 . 18 7 3 7 . . . . 19 . [GraphModel] [Vertices] 0 A23R:A 0 1 A24R:C 0 2 A25R:G 0 3 A26R:G 0 4 B12R:C 0 5 B13R:U 0 6 B14R:G 0 7 B15R:A 0 [Edges] 0 {A23R:A -> A24R:C: adjacent_5p upward } 0 1 {A24R:C -> A23R:A: adjacent_3p downward } 0 2 {A23R:A -> B15R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 3 {B15R:A -> A23R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 4 {A24R:C -> A25R:G: adjacent_5p upward } 0 5 {A25R:G -> A24R:C: adjacent_3p downward } 0 6 {A24R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B14R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A25R:G -> A26R:G: adjacent_5p upward } 0 9 {A26R:G -> A25R:G: adjacent_3p downward } 0 10 {A25R:G -> B13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B13R:U -> A25R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A25R:G -> B14R:G: outward } 0 13 {B14R:G -> A25R:G: outward } 0 14 {A26R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B12R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B12R:C -> B13R:U: adjacent_5p upward } 0 17 {B13R:U -> B12R:C: adjacent_3p downward } 0 18 {B13R:U -> B14R:G: adjacent_5p } 0 19 {B14R:G -> B13R:U: adjacent_3p } 0 20 {B14R:G -> B15R:A: adjacent_5p upward } 0 21 {B15R:A -> B14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A24R:C 0 1 A25R:G 0 2 A26R:G 0 3 A27R:C 0 4 B11R:G 0 5 B12R:C 0 6 B13R:U 0 7 B14R:G 0 [Edges] 0 {A24R:C -> A25R:G: adjacent_5p upward } 0 1 {A25R:G -> A24R:C: adjacent_3p downward } 0 2 {A24R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B14R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A25R:G -> A26R:G: adjacent_5p upward } 0 5 {A26R:G -> A25R:G: adjacent_3p downward } 0 6 {A25R:G -> B13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B13R:U -> A25R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A25R:G -> B14R:G: outward } 0 9 {B14R:G -> A25R:G: outward } 0 10 {A26R:G -> A27R:C: adjacent_5p upward } 0 11 {A27R:C -> A26R:G: adjacent_3p downward } 0 12 {A26R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B12R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A27R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B11R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B11R:G -> B12R:C: adjacent_5p upward } 0 17 {B12R:C -> B11R:G: adjacent_3p downward } 0 18 {B12R:C -> B13R:U: adjacent_5p upward } 0 19 {B13R:U -> B12R:C: adjacent_3p downward } 0 20 {B13R:U -> B14R:G: adjacent_5p } 0 21 {B14R:G -> B13R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A25R:G 0 1 A26R:G 0 2 A27R:C 0 3 A28R:A 0 4 B10R:U 0 5 B11R:G 0 6 B12R:C 0 7 B13R:U 0 [Edges] 0 {A25R:G -> A26R:G: adjacent_5p upward } 0 1 {A26R:G -> A25R:G: adjacent_3p downward } 0 2 {A25R:G -> B13R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B13R:U -> A25R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A26R:G -> A27R:C: adjacent_5p upward } 0 5 {A27R:C -> A26R:G: adjacent_3p downward } 0 6 {A26R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A27R:C -> A28R:A: adjacent_5p upward } 0 9 {A28R:A -> A27R:C: adjacent_3p downward } 0 10 {A27R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B11R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A28R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B10R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A28R:A -> B11R:G: outward } 0 15 {B11R:G -> A28R:A: outward } 0 16 {B10R:U -> B11R:G: adjacent_5p } 0 17 {B11R:G -> B10R:U: adjacent_3p } 0 18 {B11R:G -> B12R:C: adjacent_5p upward } 0 19 {B12R:C -> B11R:G: adjacent_3p downward } 0 20 {B12R:C -> B13R:U: adjacent_5p upward } 0 21 {B13R:U -> B12R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A26R:G 0 1 A27R:C 0 2 A28R:A 0 3 A29R:A 0 4 B9R:U 0 5 B10R:U 0 6 B11R:G 0 7 B12R:C 0 [Edges] 0 {A26R:G -> A27R:C: adjacent_5p upward } 0 1 {A27R:C -> A26R:G: adjacent_3p downward } 0 2 {A26R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B12R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A27R:C -> A28R:A: adjacent_5p upward } 0 5 {A28R:A -> A27R:C: adjacent_3p downward } 0 6 {A27R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B11R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A28R:A -> A29R:A: adjacent_5p upward } 0 9 {A29R:A -> A28R:A: adjacent_3p downward } 0 10 {A28R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B10R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A28R:A -> B11R:G: outward } 0 13 {B11R:G -> A28R:A: outward } 0 14 {A29R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B9R:U -> A29R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B9R:U -> B10R:U: adjacent_5p upward } 0 17 {B10R:U -> B9R:U: adjacent_3p downward } 0 18 {B10R:U -> B11R:G: adjacent_5p } 0 19 {B11R:G -> B10R:U: adjacent_3p } 0 20 {B11R:G -> B12R:C: adjacent_5p upward } 0 21 {B12R:C -> B11R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A27R:C 0 1 A28R:A 0 2 A29R:A 0 3 A30R:G 0 4 B8R:C 0 5 B9R:U 0 6 B10R:U 0 7 B11R:G 0 [Edges] 0 {A27R:C -> A28R:A: adjacent_5p upward } 0 1 {A28R:A -> A27R:C: adjacent_3p downward } 0 2 {A27R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B11R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A28R:A -> A29R:A: adjacent_5p upward } 0 5 {A29R:A -> A28R:A: adjacent_3p downward } 0 6 {A28R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B10R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A28R:A -> B11R:G: outward } 0 9 {B11R:G -> A28R:A: outward } 0 10 {A29R:A -> A30R:G: adjacent_5p upward } 0 11 {A30R:G -> A29R:A: adjacent_3p downward } 0 12 {A29R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B9R:U -> A29R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A30R:G -> B8R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B8R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B8R:C -> B9R:U: adjacent_5p upward } 0 17 {B9R:U -> B8R:C: adjacent_3p downward } 0 18 {B9R:U -> B10R:U: adjacent_5p upward } 0 19 {B10R:U -> B9R:U: adjacent_3p downward } 0 20 {B10R:U -> B11R:G: adjacent_5p } 0 21 {B11R:G -> B10R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A28R:A 0 1 A29R:A 0 2 A30R:G 0 3 A31R:A 0 4 B7R:G 0 5 B8R:C 0 6 B9R:U 0 7 B10R:U 0 [Edges] 0 {A28R:A -> A29R:A: adjacent_5p upward } 0 1 {A29R:A -> A28R:A: adjacent_3p downward } 0 2 {A28R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B10R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A29R:A -> A30R:G: adjacent_5p upward } 0 5 {A30R:G -> A29R:A: adjacent_3p downward } 0 6 {A29R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B9R:U -> A29R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A30R:G -> A31R:A: adjacent_5p upward } 0 9 {A31R:A -> A30R:G: adjacent_3p downward } 0 10 {A30R:G -> B8R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B8R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A31R:A -> B7R:G: pairing antiparallel cis VIII Ww/Ww } 0 13 {B7R:G -> A31R:A: pairing antiparallel cis VIII Ww/Ww } 0 14 {B7R:G -> B8R:C: adjacent_5p upward } 0 15 {B8R:C -> B7R:G: adjacent_3p downward } 0 16 {B8R:C -> B9R:U: adjacent_5p upward } 0 17 {B9R:U -> B8R:C: adjacent_3p downward } 0 18 {B9R:U -> B10R:U: adjacent_5p upward } 0 19 {B10R:U -> B9R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A34R:C 0 1 A35R:G 0 2 A36R:A 0 3 A37R:C 0 4 B3R:G 0 5 B4R:U 0 6 B5R:C 0 7 B6R:G 0 [Edges] 0 {A34R:C -> A35R:G: adjacent_5p upward } 0 1 {A35R:G -> A34R:C: adjacent_3p downward } 0 2 {A34R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B6R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A35R:G -> A36R:A: adjacent_5p upward } 0 5 {A36R:A -> A35R:G: adjacent_3p downward } 0 6 {A35R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B5R:C -> A35R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A35R:G -> B6R:G: outward } 0 9 {B6R:G -> A35R:G: outward } 0 10 {A36R:A -> A37R:C: adjacent_5p upward } 0 11 {A37R:C -> A36R:A: adjacent_3p downward } 0 12 {A36R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B4R:U -> A36R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A37R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B3R:G -> A37R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B3R:G -> B4R:U: adjacent_5p upward } 0 17 {B4R:U -> B3R:G: adjacent_3p downward } 0 18 {B4R:U -> B5R:C: adjacent_5p upward } 0 19 {B5R:C -> B4R:U: adjacent_3p downward } 0 20 {B5R:C -> B6R:G: adjacent_5p upward } 0 21 {B6R:G -> B5R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A35R:G 0 1 A36R:A 0 2 A37R:C 0 3 A38R:C 0 4 B2R:G 0 5 B3R:G 0 6 B4R:U 0 7 B5R:C 0 [Edges] 0 {A35R:G -> A36R:A: adjacent_5p upward } 0 1 {A36R:A -> A35R:G: adjacent_3p downward } 0 2 {A35R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B5R:C -> A35R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A36R:A -> A37R:C: adjacent_5p upward } 0 5 {A37R:C -> A36R:A: adjacent_3p downward } 0 6 {A36R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B4R:U -> A36R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A37R:C -> A38R:C: adjacent_5p upward } 0 9 {A38R:C -> A37R:C: adjacent_3p downward } 0 10 {A37R:C -> B3R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B3R:G -> A37R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A38R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B2R:G -> A38R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B2R:G -> B3R:G: adjacent_5p upward } 0 15 {B3R:G -> B2R:G: adjacent_3p downward } 0 16 {B3R:G -> B4R:U: adjacent_5p upward } 0 17 {B4R:U -> B3R:G: adjacent_3p downward } 0 18 {B4R:U -> B5R:C: adjacent_5p upward } 0 19 {B5R:C -> B4R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:A 0 2 A4R:G 0 3 A5R:A 0 4 A19R:U 0 5 A20R:U 0 6 A21R:U 0 7 A22R:C 0 [Edges] 0 {A2R:G -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A21R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:G -> A5R:A: adjacent_5p upward } 0 9 {A5R:A -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> A20R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {A20R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A5R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A19R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A19R:U -> A20R:U: adjacent_5p upward } 0 15 {A20R:U -> A19R:U: adjacent_3p downward } 0 16 {A20R:U -> A21R:U: adjacent_5p upward } 0 17 {A21R:U -> A20R:U: adjacent_3p downward } 0 18 {A21R:U -> A22R:C: adjacent_5p } 0 19 {A22R:C -> A21R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:G 0 2 A5R:A 0 3 A6R:G 0 4 A18R:U 0 5 A19R:U 0 6 A20R:U 0 7 A21R:U 0 [Edges] 0 {A3R:A -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A21R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A20R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A20R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A5R:A -> A6R:G: adjacent_5p upward } 0 9 {A6R:G -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> A18R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {A18R:U -> A5R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {A5R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A19R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A6R:G -> A18R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {A18R:U -> A6R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A18R:U -> A19R:U: adjacent_5p upward } 0 17 {A19R:U -> A18R:U: adjacent_3p downward } 0 18 {A19R:U -> A20R:U: adjacent_5p upward } 0 19 {A20R:U -> A19R:U: adjacent_3p downward } 0 20 {A20R:U -> A21R:U: adjacent_5p upward } 0 21 {A21R:U -> A20R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 10 12 . . 3 . . 9 . 14 . . . 4 . . 11 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:G 0 3 A7R:G 0 4 A17R:C 0 5 A18R:U 0 6 A19R:U 0 7 A20R:U 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A20R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A20R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A5R:A -> A6R:G: adjacent_5p upward } 0 5 {A6R:G -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> A18R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {A18R:U -> A5R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A5R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {A19R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A6R:G -> A7R:G: adjacent_5p upward } 0 11 {A7R:G -> A6R:G: adjacent_3p downward } 0 12 {A6R:G -> A18R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A18R:U -> A6R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A7R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A17R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A17R:C -> A18R:U: adjacent_5p upward } 0 17 {A18R:U -> A17R:C: adjacent_3p downward } 0 18 {A18R:U -> A19R:U: adjacent_5p upward } 0 19 {A19R:U -> A18R:U: adjacent_3p downward } 0 20 {A19R:U -> A20R:U: adjacent_5p upward } 0 21 {A20R:U -> A19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . 6 8 . 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . 7 13 . 17 . 18 . 6 . 9 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:G 0 2 A7R:G 0 3 A8R:C 0 4 A16R:G 0 5 A17R:C 0 6 A18R:U 0 7 A19R:U 0 [Edges] 0 {A5R:A -> A6R:G: adjacent_5p upward } 0 1 {A6R:G -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> A18R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {A18R:U -> A5R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A5R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {A19R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {A6R:G -> A7R:G: adjacent_5p upward } 0 7 {A7R:G -> A6R:G: adjacent_3p downward } 0 8 {A6R:G -> A18R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {A18R:U -> A6R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {A7R:G -> A8R:C: adjacent_5p upward } 0 11 {A8R:C -> A7R:G: adjacent_3p downward } 0 12 {A7R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A8R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A16R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A16R:G -> A17R:C: adjacent_5p upward } 0 17 {A17R:C -> A16R:G: adjacent_3p downward } 0 18 {A17R:C -> A18R:U: adjacent_5p upward } 0 19 {A18R:U -> A17R:C: adjacent_3p downward } 0 20 {A18R:U -> A19R:U: adjacent_5p upward } 0 21 {A19R:U -> A18R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 . 2 . 7 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 3 9 . . . 19 . 20 7 5 . . . . . 21 . [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:G 0 2 A8R:C 0 3 A9R:U 0 4 A15R:A 0 5 A16R:G 0 6 A17R:C 0 7 A18R:U 0 [Edges] 0 {A6R:G -> A7R:G: adjacent_5p upward } 0 1 {A7R:G -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> A18R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A18R:U -> A6R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A7R:G -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:G: adjacent_3p downward } 0 6 {A7R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:C -> A9R:U: adjacent_5p upward } 0 9 {A9R:U -> A8R:C: adjacent_3p downward } 0 10 {A8R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A16R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A15R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A15R:A -> A16R:G: adjacent_5p upward } 0 15 {A16R:G -> A15R:A: adjacent_3p downward } 0 16 {A16R:G -> A17R:C: adjacent_5p upward } 0 17 {A17R:C -> A16R:G: adjacent_3p downward } 0 18 {A17R:C -> A18R:U: adjacent_5p upward } 0 19 {A18R:U -> A17R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:G 0 3 A5R:U 0 4 B42R:U 0 5 B43R:C 0 6 B44R:G 0 7 B45R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B45R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B45R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:G: adjacent_5p } 0 5 {A4R:G -> A3R:C: adjacent_3p } 0 6 {A3R:C -> B44R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B44R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:G: adjacent_3p downward } 0 10 {A4R:G -> B43R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B43R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A4R:G -> B44R:G: outward } 0 13 {B44R:G -> A4R:G: outward } 0 14 {A5R:U -> B42R:U: pairing antiparallel cis one_hbond Wh/Ww } 0 15 {B42R:U -> A5R:U: pairing antiparallel cis one_hbond Ww/Wh } 0 16 {B42R:U -> B43R:C: adjacent_5p } 0 17 {B43R:C -> B42R:U: adjacent_3p } 0 18 {B43R:C -> B44R:G: adjacent_5p upward } 0 19 {B44R:G -> B43R:C: adjacent_3p downward } 0 20 {B44R:G -> B45R:C: adjacent_5p upward } 0 21 {B45R:C -> B44R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 A5R:U 0 3 A6R:C 0 4 B41R:G 0 5 B42R:U 0 6 B43R:C 0 7 B44R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p } 0 1 {A4R:G -> A3R:C: adjacent_3p } 0 2 {A3R:C -> B44R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B44R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B43R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B43R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> B44R:G: outward } 0 9 {B44R:G -> A4R:G: outward } 0 10 {A5R:U -> A6R:C: adjacent_5p upward } 0 11 {A6R:C -> A5R:U: adjacent_3p downward } 0 12 {A5R:U -> B42R:U: pairing antiparallel cis one_hbond Wh/Ww } 0 13 {B42R:U -> A5R:U: pairing antiparallel cis one_hbond Ww/Wh } 0 14 {A6R:C -> B41R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B41R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B41R:G -> B42R:U: adjacent_5p upward } 0 17 {B42R:U -> B41R:G: adjacent_3p downward } 0 18 {B42R:U -> B43R:C: adjacent_5p } 0 19 {B43R:C -> B42R:U: adjacent_3p } 0 20 {B43R:C -> B44R:G: adjacent_5p upward } 0 21 {B44R:G -> B43R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:A 0 2 A10R:C 0 3 A11R:C 0 4 B35R:G 0 5 B36R:G 0 6 B37R:U 0 7 B38R:G 0 [Edges] 0 {A8R:C -> A9R:A: adjacent_5p } 0 1 {A9R:A -> A8R:C: adjacent_3p } 0 2 {A8R:C -> B38R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B38R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:A -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:A: adjacent_3p downward } 0 6 {A9R:A -> B37R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B37R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:A -> B38R:G: outward } 0 9 {B38R:G -> A9R:A: outward } 0 10 {A10R:C -> A11R:C: adjacent_5p } 0 11 {A11R:C -> A10R:C: adjacent_3p } 0 12 {A10R:C -> B36R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B36R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A11R:C -> B35R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B35R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B35R:G -> B36R:G: adjacent_5p upward } 0 17 {B36R:G -> B35R:G: adjacent_3p downward } 0 18 {B36R:G -> B37R:U: adjacent_5p upward } 0 19 {B37R:U -> B36R:G: adjacent_3p downward } 0 20 {B37R:U -> B38R:G: adjacent_5p upward } 0 21 {B38R:G -> B37R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:A 0 1 A10R:C 0 2 A11R:C 0 3 A12R:G 0 4 B34R:C 0 5 B35R:G 0 6 B36R:G 0 7 B37R:U 0 [Edges] 0 {A9R:A -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:A: adjacent_3p downward } 0 2 {A9R:A -> B37R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B37R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A10R:C -> A11R:C: adjacent_5p } 0 5 {A11R:C -> A10R:C: adjacent_3p } 0 6 {A10R:C -> B36R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B36R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:C -> A12R:G: adjacent_5p } 0 9 {A12R:G -> A11R:C: adjacent_3p } 0 10 {A11R:C -> B35R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B35R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:G -> B34R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B34R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A12R:G -> B35R:G: outward } 0 15 {B35R:G -> A12R:G: outward } 0 16 {B34R:C -> B35R:G: adjacent_5p upward } 0 17 {B35R:G -> B34R:C: adjacent_3p downward } 0 18 {B35R:G -> B36R:G: adjacent_5p upward } 0 19 {B36R:G -> B35R:G: adjacent_3p downward } 0 20 {B36R:G -> B37R:U: adjacent_5p upward } 0 21 {B37R:U -> B36R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:C 0 1 A11R:C 0 2 A12R:G 0 3 A13R:G 0 4 B33R:C 0 5 B34R:C 0 6 B35R:G 0 7 B36R:G 0 [Edges] 0 {A10R:C -> A11R:C: adjacent_5p } 0 1 {A11R:C -> A10R:C: adjacent_3p } 0 2 {A10R:C -> B36R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B36R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:C -> A12R:G: adjacent_5p } 0 5 {A12R:G -> A11R:C: adjacent_3p } 0 6 {A11R:C -> B35R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B35R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> A13R:G: adjacent_5p upward } 0 9 {A13R:G -> A12R:G: adjacent_3p downward } 0 10 {A12R:G -> B34R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B34R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:G -> B35R:G: outward } 0 13 {B35R:G -> A12R:G: outward } 0 14 {A13R:G -> B33R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B33R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B33R:C -> B34R:C: adjacent_5p upward } 0 17 {B34R:C -> B33R:C: adjacent_3p downward } 0 18 {B34R:C -> B35R:G: adjacent_5p upward } 0 19 {B35R:G -> B34R:C: adjacent_3p downward } 0 20 {B35R:G -> B36R:G: adjacent_5p upward } 0 21 {B36R:G -> B35R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:G 0 2 A13R:G 0 3 A14R:U 0 4 B32R:A 0 5 B33R:C 0 6 B34R:C 0 7 B35R:G 0 [Edges] 0 {A11R:C -> A12R:G: adjacent_5p } 0 1 {A12R:G -> A11R:C: adjacent_3p } 0 2 {A11R:C -> B35R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B35R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:G -> A13R:G: adjacent_5p upward } 0 5 {A13R:G -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> B34R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B34R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> B35R:G: outward } 0 9 {B35R:G -> A12R:G: outward } 0 10 {A13R:G -> A14R:U: adjacent_5p upward } 0 11 {A14R:U -> A13R:G: adjacent_3p downward } 0 12 {A13R:G -> B33R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B33R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:U -> B32R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B32R:A -> A14R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B32R:A -> B33R:C: adjacent_5p upward } 0 17 {B33R:C -> B32R:A: adjacent_3p downward } 0 18 {B33R:C -> B34R:C: adjacent_5p upward } 0 19 {B34R:C -> B33R:C: adjacent_3p downward } 0 20 {B34R:C -> B35R:G: adjacent_5p upward } 0 21 {B35R:G -> B34R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:G 0 2 A14R:U 0 3 A15R:G 0 4 B31R:C 0 5 B32R:A 0 6 B33R:C 0 7 B34R:C 0 [Edges] 0 {A12R:G -> A13R:G: adjacent_5p upward } 0 1 {A13R:G -> A12R:G: adjacent_3p downward } 0 2 {A12R:G -> B34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B34R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:G -> A14R:U: adjacent_5p upward } 0 5 {A14R:U -> A13R:G: adjacent_3p downward } 0 6 {A13R:G -> B33R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B33R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:U -> A15R:G: adjacent_5p upward } 0 9 {A15R:G -> A14R:U: adjacent_3p downward } 0 10 {A14R:U -> B32R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B32R:A -> A14R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A15R:G -> B31R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B31R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A15R:G -> B32R:A: outward } 0 15 {B32R:A -> A15R:G: outward } 0 16 {B31R:C -> B32R:A: adjacent_5p } 0 17 {B32R:A -> B31R:C: adjacent_3p } 0 18 {B32R:A -> B33R:C: adjacent_5p upward } 0 19 {B33R:C -> B32R:A: adjacent_3p downward } 0 20 {B33R:C -> B34R:C: adjacent_5p upward } 0 21 {B34R:C -> B33R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A18R:G 0 1 A19R:U 0 2 A20R:C 0 3 A21R:G 0 4 B26R:C 0 5 B27R:G 0 6 B28R:U 0 7 B29R:C 0 [Edges] 0 {A18R:G -> A19R:U: adjacent_5p upward } 0 1 {A19R:U -> A18R:G: adjacent_3p downward } 0 2 {A18R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B29R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A19R:U -> A20R:C: adjacent_5p } 0 5 {A20R:C -> A19R:U: adjacent_3p } 0 6 {A19R:U -> B28R:U: pairing antiparallel cis one_hbond Ww/Wh } 0 7 {B28R:U -> A19R:U: pairing antiparallel cis one_hbond Wh/Ww } 0 8 {A20R:C -> A21R:G: adjacent_5p upward } 0 9 {A21R:G -> A20R:C: adjacent_3p downward } 0 10 {A20R:C -> B27R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B27R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A21R:G -> B26R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B26R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A21R:G -> B27R:G: outward } 0 15 {B27R:G -> A21R:G: outward } 0 16 {B26R:C -> B27R:G: adjacent_5p } 0 17 {B27R:G -> B26R:C: adjacent_3p } 0 18 {B27R:G -> B28R:U: adjacent_5p upward } 0 19 {B28R:U -> B27R:G: adjacent_3p downward } 0 20 {B28R:U -> B29R:C: adjacent_5p upward } 0 21 {B29R:C -> B28R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:C 0 3 A5R:U 0 4 A30R:A 0 5 A31R:G 0 6 A32R:G 0 7 A33R:U 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A33R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A33R:U -> A2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A3R:C -> A4R:C: adjacent_5p } 0 5 {A4R:C -> A3R:C: adjacent_3p } 0 6 {A3R:C -> A32R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A32R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:U: adjacent_5p } 0 9 {A5R:U -> A4R:C: adjacent_3p } 0 10 {A4R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A31R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:U -> A30R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A30R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A30R:A -> A31R:G: adjacent_5p upward } 0 15 {A31R:G -> A30R:A: adjacent_3p downward } 0 16 {A31R:G -> A32R:G: adjacent_5p upward } 0 17 {A32R:G -> A31R:G: adjacent_3p downward } 0 18 {A32R:G -> A33R:U: adjacent_5p upward } 0 19 {A33R:U -> A32R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:C 0 2 A5R:U 0 3 A6R:U 0 4 A29R:A 0 5 A30R:A 0 6 A31R:G 0 7 A32R:G 0 [Edges] 0 {A3R:C -> A4R:C: adjacent_5p } 0 1 {A4R:C -> A3R:C: adjacent_3p } 0 2 {A3R:C -> A32R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A32R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:U: adjacent_5p } 0 5 {A5R:U -> A4R:C: adjacent_3p } 0 6 {A4R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A31R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> A6R:U: adjacent_5p upward } 0 9 {A6R:U -> A5R:U: adjacent_3p downward } 0 10 {A5R:U -> A30R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A30R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:U -> A29R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A29R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A29R:A -> A30R:A: adjacent_5p upward } 0 15 {A30R:A -> A29R:A: adjacent_3p downward } 0 16 {A30R:A -> A31R:G: adjacent_5p upward } 0 17 {A31R:G -> A30R:A: adjacent_3p downward } 0 18 {A31R:G -> A32R:G: adjacent_5p upward } 0 19 {A32R:G -> A31R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:U 0 1 A7R:A 0 2 A8R:G 0 3 A9R:G 0 4 A26R:C 0 5 A27R:G 0 6 A28R:A 0 7 A29R:A 0 [Edges] 0 {A6R:U -> A7R:A: adjacent_5p } 0 1 {A7R:A -> A6R:U: adjacent_3p } 0 2 {A6R:U -> A29R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A29R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:A -> A8R:G: adjacent_5p } 0 5 {A8R:G -> A7R:A: adjacent_3p } 0 6 {A8R:G -> A9R:G: adjacent_5p } 0 7 {A9R:G -> A8R:G: adjacent_3p } 0 8 {A9R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A26R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A26R:C -> A27R:G: adjacent_5p } 0 11 {A27R:G -> A26R:C: adjacent_3p } 0 12 {A27R:G -> A28R:A: adjacent_5p } 0 13 {A28R:A -> A27R:G: adjacent_3p } 0 14 {A28R:A -> A29R:A: adjacent_5p } 0 15 {A29R:A -> A28R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . . . . 3 . . 7 . 8 . . . 4 . . . 9 . 10 . . 5 . . . . 11 . 12 . 6 . . . . . 13 . 14 7 3 . . . . . 15 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:A 0 2 A11R:A 0 3 A12R:A 0 4 A23R:U 0 5 A24R:G 0 6 A25R:C 0 7 A26R:C 0 [Edges] 0 {A9R:G -> A10R:A: adjacent_5p } 0 1 {A10R:A -> A9R:G: adjacent_3p } 0 2 {A9R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A26R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:A -> A11R:A: adjacent_5p } 0 5 {A11R:A -> A10R:A: adjacent_3p } 0 6 {A10R:A -> A25R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 7 {A25R:C -> A10R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 8 {A11R:A -> A12R:A: adjacent_5p upward } 0 9 {A12R:A -> A11R:A: adjacent_3p downward } 0 10 {A11R:A -> A24R:G: pairing antiparallel cis VIII Ww/Ww } 0 11 {A24R:G -> A11R:A: pairing antiparallel cis VIII Ww/Ww } 0 12 {A12R:A -> A23R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A23R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A23R:U -> A24R:G: adjacent_5p upward } 0 15 {A24R:G -> A23R:U: adjacent_3p downward } 0 16 {A24R:G -> A25R:C: adjacent_5p upward } 0 17 {A25R:C -> A24R:G: adjacent_3p downward } 0 18 {A25R:C -> A26R:C: adjacent_5p } 0 19 {A26R:C -> A25R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:A 0 1 A11R:A 0 2 A12R:A 0 3 A13R:C 0 4 A22R:G 0 5 A23R:U 0 6 A24R:G 0 7 A25R:C 0 [Edges] 0 {A10R:A -> A11R:A: adjacent_5p } 0 1 {A11R:A -> A10R:A: adjacent_3p } 0 2 {A10R:A -> A25R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 3 {A25R:C -> A10R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 4 {A11R:A -> A12R:A: adjacent_5p upward } 0 5 {A12R:A -> A11R:A: adjacent_3p downward } 0 6 {A11R:A -> A24R:G: pairing antiparallel cis VIII Ww/Ww } 0 7 {A24R:G -> A11R:A: pairing antiparallel cis VIII Ww/Ww } 0 8 {A12R:A -> A13R:C: adjacent_5p upward } 0 9 {A13R:C -> A12R:A: adjacent_3p downward } 0 10 {A12R:A -> A23R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A23R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A13R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A22R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A22R:G -> A23R:U: adjacent_5p upward } 0 15 {A23R:U -> A22R:G: adjacent_3p downward } 0 16 {A23R:U -> A24R:G: adjacent_5p upward } 0 17 {A24R:G -> A23R:U: adjacent_3p downward } 0 18 {A24R:G -> A25R:C: adjacent_5p upward } 0 19 {A25R:C -> A24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:A 0 1 A12R:A 0 2 A13R:C 0 3 A14R:A 0 4 A21R:U 0 5 A22R:G 0 6 A23R:U 0 7 A24R:G 0 [Edges] 0 {A11R:A -> A12R:A: adjacent_5p upward } 0 1 {A12R:A -> A11R:A: adjacent_3p downward } 0 2 {A11R:A -> A24R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {A24R:G -> A11R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A12R:A -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:A: adjacent_3p downward } 0 6 {A12R:A -> A23R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A23R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A13R:C -> A14R:A: adjacent_5p upward } 0 9 {A14R:A -> A13R:C: adjacent_3p downward } 0 10 {A13R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A22R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A21R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A14R:A -> A22R:G: outward } 0 15 {A22R:G -> A14R:A: outward } 0 16 {A21R:U -> A22R:G: adjacent_5p upward } 0 17 {A22R:G -> A21R:U: adjacent_3p downward } 0 18 {A22R:G -> A23R:U: adjacent_5p upward } 0 19 {A23R:U -> A22R:G: adjacent_3p downward } 0 20 {A23R:U -> A24R:G: adjacent_5p upward } 0 21 {A24R:G -> A23R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A12R:A 0 1 A13R:C 0 2 A14R:A 0 3 A15R:G 0 4 A20R:C 0 5 A21R:U 0 6 A22R:G 0 7 A23R:U 0 [Edges] 0 {A12R:A -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:A: adjacent_3p downward } 0 2 {A12R:A -> A23R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A23R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A13R:C -> A14R:A: adjacent_5p upward } 0 5 {A14R:A -> A13R:C: adjacent_3p downward } 0 6 {A13R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:A -> A15R:G: adjacent_5p upward } 0 9 {A15R:G -> A14R:A: adjacent_3p downward } 0 10 {A14R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A21R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A14R:A -> A22R:G: outward } 0 13 {A22R:G -> A14R:A: outward } 0 14 {A15R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A20R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A20R:C -> A21R:U: adjacent_5p } 0 17 {A21R:U -> A20R:C: adjacent_3p } 0 18 {A21R:U -> A22R:G: adjacent_5p upward } 0 19 {A22R:G -> A21R:U: adjacent_3p downward } 0 20 {A22R:G -> A23R:U: adjacent_5p upward } 0 21 {A23R:U -> A22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A13R:C 0 1 A14R:A 0 2 A15R:G 0 3 A16R:U 0 4 A19R:G 0 5 A20R:C 0 6 A21R:U 0 7 A22R:G 0 [Edges] 0 {A13R:C -> A14R:A: adjacent_5p upward } 0 1 {A14R:A -> A13R:C: adjacent_3p downward } 0 2 {A13R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A14R:A -> A15R:G: adjacent_5p upward } 0 5 {A15R:G -> A14R:A: adjacent_3p downward } 0 6 {A14R:A -> A21R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A21R:U -> A14R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A14R:A -> A22R:G: outward } 0 9 {A22R:G -> A14R:A: outward } 0 10 {A15R:G -> A16R:U: adjacent_5p upward } 0 11 {A16R:U -> A15R:G: adjacent_3p downward } 0 12 {A15R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A20R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A16R:U -> A19R:G: pairing parallel trans one_hbond Ws/Ww } 0 15 {A19R:G -> A16R:U: pairing parallel trans one_hbond Ww/Ws } 0 16 {A19R:G -> A20R:C: adjacent_5p outward } 0 17 {A20R:C -> A19R:G: adjacent_3p outward } 0 18 {A20R:C -> A21R:U: adjacent_5p } 0 19 {A21R:U -> A20R:C: adjacent_3p } 0 20 {A21R:U -> A22R:G: adjacent_5p upward } 0 21 {A22R:G -> A21R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C1R:A 0 1 C2R:A 0 2 C3R:A 0 3 C4R:G 0 4 C23R:C 0 5 C24R:U 0 6 C25R:U 0 7 C26R:U 0 [Edges] 0 {C1R:A -> C2R:A: adjacent_5p upward } 0 1 {C2R:A -> C1R:A: adjacent_3p downward } 0 2 {C1R:A -> C26R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C26R:U -> C1R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C2R:A -> C3R:A: adjacent_5p upward } 0 5 {C3R:A -> C2R:A: adjacent_3p downward } 0 6 {C2R:A -> C25R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C25R:U -> C2R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C3R:A -> C4R:G: adjacent_5p upward } 0 9 {C4R:G -> C3R:A: adjacent_3p downward } 0 10 {C3R:A -> C24R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C24R:U -> C3R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C4R:G -> C23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C23R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C23R:C -> C24R:U: adjacent_5p upward } 0 15 {C24R:U -> C23R:C: adjacent_3p downward } 0 16 {C24R:U -> C25R:U: adjacent_5p } 0 17 {C25R:U -> C24R:U: adjacent_3p } 0 18 {C25R:U -> C26R:U: adjacent_5p upward } 0 19 {C26R:U -> C25R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C2R:A 0 1 C3R:A 0 2 C4R:G 0 3 C5R:G 0 4 C22R:C 0 5 C23R:C 0 6 C24R:U 0 7 C25R:U 0 [Edges] 0 {C2R:A -> C3R:A: adjacent_5p upward } 0 1 {C3R:A -> C2R:A: adjacent_3p downward } 0 2 {C2R:A -> C25R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C25R:U -> C2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C3R:A -> C4R:G: adjacent_5p upward } 0 5 {C4R:G -> C3R:A: adjacent_3p downward } 0 6 {C3R:A -> C24R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C24R:U -> C3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C4R:G -> C5R:G: adjacent_5p upward } 0 9 {C5R:G -> C4R:G: adjacent_3p downward } 0 10 {C4R:G -> C23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C23R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C5R:G -> C22R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C22R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C22R:C -> C23R:C: adjacent_5p } 0 15 {C23R:C -> C22R:C: adjacent_3p } 0 16 {C23R:C -> C24R:U: adjacent_5p upward } 0 17 {C24R:U -> C23R:C: adjacent_3p downward } 0 18 {C24R:U -> C25R:U: adjacent_5p } 0 19 {C25R:U -> C24R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C3R:A 0 1 C4R:G 0 2 C5R:G 0 3 C6R:U 0 4 C21R:G 0 5 C22R:C 0 6 C23R:C 0 7 C24R:U 0 [Edges] 0 {C3R:A -> C4R:G: adjacent_5p upward } 0 1 {C4R:G -> C3R:A: adjacent_3p downward } 0 2 {C3R:A -> C24R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C24R:U -> C3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C4R:G -> C5R:G: adjacent_5p upward } 0 5 {C5R:G -> C4R:G: adjacent_3p downward } 0 6 {C4R:G -> C23R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C23R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C5R:G -> C6R:U: adjacent_5p upward } 0 9 {C6R:U -> C5R:G: adjacent_3p downward } 0 10 {C5R:G -> C22R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C22R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C6R:U -> C21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {C21R:G -> C6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {C21R:G -> C22R:C: adjacent_5p upward } 0 15 {C22R:C -> C21R:G: adjacent_3p downward } 0 16 {C22R:C -> C23R:C: adjacent_5p } 0 17 {C23R:C -> C22R:C: adjacent_3p } 0 18 {C23R:C -> C24R:U: adjacent_5p upward } 0 19 {C24R:U -> C23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C4R:G 0 1 C5R:G 0 2 C6R:U 0 3 C7R:C 0 4 C20R:G 0 5 C21R:G 0 6 C22R:C 0 7 C23R:C 0 [Edges] 0 {C4R:G -> C5R:G: adjacent_5p upward } 0 1 {C5R:G -> C4R:G: adjacent_3p downward } 0 2 {C4R:G -> C23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C23R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C5R:G -> C6R:U: adjacent_5p upward } 0 5 {C6R:U -> C5R:G: adjacent_3p downward } 0 6 {C5R:G -> C22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C22R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C6R:U -> C7R:C: adjacent_5p } 0 9 {C7R:C -> C6R:U: adjacent_3p } 0 10 {C6R:U -> C21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {C21R:G -> C6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {C7R:C -> C20R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C20R:G -> C7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C20R:G -> C21R:G: adjacent_5p upward } 0 15 {C21R:G -> C20R:G: adjacent_3p downward } 0 16 {C21R:G -> C22R:C: adjacent_5p upward } 0 17 {C22R:C -> C21R:G: adjacent_3p downward } 0 18 {C22R:C -> C23R:C: adjacent_5p } 0 19 {C23R:C -> C22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C5R:G 0 1 C6R:U 0 2 C7R:C 0 3 C8R:A 0 4 C19R:U 0 5 C20R:G 0 6 C21R:G 0 7 C22R:C 0 [Edges] 0 {C5R:G -> C6R:U: adjacent_5p upward } 0 1 {C6R:U -> C5R:G: adjacent_3p downward } 0 2 {C5R:G -> C22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C22R:C -> C5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C6R:U -> C7R:C: adjacent_5p } 0 5 {C7R:C -> C6R:U: adjacent_3p } 0 6 {C6R:U -> C21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {C21R:G -> C6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {C7R:C -> C8R:A: adjacent_5p upward } 0 9 {C8R:A -> C7R:C: adjacent_3p downward } 0 10 {C7R:C -> C20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C20R:G -> C7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C8R:A -> C19R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {C19R:U -> C8R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {C8R:A -> C20R:G: outward } 0 15 {C20R:G -> C8R:A: outward } 0 16 {C19R:U -> C20R:G: adjacent_5p upward } 0 17 {C20R:G -> C19R:U: adjacent_3p downward } 0 18 {C20R:G -> C21R:G: adjacent_5p upward } 0 19 {C21R:G -> C20R:G: adjacent_3p downward } 0 20 {C21R:G -> C22R:C: adjacent_5p upward } 0 21 {C22R:C -> C21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C6R:U 0 1 C7R:C 0 2 C8R:A 0 3 C9R:U 0 4 C18R:G 0 5 C19R:U 0 6 C20R:G 0 7 C21R:G 0 [Edges] 0 {C6R:U -> C7R:C: adjacent_5p } 0 1 {C7R:C -> C6R:U: adjacent_3p } 0 2 {C6R:U -> C21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {C21R:G -> C6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {C7R:C -> C8R:A: adjacent_5p upward } 0 5 {C8R:A -> C7R:C: adjacent_3p downward } 0 6 {C7R:C -> C20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C20R:G -> C7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C8R:A -> C9R:U: adjacent_5p upward } 0 9 {C9R:U -> C8R:A: adjacent_3p downward } 0 10 {C8R:A -> C19R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C19R:U -> C8R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C8R:A -> C20R:G: outward } 0 13 {C20R:G -> C8R:A: outward } 0 14 {C9R:U -> C18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {C18R:G -> C9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {C18R:G -> C19R:U: adjacent_5p upward } 0 17 {C19R:U -> C18R:G: adjacent_3p downward } 0 18 {C19R:U -> C20R:G: adjacent_5p upward } 0 19 {C20R:G -> C19R:U: adjacent_3p downward } 0 20 {C20R:G -> C21R:G: adjacent_5p upward } 0 21 {C21R:G -> C20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C7R:C 0 1 C8R:A 0 2 C9R:U 0 3 C10R:U 0 4 C17R:A 0 5 C18R:G 0 6 C19R:U 0 7 C20R:G 0 [Edges] 0 {C7R:C -> C8R:A: adjacent_5p upward } 0 1 {C8R:A -> C7R:C: adjacent_3p downward } 0 2 {C7R:C -> C20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C20R:G -> C7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C8R:A -> C9R:U: adjacent_5p upward } 0 5 {C9R:U -> C8R:A: adjacent_3p downward } 0 6 {C8R:A -> C19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C19R:U -> C8R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C8R:A -> C20R:G: outward } 0 9 {C20R:G -> C8R:A: outward } 0 10 {C9R:U -> C10R:U: adjacent_5p } 0 11 {C10R:U -> C9R:U: adjacent_3p } 0 12 {C9R:U -> C18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {C18R:G -> C9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {C10R:U -> C17R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {C17R:A -> C10R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {C17R:A -> C18R:G: adjacent_5p upward } 0 17 {C18R:G -> C17R:A: adjacent_3p downward } 0 18 {C18R:G -> C19R:U: adjacent_5p upward } 0 19 {C19R:U -> C18R:G: adjacent_3p downward } 0 20 {C19R:U -> C20R:G: adjacent_5p upward } 0 21 {C20R:G -> C19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C8R:A 0 1 C9R:U 0 2 C10R:U 0 3 C11R:C 0 4 C16R:G 0 5 C17R:A 0 6 C18R:G 0 7 C19R:U 0 [Edges] 0 {C8R:A -> C9R:U: adjacent_5p upward } 0 1 {C9R:U -> C8R:A: adjacent_3p downward } 0 2 {C8R:A -> C19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {C19R:U -> C8R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C9R:U -> C10R:U: adjacent_5p } 0 5 {C10R:U -> C9R:U: adjacent_3p } 0 6 {C9R:U -> C18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {C18R:G -> C9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {C10R:U -> C11R:C: adjacent_5p } 0 9 {C11R:C -> C10R:U: adjacent_3p } 0 10 {C10R:U -> C17R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {C17R:A -> C10R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {C11R:C -> C16R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C16R:G -> C11R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C16R:G -> C17R:A: adjacent_5p upward } 0 15 {C17R:A -> C16R:G: adjacent_3p downward } 0 16 {C17R:A -> C18R:G: adjacent_5p upward } 0 17 {C18R:G -> C17R:A: adjacent_3p downward } 0 18 {C18R:G -> C19R:U: adjacent_5p upward } 0 19 {C19R:U -> C18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C9R:U 0 1 C10R:U 0 2 C11R:C 0 3 C12R:G 0 4 C15R:A 0 5 C16R:G 0 6 C17R:A 0 7 C18R:G 0 [Edges] 0 {C9R:U -> C10R:U: adjacent_5p } 0 1 {C10R:U -> C9R:U: adjacent_3p } 0 2 {C9R:U -> C18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {C18R:G -> C9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {C10R:U -> C11R:C: adjacent_5p } 0 5 {C11R:C -> C10R:U: adjacent_3p } 0 6 {C10R:U -> C17R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C17R:A -> C10R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C11R:C -> C12R:G: adjacent_5p upward } 0 9 {C12R:G -> C11R:C: adjacent_3p downward } 0 10 {C11R:C -> C16R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C16R:G -> C11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C12R:G -> C15R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 13 {C15R:A -> C12R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 14 {C15R:A -> C16R:G: adjacent_5p upward } 0 15 {C16R:G -> C15R:A: adjacent_3p downward } 0 16 {C16R:G -> C17R:A: adjacent_5p upward } 0 17 {C17R:A -> C16R:G: adjacent_3p downward } 0 18 {C17R:A -> C18R:G: adjacent_5p upward } 0 19 {C18R:G -> C17R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D1R:A 0 1 D2R:A 0 2 D3R:A 0 3 D4R:G 0 4 D23R:C 0 5 D24R:U 0 6 D25R:U 0 7 D26R:U 0 [Edges] 0 {D1R:A -> D2R:A: adjacent_5p upward } 0 1 {D2R:A -> D1R:A: adjacent_3p downward } 0 2 {D1R:A -> D26R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D26R:U -> D1R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {D2R:A -> D3R:A: adjacent_5p upward } 0 5 {D3R:A -> D2R:A: adjacent_3p downward } 0 6 {D2R:A -> D25R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D25R:U -> D2R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D3R:A -> D4R:G: adjacent_5p upward } 0 9 {D4R:G -> D3R:A: adjacent_3p downward } 0 10 {D3R:A -> D24R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D24R:U -> D3R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {D4R:G -> D23R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D23R:C -> D4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D23R:C -> D24R:U: adjacent_5p upward } 0 15 {D24R:U -> D23R:C: adjacent_3p downward } 0 16 {D24R:U -> D25R:U: adjacent_5p } 0 17 {D25R:U -> D24R:U: adjacent_3p } 0 18 {D25R:U -> D26R:U: adjacent_5p upward } 0 19 {D26R:U -> D25R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D2R:A 0 1 D3R:A 0 2 D4R:G 0 3 D5R:G 0 4 D22R:C 0 5 D23R:C 0 6 D24R:U 0 7 D25R:U 0 [Edges] 0 {D2R:A -> D3R:A: adjacent_5p upward } 0 1 {D3R:A -> D2R:A: adjacent_3p downward } 0 2 {D2R:A -> D25R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D25R:U -> D2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {D3R:A -> D4R:G: adjacent_5p upward } 0 5 {D4R:G -> D3R:A: adjacent_3p downward } 0 6 {D3R:A -> D24R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D24R:U -> D3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D4R:G -> D5R:G: adjacent_5p upward } 0 9 {D5R:G -> D4R:G: adjacent_3p downward } 0 10 {D4R:G -> D23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D23R:C -> D4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D5R:G -> D22R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D22R:C -> D5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D22R:C -> D23R:C: adjacent_5p } 0 15 {D23R:C -> D22R:C: adjacent_3p } 0 16 {D23R:C -> D24R:U: adjacent_5p upward } 0 17 {D24R:U -> D23R:C: adjacent_3p downward } 0 18 {D24R:U -> D25R:U: adjacent_5p } 0 19 {D25R:U -> D24R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D3R:A 0 1 D4R:G 0 2 D5R:G 0 3 D6R:U 0 4 D21R:G 0 5 D22R:C 0 6 D23R:C 0 7 D24R:U 0 [Edges] 0 {D3R:A -> D4R:G: adjacent_5p upward } 0 1 {D4R:G -> D3R:A: adjacent_3p downward } 0 2 {D3R:A -> D24R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D24R:U -> D3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {D4R:G -> D5R:G: adjacent_5p upward } 0 5 {D5R:G -> D4R:G: adjacent_3p downward } 0 6 {D4R:G -> D23R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D23R:C -> D4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D5R:G -> D6R:U: adjacent_5p upward } 0 9 {D6R:U -> D5R:G: adjacent_3p downward } 0 10 {D5R:G -> D22R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D22R:C -> D5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D6R:U -> D21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {D21R:G -> D6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {D21R:G -> D22R:C: adjacent_5p upward } 0 15 {D22R:C -> D21R:G: adjacent_3p downward } 0 16 {D22R:C -> D23R:C: adjacent_5p } 0 17 {D23R:C -> D22R:C: adjacent_3p } 0 18 {D23R:C -> D24R:U: adjacent_5p upward } 0 19 {D24R:U -> D23R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D4R:G 0 1 D5R:G 0 2 D6R:U 0 3 D7R:C 0 4 D20R:G 0 5 D21R:G 0 6 D22R:C 0 7 D23R:C 0 [Edges] 0 {D4R:G -> D5R:G: adjacent_5p upward } 0 1 {D5R:G -> D4R:G: adjacent_3p downward } 0 2 {D4R:G -> D23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D23R:C -> D4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D5R:G -> D6R:U: adjacent_5p upward } 0 5 {D6R:U -> D5R:G: adjacent_3p downward } 0 6 {D5R:G -> D22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D22R:C -> D5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D6R:U -> D7R:C: adjacent_5p } 0 9 {D7R:C -> D6R:U: adjacent_3p } 0 10 {D6R:U -> D21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {D21R:G -> D6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {D7R:C -> D20R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D20R:G -> D7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D20R:G -> D21R:G: adjacent_5p upward } 0 15 {D21R:G -> D20R:G: adjacent_3p downward } 0 16 {D21R:G -> D22R:C: adjacent_5p upward } 0 17 {D22R:C -> D21R:G: adjacent_3p downward } 0 18 {D22R:C -> D23R:C: adjacent_5p } 0 19 {D23R:C -> D22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D5R:G 0 1 D6R:U 0 2 D7R:C 0 3 D8R:A 0 4 D19R:U 0 5 D20R:G 0 6 D21R:G 0 7 D22R:C 0 [Edges] 0 {D5R:G -> D6R:U: adjacent_5p upward } 0 1 {D6R:U -> D5R:G: adjacent_3p downward } 0 2 {D5R:G -> D22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D22R:C -> D5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D6R:U -> D7R:C: adjacent_5p } 0 5 {D7R:C -> D6R:U: adjacent_3p } 0 6 {D6R:U -> D21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {D21R:G -> D6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {D7R:C -> D8R:A: adjacent_5p upward } 0 9 {D8R:A -> D7R:C: adjacent_3p downward } 0 10 {D7R:C -> D20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D20R:G -> D7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D8R:A -> D19R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {D19R:U -> D8R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {D8R:A -> D20R:G: outward } 0 15 {D20R:G -> D8R:A: outward } 0 16 {D19R:U -> D20R:G: adjacent_5p upward } 0 17 {D20R:G -> D19R:U: adjacent_3p downward } 0 18 {D20R:G -> D21R:G: adjacent_5p upward } 0 19 {D21R:G -> D20R:G: adjacent_3p downward } 0 20 {D21R:G -> D22R:C: adjacent_5p upward } 0 21 {D22R:C -> D21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D6R:U 0 1 D7R:C 0 2 D8R:A 0 3 D9R:U 0 4 D18R:G 0 5 D19R:U 0 6 D20R:G 0 7 D21R:G 0 [Edges] 0 {D6R:U -> D7R:C: adjacent_5p } 0 1 {D7R:C -> D6R:U: adjacent_3p } 0 2 {D6R:U -> D21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {D21R:G -> D6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {D7R:C -> D8R:A: adjacent_5p upward } 0 5 {D8R:A -> D7R:C: adjacent_3p downward } 0 6 {D7R:C -> D20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D20R:G -> D7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D8R:A -> D9R:U: adjacent_5p upward } 0 9 {D9R:U -> D8R:A: adjacent_3p downward } 0 10 {D8R:A -> D19R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D19R:U -> D8R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {D8R:A -> D20R:G: outward } 0 13 {D20R:G -> D8R:A: outward } 0 14 {D9R:U -> D18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {D18R:G -> D9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {D18R:G -> D19R:U: adjacent_5p upward } 0 17 {D19R:U -> D18R:G: adjacent_3p downward } 0 18 {D19R:U -> D20R:G: adjacent_5p upward } 0 19 {D20R:G -> D19R:U: adjacent_3p downward } 0 20 {D20R:G -> D21R:G: adjacent_5p upward } 0 21 {D21R:G -> D20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D7R:C 0 1 D8R:A 0 2 D9R:U 0 3 D10R:U 0 4 D17R:A 0 5 D18R:G 0 6 D19R:U 0 7 D20R:G 0 [Edges] 0 {D7R:C -> D8R:A: adjacent_5p upward } 0 1 {D8R:A -> D7R:C: adjacent_3p downward } 0 2 {D7R:C -> D20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D20R:G -> D7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D8R:A -> D9R:U: adjacent_5p upward } 0 5 {D9R:U -> D8R:A: adjacent_3p downward } 0 6 {D8R:A -> D19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D19R:U -> D8R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D8R:A -> D20R:G: outward } 0 9 {D20R:G -> D8R:A: outward } 0 10 {D9R:U -> D10R:U: adjacent_5p } 0 11 {D10R:U -> D9R:U: adjacent_3p } 0 12 {D9R:U -> D18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {D18R:G -> D9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {D10R:U -> D17R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {D17R:A -> D10R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {D17R:A -> D18R:G: adjacent_5p upward } 0 17 {D18R:G -> D17R:A: adjacent_3p downward } 0 18 {D18R:G -> D19R:U: adjacent_5p upward } 0 19 {D19R:U -> D18R:G: adjacent_3p downward } 0 20 {D19R:U -> D20R:G: adjacent_5p upward } 0 21 {D20R:G -> D19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D8R:A 0 1 D9R:U 0 2 D10R:U 0 3 D11R:C 0 4 D16R:G 0 5 D17R:A 0 6 D18R:G 0 7 D19R:U 0 [Edges] 0 {D8R:A -> D9R:U: adjacent_5p upward } 0 1 {D9R:U -> D8R:A: adjacent_3p downward } 0 2 {D8R:A -> D19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D19R:U -> D8R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {D9R:U -> D10R:U: adjacent_5p } 0 5 {D10R:U -> D9R:U: adjacent_3p } 0 6 {D9R:U -> D18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {D18R:G -> D9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {D10R:U -> D11R:C: adjacent_5p upward } 0 9 {D11R:C -> D10R:U: adjacent_3p downward } 0 10 {D10R:U -> D17R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {D17R:A -> D10R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {D11R:C -> D16R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D16R:G -> D11R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D16R:G -> D17R:A: adjacent_5p upward } 0 15 {D17R:A -> D16R:G: adjacent_3p downward } 0 16 {D17R:A -> D18R:G: adjacent_5p upward } 0 17 {D18R:G -> D17R:A: adjacent_3p downward } 0 18 {D18R:G -> D19R:U: adjacent_5p upward } 0 19 {D19R:U -> D18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D9R:U 0 1 D10R:U 0 2 D11R:C 0 3 D12R:G 0 4 D15R:A 0 5 D16R:G 0 6 D17R:A 0 7 D18R:G 0 [Edges] 0 {D9R:U -> D10R:U: adjacent_5p } 0 1 {D10R:U -> D9R:U: adjacent_3p } 0 2 {D9R:U -> D18R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {D18R:G -> D9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {D10R:U -> D11R:C: adjacent_5p upward } 0 5 {D11R:C -> D10R:U: adjacent_3p downward } 0 6 {D10R:U -> D17R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D17R:A -> D10R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D11R:C -> D12R:G: adjacent_5p upward } 0 9 {D12R:G -> D11R:C: adjacent_3p downward } 0 10 {D11R:C -> D16R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D16R:G -> D11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D12R:G -> D15R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 13 {D15R:A -> D12R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 14 {D15R:A -> D16R:G: adjacent_5p upward } 0 15 {D16R:G -> D15R:A: adjacent_3p downward } 0 16 {D16R:G -> D17R:A: adjacent_5p upward } 0 17 {D17R:A -> D16R:G: adjacent_3p downward } 0 18 {D17R:A -> D18R:G: adjacent_5p upward } 0 19 {D18R:G -> D17R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:U 0 3 A5R:G 0 4 A21R:C 0 5 A22R:A 0 6 A23R:A 0 7 A24R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A23R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A23R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:U -> A5R:G: adjacent_5p } 0 9 {A5R:G -> A4R:U: adjacent_3p } 0 10 {A4R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A22R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A21R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A5R:G -> A22R:A: outward } 0 15 {A22R:A -> A5R:G: outward } 0 16 {A21R:C -> A22R:A: adjacent_5p upward } 0 17 {A22R:A -> A21R:C: adjacent_3p downward } 0 18 {A22R:A -> A23R:A: adjacent_5p upward } 0 19 {A23R:A -> A22R:A: adjacent_3p downward } 0 20 {A23R:A -> A24R:C: adjacent_5p upward } 0 21 {A24R:C -> A23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:U 0 2 A5R:G 0 3 A6R:C 0 4 A20R:G 0 5 A21R:C 0 6 A22R:A 0 7 A23R:A 0 [Edges] 0 {A3R:U -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> A23R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A23R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:U -> A5R:G: adjacent_5p } 0 5 {A5R:G -> A4R:U: adjacent_3p } 0 6 {A4R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A22R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:G -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A21R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> A22R:A: outward } 0 13 {A22R:A -> A5R:G: outward } 0 14 {A6R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A20R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A20R:G -> A21R:C: adjacent_5p upward } 0 17 {A21R:C -> A20R:G: adjacent_3p downward } 0 18 {A21R:C -> A22R:A: adjacent_5p upward } 0 19 {A22R:A -> A21R:C: adjacent_3p downward } 0 20 {A22R:A -> A23R:A: adjacent_5p upward } 0 21 {A23R:A -> A22R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:G 0 2 A6R:C 0 3 A7R:U 0 4 A19R:G 0 5 A20R:G 0 6 A21R:C 0 7 A22R:A 0 [Edges] 0 {A4R:U -> A5R:G: adjacent_5p } 0 1 {A5R:G -> A4R:U: adjacent_3p } 0 2 {A4R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A22R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:G -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A22R:A: outward } 0 9 {A22R:A -> A5R:G: outward } 0 10 {A6R:C -> A7R:U: adjacent_5p upward } 0 11 {A7R:U -> A6R:C: adjacent_3p downward } 0 12 {A6R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A20R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:U -> A19R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {A19R:G -> A7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {A19R:G -> A20R:G: adjacent_5p upward } 0 17 {A20R:G -> A19R:G: adjacent_3p downward } 0 18 {A20R:G -> A21R:C: adjacent_5p upward } 0 19 {A21R:C -> A20R:G: adjacent_3p downward } 0 20 {A21R:C -> A22R:A: adjacent_5p upward } 0 21 {A22R:A -> A21R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:C 0 2 A7R:U 0 3 A8R:G 0 4 A18R:C 0 5 A19R:G 0 6 A20R:G 0 7 A21R:C 0 [Edges] 0 {A5R:G -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:C -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:C: adjacent_3p downward } 0 6 {A6R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A20R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:U -> A8R:G: adjacent_5p } 0 9 {A8R:G -> A7R:U: adjacent_3p } 0 10 {A7R:U -> A19R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {A19R:G -> A7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A8R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A18R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A8R:G -> A19R:G: outward } 0 15 {A19R:G -> A8R:G: outward } 0 16 {A18R:C -> A19R:G: adjacent_5p upward } 0 17 {A19R:G -> A18R:C: adjacent_3p downward } 0 18 {A19R:G -> A20R:G: adjacent_5p upward } 0 19 {A20R:G -> A19R:G: adjacent_3p downward } 0 20 {A20R:G -> A21R:C: adjacent_5p upward } 0 21 {A21R:C -> A20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A11R:G 0 1 A12R:C 0 2 A13R:G 0 3 A14R:C 0 4 B37R:G 0 5 B38R:C 0 6 B39R:G 0 7 B40R:C 0 [Edges] 0 {A11R:G -> A12R:C: adjacent_5p upward } 0 1 {A12R:C -> A11R:G: adjacent_3p downward } 0 2 {A11R:G -> B40R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B40R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:C -> A13R:G: adjacent_5p } 0 5 {A13R:G -> A12R:C: adjacent_3p } 0 6 {A12R:C -> B39R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B39R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:G -> A14R:C: adjacent_5p upward } 0 9 {A14R:C -> A13R:G: adjacent_3p downward } 0 10 {A13R:G -> B38R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B38R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:C -> B37R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B37R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B37R:G -> B38R:C: adjacent_5p upward } 0 15 {B38R:C -> B37R:G: adjacent_3p downward } 0 16 {B38R:C -> B39R:G: adjacent_5p upward } 0 17 {B39R:G -> B38R:C: adjacent_3p downward } 0 18 {B39R:G -> B40R:C: adjacent_5p upward } 0 19 {B40R:C -> B39R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A12R:C 0 1 A13R:G 0 2 A14R:C 0 3 A15R:G 0 4 B36R:C 0 5 B37R:G 0 6 B38R:C 0 7 B39R:G 0 [Edges] 0 {A12R:C -> A13R:G: adjacent_5p } 0 1 {A13R:G -> A12R:C: adjacent_3p } 0 2 {A12R:C -> B39R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B39R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:G -> A14R:C: adjacent_5p upward } 0 5 {A14R:C -> A13R:G: adjacent_3p downward } 0 6 {A13R:G -> B38R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B38R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:C -> A15R:G: adjacent_5p upward } 0 9 {A15R:G -> A14R:C: adjacent_3p downward } 0 10 {A14R:C -> B37R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B37R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A15R:G -> B36R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B36R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B36R:C -> B37R:G: adjacent_5p } 0 15 {B37R:G -> B36R:C: adjacent_3p } 0 16 {B37R:G -> B38R:C: adjacent_5p upward } 0 17 {B38R:C -> B37R:G: adjacent_3p downward } 0 18 {B38R:C -> B39R:G: adjacent_5p upward } 0 19 {B39R:G -> B38R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A13R:G 0 1 A14R:C 0 2 A15R:G 0 3 A16R:C 0 4 B35R:G 0 5 B36R:C 0 6 B37R:G 0 7 B38R:C 0 [Edges] 0 {A13R:G -> A14R:C: adjacent_5p upward } 0 1 {A14R:C -> A13R:G: adjacent_3p downward } 0 2 {A13R:G -> B38R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B38R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A14R:C -> A15R:G: adjacent_5p upward } 0 5 {A15R:G -> A14R:C: adjacent_3p downward } 0 6 {A14R:C -> B37R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B37R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A15R:G -> A16R:C: adjacent_5p upward } 0 9 {A16R:C -> A15R:G: adjacent_3p downward } 0 10 {A15R:G -> B36R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B36R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A16R:C -> B35R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B35R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B35R:G -> B36R:C: adjacent_5p upward } 0 15 {B36R:C -> B35R:G: adjacent_3p downward } 0 16 {B36R:C -> B37R:G: adjacent_5p } 0 17 {B37R:G -> B36R:C: adjacent_3p } 0 18 {B37R:G -> B38R:C: adjacent_5p upward } 0 19 {B38R:C -> B37R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B26R:G 0 1 B27R:U 0 2 B28R:U 0 3 B29R:G 0 4 B45R:C 0 5 B46R:A 0 6 B47R:A 0 7 B48R:C 0 [Edges] 0 {B26R:G -> B27R:U: adjacent_5p upward } 0 1 {B27R:U -> B26R:G: adjacent_3p downward } 0 2 {B26R:G -> B48R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B48R:C -> B26R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B27R:U -> B28R:U: adjacent_5p upward } 0 5 {B28R:U -> B27R:U: adjacent_3p downward } 0 6 {B27R:U -> B47R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B47R:A -> B27R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B28R:U -> B29R:G: adjacent_5p } 0 9 {B29R:G -> B28R:U: adjacent_3p } 0 10 {B28R:U -> B46R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B46R:A -> B28R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B29R:G -> B45R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B45R:C -> B29R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B29R:G -> B46R:A: outward } 0 15 {B46R:A -> B29R:G: outward } 0 16 {B45R:C -> B46R:A: adjacent_5p upward } 0 17 {B46R:A -> B45R:C: adjacent_3p downward } 0 18 {B46R:A -> B47R:A: adjacent_5p upward } 0 19 {B47R:A -> B46R:A: adjacent_3p downward } 0 20 {B47R:A -> B48R:C: adjacent_5p upward } 0 21 {B48R:C -> B47R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B27R:U 0 1 B28R:U 0 2 B29R:G 0 3 B30R:C 0 4 B44R:G 0 5 B45R:C 0 6 B46R:A 0 7 B47R:A 0 [Edges] 0 {B27R:U -> B28R:U: adjacent_5p upward } 0 1 {B28R:U -> B27R:U: adjacent_3p downward } 0 2 {B27R:U -> B47R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B47R:A -> B27R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B28R:U -> B29R:G: adjacent_5p } 0 5 {B29R:G -> B28R:U: adjacent_3p } 0 6 {B28R:U -> B46R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B46R:A -> B28R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B29R:G -> B30R:C: adjacent_5p upward } 0 9 {B30R:C -> B29R:G: adjacent_3p downward } 0 10 {B29R:G -> B45R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B45R:C -> B29R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B29R:G -> B46R:A: outward } 0 13 {B46R:A -> B29R:G: outward } 0 14 {B30R:C -> B44R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B44R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B44R:G -> B45R:C: adjacent_5p upward } 0 17 {B45R:C -> B44R:G: adjacent_3p downward } 0 18 {B45R:C -> B46R:A: adjacent_5p upward } 0 19 {B46R:A -> B45R:C: adjacent_3p downward } 0 20 {B46R:A -> B47R:A: adjacent_5p upward } 0 21 {B47R:A -> B46R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B28R:U 0 1 B29R:G 0 2 B30R:C 0 3 B31R:U 0 4 B43R:G 0 5 B44R:G 0 6 B45R:C 0 7 B46R:A 0 [Edges] 0 {B28R:U -> B29R:G: adjacent_5p } 0 1 {B29R:G -> B28R:U: adjacent_3p } 0 2 {B28R:U -> B46R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B46R:A -> B28R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B29R:G -> B30R:C: adjacent_5p upward } 0 5 {B30R:C -> B29R:G: adjacent_3p downward } 0 6 {B29R:G -> B45R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B45R:C -> B29R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B29R:G -> B46R:A: outward } 0 9 {B46R:A -> B29R:G: outward } 0 10 {B30R:C -> B31R:U: adjacent_5p upward } 0 11 {B31R:U -> B30R:C: adjacent_3p downward } 0 12 {B30R:C -> B44R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B44R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B31R:U -> B43R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {B43R:G -> B31R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {B43R:G -> B44R:G: adjacent_5p upward } 0 17 {B44R:G -> B43R:G: adjacent_3p downward } 0 18 {B44R:G -> B45R:C: adjacent_5p upward } 0 19 {B45R:C -> B44R:G: adjacent_3p downward } 0 20 {B45R:C -> B46R:A: adjacent_5p upward } 0 21 {B46R:A -> B45R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B29R:G 0 1 B30R:C 0 2 B31R:U 0 3 B32R:G 0 4 B42R:C 0 5 B43R:G 0 6 B44R:G 0 7 B45R:C 0 [Edges] 0 {B29R:G -> B30R:C: adjacent_5p upward } 0 1 {B30R:C -> B29R:G: adjacent_3p downward } 0 2 {B29R:G -> B45R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B45R:C -> B29R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B30R:C -> B31R:U: adjacent_5p upward } 0 5 {B31R:U -> B30R:C: adjacent_3p downward } 0 6 {B30R:C -> B44R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B44R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B31R:U -> B32R:G: adjacent_5p } 0 9 {B32R:G -> B31R:U: adjacent_3p } 0 10 {B31R:U -> B43R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B43R:G -> B31R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {B32R:G -> B42R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B42R:C -> B32R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B32R:G -> B43R:G: outward } 0 15 {B43R:G -> B32R:G: outward } 0 16 {B42R:C -> B43R:G: adjacent_5p upward } 0 17 {B43R:G -> B42R:C: adjacent_3p downward } 0 18 {B43R:G -> B44R:G: adjacent_5p upward } 0 19 {B44R:G -> B43R:G: adjacent_3p downward } 0 20 {B44R:G -> B45R:C: adjacent_5p upward } 0 21 {B45R:C -> B44R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:A 0 1 A3R:G 0 2 A4R:C 0 3 A5R:C 0 4 A30R:G 0 5 A31R:G 0 6 A32R:U 0 7 A33R:U 0 [Edges] 0 {A2R:A -> A3R:G: adjacent_5p } 0 1 {A3R:G -> A2R:A: adjacent_3p } 0 2 {A2R:A -> A33R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A33R:U -> A2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A32R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A32R:U -> A3R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A4R:C -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A31R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A30R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A30R:G -> A31R:G: adjacent_5p upward } 0 15 {A31R:G -> A30R:G: adjacent_3p downward } 0 16 {A31R:G -> A32R:U: adjacent_5p upward } 0 17 {A32R:U -> A31R:G: adjacent_3p downward } 0 18 {A32R:U -> A33R:U: adjacent_5p } 0 19 {A33R:U -> A32R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:C 0 2 A5R:C 0 3 A6R:G 0 4 A29R:C 0 5 A30R:G 0 6 A31R:G 0 7 A32R:U 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A32R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A32R:U -> A3R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A4R:C -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A31R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:C -> A6R:G: adjacent_5p } 0 9 {A6R:G -> A5R:C: adjacent_3p } 0 10 {A5R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A30R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A29R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A6R:G -> A30R:G: outward } 0 15 {A30R:G -> A6R:G: outward } 0 16 {A29R:C -> A30R:G: adjacent_5p upward } 0 17 {A30R:G -> A29R:C: adjacent_3p downward } 0 18 {A30R:G -> A31R:G: adjacent_5p upward } 0 19 {A31R:G -> A30R:G: adjacent_3p downward } 0 20 {A31R:G -> A32R:U: adjacent_5p upward } 0 21 {A32R:U -> A31R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:C 0 2 A6R:G 0 3 A7R:U 0 4 A28R:A 0 5 A29R:C 0 6 A30R:G 0 7 A31R:G 0 [Edges] 0 {A4R:C -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> A31R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A31R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:G: adjacent_5p } 0 5 {A6R:G -> A5R:C: adjacent_3p } 0 6 {A5R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A30R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> A7R:U: adjacent_5p upward } 0 9 {A7R:U -> A6R:G: adjacent_3p downward } 0 10 {A6R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A29R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:G -> A30R:G: outward } 0 13 {A30R:G -> A6R:G: outward } 0 14 {A7R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A28R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A28R:A -> A29R:C: adjacent_5p upward } 0 17 {A29R:C -> A28R:A: adjacent_3p downward } 0 18 {A29R:C -> A30R:G: adjacent_5p upward } 0 19 {A30R:G -> A29R:C: adjacent_3p downward } 0 20 {A30R:G -> A31R:G: adjacent_5p upward } 0 21 {A31R:G -> A30R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:G 0 2 A7R:U 0 3 A8R:G 0 4 A27R:C 0 5 A28R:A 0 6 A29R:C 0 7 A30R:G 0 [Edges] 0 {A5R:C -> A6R:G: adjacent_5p } 0 1 {A6R:G -> A5R:C: adjacent_3p } 0 2 {A5R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A30R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:G -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A29R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> A30R:G: outward } 0 9 {A30R:G -> A6R:G: outward } 0 10 {A7R:U -> A8R:G: adjacent_5p upward } 0 11 {A8R:G -> A7R:U: adjacent_3p downward } 0 12 {A7R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A28R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A8R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A27R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A8R:G -> A28R:A: outward } 0 17 {A28R:A -> A8R:G: outward } 0 18 {A27R:C -> A28R:A: adjacent_5p } 0 19 {A28R:A -> A27R:C: adjacent_3p } 0 20 {A28R:A -> A29R:C: adjacent_5p upward } 0 21 {A29R:C -> A28R:A: adjacent_3p downward } 0 22 {A29R:C -> A30R:G: adjacent_5p upward } 0 23 {A30R:G -> A29R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:C 0 2 A12R:G 0 3 A13R:A 0 4 A20R:U 0 5 A21R:C 0 6 A22R:G 0 7 A23R:C 0 [Edges] 0 {A10R:G -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:C -> A12R:G: adjacent_5p } 0 5 {A12R:G -> A11R:C: adjacent_3p } 0 6 {A11R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:G -> A13R:A: adjacent_5p upward } 0 9 {A13R:A -> A12R:G: adjacent_3p downward } 0 10 {A12R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A21R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A20R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A20R:U -> A21R:C: adjacent_5p } 0 15 {A21R:C -> A20R:U: adjacent_3p } 0 16 {A21R:C -> A22R:G: adjacent_5p } 0 17 {A22R:G -> A21R:C: adjacent_3p } 0 18 {A22R:G -> A23R:C: adjacent_5p upward } 0 19 {A23R:C -> A22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:G 0 2 A13R:A 0 3 A14R:U 0 4 A19R:G 0 5 A20R:U 0 6 A21R:C 0 7 A22R:G 0 [Edges] 0 {A11R:C -> A12R:G: adjacent_5p } 0 1 {A12R:G -> A11R:C: adjacent_3p } 0 2 {A11R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:G -> A13R:A: adjacent_5p upward } 0 5 {A13R:A -> A12R:G: adjacent_3p downward } 0 6 {A12R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:A -> A14R:U: adjacent_5p upward } 0 9 {A14R:U -> A13R:A: adjacent_3p downward } 0 10 {A13R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A20R:U -> A13R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A14R:U -> A19R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {A19R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A19R:G -> A20R:U: adjacent_5p upward } 0 15 {A20R:U -> A19R:G: adjacent_3p downward } 0 16 {A20R:U -> A21R:C: adjacent_5p } 0 17 {A21R:C -> A20R:U: adjacent_3p } 0 18 {A21R:C -> A22R:G: adjacent_5p } 0 19 {A22R:G -> A21R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 B1R:A 0 1 B2R:A 0 2 B3R:U 0 3 B4R:C 0 4 B12R:G 0 5 B13R:A 0 6 B14R:U 0 7 B15R:U 0 [Edges] 0 {B1R:A -> B2R:A: adjacent_5p upward } 0 1 {B2R:A -> B1R:A: adjacent_3p downward } 0 2 {B1R:A -> B15R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B15R:U -> B1R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B2R:A -> B3R:U: adjacent_5p upward } 0 5 {B3R:U -> B2R:A: adjacent_3p downward } 0 6 {B2R:A -> B14R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B14R:U -> B2R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B3R:U -> B4R:C: adjacent_5p upward } 0 9 {B4R:C -> B3R:U: adjacent_3p downward } 0 10 {B3R:U -> B13R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B13R:A -> B3R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {B4R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B12R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B12R:G -> B13R:A: adjacent_5p upward } 0 15 {B13R:A -> B12R:G: adjacent_3p downward } 0 16 {B13R:A -> B14R:U: adjacent_5p upward } 0 17 {B14R:U -> B13R:A: adjacent_3p downward } 0 18 {B14R:U -> B15R:U: adjacent_5p upward } 0 19 {B15R:U -> B14R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B2R:A 0 1 B3R:U 0 2 B4R:C 0 3 B5R:U 0 4 B11R:A 0 5 B12R:G 0 6 B13R:A 0 7 B14R:U 0 [Edges] 0 {B2R:A -> B3R:U: adjacent_5p upward } 0 1 {B3R:U -> B2R:A: adjacent_3p downward } 0 2 {B2R:A -> B14R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B14R:U -> B2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B3R:U -> B4R:C: adjacent_5p upward } 0 5 {B4R:C -> B3R:U: adjacent_3p downward } 0 6 {B3R:U -> B13R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B13R:A -> B3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B4R:C -> B5R:U: adjacent_5p upward } 0 9 {B5R:U -> B4R:C: adjacent_3p downward } 0 10 {B4R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B12R:G -> B4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B5R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B11R:A -> B5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B11R:A -> B12R:G: adjacent_5p upward } 0 15 {B12R:G -> B11R:A: adjacent_3p downward } 0 16 {B12R:G -> B13R:A: adjacent_5p upward } 0 17 {B13R:A -> B12R:G: adjacent_3p downward } 0 18 {B13R:A -> B14R:U: adjacent_5p upward } 0 19 {B14R:U -> B13R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 R2R:C 0 1 R3R:U 0 2 R4R:U 0 3 R5R:C 0 4 R68R:G 0 5 R69R:A 0 6 R70R:A 0 7 R71R:G 0 [Edges] 0 {R2R:C -> R3R:U: adjacent_5p upward } 0 1 {R3R:U -> R2R:C: adjacent_3p downward } 0 2 {R2R:C -> R71R:G: pairing antiparallel cis Ww/Ww } 0 3 {R71R:G -> R2R:C: pairing antiparallel cis Ww/Ww } 0 4 {R3R:U -> R4R:U: adjacent_5p upward } 0 5 {R4R:U -> R3R:U: adjacent_3p downward } 0 6 {R3R:U -> R70R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {R70R:A -> R3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {R4R:U -> R5R:C: adjacent_5p upward } 0 9 {R5R:C -> R4R:U: adjacent_3p downward } 0 10 {R4R:U -> R69R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {R69R:A -> R4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {R5R:C -> R68R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {R68R:G -> R5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {R68R:G -> R69R:A: adjacent_5p upward } 0 15 {R69R:A -> R68R:G: adjacent_3p downward } 0 16 {R69R:A -> R70R:A: adjacent_5p upward } 0 17 {R70R:A -> R69R:A: adjacent_3p downward } 0 18 {R70R:A -> R71R:G: adjacent_5p upward } 0 19 {R71R:G -> R70R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 R3R:U 0 1 R4R:U 0 2 R5R:C 0 3 R6R:C 0 4 R67R:G 0 5 R68R:G 0 6 R69R:A 0 7 R70R:A 0 [Edges] 0 {R3R:U -> R4R:U: adjacent_5p upward } 0 1 {R4R:U -> R3R:U: adjacent_3p downward } 0 2 {R3R:U -> R70R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {R70R:A -> R3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {R4R:U -> R5R:C: adjacent_5p upward } 0 5 {R5R:C -> R4R:U: adjacent_3p downward } 0 6 {R4R:U -> R69R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {R69R:A -> R4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {R5R:C -> R6R:C: adjacent_5p } 0 9 {R6R:C -> R5R:C: adjacent_3p } 0 10 {R5R:C -> R68R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {R68R:G -> R5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {R6R:C -> R67R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {R67R:G -> R6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {R67R:G -> R68R:G: adjacent_5p upward } 0 15 {R68R:G -> R67R:G: adjacent_3p downward } 0 16 {R68R:G -> R69R:A: adjacent_5p upward } 0 17 {R69R:A -> R68R:G: adjacent_3p downward } 0 18 {R69R:A -> R70R:A: adjacent_5p upward } 0 19 {R70R:A -> R69R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 R4R:U 0 1 R5R:C 0 2 R6R:C 0 3 R7R:A 0 4 R66R:U 0 5 R67R:G 0 6 R68R:G 0 7 R69R:A 0 [Edges] 0 {R4R:U -> R5R:C: adjacent_5p upward } 0 1 {R5R:C -> R4R:U: adjacent_3p downward } 0 2 {R4R:U -> R69R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {R69R:A -> R4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {R5R:C -> R6R:C: adjacent_5p } 0 5 {R6R:C -> R5R:C: adjacent_3p } 0 6 {R5R:C -> R68R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R68R:G -> R5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R6R:C -> R7R:A: adjacent_5p } 0 9 {R7R:A -> R6R:C: adjacent_3p } 0 10 {R6R:C -> R67R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {R67R:G -> R6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {R7R:A -> R66R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {R66R:U -> R7R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {R7R:A -> R67R:G: outward } 0 15 {R67R:G -> R7R:A: outward } 0 16 {R66R:U -> R67R:G: adjacent_5p } 0 17 {R67R:G -> R66R:U: adjacent_3p } 0 18 {R67R:G -> R68R:G: adjacent_5p upward } 0 19 {R68R:G -> R67R:G: adjacent_3p downward } 0 20 {R68R:G -> R69R:A: adjacent_5p upward } 0 21 {R69R:A -> R68R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 R10R:G 0 1 R11R:C 0 2 R12R:U 0 3 R13R:C 0 4 R22R:G 0 5 R23R:A 0 6 R24R:G 0 7 R25R:C 0 [Edges] 0 {R10R:G -> R11R:C: adjacent_5p upward } 0 1 {R11R:C -> R10R:G: adjacent_3p downward } 0 2 {R10R:G -> R24R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 3 {R24R:G -> R10R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 4 {R10R:G -> R25R:C: pairing antiparallel cis Ww/Ww } 0 5 {R25R:C -> R10R:G: pairing antiparallel cis Ww/Ww } 0 6 {R11R:C -> R12R:U: adjacent_5p upward } 0 7 {R12R:U -> R11R:C: adjacent_3p downward } 0 8 {R11R:C -> R24R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 9 {R24R:G -> R11R:C: pairing antiparallel cis one_hbond Ws/Ws } 0 10 {R12R:U -> R13R:C: adjacent_5p upward } 0 11 {R13R:C -> R12R:U: adjacent_3p downward } 0 12 {R12R:U -> R23R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {R23R:A -> R12R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {R13R:C -> R22R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {R22R:G -> R13R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {R22R:G -> R23R:A: adjacent_5p upward } 0 17 {R23R:A -> R22R:G: adjacent_3p downward } 0 18 {R23R:A -> R24R:G: adjacent_5p upward } 0 19 {R24R:G -> R23R:A: adjacent_3p downward } 0 20 {R24R:G -> R25R:C: adjacent_5p upward } 0 21 {R25R:C -> R24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . 2 4 1 1 . 6 . . . 8 . 2 . 7 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 3 9 . . . 19 . 20 7 5 . . . . . 21 . [GraphModel] [Vertices] 0 R49R:A 0 1 R50R:G 0 2 R51R:C 0 3 R52R:G 0 4 R62R:C 0 5 R63R:G 0 6 R64R:C 0 7 R65R:U 0 [Edges] 0 {R49R:A -> R50R:G: adjacent_5p upward } 0 1 {R50R:G -> R49R:A: adjacent_3p downward } 0 2 {R49R:A -> R65R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {R65R:U -> R49R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {R50R:G -> R51R:C: adjacent_5p upward } 0 5 {R51R:C -> R50R:G: adjacent_3p downward } 0 6 {R50R:G -> R64R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {R64R:C -> R50R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {R51R:C -> R52R:G: adjacent_5p } 0 9 {R52R:G -> R51R:C: adjacent_3p } 0 10 {R51R:C -> R63R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {R63R:G -> R51R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {R52R:G -> R62R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {R62R:C -> R52R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {R52R:G -> R63R:G: outward } 0 15 {R63R:G -> R52R:G: outward } 0 16 {R62R:C -> R63R:G: adjacent_5p } 0 17 {R63R:G -> R62R:C: adjacent_3p } 0 18 {R63R:G -> R64R:C: adjacent_5p upward } 0 19 {R64R:C -> R63R:G: adjacent_3p downward } 0 20 {R64R:C -> R65R:U: adjacent_5p upward } 0 21 {R65R:U -> R64R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 R50R:G 0 1 R51R:C 0 2 R52R:G 0 3 R53R:G 0 4 R61R:C 0 5 R62R:C 0 6 R63R:G 0 7 R64R:C 0 [Edges] 0 {R50R:G -> R51R:C: adjacent_5p upward } 0 1 {R51R:C -> R50R:G: adjacent_3p downward } 0 2 {R50R:G -> R64R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {R64R:C -> R50R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {R51R:C -> R52R:G: adjacent_5p } 0 5 {R52R:G -> R51R:C: adjacent_3p } 0 6 {R51R:C -> R63R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R63R:G -> R51R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R52R:G -> R53R:G: adjacent_5p upward } 0 9 {R53R:G -> R52R:G: adjacent_3p downward } 0 10 {R52R:G -> R62R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {R62R:C -> R52R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {R52R:G -> R63R:G: outward } 0 13 {R63R:G -> R52R:G: outward } 0 14 {R53R:G -> R61R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {R61R:C -> R53R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {R61R:C -> R62R:C: adjacent_5p } 0 17 {R62R:C -> R61R:C: adjacent_3p } 0 18 {R62R:C -> R63R:G: adjacent_5p } 0 19 {R63R:G -> R62R:C: adjacent_3p } 0 20 {R63R:G -> R64R:C: adjacent_5p upward } 0 21 {R64R:C -> R63R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 C2R:G 0 1 C3R:C 0 2 C4R:G 0 3 C5R:G 0 4 C68R:C 0 5 C69R:C 0 6 C70R:G 0 7 C71R:C 0 [Edges] 0 {C2R:G -> C3R:C: adjacent_5p upward } 0 1 {C3R:C -> C2R:G: adjacent_3p downward } 0 2 {C2R:G -> C71R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C71R:C -> C2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C3R:C -> C4R:G: adjacent_5p upward } 0 5 {C4R:G -> C3R:C: adjacent_3p downward } 0 6 {C3R:C -> C70R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C70R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:G -> C5R:G: adjacent_5p upward } 0 9 {C5R:G -> C4R:G: adjacent_3p downward } 0 10 {C4R:G -> C69R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C69R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C4R:G -> C70R:G: outward } 0 13 {C70R:G -> C4R:G: outward } 0 14 {C5R:G -> C68R:C: pairing antiparallel cis Ww/Ww } 0 15 {C68R:C -> C5R:G: pairing antiparallel cis Ww/Ww } 0 16 {C68R:C -> C69R:C: adjacent_5p } 0 17 {C69R:C -> C68R:C: adjacent_3p } 0 18 {C69R:C -> C70R:G: adjacent_5p } 0 19 {C70R:G -> C69R:C: adjacent_3p } 0 20 {C70R:G -> C71R:C: adjacent_5p upward } 0 21 {C71R:C -> C70R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C3R:C 0 1 C4R:G 0 2 C5R:G 0 3 C6R:G 0 4 C67R:C 0 5 C68R:C 0 6 C69R:C 0 7 C70R:G 0 [Edges] 0 {C3R:C -> C4R:G: adjacent_5p upward } 0 1 {C4R:G -> C3R:C: adjacent_3p downward } 0 2 {C3R:C -> C70R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C70R:G -> C3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C4R:G -> C5R:G: adjacent_5p upward } 0 5 {C5R:G -> C4R:G: adjacent_3p downward } 0 6 {C4R:G -> C69R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C69R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:G -> C70R:G: outward } 0 9 {C70R:G -> C4R:G: outward } 0 10 {C5R:G -> C6R:G: adjacent_5p upward } 0 11 {C6R:G -> C5R:G: adjacent_3p downward } 0 12 {C5R:G -> C68R:C: pairing antiparallel cis Ww/Ww } 0 13 {C68R:C -> C5R:G: pairing antiparallel cis Ww/Ww } 0 14 {C6R:G -> C67R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C67R:C -> C6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C6R:G -> C68R:C: outward } 0 17 {C68R:C -> C6R:G: outward } 0 18 {C67R:C -> C68R:C: adjacent_5p } 0 19 {C68R:C -> C67R:C: adjacent_3p } 0 20 {C68R:C -> C69R:C: adjacent_5p } 0 21 {C69R:C -> C68R:C: adjacent_3p } 0 22 {C69R:C -> C70R:G: adjacent_5p } 0 23 {C70R:G -> C69R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 C4R:G 0 1 C5R:G 0 2 C6R:G 0 3 C7R:G 0 4 C66R:C 0 5 C67R:C 0 6 C68R:C 0 7 C69R:C 0 [Edges] 0 {C4R:G -> C5R:G: adjacent_5p upward } 0 1 {C5R:G -> C4R:G: adjacent_3p downward } 0 2 {C4R:G -> C69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C69R:C -> C4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C5R:G -> C6R:G: adjacent_5p upward } 0 5 {C6R:G -> C5R:G: adjacent_3p downward } 0 6 {C5R:G -> C68R:C: pairing antiparallel cis Ww/Ww } 0 7 {C68R:C -> C5R:G: pairing antiparallel cis Ww/Ww } 0 8 {C6R:G -> C7R:G: adjacent_5p upward } 0 9 {C7R:G -> C6R:G: adjacent_3p downward } 0 10 {C6R:G -> C67R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C67R:C -> C6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C6R:G -> C68R:C: outward } 0 13 {C68R:C -> C6R:G: outward } 0 14 {C7R:G -> C66R:C: pairing antiparallel cis Ww/Ww } 0 15 {C66R:C -> C7R:G: pairing antiparallel cis Ww/Ww } 0 16 {C66R:C -> C67R:C: adjacent_5p upward } 0 17 {C67R:C -> C66R:C: adjacent_3p downward } 0 18 {C67R:C -> C68R:C: adjacent_5p } 0 19 {C68R:C -> C67R:C: adjacent_3p } 0 20 {C68R:C -> C69R:C: adjacent_5p } 0 21 {C69R:C -> C68R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C10R:G 0 1 C11R:A 0 2 C12R:G 0 3 C13R:C 0 4 C22R:G 0 5 C23R:C 0 6 C24R:U 0 7 C25R:C 0 [Edges] 0 {C10R:G -> C11R:A: adjacent_5p upward } 0 1 {C11R:A -> C10R:G: adjacent_3p downward } 0 2 {C10R:G -> C25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C25R:C -> C10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C11R:A -> C12R:G: adjacent_5p upward } 0 5 {C12R:G -> C11R:A: adjacent_3p downward } 0 6 {C11R:A -> C24R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C24R:U -> C11R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C12R:G -> C13R:C: adjacent_5p upward } 0 9 {C13R:C -> C12R:G: adjacent_3p downward } 0 10 {C12R:G -> C23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C23R:C -> C12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C13R:C -> C22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {C22R:G -> C13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {C22R:G -> C23R:C: adjacent_5p upward } 0 15 {C23R:C -> C22R:G: adjacent_3p downward } 0 16 {C23R:C -> C24R:U: adjacent_5p upward } 0 17 {C24R:U -> C23R:C: adjacent_3p downward } 0 18 {C24R:U -> C25R:C: adjacent_5p } 0 19 {C25R:C -> C24R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C26R:G 0 1 C27R:U 0 2 C28R:C 0 3 C29R:G 0 4 C41R:C 0 5 C42R:G 0 6 C43R:A 0 7 C44R:A 0 [Edges] 0 {C26R:G -> C27R:U: adjacent_5p upward } 0 1 {C27R:U -> C26R:G: adjacent_3p downward } 0 2 {C26R:G -> C44R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {C44R:A -> C26R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {C27R:U -> C28R:C: adjacent_5p upward } 0 5 {C28R:C -> C27R:U: adjacent_3p downward } 0 6 {C27R:U -> C43R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C43R:A -> C27R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C28R:C -> C29R:G: adjacent_5p upward } 0 9 {C29R:G -> C28R:C: adjacent_3p downward } 0 10 {C28R:C -> C42R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C42R:G -> C28R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C29R:G -> C41R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C41R:C -> C29R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C29R:G -> C42R:G: outward } 0 15 {C42R:G -> C29R:G: outward } 0 16 {C41R:C -> C42R:G: adjacent_5p } 0 17 {C42R:G -> C41R:C: adjacent_3p } 0 18 {C42R:G -> C43R:A: adjacent_5p upward } 0 19 {C43R:A -> C42R:G: adjacent_3p downward } 0 20 {C43R:A -> C44R:A: adjacent_5p upward } 0 21 {C44R:A -> C43R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C27R:U 0 1 C28R:C 0 2 C29R:G 0 3 C30R:G 0 4 C40R:C 0 5 C41R:C 0 6 C42R:G 0 7 C43R:A 0 [Edges] 0 {C27R:U -> C28R:C: adjacent_5p upward } 0 1 {C28R:C -> C27R:U: adjacent_3p downward } 0 2 {C27R:U -> C43R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C43R:A -> C27R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C28R:C -> C29R:G: adjacent_5p upward } 0 5 {C29R:G -> C28R:C: adjacent_3p downward } 0 6 {C28R:C -> C42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C42R:G -> C28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C29R:G -> C30R:G: adjacent_5p upward } 0 9 {C30R:G -> C29R:G: adjacent_3p downward } 0 10 {C29R:G -> C41R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C41R:C -> C29R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C29R:G -> C42R:G: outward } 0 13 {C42R:G -> C29R:G: outward } 0 14 {C30R:G -> C40R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C40R:C -> C30R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C40R:C -> C41R:C: adjacent_5p } 0 17 {C41R:C -> C40R:C: adjacent_3p } 0 18 {C41R:C -> C42R:G: adjacent_5p } 0 19 {C42R:G -> C41R:C: adjacent_3p } 0 20 {C42R:G -> C43R:A: adjacent_5p upward } 0 21 {C43R:A -> C42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C28R:C 0 1 C29R:G 0 2 C30R:G 0 3 C31R:G 0 4 C39R:C 0 5 C40R:C 0 6 C41R:C 0 7 C42R:G 0 [Edges] 0 {C28R:C -> C29R:G: adjacent_5p upward } 0 1 {C29R:G -> C28R:C: adjacent_3p downward } 0 2 {C28R:C -> C42R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C42R:G -> C28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C29R:G -> C30R:G: adjacent_5p upward } 0 5 {C30R:G -> C29R:G: adjacent_3p downward } 0 6 {C29R:G -> C41R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C41R:C -> C29R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C29R:G -> C42R:G: outward } 0 9 {C42R:G -> C29R:G: outward } 0 10 {C30R:G -> C31R:G: adjacent_5p upward } 0 11 {C31R:G -> C30R:G: adjacent_3p downward } 0 12 {C30R:G -> C40R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C40R:C -> C30R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C31R:G -> C39R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C39R:C -> C31R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C39R:C -> C40R:C: adjacent_5p upward } 0 17 {C40R:C -> C39R:C: adjacent_3p downward } 0 18 {C40R:C -> C41R:C: adjacent_5p } 0 19 {C41R:C -> C40R:C: adjacent_3p } 0 20 {C41R:C -> C42R:G: adjacent_5p } 0 21 {C42R:G -> C41R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 C49R:G 0 1 C50R:U 0 2 C51R:C 0 3 C52R:G 0 4 C62R:C 0 5 C63R:G 0 6 C64R:G 0 7 C65R:C 0 [Edges] 0 {C49R:G -> C50R:U: adjacent_5p upward } 0 1 {C50R:U -> C49R:G: adjacent_3p downward } 0 2 {C49R:G -> C65R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C65R:C -> C49R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C50R:U -> C51R:C: adjacent_5p upward } 0 5 {C51R:C -> C50R:U: adjacent_3p downward } 0 6 {C50R:U -> C64R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {C64R:G -> C50R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {C51R:C -> C52R:G: adjacent_5p upward } 0 9 {C52R:G -> C51R:C: adjacent_3p downward } 0 10 {C51R:C -> C63R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C63R:G -> C51R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C52R:G -> C62R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C62R:C -> C52R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C52R:G -> C63R:G: outward } 0 15 {C63R:G -> C52R:G: outward } 0 16 {C62R:C -> C63R:G: adjacent_5p } 0 17 {C63R:G -> C62R:C: adjacent_3p } 0 18 {C63R:G -> C64R:G: adjacent_5p upward } 0 19 {C64R:G -> C63R:G: adjacent_3p downward } 0 20 {C64R:G -> C65R:C: adjacent_5p upward } 0 21 {C65R:C -> C64R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C50R:U 0 1 C51R:C 0 2 C52R:G 0 3 C53R:G 0 4 C61R:C 0 5 C62R:C 0 6 C63R:G 0 7 C64R:G 0 [Edges] 0 {C50R:U -> C51R:C: adjacent_5p upward } 0 1 {C51R:C -> C50R:U: adjacent_3p downward } 0 2 {C50R:U -> C64R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {C64R:G -> C50R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {C51R:C -> C52R:G: adjacent_5p upward } 0 5 {C52R:G -> C51R:C: adjacent_3p downward } 0 6 {C51R:C -> C63R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C63R:G -> C51R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C52R:G -> C53R:G: adjacent_5p upward } 0 9 {C53R:G -> C52R:G: adjacent_3p downward } 0 10 {C52R:G -> C62R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C62R:C -> C52R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {C52R:G -> C63R:G: outward } 0 13 {C63R:G -> C52R:G: outward } 0 14 {C53R:G -> C61R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C61R:C -> C53R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C61R:C -> C62R:C: adjacent_5p } 0 17 {C62R:C -> C61R:C: adjacent_3p } 0 18 {C62R:C -> C63R:G: adjacent_5p } 0 19 {C63R:G -> C62R:C: adjacent_3p } 0 20 {C63R:G -> C64R:G: adjacent_5p upward } 0 21 {C64R:G -> C63R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D2R:G 0 1 D3R:C 0 2 D4R:G 0 3 D5R:G 0 4 D68R:C 0 5 D69R:C 0 6 D70R:G 0 7 D71R:C 0 [Edges] 0 {D2R:G -> D3R:C: adjacent_5p upward } 0 1 {D3R:C -> D2R:G: adjacent_3p downward } 0 2 {D2R:G -> D71R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D71R:C -> D2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D3R:C -> D4R:G: adjacent_5p upward } 0 5 {D4R:G -> D3R:C: adjacent_3p downward } 0 6 {D3R:C -> D70R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D70R:G -> D3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D4R:G -> D5R:G: adjacent_5p upward } 0 9 {D5R:G -> D4R:G: adjacent_3p downward } 0 10 {D4R:G -> D69R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D69R:C -> D4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D4R:G -> D70R:G: outward } 0 13 {D70R:G -> D4R:G: outward } 0 14 {D5R:G -> D68R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D68R:C -> D5R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D68R:C -> D69R:C: adjacent_5p } 0 17 {D69R:C -> D68R:C: adjacent_3p } 0 18 {D69R:C -> D70R:G: adjacent_5p } 0 19 {D70R:G -> D69R:C: adjacent_3p } 0 20 {D70R:G -> D71R:C: adjacent_5p upward } 0 21 {D71R:C -> D70R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D3R:C 0 1 D4R:G 0 2 D5R:G 0 3 D6R:G 0 4 D67R:C 0 5 D68R:C 0 6 D69R:C 0 7 D70R:G 0 [Edges] 0 {D3R:C -> D4R:G: adjacent_5p upward } 0 1 {D4R:G -> D3R:C: adjacent_3p downward } 0 2 {D3R:C -> D70R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D70R:G -> D3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D4R:G -> D5R:G: adjacent_5p upward } 0 5 {D5R:G -> D4R:G: adjacent_3p downward } 0 6 {D4R:G -> D69R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D69R:C -> D4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D4R:G -> D70R:G: outward } 0 9 {D70R:G -> D4R:G: outward } 0 10 {D5R:G -> D6R:G: adjacent_5p upward } 0 11 {D6R:G -> D5R:G: adjacent_3p downward } 0 12 {D5R:G -> D68R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D68R:C -> D5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D6R:G -> D67R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D67R:C -> D6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D6R:G -> D68R:C: outward } 0 17 {D68R:C -> D6R:G: outward } 0 18 {D67R:C -> D68R:C: adjacent_5p } 0 19 {D68R:C -> D67R:C: adjacent_3p } 0 20 {D68R:C -> D69R:C: adjacent_5p } 0 21 {D69R:C -> D68R:C: adjacent_3p } 0 22 {D69R:C -> D70R:G: adjacent_5p } 0 23 {D70R:G -> D69R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 D4R:G 0 1 D5R:G 0 2 D6R:G 0 3 D7R:G 0 4 D66R:C 0 5 D67R:C 0 6 D68R:C 0 7 D69R:C 0 [Edges] 0 {D4R:G -> D5R:G: adjacent_5p upward } 0 1 {D5R:G -> D4R:G: adjacent_3p downward } 0 2 {D4R:G -> D69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D69R:C -> D4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D5R:G -> D6R:G: adjacent_5p upward } 0 5 {D6R:G -> D5R:G: adjacent_3p downward } 0 6 {D5R:G -> D68R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D68R:C -> D5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D6R:G -> D7R:G: adjacent_5p upward } 0 9 {D7R:G -> D6R:G: adjacent_3p downward } 0 10 {D6R:G -> D67R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D67R:C -> D6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D6R:G -> D68R:C: outward } 0 13 {D68R:C -> D6R:G: outward } 0 14 {D7R:G -> D66R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D66R:C -> D7R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D66R:C -> D67R:C: adjacent_5p upward } 0 17 {D67R:C -> D66R:C: adjacent_3p downward } 0 18 {D67R:C -> D68R:C: adjacent_5p } 0 19 {D68R:C -> D67R:C: adjacent_3p } 0 20 {D68R:C -> D69R:C: adjacent_5p } 0 21 {D69R:C -> D68R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D10R:G 0 1 D11R:A 0 2 D12R:G 0 3 D13R:C 0 4 D22R:G 0 5 D23R:C 0 6 D24R:U 0 7 D25R:C 0 [Edges] 0 {D10R:G -> D11R:A: adjacent_5p upward } 0 1 {D11R:A -> D10R:G: adjacent_3p downward } 0 2 {D10R:G -> D25R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D25R:C -> D10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D11R:A -> D12R:G: adjacent_5p upward } 0 5 {D12R:G -> D11R:A: adjacent_3p downward } 0 6 {D11R:A -> D24R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D24R:U -> D11R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D12R:G -> D13R:C: adjacent_5p upward } 0 9 {D13R:C -> D12R:G: adjacent_3p downward } 0 10 {D12R:G -> D23R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D23R:C -> D12R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D13R:C -> D22R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D22R:G -> D13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D22R:G -> D23R:C: adjacent_5p upward } 0 15 {D23R:C -> D22R:G: adjacent_3p downward } 0 16 {D23R:C -> D24R:U: adjacent_5p } 0 17 {D24R:U -> D23R:C: adjacent_3p } 0 18 {D24R:U -> D25R:C: adjacent_5p } 0 19 {D25R:C -> D24R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D26R:G 0 1 D27R:U 0 2 D28R:C 0 3 D29R:G 0 4 D41R:C 0 5 D42R:G 0 6 D43R:A 0 7 D44R:A 0 [Edges] 0 {D26R:G -> D27R:U: adjacent_5p upward } 0 1 {D27R:U -> D26R:G: adjacent_3p downward } 0 2 {D26R:G -> D44R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {D44R:A -> D26R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {D27R:U -> D28R:C: adjacent_5p upward } 0 5 {D28R:C -> D27R:U: adjacent_3p downward } 0 6 {D27R:U -> D43R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D43R:A -> D27R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {D28R:C -> D29R:G: adjacent_5p upward } 0 9 {D29R:G -> D28R:C: adjacent_3p downward } 0 10 {D28R:C -> D42R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D42R:G -> D28R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D29R:G -> D41R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D41R:C -> D29R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D29R:G -> D42R:G: outward } 0 15 {D42R:G -> D29R:G: outward } 0 16 {D41R:C -> D42R:G: adjacent_5p } 0 17 {D42R:G -> D41R:C: adjacent_3p } 0 18 {D42R:G -> D43R:A: adjacent_5p upward } 0 19 {D43R:A -> D42R:G: adjacent_3p downward } 0 20 {D43R:A -> D44R:A: adjacent_5p upward } 0 21 {D44R:A -> D43R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D27R:U 0 1 D28R:C 0 2 D29R:G 0 3 D30R:G 0 4 D40R:C 0 5 D41R:C 0 6 D42R:G 0 7 D43R:A 0 [Edges] 0 {D27R:U -> D28R:C: adjacent_5p upward } 0 1 {D28R:C -> D27R:U: adjacent_3p downward } 0 2 {D27R:U -> D43R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D43R:A -> D27R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D28R:C -> D29R:G: adjacent_5p upward } 0 5 {D29R:G -> D28R:C: adjacent_3p downward } 0 6 {D28R:C -> D42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D42R:G -> D28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D29R:G -> D30R:G: adjacent_5p upward } 0 9 {D30R:G -> D29R:G: adjacent_3p downward } 0 10 {D29R:G -> D41R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D41R:C -> D29R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D29R:G -> D42R:G: outward } 0 13 {D42R:G -> D29R:G: outward } 0 14 {D30R:G -> D40R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D40R:C -> D30R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D40R:C -> D41R:C: adjacent_5p } 0 17 {D41R:C -> D40R:C: adjacent_3p } 0 18 {D41R:C -> D42R:G: adjacent_5p } 0 19 {D42R:G -> D41R:C: adjacent_3p } 0 20 {D42R:G -> D43R:A: adjacent_5p upward } 0 21 {D43R:A -> D42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 D28R:C 0 1 D29R:G 0 2 D30R:G 0 3 D31R:G 0 4 D39R:C 0 5 D40R:C 0 6 D41R:C 0 7 D42R:G 0 [Edges] 0 {D28R:C -> D29R:G: adjacent_5p upward } 0 1 {D29R:G -> D28R:C: adjacent_3p downward } 0 2 {D28R:C -> D42R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D42R:G -> D28R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D29R:G -> D30R:G: adjacent_5p upward } 0 5 {D30R:G -> D29R:G: adjacent_3p downward } 0 6 {D29R:G -> D41R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D41R:C -> D29R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D29R:G -> D42R:G: outward } 0 9 {D42R:G -> D29R:G: outward } 0 10 {D30R:G -> D31R:G: adjacent_5p upward } 0 11 {D31R:G -> D30R:G: adjacent_3p downward } 0 12 {D30R:G -> D40R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D40R:C -> D30R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D31R:G -> D39R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {D39R:C -> D31R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {D39R:C -> D40R:C: adjacent_5p upward } 0 17 {D40R:C -> D39R:C: adjacent_3p downward } 0 18 {D40R:C -> D41R:C: adjacent_5p } 0 19 {D41R:C -> D40R:C: adjacent_3p } 0 20 {D41R:C -> D42R:G: adjacent_5p } 0 21 {D42R:G -> D41R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 D49R:G 0 1 D50R:U 0 2 D51R:C 0 3 D52R:G 0 4 D62R:C 0 5 D63R:G 0 6 D64R:G 0 7 D65R:C 0 [Edges] 0 {D49R:G -> D50R:U: adjacent_5p upward } 0 1 {D50R:U -> D49R:G: adjacent_3p downward } 0 2 {D49R:G -> D65R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D65R:C -> D49R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D50R:U -> D51R:C: adjacent_5p upward } 0 5 {D51R:C -> D50R:U: adjacent_3p downward } 0 6 {D50R:U -> D64R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {D64R:G -> D50R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {D51R:C -> D52R:G: adjacent_5p upward } 0 9 {D52R:G -> D51R:C: adjacent_3p downward } 0 10 {D51R:C -> D63R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D63R:G -> D51R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D52R:G -> D62R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D62R:C -> D52R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D62R:C -> D63R:G: adjacent_5p } 0 15 {D63R:G -> D62R:C: adjacent_3p } 0 16 {D63R:G -> D64R:G: adjacent_5p upward } 0 17 {D64R:G -> D63R:G: adjacent_3p downward } 0 18 {D64R:G -> D65R:C: adjacent_5p upward } 0 19 {D65R:C -> D64R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 D50R:U 0 1 D51R:C 0 2 D52R:G 0 3 D53R:G 0 4 D61R:C 0 5 D62R:C 0 6 D63R:G 0 7 D64R:G 0 [Edges] 0 {D50R:U -> D51R:C: adjacent_5p upward } 0 1 {D51R:C -> D50R:U: adjacent_3p downward } 0 2 {D50R:U -> D64R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {D64R:G -> D50R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {D51R:C -> D52R:G: adjacent_5p upward } 0 5 {D52R:G -> D51R:C: adjacent_3p downward } 0 6 {D51R:C -> D63R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D63R:G -> D51R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D52R:G -> D53R:G: adjacent_5p upward } 0 9 {D53R:G -> D52R:G: adjacent_3p downward } 0 10 {D52R:G -> D62R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {D62R:C -> D52R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {D53R:G -> D61R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {D61R:C -> D53R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {D61R:C -> D62R:C: adjacent_5p } 0 15 {D62R:C -> D61R:C: adjacent_3p } 0 16 {D62R:C -> D63R:G: adjacent_5p } 0 17 {D63R:G -> D62R:C: adjacent_3p } 0 18 {D63R:G -> D64R:G: adjacent_5p upward } 0 19 {D64R:G -> D63R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:C 0 2 A5R:G 0 3 A6R:U 0 4 B43R:U 0 5 B44R:C 0 6 B45R:G 0 7 B46R:C 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> B46R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B46R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> B45R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B45R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A6R:U: adjacent_5p upward } 0 9 {A6R:U -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> B44R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B44R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> B45R:G: outward } 0 13 {B45R:G -> A5R:G: outward } 0 14 {A6R:U -> B43R:U: pairing antiparallel cis XVI Ws/Ww } 0 15 {B43R:U -> A6R:U: pairing antiparallel cis XVI Ww/Ws } 0 16 {B43R:U -> B44R:C: adjacent_5p upward } 0 17 {B44R:C -> B43R:U: adjacent_3p downward } 0 18 {B44R:C -> B45R:G: adjacent_5p upward } 0 19 {B45R:G -> B44R:C: adjacent_3p downward } 0 20 {B45R:G -> B46R:C: adjacent_5p upward } 0 21 {B46R:C -> B45R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:G 0 2 A6R:U 0 3 A7R:C 0 4 B42R:G 0 5 B43R:U 0 6 B44R:C 0 7 B45R:G 0 [Edges] 0 {A4R:C -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> B45R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B45R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:G -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> B44R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B44R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> B45R:G: outward } 0 9 {B45R:G -> A5R:G: outward } 0 10 {A6R:U -> A7R:C: adjacent_5p upward } 0 11 {A7R:C -> A6R:U: adjacent_3p downward } 0 12 {A6R:U -> B43R:U: pairing antiparallel cis XVI Ws/Ww } 0 13 {B43R:U -> A6R:U: pairing antiparallel cis XVI Ww/Ws } 0 14 {A7R:C -> B42R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B42R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B42R:G -> B43R:U: adjacent_5p upward } 0 17 {B43R:U -> B42R:G: adjacent_3p downward } 0 18 {B43R:U -> B44R:C: adjacent_5p upward } 0 19 {B44R:C -> B43R:U: adjacent_3p downward } 0 20 {B44R:C -> B45R:G: adjacent_5p upward } 0 21 {B45R:G -> B44R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:C 0 1 A10R:U 0 2 A11R:C 0 3 A12R:C 0 4 B36R:G 0 5 B37R:G 0 6 B38R:A 0 7 B39R:A 0 [Edges] 0 {A9R:C -> A10R:U: adjacent_5p upward } 0 1 {A10R:U -> A9R:C: adjacent_3p downward } 0 2 {A9R:C -> B39R:A: pairing antiparallel cis one_hbond 71 Wh/Ww } 0 3 {B39R:A -> A9R:C: pairing antiparallel cis one_hbond 71 Ww/Wh } 0 4 {A10R:U -> A11R:C: adjacent_5p upward } 0 5 {A11R:C -> A10R:U: adjacent_3p downward } 0 6 {A10R:U -> B38R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B38R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:C -> A12R:C: adjacent_5p upward } 0 9 {A12R:C -> A11R:C: adjacent_3p downward } 0 10 {A11R:C -> B37R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B37R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:C -> B36R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B36R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B36R:G -> B37R:G: adjacent_5p upward } 0 15 {B37R:G -> B36R:G: adjacent_3p downward } 0 16 {B37R:G -> B38R:A: adjacent_5p upward } 0 17 {B38R:A -> B37R:G: adjacent_3p downward } 0 18 {B38R:A -> B39R:A: adjacent_5p upward } 0 19 {B39R:A -> B38R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:U 0 1 A11R:C 0 2 A12R:C 0 3 A13R:G 0 4 B35R:C 0 5 B36R:G 0 6 B37R:G 0 7 B38R:A 0 [Edges] 0 {A10R:U -> A11R:C: adjacent_5p upward } 0 1 {A11R:C -> A10R:U: adjacent_3p downward } 0 2 {A10R:U -> B38R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B38R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A11R:C -> A12R:C: adjacent_5p upward } 0 5 {A12R:C -> A11R:C: adjacent_3p downward } 0 6 {A11R:C -> B37R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B37R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A12R:C -> A13R:G: adjacent_5p upward } 0 9 {A13R:G -> A12R:C: adjacent_3p downward } 0 10 {A12R:C -> B36R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B36R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:G -> B35R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B35R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A13R:G -> B36R:G: outward } 0 15 {B36R:G -> A13R:G: outward } 0 16 {B35R:C -> B36R:G: adjacent_5p } 0 17 {B36R:G -> B35R:C: adjacent_3p } 0 18 {B36R:G -> B37R:G: adjacent_5p upward } 0 19 {B37R:G -> B36R:G: adjacent_3p downward } 0 20 {B37R:G -> B38R:A: adjacent_5p upward } 0 21 {B38R:A -> B37R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A11R:C 0 1 A12R:C 0 2 A13R:G 0 3 A14R:G 0 4 B34R:C 0 5 B35R:C 0 6 B36R:G 0 7 B37R:G 0 [Edges] 0 {A11R:C -> A12R:C: adjacent_5p upward } 0 1 {A12R:C -> A11R:C: adjacent_3p downward } 0 2 {A11R:C -> B37R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B37R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:C -> A13R:G: adjacent_5p upward } 0 5 {A13R:G -> A12R:C: adjacent_3p downward } 0 6 {A12R:C -> B36R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B36R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:G -> A14R:G: adjacent_5p upward } 0 9 {A14R:G -> A13R:G: adjacent_3p downward } 0 10 {A13R:G -> B35R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B35R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A13R:G -> B36R:G: outward } 0 13 {B36R:G -> A13R:G: outward } 0 14 {A14R:G -> B34R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B34R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B34R:C -> B35R:C: adjacent_5p upward } 0 17 {B35R:C -> B34R:C: adjacent_3p downward } 0 18 {B35R:C -> B36R:G: adjacent_5p } 0 19 {B36R:G -> B35R:C: adjacent_3p } 0 20 {B36R:G -> B37R:G: adjacent_5p upward } 0 21 {B37R:G -> B36R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A12R:C 0 1 A13R:G 0 2 A14R:G 0 3 A15R:A 0 4 B33R:U 0 5 B34R:C 0 6 B35R:C 0 7 B36R:G 0 [Edges] 0 {A12R:C -> A13R:G: adjacent_5p upward } 0 1 {A13R:G -> A12R:C: adjacent_3p downward } 0 2 {A12R:C -> B36R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B36R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:G -> A14R:G: adjacent_5p upward } 0 5 {A14R:G -> A13R:G: adjacent_3p downward } 0 6 {A13R:G -> B35R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B35R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:G -> B36R:G: outward } 0 9 {B36R:G -> A13R:G: outward } 0 10 {A14R:G -> A15R:A: adjacent_5p upward } 0 11 {A15R:A -> A14R:G: adjacent_3p downward } 0 12 {A14R:G -> B34R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B34R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A15R:A -> B33R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B33R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B33R:U -> B34R:C: adjacent_5p upward } 0 17 {B34R:C -> B33R:U: adjacent_3p downward } 0 18 {B34R:C -> B35R:C: adjacent_5p upward } 0 19 {B35R:C -> B34R:C: adjacent_3p downward } 0 20 {B35R:C -> B36R:G: adjacent_5p } 0 21 {B36R:G -> B35R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A17R:A 0 1 A18R:A 0 2 A19R:G 0 3 A20R:U 0 4 B29R:U 0 5 B30R:C 0 6 B31R:G 0 7 B32R:C 0 [Edges] 0 {A17R:A -> A18R:A: adjacent_5p } 0 1 {A18R:A -> A17R:A: adjacent_3p } 0 2 {A17R:A -> B32R:C: pairing antiparallel cis one_hbond 74 Ss/Wh } 0 3 {B32R:C -> A17R:A: pairing antiparallel cis one_hbond 74 Wh/Ss } 0 4 {A18R:A -> A19R:G: adjacent_5p } 0 5 {A19R:G -> A18R:A: adjacent_3p } 0 6 {A18R:A -> B31R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 7 {B31R:G -> A18R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 8 {A19R:G -> A20R:U: adjacent_5p upward } 0 9 {A20R:U -> A19R:G: adjacent_3p downward } 0 10 {A19R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B30R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A19R:G -> B31R:G: outward } 0 13 {B31R:G -> A19R:G: outward } 0 14 {A20R:U -> B29R:U: pairing antiparallel cis XVI Ww/Ws } 0 15 {B29R:U -> A20R:U: pairing antiparallel cis XVI Ws/Ww } 0 16 {B29R:U -> B30R:C: adjacent_5p upward } 0 17 {B30R:C -> B29R:U: adjacent_3p downward } 0 18 {B30R:C -> B31R:G: adjacent_5p upward } 0 19 {B31R:G -> B30R:C: adjacent_3p downward } 0 20 {B31R:G -> B32R:C: adjacent_5p upward } 0 21 {B32R:C -> B31R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A18R:A 0 1 A19R:G 0 2 A20R:U 0 3 A21R:C 0 4 B28R:G 0 5 B29R:U 0 6 B30R:C 0 7 B31R:G 0 [Edges] 0 {A18R:A -> A19R:G: adjacent_5p } 0 1 {A19R:G -> A18R:A: adjacent_3p } 0 2 {A18R:A -> B31R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 3 {B31R:G -> A18R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 4 {A19R:G -> A20R:U: adjacent_5p upward } 0 5 {A20R:U -> A19R:G: adjacent_3p downward } 0 6 {A19R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B30R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A19R:G -> B31R:G: outward } 0 9 {B31R:G -> A19R:G: outward } 0 10 {A20R:U -> A21R:C: adjacent_5p upward } 0 11 {A21R:C -> A20R:U: adjacent_3p downward } 0 12 {A20R:U -> B29R:U: pairing antiparallel cis XVI Ww/Ws } 0 13 {B29R:U -> A20R:U: pairing antiparallel cis XVI Ws/Ww } 0 14 {A21R:C -> B28R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B28R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B28R:G -> B29R:U: adjacent_5p upward } 0 17 {B29R:U -> B28R:G: adjacent_3p downward } 0 18 {B29R:U -> B30R:C: adjacent_5p upward } 0 19 {B30R:C -> B29R:U: adjacent_3p downward } 0 20 {B30R:C -> B31R:G: adjacent_5p upward } 0 21 {B31R:G -> B30R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A19R:G 0 1 A20R:U 0 2 A21R:C 0 3 A22R:G 0 4 B27R:C 0 5 B28R:G 0 6 B29R:U 0 7 B30R:C 0 [Edges] 0 {A19R:G -> A20R:U: adjacent_5p upward } 0 1 {A20R:U -> A19R:G: adjacent_3p downward } 0 2 {A19R:G -> B30R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B30R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A20R:U -> A21R:C: adjacent_5p upward } 0 5 {A21R:C -> A20R:U: adjacent_3p downward } 0 6 {A20R:U -> B29R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {B29R:U -> A20R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {A21R:C -> A22R:G: adjacent_5p upward } 0 9 {A22R:G -> A21R:C: adjacent_3p downward } 0 10 {A21R:C -> B28R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B28R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A22R:G -> B27R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B27R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A22R:G -> B28R:G: outward } 0 15 {B28R:G -> A22R:G: outward } 0 16 {B27R:C -> B28R:G: adjacent_5p upward } 0 17 {B28R:G -> B27R:C: adjacent_3p downward } 0 18 {B28R:G -> B29R:U: adjacent_5p upward } 0 19 {B29R:U -> B28R:G: adjacent_3p downward } 0 20 {B29R:U -> B30R:C: adjacent_5p upward } 0 21 {B30R:C -> B29R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A20R:U 0 1 A21R:C 0 2 A22R:G 0 3 A23R:C 0 4 B26R:G 0 5 B27R:C 0 6 B28R:G 0 7 B29R:U 0 [Edges] 0 {A20R:U -> A21R:C: adjacent_5p upward } 0 1 {A21R:C -> A20R:U: adjacent_3p downward } 0 2 {A20R:U -> B29R:U: pairing antiparallel cis XVI Ww/Ws } 0 3 {B29R:U -> A20R:U: pairing antiparallel cis XVI Ws/Ww } 0 4 {A21R:C -> A22R:G: adjacent_5p upward } 0 5 {A22R:G -> A21R:C: adjacent_3p downward } 0 6 {A21R:C -> B28R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B28R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A22R:G -> A23R:C: adjacent_5p upward } 0 9 {A23R:C -> A22R:G: adjacent_3p downward } 0 10 {A22R:G -> B27R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B27R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A22R:G -> B28R:G: outward } 0 13 {B28R:G -> A22R:G: outward } 0 14 {A23R:C -> B26R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B26R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B26R:G -> B27R:C: adjacent_5p upward } 0 17 {B27R:C -> B26R:G: adjacent_3p downward } 0 18 {B27R:C -> B28R:G: adjacent_5p upward } 0 19 {B28R:G -> B27R:C: adjacent_3p downward } 0 20 {B28R:G -> B29R:U: adjacent_5p upward } 0 21 {B29R:U -> B28R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:C 0 2 A4R:A 0 3 A5R:G 0 4 A19R:C 0 5 A20R:U 0 6 A21R:G 0 7 A22R:C 0 [Edges] 0 {A2R:G -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:C -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:A -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A20R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A19R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A19R:C -> A20R:U: adjacent_5p } 0 15 {A20R:U -> A19R:C: adjacent_3p } 0 16 {A20R:U -> A21R:G: adjacent_5p } 0 17 {A21R:G -> A20R:U: adjacent_3p } 0 18 {A21R:G -> A22R:C: adjacent_5p upward } 0 19 {A22R:C -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:G 0 2 A6R:A 0 3 A7R:U 0 4 A17R:A 0 5 A18R:A 0 6 A19R:C 0 7 A20R:U 0 [Edges] 0 {A4R:A -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> A20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A20R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:G -> A6R:A: adjacent_5p } 0 5 {A6R:A -> A5R:G: adjacent_3p } 0 6 {A5R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:A -> A7R:U: adjacent_5p upward } 0 9 {A7R:U -> A6R:A: adjacent_3p downward } 0 10 {A7R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A17R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A17R:A -> A18R:A: adjacent_5p upward } 0 13 {A18R:A -> A17R:A: adjacent_3p downward } 0 14 {A18R:A -> A19R:C: adjacent_5p upward } 0 15 {A19R:C -> A18R:A: adjacent_3p downward } 0 16 {A19R:C -> A20R:U: adjacent_5p } 0 17 {A20R:U -> A19R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:A 0 2 A7R:U 0 3 A8R:C 0 4 A16R:G 0 5 A17R:A 0 6 A18R:A 0 7 A19R:C 0 [Edges] 0 {A5R:G -> A6R:A: adjacent_5p } 0 1 {A6R:A -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:A -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:A: adjacent_3p downward } 0 6 {A7R:U -> A8R:C: adjacent_5p } 0 7 {A8R:C -> A7R:U: adjacent_3p } 0 8 {A7R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A17R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A8R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A16R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A16R:G -> A17R:A: adjacent_5p upward } 0 13 {A17R:A -> A16R:G: adjacent_3p downward } 0 14 {A17R:A -> A18R:A: adjacent_5p upward } 0 15 {A18R:A -> A17R:A: adjacent_3p downward } 0 16 {A18R:A -> A19R:C: adjacent_5p upward } 0 17 {A19R:C -> A18R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:A 0 2 A7R:U 0 3 A8R:U 0 4 B17R:A 0 5 B18R:A 0 6 B19R:U 0 7 B20R:U 0 [Edges] 0 {A5R:A -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> B20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B20R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:A -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> B19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:U -> A8R:U: adjacent_5p upward } 0 9 {A8R:U -> A7R:U: adjacent_3p downward } 0 10 {A7R:U -> B18R:A: pairing antiparallel cis Ws/Ww } 0 11 {B18R:A -> A7R:U: pairing antiparallel cis Ww/Ws } 0 12 {A8R:U -> B17R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B17R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B17R:A -> B18R:A: adjacent_5p upward } 0 15 {B18R:A -> B17R:A: adjacent_3p downward } 0 16 {B18R:A -> B19R:U: adjacent_5p upward } 0 17 {B19R:U -> B18R:A: adjacent_3p downward } 0 18 {B19R:U -> B20R:U: adjacent_5p upward } 0 19 {B20R:U -> B19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:C 0 3 A5R:U 0 4 A20R:A 0 5 A21R:G 0 6 A22R:C 0 7 A23R:C 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:G -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:U: adjacent_5p } 0 9 {A5R:U -> A4R:C: adjacent_3p } 0 10 {A4R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A21R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A20R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A20R:A -> A21R:G: adjacent_5p upward } 0 15 {A21R:G -> A20R:A: adjacent_3p downward } 0 16 {A21R:G -> A22R:C: adjacent_5p upward } 0 17 {A22R:C -> A21R:G: adjacent_3p downward } 0 18 {A22R:C -> A23R:C: adjacent_5p upward } 0 19 {A23R:C -> A22R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:C 0 2 A5R:U 0 3 A6R:A 0 4 A19R:U 0 5 A20R:A 0 6 A21R:G 0 7 A22R:C 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:U: adjacent_5p } 0 5 {A5R:U -> A4R:C: adjacent_3p } 0 6 {A4R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> A6R:A: adjacent_5p upward } 0 9 {A6R:A -> A5R:U: adjacent_3p downward } 0 10 {A5R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A20R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A6R:A -> A20R:A: outward } 0 15 {A20R:A -> A6R:A: outward } 0 16 {A19R:U -> A20R:A: adjacent_5p upward } 0 17 {A20R:A -> A19R:U: adjacent_3p downward } 0 18 {A20R:A -> A21R:G: adjacent_5p upward } 0 19 {A21R:G -> A20R:A: adjacent_3p downward } 0 20 {A21R:G -> A22R:C: adjacent_5p upward } 0 21 {A22R:C -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:U 0 2 A6R:A 0 3 A7R:A 0 4 A18R:U 0 5 A19R:U 0 6 A20R:A 0 7 A21R:G 0 [Edges] 0 {A4R:C -> A5R:U: adjacent_5p } 0 1 {A5R:U -> A4R:C: adjacent_3p } 0 2 {A4R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:A: adjacent_5p upward } 0 5 {A6R:A -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A20R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:A -> A7R:A: adjacent_5p upward } 0 9 {A7R:A -> A6R:A: adjacent_3p downward } 0 10 {A6R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:A -> A20R:A: outward } 0 13 {A20R:A -> A6R:A: outward } 0 14 {A7R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A18R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A18R:U -> A19R:U: adjacent_5p } 0 17 {A19R:U -> A18R:U: adjacent_3p } 0 18 {A19R:U -> A20R:A: adjacent_5p upward } 0 19 {A20R:A -> A19R:U: adjacent_3p downward } 0 20 {A20R:A -> A21R:G: adjacent_5p upward } 0 21 {A21R:G -> A20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:A 0 2 A7R:A 0 3 A8R:U 0 4 A17R:A 0 5 A18R:U 0 6 A19R:U 0 7 A20R:A 0 [Edges] 0 {A5R:U -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:U: adjacent_3p downward } 0 2 {A5R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A20R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:A -> A7R:A: adjacent_5p upward } 0 5 {A7R:A -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A19R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:A -> A20R:A: outward } 0 9 {A20R:A -> A6R:A: outward } 0 10 {A7R:A -> A8R:U: adjacent_5p upward } 0 11 {A8R:U -> A7R:A: adjacent_3p downward } 0 12 {A7R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A18R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A8R:U -> A17R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A17R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A17R:A -> A18R:U: adjacent_5p upward } 0 17 {A18R:U -> A17R:A: adjacent_3p downward } 0 18 {A18R:U -> A19R:U: adjacent_5p } 0 19 {A19R:U -> A18R:U: adjacent_3p } 0 20 {A19R:U -> A20R:A: adjacent_5p upward } 0 21 {A20R:A -> A19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:C 0 2 A7R:U 0 3 A8R:U 0 4 B61R:A 0 5 B62R:A 0 6 B63R:G 0 7 B64R:A 0 [Edges] 0 {A5R:G -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> B64R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {B64R:A -> A5R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A6R:C -> A7R:U: adjacent_5p } 0 5 {A7R:U -> A6R:C: adjacent_3p } 0 6 {A6R:C -> B63R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B63R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:U -> A8R:U: adjacent_5p upward } 0 9 {A8R:U -> A7R:U: adjacent_3p downward } 0 10 {A7R:U -> B62R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B62R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A8R:U -> B61R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B61R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B61R:A -> B62R:A: adjacent_5p upward } 0 15 {B62R:A -> B61R:A: adjacent_3p downward } 0 16 {B62R:A -> B63R:G: adjacent_5p upward } 0 17 {B63R:G -> B62R:A: adjacent_3p downward } 0 18 {B63R:G -> B64R:A: adjacent_5p upward } 0 19 {B64R:A -> B63R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:U 0 2 A8R:U 0 3 A9R:G 0 4 B60R:C 0 5 B61R:A 0 6 B62R:A 0 7 B63R:G 0 [Edges] 0 {A6R:C -> A7R:U: adjacent_5p } 0 1 {A7R:U -> A6R:C: adjacent_3p } 0 2 {A6R:C -> B63R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B63R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:U -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:U: adjacent_3p downward } 0 6 {A7R:U -> B62R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B62R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A8R:U -> A9R:G: adjacent_5p } 0 9 {A9R:G -> A8R:U: adjacent_3p } 0 10 {A8R:U -> B61R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B61R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:G -> B60R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B60R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A9R:G -> B61R:A: outward } 0 15 {B61R:A -> A9R:G: outward } 0 16 {B60R:C -> B61R:A: adjacent_5p upward } 0 17 {B61R:A -> B60R:C: adjacent_3p downward } 0 18 {B61R:A -> B62R:A: adjacent_5p upward } 0 19 {B62R:A -> B61R:A: adjacent_3p downward } 0 20 {B62R:A -> B63R:G: adjacent_5p upward } 0 21 {B63R:G -> B62R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:U 0 1 A8R:U 0 2 A9R:G 0 3 A10R:C 0 4 B59R:G 0 5 B60R:C 0 6 B61R:A 0 7 B62R:A 0 [Edges] 0 {A7R:U -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:U: adjacent_3p downward } 0 2 {A7R:U -> B62R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B62R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A8R:U -> A9R:G: adjacent_5p } 0 5 {A9R:G -> A8R:U: adjacent_3p } 0 6 {A8R:U -> B61R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B61R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:G -> A10R:C: adjacent_5p upward } 0 9 {A10R:C -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> B60R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B60R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:G -> B61R:A: outward } 0 13 {B61R:A -> A9R:G: outward } 0 14 {A10R:C -> B59R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B59R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B59R:G -> B60R:C: adjacent_5p upward } 0 17 {B60R:C -> B59R:G: adjacent_3p downward } 0 18 {B60R:C -> B61R:A: adjacent_5p upward } 0 19 {B61R:A -> B60R:C: adjacent_3p downward } 0 20 {B61R:A -> B62R:A: adjacent_5p upward } 0 21 {B62R:A -> B61R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:G 0 2 A10R:C 0 3 A11R:U 0 4 B58R:G 0 5 B59R:G 0 6 B60R:C 0 7 B61R:A 0 [Edges] 0 {A8R:U -> A9R:G: adjacent_5p } 0 1 {A9R:G -> A8R:U: adjacent_3p } 0 2 {A8R:U -> B61R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B61R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:G -> A10R:C: adjacent_5p upward } 0 5 {A10R:C -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> B60R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B60R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> B61R:A: outward } 0 9 {B61R:A -> A9R:G: outward } 0 10 {A10R:C -> A11R:U: adjacent_5p upward } 0 11 {A11R:U -> A10R:C: adjacent_3p downward } 0 12 {A10R:C -> B59R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B59R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A11R:U -> B58R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {B58R:G -> A11R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {B58R:G -> B59R:G: adjacent_5p upward } 0 17 {B59R:G -> B58R:G: adjacent_3p downward } 0 18 {B59R:G -> B60R:C: adjacent_5p upward } 0 19 {B60R:C -> B59R:G: adjacent_3p downward } 0 20 {B60R:C -> B61R:A: adjacent_5p upward } 0 21 {B61R:A -> B60R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:C 0 2 A11R:U 0 3 A12R:G 0 4 B57R:C 0 5 B58R:G 0 6 B59R:G 0 7 B60R:C 0 [Edges] 0 {A9R:G -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> B60R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B60R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:C -> A11R:U: adjacent_5p upward } 0 5 {A11R:U -> A10R:C: adjacent_3p downward } 0 6 {A10R:C -> B59R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B59R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:U -> A12R:G: adjacent_5p } 0 9 {A12R:G -> A11R:U: adjacent_3p } 0 10 {A11R:U -> B58R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B58R:G -> A11R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A12R:G -> B57R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B57R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A12R:G -> B58R:G: outward } 0 15 {B58R:G -> A12R:G: outward } 0 16 {B57R:C -> B58R:G: adjacent_5p } 0 17 {B58R:G -> B57R:C: adjacent_3p } 0 18 {B58R:G -> B59R:G: adjacent_5p upward } 0 19 {B59R:G -> B58R:G: adjacent_3p downward } 0 20 {B59R:G -> B60R:C: adjacent_5p upward } 0 21 {B60R:C -> B59R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A14R:A 0 1 A15R:G 0 2 A16R:C 0 3 A17R:G 0 4 B53R:C 0 5 B54R:G 0 6 B55R:C 0 7 B56R:A 0 [Edges] 0 {A14R:A -> A15R:G: adjacent_5p } 0 1 {A15R:G -> A14R:A: adjacent_3p } 0 2 {A14R:A -> B56R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 3 {B56R:A -> A14R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 4 {A15R:G -> A16R:C: adjacent_5p upward } 0 5 {A16R:C -> A15R:G: adjacent_3p downward } 0 6 {A15R:G -> B55R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B55R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A16R:C -> A17R:G: adjacent_5p upward } 0 9 {A17R:G -> A16R:C: adjacent_3p downward } 0 10 {A16R:C -> B54R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B54R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A17R:G -> B53R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B53R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A17R:G -> B54R:G: outward } 0 15 {B54R:G -> A17R:G: outward } 0 16 {B53R:C -> B54R:G: adjacent_5p upward } 0 17 {B54R:G -> B53R:C: adjacent_3p downward } 0 18 {B54R:G -> B55R:C: adjacent_5p upward } 0 19 {B55R:C -> B54R:G: adjacent_3p downward } 0 20 {B55R:C -> B56R:A: adjacent_5p } 0 21 {B56R:A -> B55R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A15R:G 0 1 A16R:C 0 2 A17R:G 0 3 A18R:C 0 4 B52R:G 0 5 B53R:C 0 6 B54R:G 0 7 B55R:C 0 [Edges] 0 {A15R:G -> A16R:C: adjacent_5p upward } 0 1 {A16R:C -> A15R:G: adjacent_3p downward } 0 2 {A15R:G -> B55R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B55R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A16R:C -> A17R:G: adjacent_5p upward } 0 5 {A17R:G -> A16R:C: adjacent_3p downward } 0 6 {A16R:C -> B54R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B54R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A17R:G -> A18R:C: adjacent_5p upward } 0 9 {A18R:C -> A17R:G: adjacent_3p downward } 0 10 {A17R:G -> B53R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B53R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A17R:G -> B54R:G: outward } 0 13 {B54R:G -> A17R:G: outward } 0 14 {A18R:C -> B52R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B52R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B52R:G -> B53R:C: adjacent_5p upward } 0 17 {B53R:C -> B52R:G: adjacent_3p downward } 0 18 {B53R:C -> B54R:G: adjacent_5p upward } 0 19 {B54R:G -> B53R:C: adjacent_3p downward } 0 20 {B54R:G -> B55R:C: adjacent_5p upward } 0 21 {B55R:C -> B54R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A16R:C 0 1 A17R:G 0 2 A18R:C 0 3 A19R:G 0 4 B51R:C 0 5 B52R:G 0 6 B53R:C 0 7 B54R:G 0 [Edges] 0 {A16R:C -> A17R:G: adjacent_5p upward } 0 1 {A17R:G -> A16R:C: adjacent_3p downward } 0 2 {A16R:C -> B54R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B54R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A17R:G -> A18R:C: adjacent_5p upward } 0 5 {A18R:C -> A17R:G: adjacent_3p downward } 0 6 {A17R:G -> B53R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B53R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A17R:G -> B54R:G: outward } 0 9 {B54R:G -> A17R:G: outward } 0 10 {A18R:C -> A19R:G: adjacent_5p upward } 0 11 {A19R:G -> A18R:C: adjacent_3p downward } 0 12 {A18R:C -> B52R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B52R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A19R:G -> B51R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B51R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A19R:G -> B52R:G: outward } 0 17 {B52R:G -> A19R:G: outward } 0 18 {B51R:C -> B52R:G: adjacent_5p upward } 0 19 {B52R:G -> B51R:C: adjacent_3p downward } 0 20 {B52R:G -> B53R:C: adjacent_5p upward } 0 21 {B53R:C -> B52R:G: adjacent_3p downward } 0 22 {B53R:C -> B54R:G: adjacent_5p upward } 0 23 {B54R:G -> B53R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A17R:G 0 1 A18R:C 0 2 A19R:G 0 3 A20R:C 0 4 B50R:G 0 5 B51R:C 0 6 B52R:G 0 7 B53R:C 0 [Edges] 0 {A17R:G -> A18R:C: adjacent_5p upward } 0 1 {A18R:C -> A17R:G: adjacent_3p downward } 0 2 {A17R:G -> B53R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B53R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A18R:C -> A19R:G: adjacent_5p upward } 0 5 {A19R:G -> A18R:C: adjacent_3p downward } 0 6 {A18R:C -> B52R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B52R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A19R:G -> A20R:C: adjacent_5p upward } 0 9 {A20R:C -> A19R:G: adjacent_3p downward } 0 10 {A19R:G -> B51R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B51R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A19R:G -> B52R:G: outward } 0 13 {B52R:G -> A19R:G: outward } 0 14 {A20R:C -> B50R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B50R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B50R:G -> B51R:C: adjacent_5p upward } 0 17 {B51R:C -> B50R:G: adjacent_3p downward } 0 18 {B51R:C -> B52R:G: adjacent_5p upward } 0 19 {B52R:G -> B51R:C: adjacent_3p downward } 0 20 {B52R:G -> B53R:C: adjacent_5p upward } 0 21 {B53R:C -> B52R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A18R:C 0 1 A19R:G 0 2 A20R:C 0 3 A21R:A 0 4 B49R:A 0 5 B50R:G 0 6 B51R:C 0 7 B52R:G 0 [Edges] 0 {A18R:C -> A19R:G: adjacent_5p upward } 0 1 {A19R:G -> A18R:C: adjacent_3p downward } 0 2 {A18R:C -> B52R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B52R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A19R:G -> A20R:C: adjacent_5p upward } 0 5 {A20R:C -> A19R:G: adjacent_3p downward } 0 6 {A19R:G -> B51R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B51R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A19R:G -> B52R:G: outward } 0 9 {B52R:G -> A19R:G: outward } 0 10 {A20R:C -> A21R:A: adjacent_5p } 0 11 {A21R:A -> A20R:C: adjacent_3p } 0 12 {A20R:C -> B50R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B50R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A21R:A -> B49R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 15 {B49R:A -> A21R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 16 {B49R:A -> B50R:G: adjacent_5p } 0 17 {B50R:G -> B49R:A: adjacent_3p } 0 18 {B50R:G -> B51R:C: adjacent_5p upward } 0 19 {B51R:C -> B50R:G: adjacent_3p downward } 0 20 {B51R:C -> B52R:G: adjacent_5p upward } 0 21 {B52R:G -> B51R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A22R:C 0 1 A23R:G 0 2 A24R:G 0 3 A25R:C 0 4 B44R:G 0 5 B45R:C 0 6 B46R:U 0 7 B47R:G 0 [Edges] 0 {A22R:C -> A23R:G: adjacent_5p } 0 1 {A23R:G -> A22R:C: adjacent_3p } 0 2 {A22R:C -> B47R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B47R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A23R:G -> A24R:G: adjacent_5p upward } 0 5 {A24R:G -> A23R:G: adjacent_3p downward } 0 6 {A23R:G -> B46R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B46R:U -> A23R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A23R:G -> B47R:G: outward } 0 9 {B47R:G -> A23R:G: outward } 0 10 {A24R:G -> A25R:C: adjacent_5p upward } 0 11 {A25R:C -> A24R:G: adjacent_3p downward } 0 12 {A24R:G -> B45R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B45R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A25R:C -> B44R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B44R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B44R:G -> B45R:C: adjacent_5p upward } 0 17 {B45R:C -> B44R:G: adjacent_3p downward } 0 18 {B45R:C -> B46R:U: adjacent_5p upward } 0 19 {B46R:U -> B45R:C: adjacent_3p downward } 0 20 {B46R:U -> B47R:G: adjacent_5p } 0 21 {B47R:G -> B46R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A23R:G 0 1 A24R:G 0 2 A25R:C 0 3 A26R:A 0 4 B43R:U 0 5 B44R:G 0 6 B45R:C 0 7 B46R:U 0 [Edges] 0 {A23R:G -> A24R:G: adjacent_5p upward } 0 1 {A24R:G -> A23R:G: adjacent_3p downward } 0 2 {A23R:G -> B46R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B46R:U -> A23R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A24R:G -> A25R:C: adjacent_5p upward } 0 5 {A25R:C -> A24R:G: adjacent_3p downward } 0 6 {A24R:G -> B45R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B45R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A25R:C -> A26R:A: adjacent_5p } 0 9 {A26R:A -> A25R:C: adjacent_3p } 0 10 {A25R:C -> B44R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B44R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A26R:A -> B43R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B43R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A26R:A -> B44R:G: outward } 0 15 {B44R:G -> A26R:A: outward } 0 16 {B43R:U -> B44R:G: adjacent_5p } 0 17 {B44R:G -> B43R:U: adjacent_3p } 0 18 {B44R:G -> B45R:C: adjacent_5p upward } 0 19 {B45R:C -> B44R:G: adjacent_3p downward } 0 20 {B45R:C -> B46R:U: adjacent_5p upward } 0 21 {B46R:U -> B45R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A24R:G 0 1 A25R:C 0 2 A26R:A 0 3 A27R:A 0 4 B42R:U 0 5 B43R:U 0 6 B44R:G 0 7 B45R:C 0 [Edges] 0 {A24R:G -> A25R:C: adjacent_5p upward } 0 1 {A25R:C -> A24R:G: adjacent_3p downward } 0 2 {A24R:G -> B45R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B45R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A25R:C -> A26R:A: adjacent_5p } 0 5 {A26R:A -> A25R:C: adjacent_3p } 0 6 {A25R:C -> B44R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B44R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A26R:A -> A27R:A: adjacent_5p upward } 0 9 {A27R:A -> A26R:A: adjacent_3p downward } 0 10 {A26R:A -> B43R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B43R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A26R:A -> B44R:G: outward } 0 13 {B44R:G -> A26R:A: outward } 0 14 {A27R:A -> B42R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B42R:U -> A27R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B42R:U -> B43R:U: adjacent_5p upward } 0 17 {B43R:U -> B42R:U: adjacent_3p downward } 0 18 {B43R:U -> B44R:G: adjacent_5p } 0 19 {B44R:G -> B43R:U: adjacent_3p } 0 20 {B44R:G -> B45R:C: adjacent_5p upward } 0 21 {B45R:C -> B44R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A25R:C 0 1 A26R:A 0 2 A27R:A 0 3 A28R:G 0 4 B41R:C 0 5 B42R:U 0 6 B43R:U 0 7 B44R:G 0 [Edges] 0 {A25R:C -> A26R:A: adjacent_5p } 0 1 {A26R:A -> A25R:C: adjacent_3p } 0 2 {A25R:C -> B44R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B44R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A26R:A -> A27R:A: adjacent_5p upward } 0 5 {A27R:A -> A26R:A: adjacent_3p downward } 0 6 {A26R:A -> B43R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B43R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A26R:A -> B44R:G: outward } 0 9 {B44R:G -> A26R:A: outward } 0 10 {A27R:A -> A28R:G: adjacent_5p upward } 0 11 {A28R:G -> A27R:A: adjacent_3p downward } 0 12 {A27R:A -> B42R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B42R:U -> A27R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A28R:G -> B41R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B41R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B41R:C -> B42R:U: adjacent_5p } 0 17 {B42R:U -> B41R:C: adjacent_3p } 0 18 {B42R:U -> B43R:U: adjacent_5p upward } 0 19 {B43R:U -> B42R:U: adjacent_3p downward } 0 20 {B43R:U -> B44R:G: adjacent_5p } 0 21 {B44R:G -> B43R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A26R:A 0 1 A27R:A 0 2 A28R:G 0 3 A29R:A 0 4 B40R:G 0 5 B41R:C 0 6 B42R:U 0 7 B43R:U 0 [Edges] 0 {A26R:A -> A27R:A: adjacent_5p upward } 0 1 {A27R:A -> A26R:A: adjacent_3p downward } 0 2 {A26R:A -> B43R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B43R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A27R:A -> A28R:G: adjacent_5p upward } 0 5 {A28R:G -> A27R:A: adjacent_3p downward } 0 6 {A27R:A -> B42R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B42R:U -> A27R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A28R:G -> A29R:A: adjacent_5p upward } 0 9 {A29R:A -> A28R:G: adjacent_3p downward } 0 10 {A28R:G -> B41R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B41R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A29R:A -> B40R:G: pairing antiparallel cis VIII Ww/Ww } 0 13 {B40R:G -> A29R:A: pairing antiparallel cis VIII Ww/Ww } 0 14 {B40R:G -> B41R:C: adjacent_5p upward } 0 15 {B41R:C -> B40R:G: adjacent_3p downward } 0 16 {B41R:C -> B42R:U: adjacent_5p } 0 17 {B42R:U -> B41R:C: adjacent_3p } 0 18 {B42R:U -> B43R:U: adjacent_5p upward } 0 19 {B43R:U -> B42R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 5R:C 0 1 6R:U 0 2 7R:U 0 3 8R:G 0 4 19R:U 0 5 20R:G 0 6 21R:A 0 7 22R:G 0 [Edges] 0 {5R:C -> 6R:U: adjacent_5p } 0 1 {6R:U -> 5R:C: adjacent_3p } 0 2 {5R:C -> 22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {22R:G -> 5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {6R:U -> 7R:U: adjacent_5p upward } 0 5 {7R:U -> 6R:U: adjacent_3p downward } 0 6 {6R:U -> 21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {21R:A -> 6R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {7R:U -> 8R:G: adjacent_5p } 0 9 {8R:G -> 7R:U: adjacent_3p } 0 10 {7R:U -> 20R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {20R:G -> 7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {8R:G -> 19R:U: pairing antiparallel trans one_hbond Hw/Ww } 0 13 {19R:U -> 8R:G: pairing antiparallel trans one_hbond Ww/Hw } 0 14 {19R:U -> 20R:G: adjacent_5p upward } 0 15 {20R:G -> 19R:U: adjacent_3p downward } 0 16 {20R:G -> 21R:A: adjacent_5p upward } 0 17 {21R:A -> 20R:G: adjacent_3p downward } 0 18 {21R:A -> 22R:G: adjacent_5p upward } 0 19 {22R:G -> 21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 6R:U 0 1 7R:U 0 2 8R:G 0 3 9R:G 0 4 18R:A 0 5 19R:U 0 6 20R:G 0 7 21R:A 0 [Edges] 0 {6R:U -> 7R:U: adjacent_5p upward } 0 1 {7R:U -> 6R:U: adjacent_3p downward } 0 2 {6R:U -> 21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {21R:A -> 6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {7R:U -> 8R:G: adjacent_5p } 0 5 {8R:G -> 7R:U: adjacent_3p } 0 6 {7R:U -> 20R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {20R:G -> 7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {8R:G -> 9R:G: adjacent_5p upward } 0 9 {9R:G -> 8R:G: adjacent_3p downward } 0 10 {8R:G -> 19R:U: pairing antiparallel trans one_hbond Hw/Ww } 0 11 {19R:U -> 8R:G: pairing antiparallel trans one_hbond Ww/Hw } 0 12 {9R:G -> 18R:A: pairing antiparallel cis VIII Ww/Ww } 0 13 {18R:A -> 9R:G: pairing antiparallel cis VIII Ww/Ww } 0 14 {18R:A -> 19R:U: adjacent_5p upward } 0 15 {19R:U -> 18R:A: adjacent_3p downward } 0 16 {19R:U -> 20R:G: adjacent_5p upward } 0 17 {20R:G -> 19R:U: adjacent_3p downward } 0 18 {20R:G -> 21R:A: adjacent_5p upward } 0 19 {21R:A -> 20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 7R:U 0 1 8R:G 0 2 9R:G 0 3 10R:U 0 4 17R:A 0 5 18R:A 0 6 19R:U 0 7 20R:G 0 [Edges] 0 {7R:U -> 8R:G: adjacent_5p } 0 1 {8R:G -> 7R:U: adjacent_3p } 0 2 {7R:U -> 20R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {20R:G -> 7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {8R:G -> 9R:G: adjacent_5p upward } 0 5 {9R:G -> 8R:G: adjacent_3p downward } 0 6 {8R:G -> 19R:U: pairing antiparallel trans one_hbond Hw/Ww } 0 7 {19R:U -> 8R:G: pairing antiparallel trans one_hbond Ww/Hw } 0 8 {9R:G -> 10R:U: adjacent_5p upward } 0 9 {10R:U -> 9R:G: adjacent_3p downward } 0 10 {9R:G -> 18R:A: pairing antiparallel cis VIII Ww/Ww } 0 11 {18R:A -> 9R:G: pairing antiparallel cis VIII Ww/Ww } 0 12 {10R:U -> 17R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {17R:A -> 10R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {17R:A -> 18R:A: adjacent_5p upward } 0 15 {18R:A -> 17R:A: adjacent_3p downward } 0 16 {18R:A -> 19R:U: adjacent_5p upward } 0 17 {19R:U -> 18R:A: adjacent_3p downward } 0 18 {19R:U -> 20R:G: adjacent_5p upward } 0 19 {20R:G -> 19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 8R:G 0 1 9R:G 0 2 10R:U 0 3 11R:U 0 4 16R:U 0 5 17R:A 0 6 18R:A 0 7 19R:U 0 [Edges] 0 {8R:G -> 9R:G: adjacent_5p upward } 0 1 {9R:G -> 8R:G: adjacent_3p downward } 0 2 {8R:G -> 19R:U: pairing antiparallel trans one_hbond Hw/Ww } 0 3 {19R:U -> 8R:G: pairing antiparallel trans one_hbond Ww/Hw } 0 4 {9R:G -> 10R:U: adjacent_5p upward } 0 5 {10R:U -> 9R:G: adjacent_3p downward } 0 6 {9R:G -> 18R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {18R:A -> 9R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {10R:U -> 11R:U: adjacent_5p upward } 0 9 {11R:U -> 10R:U: adjacent_3p downward } 0 10 {10R:U -> 17R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {17R:A -> 10R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {11R:U -> 16R:U: pairing antiparallel cis XVI Ws/Ww } 0 13 {16R:U -> 11R:U: pairing antiparallel cis XVI Ww/Ws } 0 14 {16R:U -> 17R:A: adjacent_5p } 0 15 {17R:A -> 16R:U: adjacent_3p } 0 16 {17R:A -> 18R:A: adjacent_5p upward } 0 17 {18R:A -> 17R:A: adjacent_3p downward } 0 18 {18R:A -> 19R:U: adjacent_5p upward } 0 19 {19R:U -> 18R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:A 0 3 A6R:C 0 4 A17R:G 0 5 A18R:U 0 6 A19R:C 0 7 A20R:A 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p } 0 1 {A4R:G -> A3R:U: adjacent_3p } 0 2 {A3R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A20R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A19R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> A20R:A: outward } 0 9 {A20R:A -> A4R:G: outward } 0 10 {A5R:A -> A6R:C: adjacent_5p upward } 0 11 {A6R:C -> A5R:A: adjacent_3p downward } 0 12 {A5R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A18R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A6R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {A17R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {A17R:G -> A18R:U: adjacent_5p upward } 0 17 {A18R:U -> A17R:G: adjacent_3p downward } 0 18 {A18R:U -> A19R:C: adjacent_5p } 0 19 {A19R:C -> A18R:U: adjacent_3p } 0 20 {A19R:C -> A20R:A: adjacent_5p } 0 21 {A20R:A -> A19R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:C 0 3 A7R:C 0 4 A16R:G 0 5 A17R:G 0 6 A18R:U 0 7 A19R:C 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> A18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A18R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:C -> A7R:C: adjacent_5p } 0 9 {A7R:C -> A6R:C: adjacent_3p } 0 10 {A6R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A16R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A16R:G -> A17R:G: adjacent_5p upward } 0 15 {A17R:G -> A16R:G: adjacent_3p downward } 0 16 {A17R:G -> A18R:U: adjacent_5p upward } 0 17 {A18R:U -> A17R:G: adjacent_3p downward } 0 18 {A18R:U -> A19R:C: adjacent_5p } 0 19 {A19R:C -> A18R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:C 0 2 A11R:U 0 3 A12R:A 0 4 A31R:U 0 5 A32R:A 0 6 A33R:G 0 7 A34R:C 0 [Edges] 0 {A9R:G -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A34R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:C -> A11R:U: adjacent_5p } 0 5 {A11R:U -> A10R:C: adjacent_3p } 0 6 {A10R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A33R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A11R:U -> A12R:A: adjacent_5p } 0 9 {A12R:A -> A11R:U: adjacent_3p } 0 10 {A11R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A32R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A12R:A -> A31R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {A31R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A12R:A -> A32R:A: outward } 0 15 {A32R:A -> A12R:A: outward } 0 16 {A31R:U -> A32R:A: adjacent_5p } 0 17 {A32R:A -> A31R:U: adjacent_3p } 0 18 {A32R:A -> A33R:G: adjacent_5p upward } 0 19 {A33R:G -> A32R:A: adjacent_3p downward } 0 20 {A33R:G -> A34R:C: adjacent_5p upward } 0 21 {A34R:C -> A33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:C 0 1 A11R:U 0 2 A12R:A 0 3 A13R:U 0 4 A30R:A 0 5 A31R:U 0 6 A32R:A 0 7 A33R:G 0 [Edges] 0 {A10R:C -> A11R:U: adjacent_5p } 0 1 {A11R:U -> A10R:C: adjacent_3p } 0 2 {A10R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A33R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:U -> A12R:A: adjacent_5p } 0 5 {A12R:A -> A11R:U: adjacent_3p } 0 6 {A11R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A32R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A12R:A -> A13R:U: adjacent_5p upward } 0 9 {A13R:U -> A12R:A: adjacent_3p downward } 0 10 {A12R:A -> A31R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {A31R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A12R:A -> A32R:A: outward } 0 13 {A32R:A -> A12R:A: outward } 0 14 {A13R:U -> A30R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {A30R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {A30R:A -> A31R:U: adjacent_5p upward } 0 17 {A31R:U -> A30R:A: adjacent_3p downward } 0 18 {A31R:U -> A32R:A: adjacent_5p } 0 19 {A32R:A -> A31R:U: adjacent_3p } 0 20 {A32R:A -> A33R:G: adjacent_5p upward } 0 21 {A33R:G -> A32R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:A 0 2 A13R:U 0 3 A14R:G 0 4 A29R:C 0 5 A30R:A 0 6 A31R:U 0 7 A32R:A 0 [Edges] 0 {A11R:U -> A12R:A: adjacent_5p } 0 1 {A12R:A -> A11R:U: adjacent_3p } 0 2 {A11R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A32R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A12R:A -> A13R:U: adjacent_5p upward } 0 5 {A13R:U -> A12R:A: adjacent_3p downward } 0 6 {A12R:A -> A31R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A31R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A12R:A -> A32R:A: outward } 0 9 {A32R:A -> A12R:A: outward } 0 10 {A13R:U -> A14R:G: adjacent_5p } 0 11 {A14R:G -> A13R:U: adjacent_3p } 0 12 {A13R:U -> A30R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {A30R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A14R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A29R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A14R:G -> A30R:A: outward } 0 17 {A30R:A -> A14R:G: outward } 0 18 {A29R:C -> A30R:A: adjacent_5p } 0 19 {A30R:A -> A29R:C: adjacent_3p } 0 20 {A30R:A -> A31R:U: adjacent_5p upward } 0 21 {A31R:U -> A30R:A: adjacent_3p downward } 0 22 {A31R:U -> A32R:A: adjacent_5p } 0 23 {A32R:A -> A31R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A12R:A 0 1 A13R:U 0 2 A14R:G 0 3 A15R:A 0 4 A28R:U 0 5 A29R:C 0 6 A30R:A 0 7 A31R:U 0 [Edges] 0 {A12R:A -> A13R:U: adjacent_5p upward } 0 1 {A13R:U -> A12R:A: adjacent_3p downward } 0 2 {A12R:A -> A31R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A31R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A13R:U -> A14R:G: adjacent_5p } 0 5 {A14R:G -> A13R:U: adjacent_3p } 0 6 {A13R:U -> A30R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A30R:A -> A13R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A14R:G -> A15R:A: adjacent_5p upward } 0 9 {A15R:A -> A14R:G: adjacent_3p downward } 0 10 {A14R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A29R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:G -> A30R:A: outward } 0 13 {A30R:A -> A14R:G: outward } 0 14 {A15R:A -> A28R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A28R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A28R:U -> A29R:C: adjacent_5p } 0 17 {A29R:C -> A28R:U: adjacent_3p } 0 18 {A29R:C -> A30R:A: adjacent_5p } 0 19 {A30R:A -> A29R:C: adjacent_3p } 0 20 {A30R:A -> A31R:U: adjacent_5p upward } 0 21 {A31R:U -> A30R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A14R:G 0 1 A15R:A 0 2 A16R:G 0 3 A17R:G 0 4 A26R:C 0 5 A27R:G 0 6 A28R:U 0 7 A29R:C 0 [Edges] 0 {A14R:G -> A15R:A: adjacent_5p upward } 0 1 {A15R:A -> A14R:G: adjacent_3p downward } 0 2 {A14R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A29R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A15R:A -> A16R:G: adjacent_5p upward } 0 5 {A16R:G -> A15R:A: adjacent_3p downward } 0 6 {A15R:A -> A28R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A28R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A16R:G -> A17R:G: adjacent_5p upward } 0 9 {A17R:G -> A16R:G: adjacent_3p downward } 0 10 {A17R:G -> A26R:C: pairing antiparallel cis one_hbond 125 Sw/Ww } 0 11 {A26R:C -> A17R:G: pairing antiparallel cis one_hbond 125 Ww/Sw } 0 12 {A26R:C -> A27R:G: adjacent_5p } 0 13 {A27R:G -> A26R:C: adjacent_3p } 0 14 {A27R:G -> A28R:U: adjacent_5p } 0 15 {A28R:U -> A27R:G: adjacent_3p } 0 16 {A28R:U -> A29R:C: adjacent_5p } 0 17 {A29R:C -> A28R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . MOLECULE: [GraphModel] [Vertices] 0 1R:U 0 1 2R:C 0 2 3R:C 0 3 4R:G 0 4 69R:C 0 5 70R:G 0 6 71R:G 0 7 72R:A 0 [Edges] 0 {1R:U -> 2R:C: adjacent_5p upward } 0 1 {2R:C -> 1R:U: adjacent_3p downward } 0 2 {1R:U -> 72R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {72R:A -> 1R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {2R:C -> 3R:C: adjacent_5p } 0 5 {3R:C -> 2R:C: adjacent_3p } 0 6 {2R:C -> 71R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {71R:G -> 2R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {3R:C -> 4R:G: adjacent_5p upward } 0 9 {4R:G -> 3R:C: adjacent_3p downward } 0 10 {3R:C -> 70R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {70R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {4R:G -> 69R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {69R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {4R:G -> 70R:G: outward } 0 15 {70R:G -> 4R:G: outward } 0 16 {69R:C -> 70R:G: adjacent_5p } 0 17 {70R:G -> 69R:C: adjacent_3p } 0 18 {70R:G -> 71R:G: adjacent_5p upward } 0 19 {71R:G -> 70R:G: adjacent_3p downward } 0 20 {71R:G -> 72R:A: adjacent_5p upward } 0 21 {72R:A -> 71R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 2R:C 0 1 3R:C 0 2 4R:G 0 3 5R:U 0 4 68R:G 0 5 69R:C 0 6 70R:G 0 7 71R:G 0 [Edges] 0 {2R:C -> 3R:C: adjacent_5p } 0 1 {3R:C -> 2R:C: adjacent_3p } 0 2 {2R:C -> 71R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {71R:G -> 2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {3R:C -> 4R:G: adjacent_5p upward } 0 5 {4R:G -> 3R:C: adjacent_3p downward } 0 6 {3R:C -> 70R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {70R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:G -> 5R:U: adjacent_5p upward } 0 9 {5R:U -> 4R:G: adjacent_3p downward } 0 10 {4R:G -> 69R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {69R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {4R:G -> 70R:G: outward } 0 13 {70R:G -> 4R:G: outward } 0 14 {5R:U -> 68R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {68R:G -> 5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {68R:G -> 69R:C: adjacent_5p upward } 0 17 {69R:C -> 68R:G: adjacent_3p downward } 0 18 {69R:C -> 70R:G: adjacent_5p } 0 19 {70R:G -> 69R:C: adjacent_3p } 0 20 {70R:G -> 71R:G: adjacent_5p upward } 0 21 {71R:G -> 70R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 3R:C 0 1 4R:G 0 2 5R:U 0 3 6R:G 0 4 67R:C 0 5 68R:G 0 6 69R:C 0 7 70R:G 0 [Edges] 0 {3R:C -> 4R:G: adjacent_5p upward } 0 1 {4R:G -> 3R:C: adjacent_3p downward } 0 2 {3R:C -> 70R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {70R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:G -> 5R:U: adjacent_5p upward } 0 5 {5R:U -> 4R:G: adjacent_3p downward } 0 6 {4R:G -> 69R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {69R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {4R:G -> 70R:G: outward } 0 9 {70R:G -> 4R:G: outward } 0 10 {5R:U -> 6R:G: adjacent_5p } 0 11 {6R:G -> 5R:U: adjacent_3p } 0 12 {5R:U -> 68R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {68R:G -> 5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {6R:G -> 67R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {67R:C -> 6R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {6R:G -> 68R:G: outward } 0 17 {68R:G -> 6R:G: outward } 0 18 {67R:C -> 68R:G: adjacent_5p } 0 19 {68R:G -> 67R:C: adjacent_3p } 0 20 {68R:G -> 69R:C: adjacent_5p upward } 0 21 {69R:C -> 68R:G: adjacent_3p downward } 0 22 {69R:C -> 70R:G: adjacent_5p } 0 23 {70R:G -> 69R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 4R:G 0 1 5R:U 0 2 6R:G 0 3 7R:A 0 4 66R:U 0 5 67R:C 0 6 68R:G 0 7 69R:C 0 [Edges] 0 {4R:G -> 5R:U: adjacent_5p upward } 0 1 {5R:U -> 4R:G: adjacent_3p downward } 0 2 {4R:G -> 69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {69R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {5R:U -> 6R:G: adjacent_5p } 0 5 {6R:G -> 5R:U: adjacent_3p } 0 6 {5R:U -> 68R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {68R:G -> 5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {6R:G -> 7R:A: adjacent_5p upward } 0 9 {7R:A -> 6R:G: adjacent_3p downward } 0 10 {6R:G -> 67R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {67R:C -> 6R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {6R:G -> 68R:G: outward } 0 13 {68R:G -> 6R:G: outward } 0 14 {7R:A -> 66R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {66R:U -> 7R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {66R:U -> 67R:C: adjacent_5p upward } 0 17 {67R:C -> 66R:U: adjacent_3p downward } 0 18 {67R:C -> 68R:G: adjacent_5p } 0 19 {68R:G -> 67R:C: adjacent_3p } 0 20 {68R:G -> 69R:C: adjacent_5p upward } 0 21 {69R:C -> 68R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 26R:G 0 1 27R:G 0 2 28R:G 0 3 29R:C 0 4 41R:G 0 5 42R:C 0 6 43R:C 0 7 44R:A 0 [Edges] 0 {26R:G -> 27R:G: adjacent_5p upward } 0 1 {27R:G -> 26R:G: adjacent_3p downward } 0 2 {26R:G -> 44R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {44R:A -> 26R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {27R:G -> 28R:G: adjacent_5p upward } 0 5 {28R:G -> 27R:G: adjacent_3p downward } 0 6 {27R:G -> 43R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {43R:C -> 27R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {27R:G -> 44R:A: outward } 0 9 {44R:A -> 27R:G: outward } 0 10 {28R:G -> 29R:C: adjacent_5p upward } 0 11 {29R:C -> 28R:G: adjacent_3p downward } 0 12 {28R:G -> 42R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {42R:C -> 28R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {29R:C -> 41R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {41R:G -> 29R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {41R:G -> 42R:C: adjacent_5p upward } 0 17 {42R:C -> 41R:G: adjacent_3p downward } 0 18 {42R:C -> 43R:C: adjacent_5p } 0 19 {43R:C -> 42R:C: adjacent_3p } 0 20 {43R:C -> 44R:A: adjacent_5p upward } 0 21 {44R:A -> 43R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 27R:G 0 1 28R:G 0 2 29R:C 0 3 30R:G 0 4 40R:U 0 5 41R:G 0 6 42R:C 0 7 43R:C 0 [Edges] 0 {27R:G -> 28R:G: adjacent_5p upward } 0 1 {28R:G -> 27R:G: adjacent_3p downward } 0 2 {27R:G -> 43R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {43R:C -> 27R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {28R:G -> 29R:C: adjacent_5p upward } 0 5 {29R:C -> 28R:G: adjacent_3p downward } 0 6 {28R:G -> 42R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {42R:C -> 28R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {29R:C -> 30R:G: adjacent_5p } 0 9 {30R:G -> 29R:C: adjacent_3p } 0 10 {29R:C -> 41R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {41R:G -> 29R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {30R:G -> 40R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {40R:U -> 30R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {30R:G -> 41R:G: outward } 0 15 {41R:G -> 30R:G: outward } 0 16 {40R:U -> 41R:G: adjacent_5p } 0 17 {41R:G -> 40R:U: adjacent_3p } 0 18 {41R:G -> 42R:C: adjacent_5p upward } 0 19 {42R:C -> 41R:G: adjacent_3p downward } 0 20 {42R:C -> 43R:C: adjacent_5p } 0 21 {43R:C -> 42R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 28R:G 0 1 29R:C 0 2 30R:G 0 3 31R:C 0 4 39R:G 0 5 40R:U 0 6 41R:G 0 7 42R:C 0 [Edges] 0 {28R:G -> 29R:C: adjacent_5p upward } 0 1 {29R:C -> 28R:G: adjacent_3p downward } 0 2 {28R:G -> 42R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {42R:C -> 28R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {29R:C -> 30R:G: adjacent_5p } 0 5 {30R:G -> 29R:C: adjacent_3p } 0 6 {29R:C -> 41R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {41R:G -> 29R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {30R:G -> 31R:C: adjacent_5p upward } 0 9 {31R:C -> 30R:G: adjacent_3p downward } 0 10 {30R:G -> 40R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {40R:U -> 30R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {30R:G -> 41R:G: outward } 0 13 {41R:G -> 30R:G: outward } 0 14 {31R:C -> 39R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {39R:G -> 31R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {39R:G -> 40R:U: adjacent_5p upward } 0 17 {40R:U -> 39R:G: adjacent_3p downward } 0 18 {40R:U -> 41R:G: adjacent_5p } 0 19 {41R:G -> 40R:U: adjacent_3p } 0 20 {41R:G -> 42R:C: adjacent_5p upward } 0 21 {42R:C -> 41R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 50R:G 0 1 51R:G 0 2 52R:G 0 3 53R:G 0 4 61R:C 0 5 62R:C 0 6 63R:C 0 7 64R:C 0 [Edges] 0 {50R:G -> 51R:G: adjacent_5p upward } 0 1 {51R:G -> 50R:G: adjacent_3p downward } 0 2 {50R:G -> 64R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {64R:C -> 50R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {51R:G -> 52R:G: adjacent_5p upward } 0 5 {52R:G -> 51R:G: adjacent_3p downward } 0 6 {51R:G -> 63R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {63R:C -> 51R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {52R:G -> 53R:G: adjacent_5p upward } 0 9 {53R:G -> 52R:G: adjacent_3p downward } 0 10 {52R:G -> 62R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {62R:C -> 52R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {53R:G -> 61R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {61R:C -> 53R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {61R:C -> 62R:C: adjacent_5p } 0 15 {62R:C -> 61R:C: adjacent_3p } 0 16 {62R:C -> 63R:C: adjacent_5p } 0 17 {63R:C -> 62R:C: adjacent_3p } 0 18 {63R:C -> 64R:C: adjacent_5p upward } 0 19 {64R:C -> 63R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:U 0 1 A3R:A 0 2 A4R:U 0 3 A5R:G 0 4 B12R:U 0 5 B13R:G 0 6 B14R:U 0 7 B15R:A 0 [Edges] 0 {A2R:U -> A3R:A: adjacent_5p } 0 1 {A3R:A -> A2R:U: adjacent_3p } 0 2 {A2R:U -> B15R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B15R:A -> A2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:A -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> B14R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B14R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A3R:A -> B15R:A: outward } 0 9 {B15R:A -> A3R:A: outward } 0 10 {A4R:U -> A5R:G: adjacent_5p } 0 11 {A5R:G -> A4R:U: adjacent_3p } 0 12 {A4R:U -> B13R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {B13R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A5R:G -> B12R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {B12R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A5R:G -> B13R:G: outward } 0 17 {B13R:G -> A5R:G: outward } 0 18 {B12R:U -> B13R:G: adjacent_5p } 0 19 {B13R:G -> B12R:U: adjacent_3p } 0 20 {B13R:G -> B14R:U: adjacent_5p upward } 0 21 {B14R:U -> B13R:G: adjacent_3p downward } 0 22 {B14R:U -> B15R:A: adjacent_5p upward } 0 23 {B15R:A -> B14R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:U 0 2 A5R:G 0 3 A6R:U 0 4 B11R:A 0 5 B12R:U 0 6 B13R:G 0 7 B14R:U 0 [Edges] 0 {A3R:A -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> B14R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B14R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:U -> A5R:G: adjacent_5p } 0 5 {A5R:G -> A4R:U: adjacent_3p } 0 6 {A4R:U -> B13R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B13R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A5R:G -> A6R:U: adjacent_5p upward } 0 9 {A6R:U -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> B12R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B12R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A5R:G -> B13R:G: outward } 0 13 {B13R:G -> A5R:G: outward } 0 14 {A6R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B11R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B11R:A -> B12R:U: adjacent_5p upward } 0 17 {B12R:U -> B11R:A: adjacent_3p downward } 0 18 {B12R:U -> B13R:G: adjacent_5p } 0 19 {B13R:G -> B12R:U: adjacent_3p } 0 20 {B13R:G -> B14R:U: adjacent_5p upward } 0 21 {B14R:U -> B13R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:G 0 2 A6R:U 0 3 A7R:A 0 4 B10R:U 0 5 B11R:A 0 6 B12R:U 0 7 B13R:G 0 [Edges] 0 {A4R:U -> A5R:G: adjacent_5p } 0 1 {A5R:G -> A4R:U: adjacent_3p } 0 2 {A4R:U -> B13R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B13R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A5R:G -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> B12R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B12R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A5R:G -> B13R:G: outward } 0 9 {B13R:G -> A5R:G: outward } 0 10 {A6R:U -> A7R:A: adjacent_5p } 0 11 {A7R:A -> A6R:U: adjacent_3p } 0 12 {A6R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B11R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A7R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B10R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A7R:A -> B11R:A: outward } 0 17 {B11R:A -> A7R:A: outward } 0 18 {B10R:U -> B11R:A: adjacent_5p upward } 0 19 {B11R:A -> B10R:U: adjacent_3p downward } 0 20 {B11R:A -> B12R:U: adjacent_5p upward } 0 21 {B12R:U -> B11R:A: adjacent_3p downward } 0 22 {B12R:U -> B13R:G: adjacent_5p } 0 23 {B13R:G -> B12R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:G 0 2 A6R:U 0 3 A7R:A 0 4 B12R:U 0 5 B13R:G 0 6 B14R:U 0 7 B15R:A 0 [Edges] 0 {A4R:U -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:U: adjacent_3p downward } 0 2 {A4R:U -> B15R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B15R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:G -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> B14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B14R:U -> A5R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A5R:G -> B15R:A: outward } 0 9 {B15R:A -> A5R:G: outward } 0 10 {A6R:U -> A7R:A: adjacent_5p } 0 11 {A7R:A -> A6R:U: adjacent_3p } 0 12 {A6R:U -> B13R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {B13R:G -> A6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A7R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B12R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A7R:A -> B13R:G: outward } 0 17 {B13R:G -> A7R:A: outward } 0 18 {B12R:U -> B13R:G: adjacent_5p } 0 19 {B13R:G -> B12R:U: adjacent_3p } 0 20 {B13R:G -> B14R:U: adjacent_5p upward } 0 21 {B14R:U -> B13R:G: adjacent_3p downward } 0 22 {B14R:U -> B15R:A: adjacent_5p } 0 23 {B15R:A -> B14R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A2R:U 0 1 A3R:C 0 2 A4R:C 0 3 A5R:C 0 4 B20R:G 0 5 B21R:G 0 6 B22R:G 0 7 B23R:A 0 [Edges] 0 {A2R:U -> A3R:C: adjacent_5p upward } 0 1 {A3R:C -> A2R:U: adjacent_3p downward } 0 2 {A2R:U -> B23R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B23R:A -> A2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:C -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:C: adjacent_3p downward } 0 6 {A3R:C -> B22R:G: pairing antiparallel cis 130 Ww/Ww } 0 7 {B22R:G -> A3R:C: pairing antiparallel cis 130 Ww/Ww } 0 8 {A4R:C -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B21R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B20R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B20R:G -> B21R:G: adjacent_5p upward } 0 15 {B21R:G -> B20R:G: adjacent_3p downward } 0 16 {B21R:G -> B22R:G: adjacent_5p upward } 0 17 {B22R:G -> B21R:G: adjacent_3p downward } 0 18 {B22R:G -> B23R:A: adjacent_5p upward } 0 19 {B23R:A -> B22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:C 0 2 A5R:C 0 3 A6R:C 0 4 B19R:G 0 5 B20R:G 0 6 B21R:G 0 7 B22R:G 0 [Edges] 0 {A3R:C -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B22R:G: pairing antiparallel cis 130 Ww/Ww } 0 3 {B22R:G -> A3R:C: pairing antiparallel cis 130 Ww/Ww } 0 4 {A4R:C -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B21R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:C -> A6R:C: adjacent_5p } 0 9 {A6R:C -> A5R:C: adjacent_3p } 0 10 {A5R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B20R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B19R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B19R:G -> B20R:G: adjacent_5p upward } 0 15 {B20R:G -> B19R:G: adjacent_3p downward } 0 16 {B20R:G -> B21R:G: adjacent_5p upward } 0 17 {B21R:G -> B20R:G: adjacent_3p downward } 0 18 {B21R:G -> B22R:G: adjacent_5p upward } 0 19 {B22R:G -> B21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:C 0 2 A6R:C 0 3 A7R:C 0 4 B18R:G 0 5 B19R:G 0 6 B20R:G 0 7 B21R:G 0 [Edges] 0 {A4R:C -> A5R:C: adjacent_5p upward } 0 1 {A5R:C -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B21R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:C -> A6R:C: adjacent_5p } 0 5 {A6R:C -> A5R:C: adjacent_3p } 0 6 {A5R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B20R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:C -> A7R:C: adjacent_5p upward } 0 9 {A7R:C -> A6R:C: adjacent_3p downward } 0 10 {A6R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B19R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B18R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B18R:G -> B19R:G: adjacent_5p upward } 0 15 {B19R:G -> B18R:G: adjacent_3p downward } 0 16 {B19R:G -> B20R:G: adjacent_5p upward } 0 17 {B20R:G -> B19R:G: adjacent_3p downward } 0 18 {B20R:G -> B21R:G: adjacent_5p upward } 0 19 {B21R:G -> B20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:C 0 2 A7R:C 0 3 A8R:G 0 4 B17R:C 0 5 B18R:G 0 6 B19R:G 0 7 B20R:G 0 [Edges] 0 {A5R:C -> A6R:C: adjacent_5p } 0 1 {A6R:C -> A5R:C: adjacent_3p } 0 2 {A5R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B20R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:C -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:C: adjacent_3p downward } 0 6 {A6R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B19R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:C -> A8R:G: adjacent_5p upward } 0 9 {A8R:G -> A7R:C: adjacent_3p downward } 0 10 {A7R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B18R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:G -> B17R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 13 {B17R:C -> A8R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 14 {A8R:G -> B18R:G: outward } 0 15 {B18R:G -> A8R:G: outward } 0 16 {B17R:C -> B18R:G: adjacent_5p } 0 17 {B18R:G -> B17R:C: adjacent_3p } 0 18 {B18R:G -> B19R:G: adjacent_5p upward } 0 19 {B19R:G -> B18R:G: adjacent_3p downward } 0 20 {B19R:G -> B20R:G: adjacent_5p upward } 0 21 {B20R:G -> B19R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:C 0 2 A8R:G 0 3 A9R:U 0 4 B16R:G 0 5 B17R:C 0 6 B18R:G 0 7 B19R:G 0 [Edges] 0 {A6R:C -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:C: adjacent_3p downward } 0 2 {A6R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B19R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:C -> A8R:G: adjacent_5p upward } 0 5 {A8R:G -> A7R:C: adjacent_3p downward } 0 6 {A7R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B18R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:G -> A9R:U: adjacent_5p upward } 0 9 {A9R:U -> A8R:G: adjacent_3p downward } 0 10 {A8R:G -> B17R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 11 {B17R:C -> A8R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 12 {A8R:G -> B18R:G: outward } 0 13 {B18R:G -> A8R:G: outward } 0 14 {A9R:U -> B16R:G: pairing antiparallel cis Ww/Ww } 0 15 {B16R:G -> A9R:U: pairing antiparallel cis Ww/Ww } 0 16 {B16R:G -> B17R:C: adjacent_5p upward } 0 17 {B17R:C -> B16R:G: adjacent_3p downward } 0 18 {B17R:C -> B18R:G: adjacent_5p } 0 19 {B18R:G -> B17R:C: adjacent_3p } 0 20 {B18R:G -> B19R:G: adjacent_5p upward } 0 21 {B19R:G -> B18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:C 0 1 A8R:G 0 2 A9R:U 0 3 A10R:G 0 4 B15R:U 0 5 B16R:G 0 6 B17R:C 0 7 B18R:G 0 [Edges] 0 {A7R:C -> A8R:G: adjacent_5p upward } 0 1 {A8R:G -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B18R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:G -> A9R:U: adjacent_5p upward } 0 5 {A9R:U -> A8R:G: adjacent_3p downward } 0 6 {A8R:G -> B17R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 7 {B17R:C -> A8R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 8 {A8R:G -> B18R:G: outward } 0 9 {B18R:G -> A8R:G: outward } 0 10 {A9R:U -> A10R:G: adjacent_5p upward } 0 11 {A10R:G -> A9R:U: adjacent_3p downward } 0 12 {A9R:U -> B16R:G: pairing antiparallel cis Ww/Ww } 0 13 {B16R:G -> A9R:U: pairing antiparallel cis Ww/Ww } 0 14 {A10R:G -> B15R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {B15R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A10R:G -> B16R:G: outward } 0 17 {B16R:G -> A10R:G: outward } 0 18 {B15R:U -> B16R:G: adjacent_5p upward } 0 19 {B16R:G -> B15R:U: adjacent_3p downward } 0 20 {B16R:G -> B17R:C: adjacent_5p upward } 0 21 {B17R:C -> B16R:G: adjacent_3p downward } 0 22 {B17R:C -> B18R:G: adjacent_5p } 0 23 {B18R:G -> B17R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:U 0 2 A10R:G 0 3 A11R:C 0 4 B14R:G 0 5 B15R:U 0 6 B16R:G 0 7 B17R:C 0 [Edges] 0 {A8R:G -> A9R:U: adjacent_5p upward } 0 1 {A9R:U -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> B17R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 3 {B17R:C -> A8R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 4 {A9R:U -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:U: adjacent_3p downward } 0 6 {A9R:U -> B16R:G: pairing antiparallel cis Ww/Ww } 0 7 {B16R:G -> A9R:U: pairing antiparallel cis Ww/Ww } 0 8 {A10R:G -> A11R:C: adjacent_5p upward } 0 9 {A11R:C -> A10R:G: adjacent_3p downward } 0 10 {A10R:G -> B15R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B15R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A10R:G -> B16R:G: outward } 0 13 {B16R:G -> A10R:G: outward } 0 14 {A11R:C -> B14R:G: pairing antiparallel cis 130 Ww/Ww } 0 15 {B14R:G -> A11R:C: pairing antiparallel cis 130 Ww/Ww } 0 16 {B14R:G -> B15R:U: adjacent_5p upward } 0 17 {B15R:U -> B14R:G: adjacent_3p downward } 0 18 {B15R:U -> B16R:G: adjacent_5p upward } 0 19 {B16R:G -> B15R:U: adjacent_3p downward } 0 20 {B16R:G -> B17R:C: adjacent_5p upward } 0 21 {B17R:C -> B16R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A72R:G 0 1 A73R:A 0 2 A74R:U 0 3 A75R:G 0 4 B101R:A 0 5 B102R:G 0 6 B103R:U 0 7 B104R:A 0 [Edges] 0 {A72R:G -> A73R:A: adjacent_5p } 0 1 {A73R:A -> A72R:G: adjacent_3p } 0 2 {A72R:G -> B104R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {B104R:A -> A72R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {A73R:A -> A74R:U: adjacent_5p upward } 0 5 {A74R:U -> A73R:A: adjacent_3p downward } 0 6 {A73R:A -> B103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 7 {B103R:U -> A73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 8 {A73R:A -> B104R:A: outward } 0 9 {B104R:A -> A73R:A: outward } 0 10 {A74R:U -> A75R:G: adjacent_5p upward } 0 11 {A75R:G -> A74R:U: adjacent_3p downward } 0 12 {A74R:U -> B102R:G: pairing antiparallel trans 91 Bh/Ww } 0 13 {B102R:G -> A74R:U: pairing antiparallel trans 91 Ww/Bh } 0 14 {A75R:G -> B101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 15 {B101R:A -> A75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 16 {B101R:A -> B102R:G: adjacent_5p upward } 0 17 {B102R:G -> B101R:A: adjacent_3p downward } 0 18 {B102R:G -> B103R:U: adjacent_5p upward } 0 19 {B103R:U -> B102R:G: adjacent_3p downward } 0 20 {B103R:U -> B104R:A: adjacent_5p } 0 21 {B104R:A -> B103R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A73R:A 0 1 A74R:U 0 2 A75R:G 0 3 A76R:G 0 4 B100R:G 0 5 B101R:A 0 6 B102R:G 0 7 B103R:U 0 [Edges] 0 {A73R:A -> A74R:U: adjacent_5p upward } 0 1 {A74R:U -> A73R:A: adjacent_3p downward } 0 2 {A73R:A -> B103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {B103R:U -> A73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {A74R:U -> A75R:G: adjacent_5p upward } 0 5 {A75R:G -> A74R:U: adjacent_3p downward } 0 6 {A74R:U -> B102R:G: pairing antiparallel trans 91 Bh/Ww } 0 7 {B102R:G -> A74R:U: pairing antiparallel trans 91 Ww/Bh } 0 8 {A75R:G -> A76R:G: adjacent_5p upward } 0 9 {A76R:G -> A75R:G: adjacent_3p downward } 0 10 {A75R:G -> B101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {B101R:A -> A75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {A76R:G -> B100R:G: pairing antiparallel trans 115 Ww/Bh } 0 13 {B100R:G -> A76R:G: pairing antiparallel trans 115 Bh/Ww } 0 14 {B100R:G -> B101R:A: adjacent_5p upward } 0 15 {B101R:A -> B100R:G: adjacent_3p downward } 0 16 {B101R:A -> B102R:G: adjacent_5p upward } 0 17 {B102R:G -> B101R:A: adjacent_3p downward } 0 18 {B102R:G -> B103R:U: adjacent_5p upward } 0 19 {B103R:U -> B102R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A74R:U 0 1 A75R:G 0 2 A76R:G 0 3 A77R:U 0 4 B99R:A 0 5 B100R:G 0 6 B101R:A 0 7 B102R:G 0 [Edges] 0 {A74R:U -> A75R:G: adjacent_5p upward } 0 1 {A75R:G -> A74R:U: adjacent_3p downward } 0 2 {A74R:U -> B102R:G: pairing antiparallel trans 91 Bh/Ww } 0 3 {B102R:G -> A74R:U: pairing antiparallel trans 91 Ww/Bh } 0 4 {A75R:G -> A76R:G: adjacent_5p upward } 0 5 {A76R:G -> A75R:G: adjacent_3p downward } 0 6 {A75R:G -> B101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {B101R:A -> A75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A76R:G -> A77R:U: adjacent_5p upward } 0 9 {A77R:U -> A76R:G: adjacent_3p downward } 0 10 {A76R:G -> B100R:G: pairing antiparallel trans 115 Ww/Bh } 0 11 {B100R:G -> A76R:G: pairing antiparallel trans 115 Bh/Ww } 0 12 {A77R:U -> B99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 13 {B99R:A -> A77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 14 {B99R:A -> B100R:G: adjacent_5p upward } 0 15 {B100R:G -> B99R:A: adjacent_3p downward } 0 16 {B100R:G -> B101R:A: adjacent_5p upward } 0 17 {B101R:A -> B100R:G: adjacent_3p downward } 0 18 {B101R:A -> B102R:G: adjacent_5p upward } 0 19 {B102R:G -> B101R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A75R:G 0 1 A76R:G 0 2 A77R:U 0 3 A78R:A 0 4 B98R:G 0 5 B99R:A 0 6 B100R:G 0 7 B101R:A 0 [Edges] 0 {A75R:G -> A76R:G: adjacent_5p upward } 0 1 {A76R:G -> A75R:G: adjacent_3p downward } 0 2 {A75R:G -> B101R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B101R:A -> A75R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A76R:G -> A77R:U: adjacent_5p upward } 0 5 {A77R:U -> A76R:G: adjacent_3p downward } 0 6 {A76R:G -> B100R:G: pairing antiparallel trans 115 Ww/Bh } 0 7 {B100R:G -> A76R:G: pairing antiparallel trans 115 Bh/Ww } 0 8 {A77R:U -> A78R:A: adjacent_5p } 0 9 {A78R:A -> A77R:U: adjacent_3p } 0 10 {A77R:U -> B99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 11 {B99R:A -> A77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 12 {A78R:A -> B98R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {B98R:G -> A78R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {A78R:A -> B99R:A: outward } 0 15 {B99R:A -> A78R:A: outward } 0 16 {B98R:G -> B99R:A: adjacent_5p } 0 17 {B99R:A -> B98R:G: adjacent_3p } 0 18 {B99R:A -> B100R:G: adjacent_5p upward } 0 19 {B100R:G -> B99R:A: adjacent_3p downward } 0 20 {B100R:G -> B101R:A: adjacent_5p upward } 0 21 {B101R:A -> B100R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A76R:G 0 1 A77R:U 0 2 A78R:A 0 3 A79R:G 0 4 B97R:C 0 5 B98R:G 0 6 B99R:A 0 7 B100R:G 0 [Edges] 0 {A76R:G -> A77R:U: adjacent_5p upward } 0 1 {A77R:U -> A76R:G: adjacent_3p downward } 0 2 {A76R:G -> B100R:G: pairing antiparallel trans 115 Ww/Bh } 0 3 {B100R:G -> A76R:G: pairing antiparallel trans 115 Bh/Ww } 0 4 {A77R:U -> A78R:A: adjacent_5p } 0 5 {A78R:A -> A77R:U: adjacent_3p } 0 6 {A77R:U -> B99R:A: pairing antiparallel trans XXIV Ws/Hh } 0 7 {B99R:A -> A77R:U: pairing antiparallel trans XXIV Hh/Ws } 0 8 {A78R:A -> A79R:G: adjacent_5p upward } 0 9 {A79R:G -> A78R:A: adjacent_3p downward } 0 10 {A78R:A -> B98R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {B98R:G -> A78R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {A78R:A -> B99R:A: outward } 0 13 {B99R:A -> A78R:A: outward } 0 14 {A79R:G -> B97R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B97R:C -> A79R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B97R:C -> B98R:G: adjacent_5p upward } 0 17 {B98R:G -> B97R:C: adjacent_3p downward } 0 18 {B98R:G -> B99R:A: adjacent_5p } 0 19 {B99R:A -> B98R:G: adjacent_3p } 0 20 {B99R:A -> B100R:G: adjacent_5p upward } 0 21 {B100R:G -> B99R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A80R:U 0 1 A81R:G 0 2 A82R:G 0 3 A83R:G 0 4 A93R:C 0 5 A94R:C 0 6 A95R:U 0 7 A96R:G 0 [Edges] 0 {A80R:U -> A81R:G: adjacent_5p outward } 0 1 {A81R:G -> A80R:U: adjacent_3p outward } 0 2 {A80R:U -> A96R:G: pairing parallel cis one_hbond 90 Hw/Ws } 0 3 {A96R:G -> A80R:U: pairing parallel cis one_hbond 90 Ws/Hw } 0 4 {A81R:G -> A82R:G: adjacent_5p upward } 0 5 {A82R:G -> A81R:G: adjacent_3p downward } 0 6 {A82R:G -> A83R:G: adjacent_5p upward } 0 7 {A83R:G -> A82R:G: adjacent_3p downward } 0 8 {A82R:G -> A94R:C: pairing antiparallel cis 122 Ww/Ww } 0 9 {A94R:C -> A82R:G: pairing antiparallel cis 122 Ww/Ww } 0 10 {A83R:G -> A93R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A93R:C -> A83R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A93R:C -> A94R:C: adjacent_5p } 0 13 {A94R:C -> A93R:C: adjacent_3p } 0 14 {A94R:C -> A95R:U: adjacent_5p upward } 0 15 {A95R:U -> A94R:C: adjacent_3p downward } 0 16 {A95R:U -> A96R:G: adjacent_5p upward } 0 17 {A96R:G -> A95R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 A82R:G 0 1 A83R:G 0 2 A84R:C 0 3 A85R:G 0 4 A91R:C 0 5 A92R:G 0 6 A93R:C 0 7 A94R:C 0 [Edges] 0 {A82R:G -> A83R:G: adjacent_5p upward } 0 1 {A83R:G -> A82R:G: adjacent_3p downward } 0 2 {A82R:G -> A94R:C: pairing antiparallel cis 122 Ww/Ww } 0 3 {A94R:C -> A82R:G: pairing antiparallel cis 122 Ww/Ww } 0 4 {A83R:G -> A84R:C: adjacent_5p } 0 5 {A84R:C -> A83R:G: adjacent_3p } 0 6 {A83R:G -> A93R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A93R:C -> A83R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A84R:C -> A85R:G: adjacent_5p } 0 9 {A85R:G -> A84R:C: adjacent_3p } 0 10 {A84R:C -> A92R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A92R:G -> A84R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A85R:G -> A91R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A91R:C -> A85R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A85R:G -> A92R:G: outward } 0 15 {A92R:G -> A85R:G: outward } 0 16 {A91R:C -> A92R:G: adjacent_5p } 0 17 {A92R:G -> A91R:C: adjacent_3p } 0 18 {A92R:G -> A93R:C: adjacent_5p upward } 0 19 {A93R:C -> A92R:G: adjacent_3p downward } 0 20 {A93R:C -> A94R:C: adjacent_5p } 0 21 {A94R:C -> A93R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A83R:G 0 1 A84R:C 0 2 A85R:G 0 3 A86R:G 0 4 A90R:C 0 5 A91R:C 0 6 A92R:G 0 7 A93R:C 0 [Edges] 0 {A83R:G -> A84R:C: adjacent_5p } 0 1 {A84R:C -> A83R:G: adjacent_3p } 0 2 {A83R:G -> A93R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A93R:C -> A83R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A84R:C -> A85R:G: adjacent_5p } 0 5 {A85R:G -> A84R:C: adjacent_3p } 0 6 {A84R:C -> A92R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A92R:G -> A84R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A85R:G -> A86R:G: adjacent_5p upward } 0 9 {A86R:G -> A85R:G: adjacent_3p downward } 0 10 {A85R:G -> A91R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A91R:C -> A85R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A85R:G -> A92R:G: outward } 0 13 {A92R:G -> A85R:G: outward } 0 14 {A86R:G -> A90R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {A90R:C -> A86R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {A90R:C -> A91R:C: adjacent_5p } 0 17 {A91R:C -> A90R:C: adjacent_3p } 0 18 {A91R:C -> A92R:G: adjacent_5p } 0 19 {A92R:G -> A91R:C: adjacent_3p } 0 20 {A92R:G -> A93R:C: adjacent_5p upward } 0 21 {A93R:C -> A92R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B80R:U 0 1 B81R:G 0 2 B82R:G 0 3 B83R:G 0 4 B93R:C 0 5 B94R:C 0 6 B95R:U 0 7 B96R:G 0 [Edges] 0 {B80R:U -> B81R:G: adjacent_5p } 0 1 {B81R:G -> B80R:U: adjacent_3p } 0 2 {B80R:U -> B96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B96R:G -> B80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {B81R:G -> B82R:G: adjacent_5p upward } 0 5 {B82R:G -> B81R:G: adjacent_3p downward } 0 6 {B82R:G -> B83R:G: adjacent_5p upward } 0 7 {B83R:G -> B82R:G: adjacent_3p downward } 0 8 {B82R:G -> B94R:C: pairing antiparallel cis 122 Ww/Ww } 0 9 {B94R:C -> B82R:G: pairing antiparallel cis 122 Ww/Ww } 0 10 {B83R:G -> B93R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B93R:C -> B83R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B93R:C -> B94R:C: adjacent_5p } 0 13 {B94R:C -> B93R:C: adjacent_3p } 0 14 {B94R:C -> B95R:U: adjacent_5p } 0 15 {B95R:U -> B94R:C: adjacent_3p } 0 16 {B95R:U -> B96R:G: adjacent_5p } 0 17 {B96R:G -> B95R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 B82R:G 0 1 B83R:G 0 2 B84R:C 0 3 B85R:G 0 4 B91R:C 0 5 B92R:G 0 6 B93R:C 0 7 B94R:C 0 [Edges] 0 {B82R:G -> B83R:G: adjacent_5p upward } 0 1 {B83R:G -> B82R:G: adjacent_3p downward } 0 2 {B82R:G -> B94R:C: pairing antiparallel cis 122 Ww/Ww } 0 3 {B94R:C -> B82R:G: pairing antiparallel cis 122 Ww/Ww } 0 4 {B83R:G -> B84R:C: adjacent_5p } 0 5 {B84R:C -> B83R:G: adjacent_3p } 0 6 {B83R:G -> B93R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B93R:C -> B83R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B84R:C -> B85R:G: adjacent_5p } 0 9 {B85R:G -> B84R:C: adjacent_3p } 0 10 {B84R:C -> B92R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B92R:G -> B84R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B85R:G -> B91R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B91R:C -> B85R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B85R:G -> B92R:G: outward } 0 15 {B92R:G -> B85R:G: outward } 0 16 {B91R:C -> B92R:G: adjacent_5p } 0 17 {B92R:G -> B91R:C: adjacent_3p } 0 18 {B92R:G -> B93R:C: adjacent_5p upward } 0 19 {B93R:C -> B92R:G: adjacent_3p downward } 0 20 {B93R:C -> B94R:C: adjacent_5p } 0 21 {B94R:C -> B93R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B83R:G 0 1 B84R:C 0 2 B85R:G 0 3 B86R:G 0 4 B90R:C 0 5 B91R:C 0 6 B92R:G 0 7 B93R:C 0 [Edges] 0 {B83R:G -> B84R:C: adjacent_5p } 0 1 {B84R:C -> B83R:G: adjacent_3p } 0 2 {B83R:G -> B93R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B93R:C -> B83R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B84R:C -> B85R:G: adjacent_5p } 0 5 {B85R:G -> B84R:C: adjacent_3p } 0 6 {B84R:C -> B92R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B92R:G -> B84R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B85R:G -> B86R:G: adjacent_5p upward } 0 9 {B86R:G -> B85R:G: adjacent_3p downward } 0 10 {B85R:G -> B91R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B91R:C -> B85R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B85R:G -> B92R:G: outward } 0 13 {B92R:G -> B85R:G: outward } 0 14 {B86R:G -> B90R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B90R:C -> B86R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B90R:C -> B91R:C: adjacent_5p } 0 17 {B91R:C -> B90R:C: adjacent_3p } 0 18 {B91R:C -> B92R:G: adjacent_5p } 0 19 {B92R:G -> B91R:C: adjacent_3p } 0 20 {B92R:G -> B93R:C: adjacent_5p upward } 0 21 {B93R:C -> B92R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:G 0 2 A7R:G 0 3 A8R:C 0 4 C112R:G 0 5 C113R:C 0 6 C114R:C 0 7 C115R:A 0 [Edges] 0 {A5R:U -> A6R:G: adjacent_5p upward } 0 1 {A6R:G -> A5R:U: adjacent_3p downward } 0 2 {A5R:U -> C115R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C115R:A -> A5R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:G -> A7R:G: adjacent_5p upward } 0 5 {A7R:G -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> C114R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C114R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:G -> C115R:A: outward } 0 9 {C115R:A -> A6R:G: outward } 0 10 {A7R:G -> A8R:C: adjacent_5p upward } 0 11 {A8R:C -> A7R:G: adjacent_3p downward } 0 12 {A7R:G -> C113R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C113R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A8R:C -> C112R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {C112R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {C112R:G -> C113R:C: adjacent_5p upward } 0 17 {C113R:C -> C112R:G: adjacent_3p downward } 0 18 {C113R:C -> C114R:C: adjacent_5p } 0 19 {C114R:C -> C113R:C: adjacent_3p } 0 20 {C114R:C -> C115R:A: adjacent_5p upward } 0 21 {C115R:A -> C114R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:G 0 2 A8R:C 0 3 A9R:G 0 4 C111R:U 0 5 C112R:G 0 6 C113R:C 0 7 C114R:C 0 [Edges] 0 {A6R:G -> A7R:G: adjacent_5p upward } 0 1 {A7R:G -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> C114R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C114R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:G -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:G: adjacent_3p downward } 0 6 {A7R:G -> C113R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C113R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:C -> A9R:G: adjacent_5p } 0 9 {A9R:G -> A8R:C: adjacent_3p } 0 10 {A8R:C -> C112R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C112R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A9R:G -> C111R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {C111R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A9R:G -> C112R:G: outward } 0 15 {C112R:G -> A9R:G: outward } 0 16 {C111R:U -> C112R:G: adjacent_5p } 0 17 {C112R:G -> C111R:U: adjacent_3p } 0 18 {C112R:G -> C113R:C: adjacent_5p upward } 0 19 {C113R:C -> C112R:G: adjacent_3p downward } 0 20 {C113R:C -> C114R:C: adjacent_5p } 0 21 {C114R:C -> C113R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:C 0 2 A9R:G 0 3 A10R:G 0 4 C110R:C 0 5 C111R:U 0 6 C112R:G 0 7 C113R:C 0 [Edges] 0 {A7R:G -> A8R:C: adjacent_5p upward } 0 1 {A8R:C -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> C113R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C113R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:C -> A9R:G: adjacent_5p } 0 5 {A9R:G -> A8R:C: adjacent_3p } 0 6 {A8R:C -> C112R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C112R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> C111R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {C111R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A9R:G -> C112R:G: outward } 0 13 {C112R:G -> A9R:G: outward } 0 14 {A10R:G -> C110R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C110R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C110R:C -> C111R:U: adjacent_5p upward } 0 17 {C111R:U -> C110R:C: adjacent_3p downward } 0 18 {C111R:U -> C112R:G: adjacent_5p } 0 19 {C112R:G -> C111R:U: adjacent_3p } 0 20 {C112R:G -> C113R:C: adjacent_5p upward } 0 21 {C113R:C -> C112R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:G 0 2 A10R:G 0 3 A11R:C 0 4 C109R:A 0 5 C110R:C 0 6 C111R:U 0 7 C112R:G 0 [Edges] 0 {A8R:C -> A9R:G: adjacent_5p } 0 1 {A9R:G -> A8R:C: adjacent_3p } 0 2 {A8R:C -> C112R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C112R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:G -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> C111R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {C111R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A9R:G -> C112R:G: outward } 0 9 {C112R:G -> A9R:G: outward } 0 10 {A10R:G -> A11R:C: adjacent_5p upward } 0 11 {A11R:C -> A10R:G: adjacent_3p downward } 0 12 {A10R:G -> C110R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C110R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A11R:C -> C109R:A: pairing parallel cis 80 Ww/Bh } 0 15 {C109R:A -> A11R:C: pairing parallel cis 80 Bh/Ww } 0 16 {C109R:A -> C110R:C: adjacent_5p outward } 0 17 {C110R:C -> C109R:A: adjacent_3p outward } 0 18 {C110R:C -> C111R:U: adjacent_5p upward } 0 19 {C111R:U -> C110R:C: adjacent_3p downward } 0 20 {C111R:U -> C112R:G: adjacent_5p } 0 21 {C112R:G -> C111R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B70R:C 0 1 B71R:C 0 2 B72R:G 0 3 B73R:A 0 4 C103R:U 0 5 C104R:A 0 6 C105R:G 0 7 C106R:G 0 [Edges] 0 {B70R:C -> B71R:C: adjacent_5p upward } 0 1 {B71R:C -> B70R:C: adjacent_3p downward } 0 2 {B70R:C -> C106R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C106R:G -> B70R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B71R:C -> B72R:G: adjacent_5p upward } 0 5 {B72R:G -> B71R:C: adjacent_3p downward } 0 6 {B71R:C -> C105R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {C105R:G -> B71R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B72R:G -> B73R:A: adjacent_5p } 0 9 {B73R:A -> B72R:G: adjacent_3p } 0 10 {B72R:G -> C104R:A: pairing antiparallel trans XI Ss/Hh } 0 11 {C104R:A -> B72R:G: pairing antiparallel trans XI Hh/Ss } 0 12 {B73R:A -> C103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 13 {C103R:U -> B73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 14 {B73R:A -> C104R:A: outward } 0 15 {C104R:A -> B73R:A: outward } 0 16 {C103R:U -> C104R:A: adjacent_5p upward } 0 17 {C104R:A -> C103R:U: adjacent_3p downward } 0 18 {C104R:A -> C105R:G: adjacent_5p upward } 0 19 {C105R:G -> C104R:A: adjacent_3p downward } 0 20 {C105R:G -> C106R:G: adjacent_5p upward } 0 21 {C106R:G -> C105R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B71R:C 0 1 B72R:G 0 2 B73R:A 0 3 B74R:U 0 4 C102R:G 0 5 C103R:U 0 6 C104R:A 0 7 C105R:G 0 [Edges] 0 {B71R:C -> B72R:G: adjacent_5p upward } 0 1 {B72R:G -> B71R:C: adjacent_3p downward } 0 2 {B71R:C -> C105R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C105R:G -> B71R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B72R:G -> B73R:A: adjacent_5p } 0 5 {B73R:A -> B72R:G: adjacent_3p } 0 6 {B72R:G -> C104R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {C104R:A -> B72R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {B73R:A -> B74R:U: adjacent_5p upward } 0 9 {B74R:U -> B73R:A: adjacent_3p downward } 0 10 {B73R:A -> C103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 11 {C103R:U -> B73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 12 {B73R:A -> C104R:A: outward } 0 13 {C104R:A -> B73R:A: outward } 0 14 {B74R:U -> C102R:G: pairing antiparallel trans 91 Bh/Ww } 0 15 {C102R:G -> B74R:U: pairing antiparallel trans 91 Ww/Bh } 0 16 {C102R:G -> C103R:U: adjacent_5p upward } 0 17 {C103R:U -> C102R:G: adjacent_3p downward } 0 18 {C103R:U -> C104R:A: adjacent_5p upward } 0 19 {C104R:A -> C103R:U: adjacent_3p downward } 0 20 {C104R:A -> C105R:G: adjacent_5p upward } 0 21 {C105R:G -> C104R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B73R:A 0 1 B74R:U 0 2 B75R:G 0 3 B76R:G 0 4 C100R:G 0 5 C101R:A 0 6 C102R:G 0 7 C103R:U 0 [Edges] 0 {B73R:A -> B74R:U: adjacent_5p upward } 0 1 {B74R:U -> B73R:A: adjacent_3p downward } 0 2 {B73R:A -> C103R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {C103R:U -> B73R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {B74R:U -> B75R:G: adjacent_5p upward } 0 5 {B75R:G -> B74R:U: adjacent_3p downward } 0 6 {B74R:U -> C102R:G: pairing antiparallel trans 91 Bh/Ww } 0 7 {C102R:G -> B74R:U: pairing antiparallel trans 91 Ww/Bh } 0 8 {B75R:G -> B76R:G: adjacent_5p upward } 0 9 {B76R:G -> B75R:G: adjacent_3p downward } 0 10 {B76R:G -> C100R:G: pairing antiparallel trans 115 Ww/Bh } 0 11 {C100R:G -> B76R:G: pairing antiparallel trans 115 Bh/Ww } 0 12 {C100R:G -> C101R:A: adjacent_5p upward } 0 13 {C101R:A -> C100R:G: adjacent_3p downward } 0 14 {C101R:A -> C102R:G: adjacent_5p upward } 0 15 {C102R:G -> C101R:A: adjacent_3p downward } 0 16 {C102R:G -> C103R:U: adjacent_5p upward } 0 17 {C103R:U -> C102R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 . . . 4 . . . 11 . 12 . . 5 . . . . 13 . 14 . 6 . 7 . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 B74R:U 0 1 B75R:G 0 2 B76R:G 0 3 B77R:U 0 4 C99R:A 0 5 C100R:G 0 6 C101R:A 0 7 C102R:G 0 [Edges] 0 {B74R:U -> B75R:G: adjacent_5p upward } 0 1 {B75R:G -> B74R:U: adjacent_3p downward } 0 2 {B74R:U -> C102R:G: pairing antiparallel trans 91 Bh/Ww } 0 3 {C102R:G -> B74R:U: pairing antiparallel trans 91 Ww/Bh } 0 4 {B75R:G -> B76R:G: adjacent_5p upward } 0 5 {B76R:G -> B75R:G: adjacent_3p downward } 0 6 {B76R:G -> B77R:U: adjacent_5p upward } 0 7 {B77R:U -> B76R:G: adjacent_3p downward } 0 8 {B76R:G -> C100R:G: pairing antiparallel trans 115 Ww/Bh } 0 9 {C100R:G -> B76R:G: pairing antiparallel trans 115 Bh/Ww } 0 10 {B77R:U -> C99R:A: pairing antiparallel trans XXIV Ww/Hh } 0 11 {C99R:A -> B77R:U: pairing antiparallel trans XXIV Hh/Ww } 0 12 {C99R:A -> C100R:G: adjacent_5p upward } 0 13 {C100R:G -> C99R:A: adjacent_3p downward } 0 14 {C100R:G -> C101R:A: adjacent_5p upward } 0 15 {C101R:A -> C100R:G: adjacent_3p downward } 0 16 {C101R:A -> C102R:G: adjacent_5p upward } 0 17 {C102R:G -> C101R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 . . 3 . . 7 . 10 . . . 4 . . . 11 . 12 . . 5 . . 9 . 13 . 14 . 6 . . . . . 15 . 16 7 3 . . . . . 17 . [GraphModel] [Vertices] 0 B76R:G 0 1 B77R:U 0 2 B78R:A 0 3 B79R:G 0 4 C97R:C 0 5 C98R:G 0 6 C99R:A 0 7 C100R:G 0 [Edges] 0 {B76R:G -> B77R:U: adjacent_5p upward } 0 1 {B77R:U -> B76R:G: adjacent_3p downward } 0 2 {B76R:G -> C100R:G: pairing antiparallel trans 115 Ww/Bh } 0 3 {C100R:G -> B76R:G: pairing antiparallel trans 115 Bh/Ww } 0 4 {B77R:U -> B78R:A: adjacent_5p } 0 5 {B78R:A -> B77R:U: adjacent_3p } 0 6 {B77R:U -> C99R:A: pairing antiparallel trans XXIV Ww/Hh } 0 7 {C99R:A -> B77R:U: pairing antiparallel trans XXIV Hh/Ww } 0 8 {B78R:A -> B79R:G: adjacent_5p upward } 0 9 {B79R:G -> B78R:A: adjacent_3p downward } 0 10 {B78R:A -> C98R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {C98R:G -> B78R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {B78R:A -> C99R:A: outward } 0 13 {C99R:A -> B78R:A: outward } 0 14 {B79R:G -> C97R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C97R:C -> B79R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C97R:C -> C98R:G: adjacent_5p upward } 0 17 {C98R:G -> C97R:C: adjacent_3p downward } 0 18 {C98R:G -> C99R:A: adjacent_5p } 0 19 {C99R:A -> C98R:G: adjacent_3p } 0 20 {C99R:A -> C100R:G: adjacent_5p upward } 0 21 {C100R:G -> C99R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B78R:A 0 1 B79R:G 0 2 B80R:U 0 3 B81R:G 0 4 C95R:U 0 5 C96R:G 0 6 C97R:C 0 7 C98R:G 0 [Edges] 0 {B78R:A -> B79R:G: adjacent_5p upward } 0 1 {B79R:G -> B78R:A: adjacent_3p downward } 0 2 {B78R:A -> C98R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {C98R:G -> B78R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {B79R:G -> B80R:U: adjacent_5p upward } 0 5 {B80R:U -> B79R:G: adjacent_3p downward } 0 6 {B79R:G -> C97R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C97R:C -> B79R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B80R:U -> B81R:G: adjacent_5p } 0 9 {B81R:G -> B80R:U: adjacent_3p } 0 10 {B81R:G -> C95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {C95R:U -> B81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {B81R:G -> C96R:G: outward } 0 13 {C96R:G -> B81R:G: outward } 0 14 {C95R:U -> C96R:G: adjacent_5p } 0 15 {C96R:G -> C95R:U: adjacent_3p } 0 16 {C96R:G -> C97R:C: adjacent_5p upward } 0 17 {C97R:C -> C96R:G: adjacent_3p downward } 0 18 {C97R:C -> C98R:G: adjacent_5p upward } 0 19 {C98R:G -> C97R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . . . . 3 . . 9 . 10 12 . . 4 . . . 11 . 14 . . 5 . . . 13 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B79R:G 0 1 B80R:U 0 2 B81R:G 0 3 B82R:U 0 4 C94R:A 0 5 C95R:U 0 6 C96R:G 0 7 C97R:C 0 [Edges] 0 {B79R:G -> B80R:U: adjacent_5p upward } 0 1 {B80R:U -> B79R:G: adjacent_3p downward } 0 2 {B79R:G -> C97R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C97R:C -> B79R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B80R:U -> B81R:G: adjacent_5p } 0 5 {B81R:G -> B80R:U: adjacent_3p } 0 6 {B81R:G -> B82R:U: adjacent_5p upward } 0 7 {B82R:U -> B81R:G: adjacent_3p downward } 0 8 {B81R:G -> C95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {C95R:U -> B81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {B81R:G -> C96R:G: outward } 0 11 {C96R:G -> B81R:G: outward } 0 12 {B82R:U -> C94R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {C94R:A -> B82R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {C94R:A -> C95R:U: adjacent_5p upward } 0 15 {C95R:U -> C94R:A: adjacent_3p downward } 0 16 {C95R:U -> C96R:G: adjacent_5p } 0 17 {C96R:G -> C95R:U: adjacent_3p } 0 18 {C96R:G -> C97R:C: adjacent_5p upward } 0 19 {C97R:C -> C96R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . . . 2 . 5 . 6 . 8 10 . 3 . . 7 . 12 . . . 4 . . . 13 . 14 . . 5 . . 9 . 15 . 16 . 6 . . 11 . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 B81R:G 0 1 B82R:U 0 2 B83R:G 0 3 B84R:G 0 4 C92R:C 0 5 C93R:C 0 6 C94R:A 0 7 C95R:U 0 [Edges] 0 {B81R:G -> B82R:U: adjacent_5p upward } 0 1 {B82R:U -> B81R:G: adjacent_3p downward } 0 2 {B81R:G -> C95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {C95R:U -> B81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {B82R:U -> B83R:G: adjacent_5p } 0 5 {B83R:G -> B82R:U: adjacent_3p } 0 6 {B82R:U -> C94R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {C94R:A -> B82R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B83R:G -> B84R:G: adjacent_5p upward } 0 9 {B84R:G -> B83R:G: adjacent_3p downward } 0 10 {B83R:G -> C93R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C93R:C -> B83R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B83R:G -> C94R:A: outward } 0 13 {C94R:A -> B83R:G: outward } 0 14 {B84R:G -> C92R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C92R:C -> B84R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C92R:C -> C93R:C: adjacent_5p } 0 17 {C93R:C -> C92R:C: adjacent_3p } 0 18 {C93R:C -> C94R:A: adjacent_5p upward } 0 19 {C94R:A -> C93R:C: adjacent_3p downward } 0 20 {C94R:A -> C95R:U: adjacent_5p upward } 0 21 {C95R:U -> C94R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B82R:U 0 1 B83R:G 0 2 B84R:G 0 3 B85R:G 0 4 C91R:C 0 5 C92R:C 0 6 C93R:C 0 7 C94R:A 0 [Edges] 0 {B82R:U -> B83R:G: adjacent_5p } 0 1 {B83R:G -> B82R:U: adjacent_3p } 0 2 {B82R:U -> C94R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {C94R:A -> B82R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B83R:G -> B84R:G: adjacent_5p upward } 0 5 {B84R:G -> B83R:G: adjacent_3p downward } 0 6 {B83R:G -> C93R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C93R:C -> B83R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B83R:G -> C94R:A: outward } 0 9 {C94R:A -> B83R:G: outward } 0 10 {B84R:G -> B85R:G: adjacent_5p upward } 0 11 {B85R:G -> B84R:G: adjacent_3p downward } 0 12 {B84R:G -> C92R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C92R:C -> B84R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B85R:G -> C91R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {C91R:C -> B85R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {C91R:C -> C92R:C: adjacent_5p upward } 0 17 {C92R:C -> C91R:C: adjacent_3p downward } 0 18 {C92R:C -> C93R:C: adjacent_5p } 0 19 {C93R:C -> C92R:C: adjacent_3p } 0 20 {C93R:C -> C94R:A: adjacent_5p upward } 0 21 {C94R:A -> C93R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B83R:G 0 1 B84R:G 0 2 B85R:G 0 3 B86R:G 0 4 C90R:C 0 5 C91R:C 0 6 C92R:C 0 7 C93R:C 0 [Edges] 0 {B83R:G -> B84R:G: adjacent_5p upward } 0 1 {B84R:G -> B83R:G: adjacent_3p downward } 0 2 {B83R:G -> C93R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C93R:C -> B83R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B84R:G -> B85R:G: adjacent_5p upward } 0 5 {B85R:G -> B84R:G: adjacent_3p downward } 0 6 {B84R:G -> C92R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {C92R:C -> B84R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B85R:G -> B86R:G: adjacent_5p upward } 0 9 {B86R:G -> B85R:G: adjacent_3p downward } 0 10 {B85R:G -> C91R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {C91R:C -> B85R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B86R:G -> C90R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {C90R:C -> B86R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {C90R:C -> C91R:C: adjacent_5p } 0 15 {C91R:C -> C90R:C: adjacent_3p } 0 16 {C91R:C -> C92R:C: adjacent_5p upward } 0 17 {C92R:C -> C91R:C: adjacent_3p downward } 0 18 {C92R:C -> C93R:C: adjacent_5p } 0 19 {C93R:C -> C92R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:A 0 3 A5R:C 0 4 B8R:G 0 5 B9R:U 0 6 B10R:A 0 7 B11R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B11R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B11R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> B10R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B10R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B9R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A4R:A -> B10R:A: outward } 0 13 {B10R:A -> A4R:A: outward } 0 14 {A5R:C -> B8R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B8R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B8R:G -> B9R:U: adjacent_5p upward } 0 17 {B9R:U -> B8R:G: adjacent_3p downward } 0 18 {B9R:U -> B10R:A: adjacent_5p upward } 0 19 {B10R:A -> B9R:U: adjacent_3p downward } 0 20 {B10R:A -> B11R:C: adjacent_5p upward } 0 21 {B11R:C -> B10R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C14R:G 0 1 C15R:U 0 2 C16R:A 0 3 C17R:C 0 4 D20R:G 0 5 D21R:U 0 6 D22R:A 0 7 D23R:C 0 [Edges] 0 {C14R:G -> C15R:U: adjacent_5p upward } 0 1 {C15R:U -> C14R:G: adjacent_3p downward } 0 2 {C14R:G -> D23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D23R:C -> C14R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C15R:U -> C16R:A: adjacent_5p upward } 0 5 {C16R:A -> C15R:U: adjacent_3p downward } 0 6 {C15R:U -> D22R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {D22R:A -> C15R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {C16R:A -> C17R:C: adjacent_5p upward } 0 9 {C17R:C -> C16R:A: adjacent_3p downward } 0 10 {C16R:A -> D21R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D21R:U -> C16R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C16R:A -> D22R:A: outward } 0 13 {D22R:A -> C16R:A: outward } 0 14 {C17R:C -> D20R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {D20R:G -> C17R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {D20R:G -> D21R:U: adjacent_5p upward } 0 17 {D21R:U -> D20R:G: adjacent_3p downward } 0 18 {D21R:U -> D22R:A: adjacent_5p upward } 0 19 {D22R:A -> D21R:U: adjacent_3p downward } 0 20 {D22R:A -> D23R:C: adjacent_5p upward } 0 21 {D23R:C -> D22R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A17R:G 0 1 A18R:C 0 2 A19R:C 0 3 A20R:A 0 4 B42R:U 0 5 B43R:G 0 6 B44R:G 0 7 B45R:C 0 [Edges] 0 {A17R:G -> A18R:C: adjacent_5p upward } 0 1 {A18R:C -> A17R:G: adjacent_3p downward } 0 2 {A17R:G -> B45R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B45R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A18R:C -> A19R:C: adjacent_5p upward } 0 5 {A19R:C -> A18R:C: adjacent_3p downward } 0 6 {A18R:C -> B44R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B44R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A19R:C -> A20R:A: adjacent_5p upward } 0 9 {A20R:A -> A19R:C: adjacent_3p downward } 0 10 {A19R:C -> B43R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B43R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A20R:A -> B42R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B42R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A20R:A -> B43R:G: outward } 0 15 {B43R:G -> A20R:A: outward } 0 16 {B42R:U -> B43R:G: adjacent_5p } 0 17 {B43R:G -> B42R:U: adjacent_3p } 0 18 {B43R:G -> B44R:G: adjacent_5p upward } 0 19 {B44R:G -> B43R:G: adjacent_3p downward } 0 20 {B44R:G -> B45R:C: adjacent_5p upward } 0 21 {B45R:C -> B44R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A18R:C 0 1 A19R:C 0 2 A20R:A 0 3 A21R:G 0 4 B41R:C 0 5 B42R:U 0 6 B43R:G 0 7 B44R:G 0 [Edges] 0 {A18R:C -> A19R:C: adjacent_5p upward } 0 1 {A19R:C -> A18R:C: adjacent_3p downward } 0 2 {A18R:C -> B44R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B44R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A19R:C -> A20R:A: adjacent_5p upward } 0 5 {A20R:A -> A19R:C: adjacent_3p downward } 0 6 {A19R:C -> B43R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B43R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A20R:A -> A21R:G: adjacent_5p upward } 0 9 {A21R:G -> A20R:A: adjacent_3p downward } 0 10 {A20R:A -> B42R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B42R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A20R:A -> B43R:G: outward } 0 13 {B43R:G -> A20R:A: outward } 0 14 {A21R:G -> B41R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B41R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B41R:C -> B42R:U: adjacent_5p upward } 0 17 {B42R:U -> B41R:C: adjacent_3p downward } 0 18 {B42R:U -> B43R:G: adjacent_5p } 0 19 {B43R:G -> B42R:U: adjacent_3p } 0 20 {B43R:G -> B44R:G: adjacent_5p upward } 0 21 {B44R:G -> B43R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A19R:C 0 1 A20R:A 0 2 A21R:G 0 3 A22R:A 0 4 B40R:U 0 5 B41R:C 0 6 B42R:U 0 7 B43R:G 0 [Edges] 0 {A19R:C -> A20R:A: adjacent_5p upward } 0 1 {A20R:A -> A19R:C: adjacent_3p downward } 0 2 {A19R:C -> B43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B43R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A20R:A -> A21R:G: adjacent_5p upward } 0 5 {A21R:G -> A20R:A: adjacent_3p downward } 0 6 {A20R:A -> B42R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B42R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A20R:A -> B43R:G: outward } 0 9 {B43R:G -> A20R:A: outward } 0 10 {A21R:G -> A22R:A: adjacent_5p upward } 0 11 {A22R:A -> A21R:G: adjacent_3p downward } 0 12 {A21R:G -> B41R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B41R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A22R:A -> B40R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B40R:U -> A22R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B40R:U -> B41R:C: adjacent_5p upward } 0 17 {B41R:C -> B40R:U: adjacent_3p downward } 0 18 {B41R:C -> B42R:U: adjacent_5p upward } 0 19 {B42R:U -> B41R:C: adjacent_3p downward } 0 20 {B42R:U -> B43R:G: adjacent_5p } 0 21 {B43R:G -> B42R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:U 0 3 A5R:C 0 4 A18R:G 0 5 A19R:A 0 6 A20R:A 0 7 A21R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> A21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A21R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A20R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:U -> A5R:C: adjacent_5p } 0 9 {A5R:C -> A4R:U: adjacent_3p } 0 10 {A4R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A19R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A5R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A18R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A18R:G -> A19R:A: adjacent_5p upward } 0 15 {A19R:A -> A18R:G: adjacent_3p downward } 0 16 {A19R:A -> A20R:A: adjacent_5p upward } 0 17 {A20R:A -> A19R:A: adjacent_3p downward } 0 18 {A20R:A -> A21R:C: adjacent_5p upward } 0 19 {A21R:C -> A20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:U 0 2 A5R:C 0 3 A6R:C 0 4 A17R:G 0 5 A18R:G 0 6 A19R:A 0 7 A20R:A 0 [Edges] 0 {A3R:U -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> A20R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A20R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:U -> A5R:C: adjacent_5p } 0 5 {A5R:C -> A4R:U: adjacent_3p } 0 6 {A4R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A19R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A5R:C -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:C: adjacent_3p downward } 0 10 {A5R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A18R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A17R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A17R:G -> A18R:G: adjacent_5p upward } 0 15 {A18R:G -> A17R:G: adjacent_3p downward } 0 16 {A18R:G -> A19R:A: adjacent_5p upward } 0 17 {A19R:A -> A18R:G: adjacent_3p downward } 0 18 {A19R:A -> A20R:A: adjacent_5p upward } 0 19 {A20R:A -> A19R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:C 0 2 A6R:C 0 3 A7R:G 0 4 A16R:C 0 5 A17R:G 0 6 A18R:G 0 7 A19R:A 0 [Edges] 0 {A4R:U -> A5R:C: adjacent_5p } 0 1 {A5R:C -> A4R:U: adjacent_3p } 0 2 {A4R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A19R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:C -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:C: adjacent_3p downward } 0 6 {A5R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A18R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:C -> A7R:G: adjacent_5p upward } 0 9 {A7R:G -> A6R:C: adjacent_3p downward } 0 10 {A6R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A17R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {A16R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:G -> A17R:G: outward } 0 15 {A17R:G -> A7R:G: outward } 0 16 {A16R:C -> A17R:G: adjacent_5p upward } 0 17 {A17R:G -> A16R:C: adjacent_3p downward } 0 18 {A17R:G -> A18R:G: adjacent_5p upward } 0 19 {A18R:G -> A17R:G: adjacent_3p downward } 0 20 {A18R:G -> A19R:A: adjacent_5p upward } 0 21 {A19R:A -> A18R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:C 0 2 A7R:G 0 3 A8R:A 0 4 A15R:U 0 5 A16R:C 0 6 A17R:G 0 7 A18R:G 0 [Edges] 0 {A5R:C -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:C: adjacent_3p downward } 0 2 {A5R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A18R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:C -> A7R:G: adjacent_5p upward } 0 5 {A7R:G -> A6R:C: adjacent_3p downward } 0 6 {A6R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:G -> A8R:A: adjacent_5p upward } 0 9 {A8R:A -> A7R:G: adjacent_3p downward } 0 10 {A7R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A16R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:G -> A17R:G: outward } 0 13 {A17R:G -> A7R:G: outward } 0 14 {A8R:A -> A15R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {A15R:U -> A8R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A15R:U -> A16R:C: adjacent_5p upward } 0 17 {A16R:C -> A15R:U: adjacent_3p downward } 0 18 {A16R:C -> A17R:G: adjacent_5p upward } 0 19 {A17R:G -> A16R:C: adjacent_3p downward } 0 20 {A17R:G -> A18R:G: adjacent_5p upward } 0 21 {A18R:G -> A17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A102R:G 0 1 A103R:C 0 2 A104R:C 0 3 A105R:A 0 4 B112R:C 0 5 B113R:A 0 6 B114R:G 0 7 B115R:C 0 [Edges] 0 {A102R:G -> A103R:C: adjacent_5p upward } 0 1 {A103R:C -> A102R:G: adjacent_3p downward } 0 2 {A102R:G -> B115R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B115R:C -> A102R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A103R:C -> A104R:C: adjacent_5p upward } 0 5 {A104R:C -> A103R:C: adjacent_3p downward } 0 6 {A103R:C -> B114R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B114R:G -> A103R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A104R:C -> A105R:A: adjacent_5p } 0 9 {A105R:A -> A104R:C: adjacent_3p } 0 10 {A104R:C -> B113R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 11 {B113R:A -> A104R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 12 {A105R:A -> B112R:C: pairing antiparallel cis one_hbond 78 Wh/Ww } 0 13 {B112R:C -> A105R:A: pairing antiparallel cis one_hbond 78 Ww/Wh } 0 14 {A105R:A -> B113R:A: outward } 0 15 {B113R:A -> A105R:A: outward } 0 16 {B112R:C -> B113R:A: adjacent_5p } 0 17 {B113R:A -> B112R:C: adjacent_3p } 0 18 {B113R:A -> B114R:G: adjacent_5p upward } 0 19 {B114R:G -> B113R:A: adjacent_3p downward } 0 20 {B114R:G -> B115R:C: adjacent_5p upward } 0 21 {B115R:C -> B114R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A103R:C 0 1 A104R:C 0 2 A105R:A 0 3 A106R:G 0 4 B111R:C 0 5 B112R:C 0 6 B113R:A 0 7 B114R:G 0 [Edges] 0 {A103R:C -> A104R:C: adjacent_5p upward } 0 1 {A104R:C -> A103R:C: adjacent_3p downward } 0 2 {A103R:C -> B114R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B114R:G -> A103R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A104R:C -> A105R:A: adjacent_5p } 0 5 {A105R:A -> A104R:C: adjacent_3p } 0 6 {A104R:C -> B113R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 7 {B113R:A -> A104R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 8 {A105R:A -> A106R:G: adjacent_5p upward } 0 9 {A106R:G -> A105R:A: adjacent_3p downward } 0 10 {A105R:A -> B112R:C: pairing antiparallel cis one_hbond 78 Wh/Ww } 0 11 {B112R:C -> A105R:A: pairing antiparallel cis one_hbond 78 Ww/Wh } 0 12 {A105R:A -> B113R:A: outward } 0 13 {B113R:A -> A105R:A: outward } 0 14 {A106R:G -> B111R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B111R:C -> A106R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B111R:C -> B112R:C: adjacent_5p upward } 0 17 {B112R:C -> B111R:C: adjacent_3p downward } 0 18 {B112R:C -> B113R:A: adjacent_5p } 0 19 {B113R:A -> B112R:C: adjacent_3p } 0 20 {B113R:A -> B114R:G: adjacent_5p upward } 0 21 {B114R:G -> B113R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A104R:C 0 1 A105R:A 0 2 A106R:G 0 3 A107R:C 0 4 B110R:G 0 5 B111R:C 0 6 B112R:C 0 7 B113R:A 0 [Edges] 0 {A104R:C -> A105R:A: adjacent_5p } 0 1 {A105R:A -> A104R:C: adjacent_3p } 0 2 {A104R:C -> B113R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 3 {B113R:A -> A104R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 4 {A105R:A -> A106R:G: adjacent_5p upward } 0 5 {A106R:G -> A105R:A: adjacent_3p downward } 0 6 {A105R:A -> B112R:C: pairing antiparallel cis one_hbond 78 Wh/Ww } 0 7 {B112R:C -> A105R:A: pairing antiparallel cis one_hbond 78 Ww/Wh } 0 8 {A105R:A -> B113R:A: outward } 0 9 {B113R:A -> A105R:A: outward } 0 10 {A106R:G -> A107R:C: adjacent_5p upward } 0 11 {A107R:C -> A106R:G: adjacent_3p downward } 0 12 {A106R:G -> B111R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B111R:C -> A106R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A107R:C -> B110R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B110R:G -> A107R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B110R:G -> B111R:C: adjacent_5p upward } 0 17 {B111R:C -> B110R:G: adjacent_3p downward } 0 18 {B111R:C -> B112R:C: adjacent_5p upward } 0 19 {B112R:C -> B111R:C: adjacent_3p downward } 0 20 {B112R:C -> B113R:A: adjacent_5p } 0 21 {B113R:A -> B112R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:C 0 1 A3R:A 0 2 A4R:G 0 3 A5R:A 0 4 B28R:U 0 5 B29R:C 0 6 B30R:U 0 7 B31R:G 0 [Edges] 0 {A2R:C -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:C: adjacent_3p downward } 0 2 {A2R:C -> B31R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B31R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> B30R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B30R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A3R:A -> B31R:G: outward } 0 9 {B31R:G -> A3R:A: outward } 0 10 {A4R:G -> A5R:A: adjacent_5p upward } 0 11 {A5R:A -> A4R:G: adjacent_3p downward } 0 12 {A4R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B29R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A5R:A -> B28R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B28R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B28R:U -> B29R:C: adjacent_5p upward } 0 17 {B29R:C -> B28R:U: adjacent_3p downward } 0 18 {B29R:C -> B30R:U: adjacent_5p upward } 0 19 {B30R:U -> B29R:C: adjacent_3p downward } 0 20 {B30R:U -> B31R:G: adjacent_5p } 0 21 {B31R:G -> B30R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:G 0 2 A5R:A 0 3 A6R:C 0 4 B27R:A 0 5 B28R:U 0 6 B29R:C 0 7 B30R:U 0 [Edges] 0 {A3R:A -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> B30R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B30R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B29R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:A -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:A: adjacent_3p downward } 0 10 {A5R:A -> B28R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B28R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:C -> B27R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 13 {B27R:A -> A6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 14 {B27R:A -> B28R:U: adjacent_5p upward } 0 15 {B28R:U -> B27R:A: adjacent_3p downward } 0 16 {B28R:U -> B29R:C: adjacent_5p upward } 0 17 {B29R:C -> B28R:U: adjacent_3p downward } 0 18 {B29R:C -> B30R:U: adjacent_5p upward } 0 19 {B30R:U -> B29R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:C 0 3 A7R:U 0 4 B26R:A 0 5 B27R:A 0 6 B28R:U 0 7 B29R:C 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B29R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> B28R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B28R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:C -> A7R:U: adjacent_5p } 0 9 {A7R:U -> A6R:C: adjacent_3p } 0 10 {A6R:C -> B27R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 11 {B27R:A -> A6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 12 {A7R:U -> B26R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B26R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B26R:A -> B27R:A: adjacent_5p upward } 0 15 {B27R:A -> B26R:A: adjacent_3p downward } 0 16 {B27R:A -> B28R:U: adjacent_5p upward } 0 17 {B28R:U -> B27R:A: adjacent_3p downward } 0 18 {B28R:U -> B29R:C: adjacent_5p upward } 0 19 {B29R:C -> B28R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:C 0 2 A7R:U 0 3 A8R:U 0 4 B25R:A 0 5 B26R:A 0 6 B27R:A 0 7 B28R:U 0 [Edges] 0 {A5R:A -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> B28R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B28R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:C -> A7R:U: adjacent_5p } 0 5 {A7R:U -> A6R:C: adjacent_3p } 0 6 {A6R:C -> B27R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 7 {B27R:A -> A6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 8 {A7R:U -> A8R:U: adjacent_5p upward } 0 9 {A8R:U -> A7R:U: adjacent_3p downward } 0 10 {A7R:U -> B26R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B26R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A8R:U -> B25R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B25R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B25R:A -> B26R:A: adjacent_5p upward } 0 15 {B26R:A -> B25R:A: adjacent_3p downward } 0 16 {B26R:A -> B27R:A: adjacent_5p upward } 0 17 {B27R:A -> B26R:A: adjacent_3p downward } 0 18 {B27R:A -> B28R:U: adjacent_5p upward } 0 19 {B28R:U -> B27R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:U 0 2 A8R:U 0 3 A9R:A 0 4 B24R:U 0 5 B25R:A 0 6 B26R:A 0 7 B27R:A 0 [Edges] 0 {A6R:C -> A7R:U: adjacent_5p } 0 1 {A7R:U -> A6R:C: adjacent_3p } 0 2 {A6R:C -> B27R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 3 {B27R:A -> A6R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 4 {A7R:U -> A8R:U: adjacent_5p upward } 0 5 {A8R:U -> A7R:U: adjacent_3p downward } 0 6 {A7R:U -> B26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B26R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A8R:U -> A9R:A: adjacent_5p upward } 0 9 {A9R:A -> A8R:U: adjacent_3p downward } 0 10 {A8R:U -> B25R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B25R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:A -> B24R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B24R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A9R:A -> B25R:A: outward } 0 15 {B25R:A -> A9R:A: outward } 0 16 {B24R:U -> B25R:A: adjacent_5p upward } 0 17 {B25R:A -> B24R:U: adjacent_3p downward } 0 18 {B25R:A -> B26R:A: adjacent_5p upward } 0 19 {B26R:A -> B25R:A: adjacent_3p downward } 0 20 {B26R:A -> B27R:A: adjacent_5p upward } 0 21 {B27R:A -> B26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:U 0 1 A8R:U 0 2 A9R:A 0 3 A10R:A 0 4 B23R:U 0 5 B24R:U 0 6 B25R:A 0 7 B26R:A 0 [Edges] 0 {A7R:U -> A8R:U: adjacent_5p upward } 0 1 {A8R:U -> A7R:U: adjacent_3p downward } 0 2 {A7R:U -> B26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B26R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A8R:U -> A9R:A: adjacent_5p upward } 0 5 {A9R:A -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> B25R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B25R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:A -> A10R:A: adjacent_5p upward } 0 9 {A10R:A -> A9R:A: adjacent_3p downward } 0 10 {A9R:A -> B24R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B24R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:A -> B25R:A: outward } 0 13 {B25R:A -> A9R:A: outward } 0 14 {A10R:A -> B23R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B23R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B23R:U -> B24R:U: adjacent_5p } 0 17 {B24R:U -> B23R:U: adjacent_3p } 0 18 {B24R:U -> B25R:A: adjacent_5p upward } 0 19 {B25R:A -> B24R:U: adjacent_3p downward } 0 20 {B25R:A -> B26R:A: adjacent_5p upward } 0 21 {B26R:A -> B25R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:A 0 2 A10R:A 0 3 A11R:A 0 4 B22R:C 0 5 B23R:U 0 6 B24R:U 0 7 B25R:A 0 [Edges] 0 {A8R:U -> A9R:A: adjacent_5p upward } 0 1 {A9R:A -> A8R:U: adjacent_3p downward } 0 2 {A8R:U -> B25R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B25R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:A -> A10R:A: adjacent_5p upward } 0 5 {A10R:A -> A9R:A: adjacent_3p downward } 0 6 {A9R:A -> B24R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B24R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:A -> B25R:A: outward } 0 9 {B25R:A -> A9R:A: outward } 0 10 {A10R:A -> A11R:A: adjacent_5p upward } 0 11 {A11R:A -> A10R:A: adjacent_3p downward } 0 12 {A10R:A -> B23R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B23R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A11R:A -> B22R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 15 {B22R:C -> A11R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 16 {B22R:C -> B23R:U: adjacent_5p } 0 17 {B23R:U -> B22R:C: adjacent_3p } 0 18 {B23R:U -> B24R:U: adjacent_5p } 0 19 {B24R:U -> B23R:U: adjacent_3p } 0 20 {B24R:U -> B25R:A: adjacent_5p upward } 0 21 {B25R:A -> B24R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:A 0 1 A10R:A 0 2 A11R:A 0 3 A12R:U 0 4 B21R:A 0 5 B22R:C 0 6 B23R:U 0 7 B24R:U 0 [Edges] 0 {A9R:A -> A10R:A: adjacent_5p upward } 0 1 {A10R:A -> A9R:A: adjacent_3p downward } 0 2 {A9R:A -> B24R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B24R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A10R:A -> A11R:A: adjacent_5p upward } 0 5 {A11R:A -> A10R:A: adjacent_3p downward } 0 6 {A10R:A -> B23R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B23R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:A -> A12R:U: adjacent_5p upward } 0 9 {A12R:U -> A11R:A: adjacent_3p downward } 0 10 {A11R:A -> B22R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 11 {B22R:C -> A11R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 12 {A12R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B21R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B21R:A -> B22R:C: adjacent_5p upward } 0 15 {B22R:C -> B21R:A: adjacent_3p downward } 0 16 {B22R:C -> B23R:U: adjacent_5p } 0 17 {B23R:U -> B22R:C: adjacent_3p } 0 18 {B23R:U -> B24R:U: adjacent_5p } 0 19 {B24R:U -> B23R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:A 0 1 A11R:A 0 2 A12R:U 0 3 A13R:C 0 4 B20R:G 0 5 B21R:A 0 6 B22R:C 0 7 B23R:U 0 [Edges] 0 {A10R:A -> A11R:A: adjacent_5p upward } 0 1 {A11R:A -> A10R:A: adjacent_3p downward } 0 2 {A10R:A -> B23R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B23R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A11R:A -> A12R:U: adjacent_5p upward } 0 5 {A12R:U -> A11R:A: adjacent_3p downward } 0 6 {A11R:A -> B22R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 7 {B22R:C -> A11R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 8 {A12R:U -> A13R:C: adjacent_5p upward } 0 9 {A13R:C -> A12R:U: adjacent_3p downward } 0 10 {A12R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B21R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A13R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B20R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B20R:G -> B21R:A: adjacent_5p upward } 0 15 {B21R:A -> B20R:G: adjacent_3p downward } 0 16 {B21R:A -> B22R:C: adjacent_5p upward } 0 17 {B22R:C -> B21R:A: adjacent_3p downward } 0 18 {B22R:C -> B23R:U: adjacent_5p } 0 19 {B23R:U -> B22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:A 0 1 A12R:U 0 2 A13R:C 0 3 A14R:U 0 4 B19R:A 0 5 B20R:G 0 6 B21R:A 0 7 B22R:C 0 [Edges] 0 {A11R:A -> A12R:U: adjacent_5p upward } 0 1 {A12R:U -> A11R:A: adjacent_3p downward } 0 2 {A11R:A -> B22R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 3 {B22R:C -> A11R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 4 {A12R:U -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:U: adjacent_3p downward } 0 6 {A12R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B21R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A13R:C -> A14R:U: adjacent_5p upward } 0 9 {A14R:U -> A13R:C: adjacent_3p downward } 0 10 {A13R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B20R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:U -> B19R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B19R:A -> A14R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B19R:A -> B20R:G: adjacent_5p upward } 0 15 {B20R:G -> B19R:A: adjacent_3p downward } 0 16 {B20R:G -> B21R:A: adjacent_5p upward } 0 17 {B21R:A -> B20R:G: adjacent_3p downward } 0 18 {B21R:A -> B22R:C: adjacent_5p upward } 0 19 {B22R:C -> B21R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A12R:U 0 1 A13R:C 0 2 A14R:U 0 3 A15R:G 0 4 B18R:C 0 5 B19R:A 0 6 B20R:G 0 7 B21R:A 0 [Edges] 0 {A12R:U -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:U: adjacent_3p downward } 0 2 {A12R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B21R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A13R:C -> A14R:U: adjacent_5p upward } 0 5 {A14R:U -> A13R:C: adjacent_3p downward } 0 6 {A13R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B20R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:U -> A15R:G: adjacent_5p } 0 9 {A15R:G -> A14R:U: adjacent_3p } 0 10 {A14R:U -> B19R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B19R:A -> A14R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A15R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B18R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A15R:G -> B19R:A: outward } 0 15 {B19R:A -> A15R:G: outward } 0 16 {B18R:C -> B19R:A: adjacent_5p upward } 0 17 {B19R:A -> B18R:C: adjacent_3p downward } 0 18 {B19R:A -> B20R:G: adjacent_5p upward } 0 19 {B20R:G -> B19R:A: adjacent_3p downward } 0 20 {B20R:G -> B21R:A: adjacent_5p upward } 0 21 {B21R:A -> B20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:U 0 1 A3R:G 0 2 A4R:C 0 3 A5R:A 0 4 B10R:U 0 5 B11R:G 0 6 B12R:C 0 7 B13R:A 0 [Edges] 0 {A2R:U -> A3R:G: adjacent_5p } 0 1 {A3R:G -> A2R:U: adjacent_3p } 0 2 {A2R:U -> B13R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B13R:A -> A2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:G -> B13R:A: outward } 0 9 {B13R:A -> A3R:G: outward } 0 10 {A4R:C -> A5R:A: adjacent_5p upward } 0 11 {A5R:A -> A4R:C: adjacent_3p downward } 0 12 {A4R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B11R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A5R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B10R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A5R:A -> B11R:G: outward } 0 17 {B11R:G -> A5R:A: outward } 0 18 {B10R:U -> B11R:G: adjacent_5p } 0 19 {B11R:G -> B10R:U: adjacent_3p } 0 20 {B11R:G -> B12R:C: adjacent_5p upward } 0 21 {B12R:C -> B11R:G: adjacent_3p downward } 0 22 {B12R:C -> B13R:A: adjacent_5p upward } 0 23 {B13R:A -> B12R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A2R:U 0 1 A3R:A 0 2 A4R:U 0 3 A5R:A 0 4 B10R:U 0 5 B11R:A 0 6 B12R:U 0 7 B13R:A 0 [Edges] 0 {A2R:U -> A3R:A: adjacent_5p } 0 1 {A3R:A -> A2R:U: adjacent_3p } 0 2 {A2R:U -> B13R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B13R:A -> A2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:A -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B12R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A3R:A -> B13R:A: outward } 0 9 {B13R:A -> A3R:A: outward } 0 10 {A4R:U -> A5R:A: adjacent_5p upward } 0 11 {A5R:A -> A4R:U: adjacent_3p downward } 0 12 {A4R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B11R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {A5R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B10R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {A5R:A -> B11R:A: outward } 0 17 {B11R:A -> A5R:A: outward } 0 18 {B10R:U -> B11R:A: adjacent_5p upward } 0 19 {B11R:A -> B10R:U: adjacent_3p downward } 0 20 {B11R:A -> B12R:U: adjacent_5p upward } 0 21 {B12R:U -> B11R:A: adjacent_3p downward } 0 22 {B12R:U -> B13R:A: adjacent_5p upward } 0 23 {B13R:A -> B12R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 C18R:U 0 1 C19R:A 0 2 C20R:U 0 3 C21R:A 0 4 D26R:U 0 5 D27R:A 0 6 D28R:U 0 7 D29R:A 0 [Edges] 0 {C18R:U -> C19R:A: adjacent_5p } 0 1 {C19R:A -> C18R:U: adjacent_3p } 0 2 {C18R:U -> D29R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D29R:A -> C18R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C19R:A -> C20R:U: adjacent_5p upward } 0 5 {C20R:U -> C19R:A: adjacent_3p downward } 0 6 {C19R:A -> D28R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D28R:U -> C19R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C19R:A -> D29R:A: outward } 0 9 {D29R:A -> C19R:A: outward } 0 10 {C20R:U -> C21R:A: adjacent_5p upward } 0 11 {C21R:A -> C20R:U: adjacent_3p downward } 0 12 {C20R:U -> D27R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {D27R:A -> C20R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {C21R:A -> D26R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {D26R:U -> C21R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {C21R:A -> D27R:A: outward } 0 17 {D27R:A -> C21R:A: outward } 0 18 {D26R:U -> D27R:A: adjacent_5p } 0 19 {D27R:A -> D26R:U: adjacent_3p } 0 20 {D27R:A -> D28R:U: adjacent_5p upward } 0 21 {D28R:U -> D27R:A: adjacent_3p downward } 0 22 {D28R:U -> D29R:A: adjacent_5p upward } 0 23 {D29R:A -> D28R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A2R:C 0 1 A3R:A 0 2 A4R:G 0 3 A5R:A 0 4 B28R:U 0 5 B29R:C 0 6 B30R:U 0 7 B31R:G 0 [Edges] 0 {A2R:C -> A3R:A: adjacent_5p upward } 0 1 {A3R:A -> A2R:C: adjacent_3p downward } 0 2 {A2R:C -> B31R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B31R:G -> A2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:A -> A4R:G: adjacent_5p upward } 0 5 {A4R:G -> A3R:A: adjacent_3p downward } 0 6 {A3R:A -> B30R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B30R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A3R:A -> B31R:G: outward } 0 9 {B31R:G -> A3R:A: outward } 0 10 {A4R:G -> A5R:A: adjacent_5p upward } 0 11 {A5R:A -> A4R:G: adjacent_3p downward } 0 12 {A4R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B29R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A5R:A -> B28R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B28R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B28R:U -> B29R:C: adjacent_5p upward } 0 17 {B29R:C -> B28R:U: adjacent_3p downward } 0 18 {B29R:C -> B30R:U: adjacent_5p upward } 0 19 {B30R:U -> B29R:C: adjacent_3p downward } 0 20 {B30R:U -> B31R:G: adjacent_5p } 0 21 {B31R:G -> B30R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A3R:A 0 1 A4R:G 0 2 A5R:A 0 3 A6R:G 0 4 B27R:A 0 5 B28R:U 0 6 B29R:C 0 7 B30R:U 0 [Edges] 0 {A3R:A -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:A: adjacent_3p downward } 0 2 {A3R:A -> B30R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B30R:U -> A3R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B29R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:A -> A6R:G: adjacent_5p inward } 0 9 {A6R:G -> A5R:A: adjacent_3p inward } 0 10 {A5R:A -> B28R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B28R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A6R:G -> B27R:A: pairing parallel cis one_hbond Hw/Wh } 0 13 {B27R:A -> A6R:G: pairing parallel cis one_hbond Wh/Hw } 0 14 {B27R:A -> B28R:U: adjacent_5p upward } 0 15 {B28R:U -> B27R:A: adjacent_3p downward } 0 16 {B28R:U -> B29R:C: adjacent_5p upward } 0 17 {B29R:C -> B28R:U: adjacent_3p downward } 0 18 {B29R:C -> B30R:U: adjacent_5p upward } 0 19 {B30R:U -> B29R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:G 0 3 A7R:U 0 4 B26R:A 0 5 B27R:A 0 6 B28R:U 0 7 B29R:C 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B29R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B29R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> A6R:G: adjacent_5p inward } 0 5 {A6R:G -> A5R:A: adjacent_3p inward } 0 6 {A5R:A -> B28R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B28R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:G -> A7R:U: adjacent_5p outward } 0 9 {A7R:U -> A6R:G: adjacent_3p outward } 0 10 {A6R:G -> B27R:A: pairing parallel cis one_hbond Hw/Wh } 0 11 {B27R:A -> A6R:G: pairing parallel cis one_hbond Wh/Hw } 0 12 {A7R:U -> B26R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B26R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B26R:A -> B27R:A: adjacent_5p upward } 0 15 {B27R:A -> B26R:A: adjacent_3p downward } 0 16 {B27R:A -> B28R:U: adjacent_5p upward } 0 17 {B28R:U -> B27R:A: adjacent_3p downward } 0 18 {B28R:U -> B29R:C: adjacent_5p upward } 0 19 {B29R:C -> B28R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:G 0 2 A7R:U 0 3 A8R:U 0 4 B25R:A 0 5 B26R:A 0 6 B27R:A 0 7 B28R:U 0 [Edges] 0 {A5R:A -> A6R:G: adjacent_5p inward } 0 1 {A6R:G -> A5R:A: adjacent_3p inward } 0 2 {A5R:A -> B28R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B28R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:G -> A7R:U: adjacent_5p outward } 0 5 {A7R:U -> A6R:G: adjacent_3p outward } 0 6 {A6R:G -> B27R:A: pairing parallel cis one_hbond Hw/Wh } 0 7 {B27R:A -> A6R:G: pairing parallel cis one_hbond Wh/Hw } 0 8 {A7R:U -> A8R:U: adjacent_5p } 0 9 {A8R:U -> A7R:U: adjacent_3p } 0 10 {A7R:U -> B26R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B26R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A8R:U -> B25R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B25R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B25R:A -> B26R:A: adjacent_5p upward } 0 15 {B26R:A -> B25R:A: adjacent_3p downward } 0 16 {B26R:A -> B27R:A: adjacent_5p upward } 0 17 {B27R:A -> B26R:A: adjacent_3p downward } 0 18 {B27R:A -> B28R:U: adjacent_5p upward } 0 19 {B28R:U -> B27R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:U 0 2 A8R:U 0 3 A9R:A 0 4 B24R:U 0 5 B25R:A 0 6 B26R:A 0 7 B27R:A 0 [Edges] 0 {A6R:G -> A7R:U: adjacent_5p outward } 0 1 {A7R:U -> A6R:G: adjacent_3p outward } 0 2 {A6R:G -> B27R:A: pairing parallel cis one_hbond Hw/Wh } 0 3 {B27R:A -> A6R:G: pairing parallel cis one_hbond Wh/Hw } 0 4 {A7R:U -> A8R:U: adjacent_5p } 0 5 {A8R:U -> A7R:U: adjacent_3p } 0 6 {A7R:U -> B26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B26R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A8R:U -> A9R:A: adjacent_5p upward } 0 9 {A9R:A -> A8R:U: adjacent_3p downward } 0 10 {A8R:U -> B25R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B25R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:A -> B24R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B24R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A9R:A -> B25R:A: outward } 0 15 {B25R:A -> A9R:A: outward } 0 16 {B24R:U -> B25R:A: adjacent_5p upward } 0 17 {B25R:A -> B24R:U: adjacent_3p downward } 0 18 {B25R:A -> B26R:A: adjacent_5p upward } 0 19 {B26R:A -> B25R:A: adjacent_3p downward } 0 20 {B26R:A -> B27R:A: adjacent_5p upward } 0 21 {B27R:A -> B26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A7R:U 0 1 A8R:U 0 2 A9R:A 0 3 A10R:A 0 4 B23R:U 0 5 B24R:U 0 6 B25R:A 0 7 B26R:A 0 [Edges] 0 {A7R:U -> A8R:U: adjacent_5p } 0 1 {A8R:U -> A7R:U: adjacent_3p } 0 2 {A7R:U -> B26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B26R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A8R:U -> A9R:A: adjacent_5p upward } 0 5 {A9R:A -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> B25R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B25R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:A -> A10R:A: adjacent_5p upward } 0 9 {A10R:A -> A9R:A: adjacent_3p downward } 0 10 {A9R:A -> B24R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B24R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A9R:A -> B25R:A: outward } 0 13 {B25R:A -> A9R:A: outward } 0 14 {A10R:A -> B23R:U: pairing antiparallel cis XX Ww/Ww } 0 15 {B23R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 16 {B23R:U -> B24R:U: adjacent_5p } 0 17 {B24R:U -> B23R:U: adjacent_3p } 0 18 {B24R:U -> B25R:A: adjacent_5p upward } 0 19 {B25R:A -> B24R:U: adjacent_3p downward } 0 20 {B25R:A -> B26R:A: adjacent_5p upward } 0 21 {B26R:A -> B25R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:A 0 2 A10R:A 0 3 A11R:A 0 4 B22R:G 0 5 B23R:U 0 6 B24R:U 0 7 B25R:A 0 [Edges] 0 {A8R:U -> A9R:A: adjacent_5p upward } 0 1 {A9R:A -> A8R:U: adjacent_3p downward } 0 2 {A8R:U -> B25R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B25R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:A -> A10R:A: adjacent_5p upward } 0 5 {A10R:A -> A9R:A: adjacent_3p downward } 0 6 {A9R:A -> B24R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B24R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A9R:A -> B25R:A: outward } 0 9 {B25R:A -> A9R:A: outward } 0 10 {A10R:A -> A11R:A: adjacent_5p upward } 0 11 {A11R:A -> A10R:A: adjacent_3p downward } 0 12 {A10R:A -> B23R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B23R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A11R:A -> B22R:G: pairing parallel cis one_hbond Wh/Hw } 0 15 {B22R:G -> A11R:A: pairing parallel cis one_hbond Hw/Wh } 0 16 {B22R:G -> B23R:U: adjacent_5p outward } 0 17 {B23R:U -> B22R:G: adjacent_3p outward } 0 18 {B23R:U -> B24R:U: adjacent_5p } 0 19 {B24R:U -> B23R:U: adjacent_3p } 0 20 {B24R:U -> B25R:A: adjacent_5p upward } 0 21 {B25R:A -> B24R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:A 0 1 A10R:A 0 2 A11R:A 0 3 A12R:U 0 4 B21R:A 0 5 B22R:G 0 6 B23R:U 0 7 B24R:U 0 [Edges] 0 {A9R:A -> A10R:A: adjacent_5p upward } 0 1 {A10R:A -> A9R:A: adjacent_3p downward } 0 2 {A9R:A -> B24R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B24R:U -> A9R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A10R:A -> A11R:A: adjacent_5p upward } 0 5 {A11R:A -> A10R:A: adjacent_3p downward } 0 6 {A10R:A -> B23R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B23R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A11R:A -> A12R:U: adjacent_5p upward } 0 9 {A12R:U -> A11R:A: adjacent_3p downward } 0 10 {A11R:A -> B22R:G: pairing parallel cis one_hbond Wh/Hw } 0 11 {B22R:G -> A11R:A: pairing parallel cis one_hbond Hw/Wh } 0 12 {A12R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B21R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B21R:A -> B22R:G: adjacent_5p inward } 0 15 {B22R:G -> B21R:A: adjacent_3p inward } 0 16 {B22R:G -> B23R:U: adjacent_5p outward } 0 17 {B23R:U -> B22R:G: adjacent_3p outward } 0 18 {B23R:U -> B24R:U: adjacent_5p } 0 19 {B24R:U -> B23R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A10R:A 0 1 A11R:A 0 2 A12R:U 0 3 A13R:C 0 4 B20R:G 0 5 B21R:A 0 6 B22R:G 0 7 B23R:U 0 [Edges] 0 {A10R:A -> A11R:A: adjacent_5p upward } 0 1 {A11R:A -> A10R:A: adjacent_3p downward } 0 2 {A10R:A -> B23R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B23R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A11R:A -> A12R:U: adjacent_5p upward } 0 5 {A12R:U -> A11R:A: adjacent_3p downward } 0 6 {A11R:A -> B22R:G: pairing parallel cis one_hbond Wh/Hw } 0 7 {B22R:G -> A11R:A: pairing parallel cis one_hbond Hw/Wh } 0 8 {A12R:U -> A13R:C: adjacent_5p upward } 0 9 {A13R:C -> A12R:U: adjacent_3p downward } 0 10 {A12R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B21R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A13R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B20R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B20R:G -> B21R:A: adjacent_5p upward } 0 15 {B21R:A -> B20R:G: adjacent_3p downward } 0 16 {B21R:A -> B22R:G: adjacent_5p inward } 0 17 {B22R:G -> B21R:A: adjacent_3p inward } 0 18 {B22R:G -> B23R:U: adjacent_5p outward } 0 19 {B23R:U -> B22R:G: adjacent_3p outward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A11R:A 0 1 A12R:U 0 2 A13R:C 0 3 A14R:U 0 4 B19R:A 0 5 B20R:G 0 6 B21R:A 0 7 B22R:G 0 [Edges] 0 {A11R:A -> A12R:U: adjacent_5p upward } 0 1 {A12R:U -> A11R:A: adjacent_3p downward } 0 2 {A11R:A -> B22R:G: pairing parallel cis one_hbond Wh/Hw } 0 3 {B22R:G -> A11R:A: pairing parallel cis one_hbond Hw/Wh } 0 4 {A12R:U -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:U: adjacent_3p downward } 0 6 {A12R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B21R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A13R:C -> A14R:U: adjacent_5p upward } 0 9 {A14R:U -> A13R:C: adjacent_3p downward } 0 10 {A13R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B20R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A14R:U -> B19R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B19R:A -> A14R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B19R:A -> B20R:G: adjacent_5p upward } 0 15 {B20R:G -> B19R:A: adjacent_3p downward } 0 16 {B20R:G -> B21R:A: adjacent_5p upward } 0 17 {B21R:A -> B20R:G: adjacent_3p downward } 0 18 {B21R:A -> B22R:G: adjacent_5p inward } 0 19 {B22R:G -> B21R:A: adjacent_3p inward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A12R:U 0 1 A13R:C 0 2 A14R:U 0 3 A15R:G 0 4 B18R:C 0 5 B19R:A 0 6 B20R:G 0 7 B21R:A 0 [Edges] 0 {A12R:U -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:U: adjacent_3p downward } 0 2 {A12R:U -> B21R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B21R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A13R:C -> A14R:U: adjacent_5p upward } 0 5 {A14R:U -> A13R:C: adjacent_3p downward } 0 6 {A13R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B20R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:U -> A15R:G: adjacent_5p } 0 9 {A15R:G -> A14R:U: adjacent_3p } 0 10 {A14R:U -> B19R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B19R:A -> A14R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A15R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B18R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A15R:G -> B19R:A: outward } 0 15 {B19R:A -> A15R:G: outward } 0 16 {B18R:C -> B19R:A: adjacent_5p upward } 0 17 {B19R:A -> B18R:C: adjacent_3p downward } 0 18 {B19R:A -> B20R:G: adjacent_5p upward } 0 19 {B20R:G -> B19R:A: adjacent_3p downward } 0 20 {B20R:G -> B21R:A: adjacent_5p upward } 0 21 {B21R:A -> B20R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:C 0 2 A7R:U 0 3 A8R:U 0 4 B21R:C 0 5 B22R:G 0 6 B23R:G 0 7 B24R:U 0 [Edges] 0 {A5R:A -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> B24R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B24R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:C -> A7R:U: adjacent_5p upward } 0 5 {A7R:U -> A6R:C: adjacent_3p downward } 0 6 {A6R:C -> B23R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B23R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:U -> A8R:U: adjacent_5p } 0 9 {A8R:U -> A7R:U: adjacent_3p } 0 10 {A7R:U -> B22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B22R:G -> A7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A8R:U -> B21R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {B21R:C -> A8R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {B21R:C -> B22R:G: adjacent_5p upward } 0 15 {B22R:G -> B21R:C: adjacent_3p downward } 0 16 {B22R:G -> B23R:G: adjacent_5p upward } 0 17 {B23R:G -> B22R:G: adjacent_3p downward } 0 18 {B23R:G -> B24R:U: adjacent_5p upward } 0 19 {B24R:U -> B23R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:U 0 2 A8R:U 0 3 A9R:C 0 4 B20R:U 0 5 B21R:C 0 6 B22R:G 0 7 B23R:G 0 [Edges] 0 {A6R:C -> A7R:U: adjacent_5p upward } 0 1 {A7R:U -> A6R:C: adjacent_3p downward } 0 2 {A6R:C -> B23R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B23R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:U -> A8R:U: adjacent_5p } 0 5 {A8R:U -> A7R:U: adjacent_3p } 0 6 {A7R:U -> B22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B22R:G -> A7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A8R:U -> A9R:C: adjacent_5p upward } 0 9 {A9R:C -> A8R:U: adjacent_3p downward } 0 10 {A8R:U -> B21R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {B21R:C -> A8R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {A9R:C -> B20R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 13 {B20R:U -> A9R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 14 {B20R:U -> B21R:C: adjacent_5p upward } 0 15 {B21R:C -> B20R:U: adjacent_3p downward } 0 16 {B21R:C -> B22R:G: adjacent_5p upward } 0 17 {B22R:G -> B21R:C: adjacent_3p downward } 0 18 {B22R:G -> B23R:G: adjacent_5p upward } 0 19 {B23R:G -> B22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A7R:U 0 1 A8R:U 0 2 A9R:C 0 3 A10R:G 0 4 B19R:U 0 5 B20R:U 0 6 B21R:C 0 7 B22R:G 0 [Edges] 0 {A7R:U -> A8R:U: adjacent_5p } 0 1 {A8R:U -> A7R:U: adjacent_3p } 0 2 {A7R:U -> B22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B22R:G -> A7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A8R:U -> A9R:C: adjacent_5p upward } 0 5 {A9R:C -> A8R:U: adjacent_3p downward } 0 6 {A8R:U -> B21R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {B21R:C -> A8R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A9R:C -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:C: adjacent_3p downward } 0 10 {A9R:C -> B20R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 11 {B20R:U -> A9R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 12 {A10R:G -> B19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B19R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {B19R:U -> B20R:U: adjacent_5p } 0 15 {B20R:U -> B19R:U: adjacent_3p } 0 16 {B20R:U -> B21R:C: adjacent_5p upward } 0 17 {B21R:C -> B20R:U: adjacent_3p downward } 0 18 {B21R:C -> B22R:G: adjacent_5p upward } 0 19 {B22R:G -> B21R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A8R:U 0 1 A9R:C 0 2 A10R:G 0 3 A11R:G 0 4 B18R:C 0 5 B19R:U 0 6 B20R:U 0 7 B21R:C 0 [Edges] 0 {A8R:U -> A9R:C: adjacent_5p upward } 0 1 {A9R:C -> A8R:U: adjacent_3p downward } 0 2 {A8R:U -> B21R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B21R:C -> A8R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A9R:C -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:C: adjacent_3p downward } 0 6 {A9R:C -> B20R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {B20R:U -> A9R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {A10R:G -> A11R:G: adjacent_5p upward } 0 9 {A11R:G -> A10R:G: adjacent_3p downward } 0 10 {A10R:G -> B19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B19R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A11R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B18R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {B18R:C -> B19R:U: adjacent_5p upward } 0 15 {B19R:U -> B18R:C: adjacent_3p downward } 0 16 {B19R:U -> B20R:U: adjacent_5p } 0 17 {B20R:U -> B19R:U: adjacent_3p } 0 18 {B20R:U -> B21R:C: adjacent_5p upward } 0 19 {B21R:C -> B20R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A9R:C 0 1 A10R:G 0 2 A11R:G 0 3 A12R:U 0 4 B17R:A 0 5 B18R:C 0 6 B19R:U 0 7 B20R:U 0 [Edges] 0 {A9R:C -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:C: adjacent_3p downward } 0 2 {A9R:C -> B20R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B20R:U -> A9R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A10R:G -> A11R:G: adjacent_5p upward } 0 5 {A11R:G -> A10R:G: adjacent_3p downward } 0 6 {A10R:G -> B19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B19R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A11R:G -> A12R:U: adjacent_5p upward } 0 9 {A12R:U -> A11R:G: adjacent_3p downward } 0 10 {A11R:G -> B18R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B18R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A12R:U -> B17R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B17R:A -> A12R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B17R:A -> B18R:C: adjacent_5p upward } 0 15 {B18R:C -> B17R:A: adjacent_3p downward } 0 16 {B18R:C -> B19R:U: adjacent_5p upward } 0 17 {B19R:U -> B18R:C: adjacent_3p downward } 0 18 {B19R:U -> B20R:U: adjacent_5p } 0 19 {B20R:U -> B19R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A19R:G 0 1 A20R:G 0 2 A21R:A 0 3 A22R:C 0 4 B46R:G 0 5 B47R:U 0 6 B48R:C 0 7 B49R:C 0 [Edges] 0 {A19R:G -> A20R:G: adjacent_5p upward } 0 1 {A20R:G -> A19R:G: adjacent_3p downward } 0 2 {A19R:G -> B49R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B49R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A20R:G -> A21R:A: adjacent_5p upward } 0 5 {A21R:A -> A20R:G: adjacent_3p downward } 0 6 {A20R:G -> B48R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B48R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A21R:A -> A22R:C: adjacent_5p upward } 0 9 {A22R:C -> A21R:A: adjacent_3p downward } 0 10 {A21R:A -> B47R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B47R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A22R:C -> B46R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B46R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B46R:G -> B47R:U: adjacent_5p upward } 0 15 {B47R:U -> B46R:G: adjacent_3p downward } 0 16 {B47R:U -> B48R:C: adjacent_5p } 0 17 {B48R:C -> B47R:U: adjacent_3p } 0 18 {B48R:C -> B49R:C: adjacent_5p upward } 0 19 {B49R:C -> B48R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A20R:G 0 1 A21R:A 0 2 A22R:C 0 3 A23R:C 0 4 B45R:A 0 5 B46R:G 0 6 B47R:U 0 7 B48R:C 0 [Edges] 0 {A20R:G -> A21R:A: adjacent_5p upward } 0 1 {A21R:A -> A20R:G: adjacent_3p downward } 0 2 {A20R:G -> B48R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B48R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A21R:A -> A22R:C: adjacent_5p upward } 0 5 {A22R:C -> A21R:A: adjacent_3p downward } 0 6 {A21R:A -> B47R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B47R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A22R:C -> A23R:C: adjacent_5p upward } 0 9 {A23R:C -> A22R:C: adjacent_3p downward } 0 10 {A22R:C -> B46R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B46R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A23R:C -> B45R:A: pairing antiparallel trans one_hbond 78 Bs/Wh } 0 13 {B45R:A -> A23R:C: pairing antiparallel trans one_hbond 78 Wh/Bs } 0 14 {B45R:A -> B46R:G: adjacent_5p upward } 0 15 {B46R:G -> B45R:A: adjacent_3p downward } 0 16 {B46R:G -> B47R:U: adjacent_5p upward } 0 17 {B47R:U -> B46R:G: adjacent_3p downward } 0 18 {B47R:U -> B48R:C: adjacent_5p } 0 19 {B48R:C -> B47R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A27R:C 0 1 A28R:C 0 2 A29R:A 0 3 A30R:G 0 4 B40R:C 0 5 B41R:U 0 6 B42R:G 0 7 B43R:G 0 [Edges] 0 {A27R:C -> A28R:C: adjacent_5p } 0 1 {A28R:C -> A27R:C: adjacent_3p } 0 2 {A27R:C -> B43R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B43R:G -> A27R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A28R:C -> A29R:A: adjacent_5p } 0 5 {A29R:A -> A28R:C: adjacent_3p } 0 6 {A28R:C -> B42R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B42R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A29R:A -> A30R:G: adjacent_5p upward } 0 9 {A30R:G -> A29R:A: adjacent_3p downward } 0 10 {A29R:A -> B41R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B41R:U -> A29R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A29R:A -> B42R:G: outward } 0 13 {B42R:G -> A29R:A: outward } 0 14 {A30R:G -> B40R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B40R:C -> A30R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B40R:C -> B41R:U: adjacent_5p upward } 0 17 {B41R:U -> B40R:C: adjacent_3p downward } 0 18 {B41R:U -> B42R:G: adjacent_5p upward } 0 19 {B42R:G -> B41R:U: adjacent_3p downward } 0 20 {B42R:G -> B43R:G: adjacent_5p upward } 0 21 {B43R:G -> B42R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 C119R:G 0 1 C120R:G 0 2 C121R:A 0 3 C122R:C 0 4 D146R:G 0 5 D147R:U 0 6 D148R:C 0 7 D149R:C 0 [Edges] 0 {C119R:G -> C120R:G: adjacent_5p upward } 0 1 {C120R:G -> C119R:G: adjacent_3p downward } 0 2 {C119R:G -> D149R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D149R:C -> C119R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C120R:G -> C121R:A: adjacent_5p upward } 0 5 {C121R:A -> C120R:G: adjacent_3p downward } 0 6 {C120R:G -> D148R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D148R:C -> C120R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C121R:A -> C122R:C: adjacent_5p upward } 0 9 {C122R:C -> C121R:A: adjacent_3p downward } 0 10 {C121R:A -> D147R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D147R:U -> C121R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C122R:C -> D146R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D146R:G -> C122R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D146R:G -> D147R:U: adjacent_5p upward } 0 15 {D147R:U -> D146R:G: adjacent_3p downward } 0 16 {D147R:U -> D148R:C: adjacent_5p } 0 17 {D148R:C -> D147R:U: adjacent_3p } 0 18 {D148R:C -> D149R:C: adjacent_5p upward } 0 19 {D149R:C -> D148R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C120R:G 0 1 C121R:A 0 2 C122R:C 0 3 C123R:C 0 4 D145R:A 0 5 D146R:G 0 6 D147R:U 0 7 D148R:C 0 [Edges] 0 {C120R:G -> C121R:A: adjacent_5p upward } 0 1 {C121R:A -> C120R:G: adjacent_3p downward } 0 2 {C120R:G -> D148R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D148R:C -> C120R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C121R:A -> C122R:C: adjacent_5p upward } 0 5 {C122R:C -> C121R:A: adjacent_3p downward } 0 6 {C121R:A -> D147R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D147R:U -> C121R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C122R:C -> C123R:C: adjacent_5p upward } 0 9 {C123R:C -> C122R:C: adjacent_3p downward } 0 10 {C122R:C -> D146R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D146R:G -> C122R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C123R:C -> D145R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 13 {D145R:A -> C123R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 14 {D145R:A -> D146R:G: adjacent_5p upward } 0 15 {D146R:G -> D145R:A: adjacent_3p downward } 0 16 {D146R:G -> D147R:U: adjacent_5p upward } 0 17 {D147R:U -> D146R:G: adjacent_3p downward } 0 18 {D147R:U -> D148R:C: adjacent_5p } 0 19 {D148R:C -> D147R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C127R:C 0 1 C128R:C 0 2 C129R:A 0 3 C130R:G 0 4 D140R:C 0 5 D141R:U 0 6 D142R:G 0 7 D143R:G 0 [Edges] 0 {C127R:C -> C128R:C: adjacent_5p } 0 1 {C128R:C -> C127R:C: adjacent_3p } 0 2 {C127R:C -> D143R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D143R:G -> C127R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C128R:C -> C129R:A: adjacent_5p } 0 5 {C129R:A -> C128R:C: adjacent_3p } 0 6 {C128R:C -> D142R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D142R:G -> C128R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C128R:C -> D143R:G: outward } 0 9 {D143R:G -> C128R:C: outward } 0 10 {C129R:A -> C130R:G: adjacent_5p upward } 0 11 {C130R:G -> C129R:A: adjacent_3p downward } 0 12 {C129R:A -> D141R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {D141R:U -> C129R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {C129R:A -> D142R:G: outward } 0 15 {D142R:G -> C129R:A: outward } 0 16 {C130R:G -> D140R:C: pairing antiparallel cis XIX Ww/Ww } 0 17 {D140R:C -> C130R:G: pairing antiparallel cis XIX Ww/Ww } 0 18 {D140R:C -> D141R:U: adjacent_5p } 0 19 {D141R:U -> D140R:C: adjacent_3p } 0 20 {D141R:U -> D142R:G: adjacent_5p upward } 0 21 {D142R:G -> D141R:U: adjacent_3p downward } 0 22 {D142R:G -> D143R:G: adjacent_5p upward } 0 23 {D143R:G -> D142R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 14 . 3 . . 11 . 16 . . . 4 . . . 17 . 18 . . 5 . . 13 . 19 . 20 . 6 . 7 15 . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:G 0 2 A6R:C 0 3 A7R:U 0 4 A23R:C 0 5 A24R:G 0 6 A25R:C 0 7 A26R:A 0 [Edges] 0 {A4R:U -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:U: adjacent_3p downward } 0 2 {A4R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A26R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:G -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> A25R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A25R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A26R:A: outward } 0 9 {A26R:A -> A5R:G: outward } 0 10 {A6R:C -> A7R:U: adjacent_5p upward } 0 11 {A7R:U -> A6R:C: adjacent_3p downward } 0 12 {A6R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A24R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:U -> A23R:C: pairing antiparallel trans one_hbond Ws/Hw } 0 15 {A23R:C -> A7R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 16 {A23R:C -> A24R:G: adjacent_5p } 0 17 {A24R:G -> A23R:C: adjacent_3p } 0 18 {A24R:G -> A25R:C: adjacent_5p } 0 19 {A25R:C -> A24R:G: adjacent_3p } 0 20 {A25R:C -> A26R:A: adjacent_5p } 0 21 {A26R:A -> A25R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A11R:U 0 1 A12R:A 0 2 A13R:C 0 3 A14R:G 0 4 A17R:A 0 5 A18R:G 0 6 A19R:G 0 7 A20R:A 0 [Edges] 0 {A11R:U -> A12R:A: adjacent_5p upward } 0 1 {A12R:A -> A11R:U: adjacent_3p downward } 0 2 {A11R:U -> A20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 3 {A20R:A -> A11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 4 {A12R:A -> A13R:C: adjacent_5p upward } 0 5 {A13R:C -> A12R:A: adjacent_3p downward } 0 6 {A12R:A -> A19R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {A19R:G -> A12R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {A12R:A -> A20R:A: outward } 0 9 {A20R:A -> A12R:A: outward } 0 10 {A13R:C -> A14R:G: adjacent_5p upward } 0 11 {A14R:G -> A13R:C: adjacent_3p downward } 0 12 {A13R:C -> A18R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {A18R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A14R:G -> A17R:A: pairing antiparallel trans XI Ss/Hh } 0 15 {A17R:A -> A14R:G: pairing antiparallel trans XI Hh/Ss } 0 16 {A14R:G -> A18R:G: outward } 0 17 {A18R:G -> A14R:G: outward } 0 18 {A17R:A -> A18R:G: adjacent_5p } 0 19 {A18R:G -> A17R:A: adjacent_3p } 0 20 {A18R:G -> A19R:G: adjacent_5p upward } 0 21 {A19R:G -> A18R:G: adjacent_3p downward } 0 22 {A19R:G -> A20R:A: adjacent_5p } 0 23 {A20R:A -> A19R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:U 0 2 A4R:A 0 3 A5R:U 0 4 B24R:G 0 5 B25R:U 0 6 B26R:A 0 7 B27R:C 0 [Edges] 0 {A2R:G -> A3R:U: adjacent_5p upward } 0 1 {A3R:U -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B27R:C -> A2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A3R:U -> A4R:A: adjacent_5p upward } 0 5 {A4R:A -> A3R:U: adjacent_3p downward } 0 6 {A3R:U -> B26R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B26R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:A: adjacent_3p downward } 0 10 {A4R:A -> B25R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B25R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A4R:A -> B26R:A: outward } 0 13 {B26R:A -> A4R:A: outward } 0 14 {A5R:U -> B24R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {B24R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {B24R:G -> B25R:U: adjacent_5p upward } 0 17 {B25R:U -> B24R:G: adjacent_3p downward } 0 18 {B25R:U -> B26R:A: adjacent_5p upward } 0 19 {B26R:A -> B25R:U: adjacent_3p downward } 0 20 {B26R:A -> B27R:C: adjacent_5p upward } 0 21 {B27R:C -> B26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:A 0 2 A5R:U 0 3 A6R:U 0 4 B23R:G 0 5 B24R:G 0 6 B25R:U 0 7 B26R:A 0 [Edges] 0 {A3R:U -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> B26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B26R:A -> A3R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A4R:A -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:A: adjacent_3p downward } 0 6 {A4R:A -> B25R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B25R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A4R:A -> B26R:A: outward } 0 9 {B26R:A -> A4R:A: outward } 0 10 {A5R:U -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:U: adjacent_3p downward } 0 12 {A5R:U -> B24R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {B24R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A6R:U -> B23R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {B23R:G -> A6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {B23R:G -> B24R:G: adjacent_5p upward } 0 17 {B24R:G -> B23R:G: adjacent_3p downward } 0 18 {B24R:G -> B25R:U: adjacent_5p upward } 0 19 {B25R:U -> B24R:G: adjacent_3p downward } 0 20 {B25R:U -> B26R:A: adjacent_5p upward } 0 21 {B26R:A -> B25R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:A 0 1 A5R:U 0 2 A6R:U 0 3 A7R:G 0 4 B22R:C 0 5 B23R:G 0 6 B24R:G 0 7 B25R:U 0 [Edges] 0 {A4R:A -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> B25R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B25R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:U -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> B24R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B24R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A6R:U -> A7R:G: adjacent_5p } 0 9 {A7R:G -> A6R:U: adjacent_3p } 0 10 {A6R:U -> B23R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B23R:G -> A6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A7R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B22R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:G -> B23R:G: outward } 0 15 {B23R:G -> A7R:G: outward } 0 16 {B22R:C -> B23R:G: adjacent_5p } 0 17 {B23R:G -> B22R:C: adjacent_3p } 0 18 {B23R:G -> B24R:G: adjacent_5p upward } 0 19 {B24R:G -> B23R:G: adjacent_3p downward } 0 20 {B24R:G -> B25R:U: adjacent_5p upward } 0 21 {B25R:U -> B24R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:U 0 2 A7R:G 0 3 A8R:C 0 4 B21R:G 0 5 B22R:C 0 6 B23R:G 0 7 B24R:G 0 [Edges] 0 {A5R:U -> A6R:U: adjacent_5p upward } 0 1 {A6R:U -> A5R:U: adjacent_3p downward } 0 2 {A5R:U -> B24R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B24R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A6R:U -> A7R:G: adjacent_5p } 0 5 {A7R:G -> A6R:U: adjacent_3p } 0 6 {A6R:U -> B23R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B23R:G -> A6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A7R:G -> A8R:C: adjacent_5p upward } 0 9 {A8R:C -> A7R:G: adjacent_3p downward } 0 10 {A7R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B22R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A7R:G -> B23R:G: outward } 0 13 {B23R:G -> A7R:G: outward } 0 14 {A8R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B21R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B21R:G -> B22R:C: adjacent_5p upward } 0 17 {B22R:C -> B21R:G: adjacent_3p downward } 0 18 {B22R:C -> B23R:G: adjacent_5p } 0 19 {B23R:G -> B22R:C: adjacent_3p } 0 20 {B23R:G -> B24R:G: adjacent_5p upward } 0 21 {B24R:G -> B23R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A6R:U 0 1 A7R:G 0 2 A8R:C 0 3 A9R:G 0 4 B20R:U 0 5 B21R:G 0 6 B22R:C 0 7 B23R:G 0 [Edges] 0 {A6R:U -> A7R:G: adjacent_5p } 0 1 {A7R:G -> A6R:U: adjacent_3p } 0 2 {A6R:U -> B23R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B23R:G -> A6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A7R:G -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:G: adjacent_3p downward } 0 6 {A7R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B22R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:G -> B23R:G: outward } 0 9 {B23R:G -> A7R:G: outward } 0 10 {A8R:C -> A9R:G: adjacent_5p } 0 11 {A9R:G -> A8R:C: adjacent_3p } 0 12 {A8R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B21R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A9R:G -> B20R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {B20R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {A9R:G -> B21R:G: outward } 0 17 {B21R:G -> A9R:G: outward } 0 18 {B20R:U -> B21R:G: adjacent_5p } 0 19 {B21R:G -> B20R:U: adjacent_3p } 0 20 {B21R:G -> B22R:C: adjacent_5p upward } 0 21 {B22R:C -> B21R:G: adjacent_3p downward } 0 22 {B22R:C -> B23R:G: adjacent_5p } 0 23 {B23R:G -> B22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 16 . . 4 . . . 15 . 18 . . 5 . . 13 17 19 . 20 . 6 . 7 . . . 21 . 22 7 3 9 . . . . 23 . [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:C 0 2 A9R:G 0 3 A10R:G 0 4 B19R:U 0 5 B20R:U 0 6 B21R:G 0 7 B22R:C 0 [Edges] 0 {A7R:G -> A8R:C: adjacent_5p upward } 0 1 {A8R:C -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B22R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:C -> A9R:G: adjacent_5p } 0 5 {A9R:G -> A8R:C: adjacent_3p } 0 6 {A8R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B21R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A9R:G -> A10R:G: adjacent_5p upward } 0 9 {A10R:G -> A9R:G: adjacent_3p downward } 0 10 {A9R:G -> B20R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {B20R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {A9R:G -> B21R:G: outward } 0 13 {B21R:G -> A9R:G: outward } 0 14 {A10R:G -> B19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 15 {B19R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 16 {B19R:U -> B20R:U: adjacent_5p upward } 0 17 {B20R:U -> B19R:U: adjacent_3p downward } 0 18 {B20R:U -> B21R:G: adjacent_5p } 0 19 {B21R:G -> B20R:U: adjacent_3p } 0 20 {B21R:G -> B22R:C: adjacent_5p upward } 0 21 {B22R:C -> B21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A8R:C 0 1 A9R:G 0 2 A10R:G 0 3 A11R:U 0 4 B18R:A 0 5 B19R:U 0 6 B20R:U 0 7 B21R:G 0 [Edges] 0 {A8R:C -> A9R:G: adjacent_5p } 0 1 {A9R:G -> A8R:C: adjacent_3p } 0 2 {A8R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B21R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:G -> A10R:G: adjacent_5p upward } 0 5 {A10R:G -> A9R:G: adjacent_3p downward } 0 6 {A9R:G -> B20R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B20R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A9R:G -> B21R:G: outward } 0 9 {B21R:G -> A9R:G: outward } 0 10 {A10R:G -> A11R:U: adjacent_5p upward } 0 11 {A11R:U -> A10R:G: adjacent_3p downward } 0 12 {A10R:G -> B19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B19R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A11R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B18R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B18R:A -> B19R:U: adjacent_5p upward } 0 17 {B19R:U -> B18R:A: adjacent_3p downward } 0 18 {B19R:U -> B20R:U: adjacent_5p upward } 0 19 {B20R:U -> B19R:U: adjacent_3p downward } 0 20 {B20R:U -> B21R:G: adjacent_5p } 0 21 {B21R:G -> B20R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:G 0 2 A11R:U 0 3 A12R:A 0 4 B17R:U 0 5 B18R:A 0 6 B19R:U 0 7 B20R:U 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> B20R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B20R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A10R:G -> A11R:U: adjacent_5p upward } 0 5 {A11R:U -> A10R:G: adjacent_3p downward } 0 6 {A10R:G -> B19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B19R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A11R:U -> A12R:A: adjacent_5p } 0 9 {A12R:A -> A11R:U: adjacent_3p } 0 10 {A11R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B18R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A12R:A -> B17R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B17R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A12R:A -> B18R:A: outward } 0 15 {B18R:A -> A12R:A: outward } 0 16 {B17R:U -> B18R:A: adjacent_5p upward } 0 17 {B18R:A -> B17R:U: adjacent_3p downward } 0 18 {B18R:A -> B19R:U: adjacent_5p upward } 0 19 {B19R:U -> B18R:A: adjacent_3p downward } 0 20 {B19R:U -> B20R:U: adjacent_5p upward } 0 21 {B20R:U -> B19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:U 0 2 A12R:A 0 3 A13R:C 0 4 B16R:G 0 5 B17R:U 0 6 B18R:A 0 7 B19R:U 0 [Edges] 0 {A10R:G -> A11R:U: adjacent_5p upward } 0 1 {A11R:U -> A10R:G: adjacent_3p downward } 0 2 {A10R:G -> B19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B19R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A11R:U -> A12R:A: adjacent_5p } 0 5 {A12R:A -> A11R:U: adjacent_3p } 0 6 {A11R:U -> B18R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B18R:A -> A11R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A12R:A -> A13R:C: adjacent_5p upward } 0 9 {A13R:C -> A12R:A: adjacent_3p downward } 0 10 {A12R:A -> B17R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {B17R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {A12R:A -> B18R:A: outward } 0 13 {B18R:A -> A12R:A: outward } 0 14 {A13R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B16R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B16R:G -> B17R:U: adjacent_5p upward } 0 17 {B17R:U -> B16R:G: adjacent_3p downward } 0 18 {B17R:U -> B18R:A: adjacent_5p upward } 0 19 {B18R:A -> B17R:U: adjacent_3p downward } 0 20 {B18R:A -> B19R:U: adjacent_5p upward } 0 21 {B19R:U -> B18R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A2R:A 0 1 A3R:G 0 2 A4R:C 0 3 A5R:C 0 4 B10R:G 0 5 B11R:G 0 6 B12R:C 0 7 B13R:U 0 [Edges] 0 {A2R:A -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:A: adjacent_3p downward } 0 2 {A2R:A -> B13R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B13R:U -> A2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:C: adjacent_5p upward } 0 9 {A5R:C -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B11R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B10R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B10R:G -> B11R:G: adjacent_5p upward } 0 15 {B11R:G -> B10R:G: adjacent_3p downward } 0 16 {B11R:G -> B12R:C: adjacent_5p upward } 0 17 {B12R:C -> B11R:G: adjacent_3p downward } 0 18 {B12R:C -> B13R:U: adjacent_5p upward } 0 19 {B13R:U -> B12R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:C 0 2 A5R:C 0 3 A6R:C 0 4 B9R:G 0 5 B10R:G 0 6 B11R:G 0 7 B12R:C 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B12R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:C: adjacent_5p upward } 0 5 {A5R:C -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B11R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:C -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:C: adjacent_3p downward } 0 10 {A5R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B10R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A6R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B9R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B9R:G -> B10R:G: adjacent_5p upward } 0 15 {B10R:G -> B9R:G: adjacent_3p downward } 0 16 {B10R:G -> B11R:G: adjacent_5p upward } 0 17 {B11R:G -> B10R:G: adjacent_3p downward } 0 18 {B11R:G -> B12R:C: adjacent_5p upward } 0 19 {B12R:C -> B11R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C2R:A 0 1 C3R:G 0 2 C4R:C 0 3 C5R:C 0 4 D10R:G 0 5 D11R:G 0 6 D12R:C 0 7 D13R:U 0 [Edges] 0 {C2R:A -> C3R:G: adjacent_5p upward } 0 1 {C3R:G -> C2R:A: adjacent_3p downward } 0 2 {C2R:A -> D13R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D13R:U -> C2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C3R:G -> C4R:C: adjacent_5p upward } 0 5 {C4R:C -> C3R:G: adjacent_3p downward } 0 6 {C3R:G -> D12R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D12R:C -> C3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:C -> C5R:C: adjacent_5p upward } 0 9 {C5R:C -> C4R:C: adjacent_3p downward } 0 10 {C4R:C -> D11R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D11R:G -> C4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C5R:C -> D10R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D10R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D10R:G -> D11R:G: adjacent_5p upward } 0 15 {D11R:G -> D10R:G: adjacent_3p downward } 0 16 {D11R:G -> D12R:C: adjacent_5p upward } 0 17 {D12R:C -> D11R:G: adjacent_3p downward } 0 18 {D12R:C -> D13R:U: adjacent_5p upward } 0 19 {D13R:U -> D12R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C3R:G 0 1 C4R:C 0 2 C5R:C 0 3 C6R:C 0 4 D9R:G 0 5 D10R:G 0 6 D11R:G 0 7 D12R:C 0 [Edges] 0 {C3R:G -> C4R:C: adjacent_5p upward } 0 1 {C4R:C -> C3R:G: adjacent_3p downward } 0 2 {C3R:G -> D12R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D12R:C -> C3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C4R:C -> C5R:C: adjacent_5p upward } 0 5 {C5R:C -> C4R:C: adjacent_3p downward } 0 6 {C4R:C -> D11R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D11R:G -> C4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C5R:C -> C6R:C: adjacent_5p } 0 9 {C6R:C -> C5R:C: adjacent_3p } 0 10 {C5R:C -> D10R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D10R:G -> C5R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C6R:C -> D9R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D9R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D9R:G -> D10R:G: adjacent_5p upward } 0 15 {D10R:G -> D9R:G: adjacent_3p downward } 0 16 {D10R:G -> D11R:G: adjacent_5p upward } 0 17 {D11R:G -> D10R:G: adjacent_3p downward } 0 18 {D11R:G -> D12R:C: adjacent_5p upward } 0 19 {D12R:C -> D11R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:G 0 1 A3R:G 0 2 A4R:C 0 3 A5R:G 0 4 B13R:C 0 5 B14R:G 0 6 B15R:C 0 7 B16R:U 0 [Edges] 0 {A2R:G -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:G: adjacent_3p downward } 0 2 {A2R:G -> B16R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B16R:U -> A2R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A3R:G -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> B15R:C: pairing antiparallel cis Ww/Ww } 0 7 {B15R:C -> A3R:G: pairing antiparallel cis Ww/Ww } 0 8 {A4R:C -> A5R:G: adjacent_5p upward } 0 9 {A5R:G -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B14R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B13R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A5R:G -> B14R:G: outward } 0 15 {B14R:G -> A5R:G: outward } 0 16 {B13R:C -> B14R:G: adjacent_5p upward } 0 17 {B14R:G -> B13R:C: adjacent_3p downward } 0 18 {B14R:G -> B15R:C: adjacent_5p upward } 0 19 {B15R:C -> B14R:G: adjacent_3p downward } 0 20 {B15R:C -> B16R:U: adjacent_5p upward } 0 21 {B16R:U -> B15R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:C 0 2 A5R:G 0 3 A6R:C 0 4 B12R:G 0 5 B13R:C 0 6 B14R:G 0 7 B15R:C 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> B15R:C: pairing antiparallel cis Ww/Ww } 0 3 {B15R:C -> A3R:G: pairing antiparallel cis Ww/Ww } 0 4 {A4R:C -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B14R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> A6R:C: adjacent_5p upward } 0 9 {A6R:C -> A5R:G: adjacent_3p downward } 0 10 {A5R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B13R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:G -> B14R:G: outward } 0 13 {B14R:G -> A5R:G: outward } 0 14 {A6R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B12R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B12R:G -> B13R:C: adjacent_5p upward } 0 17 {B13R:C -> B12R:G: adjacent_3p downward } 0 18 {B13R:C -> B14R:G: adjacent_5p upward } 0 19 {B14R:G -> B13R:C: adjacent_3p downward } 0 20 {B14R:G -> B15R:C: adjacent_5p upward } 0 21 {B15R:C -> B14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:G 0 2 A6R:C 0 3 A7R:U 0 4 B11R:G 0 5 B12R:G 0 6 B13R:C 0 7 B14R:G 0 [Edges] 0 {A4R:C -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B14R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:G -> A6R:C: adjacent_5p upward } 0 5 {A6R:C -> A5R:G: adjacent_3p downward } 0 6 {A5R:G -> B13R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B13R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:G -> B14R:G: outward } 0 9 {B14R:G -> A5R:G: outward } 0 10 {A6R:C -> A7R:U: adjacent_5p upward } 0 11 {A7R:U -> A6R:C: adjacent_3p downward } 0 12 {A6R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B12R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {A7R:U -> B11R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {B11R:G -> A7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {B11R:G -> B12R:G: adjacent_5p upward } 0 17 {B12R:G -> B11R:G: adjacent_3p downward } 0 18 {B12R:G -> B13R:C: adjacent_5p upward } 0 19 {B13R:C -> B12R:G: adjacent_3p downward } 0 20 {B13R:C -> B14R:G: adjacent_5p upward } 0 21 {B14R:G -> B13R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A80R:U 0 1 A81R:G 0 2 A82R:G 0 3 A83R:G 0 4 B93R:C 0 5 B94R:C 0 6 B95R:U 0 7 B96R:G 0 [Edges] 0 {A80R:U -> A81R:G: adjacent_5p } 0 1 {A81R:G -> A80R:U: adjacent_3p } 0 2 {A80R:U -> B96R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B96R:G -> A80R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A81R:G -> A82R:G: adjacent_5p upward } 0 5 {A82R:G -> A81R:G: adjacent_3p downward } 0 6 {A81R:G -> B95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B95R:U -> A81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A81R:G -> B96R:G: outward } 0 9 {B96R:G -> A81R:G: outward } 0 10 {A82R:G -> A83R:G: adjacent_5p upward } 0 11 {A83R:G -> A82R:G: adjacent_3p downward } 0 12 {A82R:G -> B94R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B94R:C -> A82R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A83R:G -> B93R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {B93R:C -> A83R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {B93R:C -> B94R:C: adjacent_5p } 0 17 {B94R:C -> B93R:C: adjacent_3p } 0 18 {B94R:C -> B95R:U: adjacent_5p upward } 0 19 {B95R:U -> B94R:C: adjacent_3p downward } 0 20 {B95R:U -> B96R:G: adjacent_5p } 0 21 {B96R:G -> B95R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A81R:G 0 1 A82R:G 0 2 A83R:G 0 3 A84R:C 0 4 B92R:G 0 5 B93R:C 0 6 B94R:C 0 7 B95R:U 0 [Edges] 0 {A81R:G -> A82R:G: adjacent_5p upward } 0 1 {A82R:G -> A81R:G: adjacent_3p downward } 0 2 {A81R:G -> B95R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B95R:U -> A81R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A82R:G -> A83R:G: adjacent_5p upward } 0 5 {A83R:G -> A82R:G: adjacent_3p downward } 0 6 {A82R:G -> B94R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B94R:C -> A82R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A83R:G -> A84R:C: adjacent_5p upward } 0 9 {A84R:C -> A83R:G: adjacent_3p downward } 0 10 {A83R:G -> B93R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B93R:C -> A83R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A84R:C -> B92R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 13 {B92R:G -> A84R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 14 {B92R:G -> B93R:C: adjacent_5p upward } 0 15 {B93R:C -> B92R:G: adjacent_3p downward } 0 16 {B93R:C -> B94R:C: adjacent_5p } 0 17 {B94R:C -> B93R:C: adjacent_3p } 0 18 {B94R:C -> B95R:U: adjacent_5p upward } 0 19 {B95R:U -> B94R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A82R:G 0 1 A83R:G 0 2 A84R:C 0 3 A85R:G 0 4 B91R:C 0 5 B92R:G 0 6 B93R:C 0 7 B94R:C 0 [Edges] 0 {A82R:G -> A83R:G: adjacent_5p upward } 0 1 {A83R:G -> A82R:G: adjacent_3p downward } 0 2 {A82R:G -> B94R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B94R:C -> A82R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A83R:G -> A84R:C: adjacent_5p upward } 0 5 {A84R:C -> A83R:G: adjacent_3p downward } 0 6 {A83R:G -> B93R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B93R:C -> A83R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A84R:C -> A85R:G: adjacent_5p } 0 9 {A85R:G -> A84R:C: adjacent_3p } 0 10 {A84R:C -> B92R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 11 {B92R:G -> A84R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 12 {A85R:G -> B91R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B91R:C -> A85R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A85R:G -> B92R:G: outward } 0 15 {B92R:G -> A85R:G: outward } 0 16 {B91R:C -> B92R:G: adjacent_5p } 0 17 {B92R:G -> B91R:C: adjacent_3p } 0 18 {B92R:G -> B93R:C: adjacent_5p upward } 0 19 {B93R:C -> B92R:G: adjacent_3p downward } 0 20 {B93R:C -> B94R:C: adjacent_5p } 0 21 {B94R:C -> B93R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:C 0 2 A5R:U 0 3 A6R:C 0 4 B9R:G 0 5 B10R:G 0 6 B11R:G 0 7 B12R:C 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B12R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B11R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> A6R:C: adjacent_5p } 0 9 {A6R:C -> A5R:U: adjacent_3p } 0 10 {A5R:U -> B10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B10R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A6R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B9R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B9R:G -> B10R:G: adjacent_5p upward } 0 15 {B10R:G -> B9R:G: adjacent_3p downward } 0 16 {B10R:G -> B11R:G: adjacent_5p upward } 0 17 {B11R:G -> B10R:G: adjacent_3p downward } 0 18 {B11R:G -> B12R:C: adjacent_5p upward } 0 19 {B12R:C -> B11R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C3R:G 0 1 C4R:C 0 2 C5R:U 0 3 C6R:C 0 4 D9R:G 0 5 D10R:G 0 6 D11R:G 0 7 D12R:C 0 [Edges] 0 {C3R:G -> C4R:C: adjacent_5p upward } 0 1 {C4R:C -> C3R:G: adjacent_3p downward } 0 2 {C3R:G -> D12R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D12R:C -> C3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C4R:C -> C5R:U: adjacent_5p upward } 0 5 {C5R:U -> C4R:C: adjacent_3p downward } 0 6 {C4R:C -> D11R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D11R:G -> C4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C5R:U -> C6R:C: adjacent_5p } 0 9 {C6R:C -> C5R:U: adjacent_3p } 0 10 {C5R:U -> D10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {D10R:G -> C5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {C6R:C -> D9R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D9R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D9R:G -> D10R:G: adjacent_5p upward } 0 15 {D10R:G -> D9R:G: adjacent_3p downward } 0 16 {D10R:G -> D11R:G: adjacent_5p upward } 0 17 {D11R:G -> D10R:G: adjacent_3p downward } 0 18 {D11R:G -> D12R:C: adjacent_5p upward } 0 19 {D12R:C -> D11R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:A 0 1 A3R:G 0 2 A4R:C 0 3 A5R:U 0 4 B10R:G 0 5 B11R:G 0 6 B12R:C 0 7 B13R:U 0 [Edges] 0 {A2R:A -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:A: adjacent_3p downward } 0 2 {A2R:A -> B13R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B13R:U -> A2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:C: adjacent_5p upward } 0 5 {A4R:C -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:C -> A5R:U: adjacent_5p upward } 0 9 {A5R:U -> A4R:C: adjacent_3p downward } 0 10 {A4R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B11R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A5R:U -> B10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {B10R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {B10R:G -> B11R:G: adjacent_5p upward } 0 15 {B11R:G -> B10R:G: adjacent_3p downward } 0 16 {B11R:G -> B12R:C: adjacent_5p upward } 0 17 {B12R:C -> B11R:G: adjacent_3p downward } 0 18 {B12R:C -> B13R:U: adjacent_5p upward } 0 19 {B13R:U -> B12R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:C 0 2 A5R:U 0 3 A6R:C 0 4 B9R:G 0 5 B10R:G 0 6 B11R:G 0 7 B12R:C 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B12R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:C: adjacent_3p downward } 0 6 {A4R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B11R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A5R:U -> A6R:C: adjacent_5p } 0 9 {A6R:C -> A5R:U: adjacent_3p } 0 10 {A5R:U -> B10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B10R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A6R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B9R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B9R:G -> B10R:G: adjacent_5p upward } 0 15 {B10R:G -> B9R:G: adjacent_3p downward } 0 16 {B10R:G -> B11R:G: adjacent_5p upward } 0 17 {B11R:G -> B10R:G: adjacent_3p downward } 0 18 {B11R:G -> B12R:C: adjacent_5p upward } 0 19 {B12R:C -> B11R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C2R:A 0 1 C3R:G 0 2 C4R:C 0 3 C5R:U 0 4 D10R:G 0 5 D11R:G 0 6 D12R:C 0 7 D13R:U 0 [Edges] 0 {C2R:A -> C3R:G: adjacent_5p upward } 0 1 {C3R:G -> C2R:A: adjacent_3p downward } 0 2 {C2R:A -> D13R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {D13R:U -> C2R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {C3R:G -> C4R:C: adjacent_5p upward } 0 5 {C4R:C -> C3R:G: adjacent_3p downward } 0 6 {C3R:G -> D12R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {D12R:C -> C3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {C4R:C -> C5R:U: adjacent_5p upward } 0 9 {C5R:U -> C4R:C: adjacent_3p downward } 0 10 {C4R:C -> D11R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D11R:G -> C4R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C5R:U -> D10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {D10R:G -> C5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {D10R:G -> D11R:G: adjacent_5p upward } 0 15 {D11R:G -> D10R:G: adjacent_3p downward } 0 16 {D11R:G -> D12R:C: adjacent_5p upward } 0 17 {D12R:C -> D11R:G: adjacent_3p downward } 0 18 {D12R:C -> D13R:U: adjacent_5p } 0 19 {D13R:U -> D12R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 C3R:G 0 1 C4R:C 0 2 C5R:U 0 3 C6R:C 0 4 D9R:G 0 5 D10R:G 0 6 D11R:G 0 7 D12R:C 0 [Edges] 0 {C3R:G -> C4R:C: adjacent_5p upward } 0 1 {C4R:C -> C3R:G: adjacent_3p downward } 0 2 {C3R:G -> D12R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D12R:C -> C3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C4R:C -> C5R:U: adjacent_5p upward } 0 5 {C5R:U -> C4R:C: adjacent_3p downward } 0 6 {C4R:C -> D11R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D11R:G -> C4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {C5R:U -> C6R:C: adjacent_5p upward } 0 9 {C6R:C -> C5R:U: adjacent_3p downward } 0 10 {C5R:U -> D10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {D10R:G -> C5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {C6R:C -> D9R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {D9R:G -> C6R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {D9R:G -> D10R:G: adjacent_5p upward } 0 15 {D10R:G -> D9R:G: adjacent_3p downward } 0 16 {D10R:G -> D11R:G: adjacent_5p upward } 0 17 {D11R:G -> D10R:G: adjacent_3p downward } 0 18 {D11R:G -> D12R:C: adjacent_5p upward } 0 19 {D12R:C -> D11R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A2R:U 0 1 A3R:G 0 2 A4R:U 0 3 A5R:U 0 4 B12R:G 0 5 B13R:G 0 6 B14R:C 0 7 B15R:A 0 [Edges] 0 {A2R:U -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:U: adjacent_3p downward } 0 2 {A2R:U -> B15R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B15R:A -> A2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:U: adjacent_5p upward } 0 5 {A4R:U -> A3R:G: adjacent_3p downward } 0 6 {A3R:G -> B14R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B14R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A3R:G -> B15R:A: outward } 0 9 {B15R:A -> A3R:G: outward } 0 10 {A4R:U -> A5R:U: adjacent_5p upward } 0 11 {A5R:U -> A4R:U: adjacent_3p downward } 0 12 {A4R:U -> B13R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {B13R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {A5R:U -> B12R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 15 {B12R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 16 {B12R:G -> B13R:G: adjacent_5p upward } 0 17 {B13R:G -> B12R:G: adjacent_3p downward } 0 18 {B13R:G -> B14R:C: adjacent_5p upward } 0 19 {B14R:C -> B13R:G: adjacent_3p downward } 0 20 {B14R:C -> B15R:A: adjacent_5p upward } 0 21 {B15R:A -> B14R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:U 0 2 A5R:U 0 3 A6R:U 0 4 B11R:A 0 5 B12R:G 0 6 B13R:G 0 7 B14R:C 0 [Edges] 0 {A3R:G -> A4R:U: adjacent_5p upward } 0 1 {A4R:U -> A3R:G: adjacent_3p downward } 0 2 {A3R:G -> B14R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B14R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:U -> A5R:U: adjacent_5p upward } 0 5 {A5R:U -> A4R:U: adjacent_3p downward } 0 6 {A4R:U -> B13R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B13R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A5R:U -> A6R:U: adjacent_5p upward } 0 9 {A6R:U -> A5R:U: adjacent_3p downward } 0 10 {A5R:U -> B12R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 11 {B12R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 12 {A6R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B11R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B11R:A -> B12R:G: adjacent_5p upward } 0 15 {B12R:G -> B11R:A: adjacent_3p downward } 0 16 {B12R:G -> B13R:G: adjacent_5p upward } 0 17 {B13R:G -> B12R:G: adjacent_3p downward } 0 18 {B13R:G -> B14R:C: adjacent_5p upward } 0 19 {B14R:C -> B13R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A4R:U 0 1 A5R:U 0 2 A6R:U 0 3 A7R:A 0 4 B10R:U 0 5 B11R:A 0 6 B12R:G 0 7 B13R:G 0 [Edges] 0 {A4R:U -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:U: adjacent_3p downward } 0 2 {A4R:U -> B13R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B13R:G -> A4R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A5R:U -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:U: adjacent_3p downward } 0 6 {A5R:U -> B12R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {B12R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {A6R:U -> A7R:A: adjacent_5p upward } 0 9 {A7R:A -> A6R:U: adjacent_3p downward } 0 10 {A6R:U -> B11R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B11R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:A -> B10R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B10R:U -> A7R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A7R:A -> B11R:A: outward } 0 15 {B11R:A -> A7R:A: outward } 0 16 {B10R:U -> B11R:A: adjacent_5p upward } 0 17 {B11R:A -> B10R:U: adjacent_3p downward } 0 18 {B11R:A -> B12R:G: adjacent_5p upward } 0 19 {B12R:G -> B11R:A: adjacent_3p downward } 0 20 {B12R:G -> B13R:G: adjacent_5p upward } 0 21 {B13R:G -> B12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 B2R:G 0 1 B3R:U 0 2 B4R:G 0 3 B5R:U 0 4 B23R:A 0 5 B24R:C 0 6 B25R:A 0 7 B26R:C 0 [Edges] 0 {B2R:G -> B3R:U: adjacent_5p upward } 0 1 {B3R:U -> B2R:G: adjacent_3p downward } 0 2 {B2R:G -> B26R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B26R:C -> B2R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B3R:U -> B4R:G: adjacent_5p upward } 0 5 {B4R:G -> B3R:U: adjacent_3p downward } 0 6 {B3R:U -> B25R:A: pairing antiparallel cis XX Ww/Wh } 0 7 {B25R:A -> B3R:U: pairing antiparallel cis XX Wh/Ww } 0 8 {B4R:G -> B5R:U: adjacent_5p upward } 0 9 {B5R:U -> B4R:G: adjacent_3p downward } 0 10 {B4R:G -> B24R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {B24R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {B4R:G -> B25R:A: outward } 0 13 {B25R:A -> B4R:G: outward } 0 14 {B5R:U -> B23R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B23R:A -> B5R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B23R:A -> B24R:C: adjacent_5p upward } 0 17 {B24R:C -> B23R:A: adjacent_3p downward } 0 18 {B24R:C -> B25R:A: adjacent_5p upward } 0 19 {B25R:A -> B24R:C: adjacent_3p downward } 0 20 {B25R:A -> B26R:C: adjacent_5p upward } 0 21 {B26R:C -> B25R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 12 . 3 . . 9 . 14 . . . 4 . . . 15 . 16 . . 5 . . 11 . 17 . 18 . 6 . 7 13 . . 19 . 20 7 3 . . . . . 21 . [GraphModel] [Vertices] 0 B3R:U 0 1 B4R:G 0 2 B5R:U 0 3 B6R:C 0 4 B22R:G 0 5 B23R:A 0 6 B24R:C 0 7 B25R:A 0 [Edges] 0 {B3R:U -> B4R:G: adjacent_5p upward } 0 1 {B4R:G -> B3R:U: adjacent_3p downward } 0 2 {B3R:U -> B25R:A: pairing antiparallel cis XX Ww/Wh } 0 3 {B25R:A -> B3R:U: pairing antiparallel cis XX Wh/Ww } 0 4 {B4R:G -> B5R:U: adjacent_5p upward } 0 5 {B5R:U -> B4R:G: adjacent_3p downward } 0 6 {B4R:G -> B24R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B24R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B4R:G -> B25R:A: outward } 0 9 {B25R:A -> B4R:G: outward } 0 10 {B5R:U -> B6R:C: adjacent_5p upward } 0 11 {B6R:C -> B5R:U: adjacent_3p downward } 0 12 {B5R:U -> B23R:A: pairing antiparallel cis XX Ww/Ww } 0 13 {B23R:A -> B5R:U: pairing antiparallel cis XX Ww/Ww } 0 14 {B6R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {B22R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {B22R:G -> B23R:A: adjacent_5p upward } 0 17 {B23R:A -> B22R:G: adjacent_3p downward } 0 18 {B23R:A -> B24R:C: adjacent_5p upward } 0 19 {B24R:C -> B23R:A: adjacent_3p downward } 0 20 {B24R:C -> B25R:A: adjacent_5p upward } 0 21 {B25R:A -> B24R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 B4R:G 0 1 B5R:U 0 2 B6R:C 0 3 B7R:U 0 4 B21R:G 0 5 B22R:G 0 6 B23R:A 0 7 B24R:C 0 [Edges] 0 {B4R:G -> B5R:U: adjacent_5p upward } 0 1 {B5R:U -> B4R:G: adjacent_3p downward } 0 2 {B4R:G -> B24R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B24R:C -> B4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B5R:U -> B6R:C: adjacent_5p upward } 0 5 {B6R:C -> B5R:U: adjacent_3p downward } 0 6 {B5R:U -> B23R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B23R:A -> B5R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B6R:C -> B7R:U: adjacent_5p upward } 0 9 {B7R:U -> B6R:C: adjacent_3p downward } 0 10 {B6R:C -> B22R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B22R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B7R:U -> B21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 13 {B21R:G -> B7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 14 {B21R:G -> B22R:G: adjacent_5p upward } 0 15 {B22R:G -> B21R:G: adjacent_3p downward } 0 16 {B22R:G -> B23R:A: adjacent_5p upward } 0 17 {B23R:A -> B22R:G: adjacent_3p downward } 0 18 {B23R:A -> B24R:C: adjacent_5p upward } 0 19 {B24R:C -> B23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . MOLECULE: [GraphModel] [Vertices] 0 A3R:U 0 1 A4R:G 0 2 A5R:A 0 3 A6R:U 0 4 B14R:A 0 5 B15R:U 0 6 B16R:C 0 7 B17R:G 0 [Edges] 0 {A3R:U -> A4R:G: adjacent_5p upward } 0 1 {A4R:G -> A3R:U: adjacent_3p downward } 0 2 {A3R:U -> B17R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B17R:G -> A3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A4R:G -> A5R:A: adjacent_5p upward } 0 5 {A5R:A -> A4R:G: adjacent_3p downward } 0 6 {A4R:G -> B16R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B16R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A4R:G -> B17R:G: outward } 0 9 {B17R:G -> A4R:G: outward } 0 10 {A5R:A -> A6R:U: adjacent_5p upward } 0 11 {A6R:U -> A5R:A: adjacent_3p downward } 0 12 {A5R:A -> B15R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {B15R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {A6R:U -> B14R:A: pairing antiparallel cis XX Ww/Ww } 0 15 {B14R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 16 {B14R:A -> B15R:U: adjacent_5p upward } 0 17 {B15R:U -> B14R:A: adjacent_3p downward } 0 18 {B15R:U -> B16R:C: adjacent_5p upward } 0 19 {B16R:C -> B15R:U: adjacent_3p downward } 0 20 {B16R:C -> B17R:G: adjacent_5p } 0 21 {B17R:G -> B16R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A6R:U 0 3 A7R:C 0 4 B13R:G 0 5 B14R:A 0 6 B15R:U 0 7 B16R:C 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B16R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B16R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> A6R:U: adjacent_5p upward } 0 5 {A6R:U -> A5R:A: adjacent_3p downward } 0 6 {A5R:A -> B15R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B15R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:U -> A7R:C: adjacent_5p upward } 0 9 {A7R:C -> A6R:U: adjacent_3p downward } 0 10 {A6R:U -> B14R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {B14R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A7R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {B13R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {B13R:G -> B14R:A: adjacent_5p upward } 0 15 {B14R:A -> B13R:G: adjacent_3p downward } 0 16 {B14R:A -> B15R:U: adjacent_5p upward } 0 17 {B15R:U -> B14R:A: adjacent_3p downward } 0 18 {B15R:U -> B16R:C: adjacent_5p upward } 0 19 {B16R:C -> B15R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 . . . 4 . . . 13 . 14 . . 5 . . 11 . 15 . 16 . 6 . 7 . . . 17 . 18 7 3 . . . . . 19 . [GraphModel] [Vertices] 0 A5R:A 0 1 A6R:U 0 2 A7R:C 0 3 A8R:G 0 4 B12R:U 0 5 B13R:G 0 6 B14R:A 0 7 B15R:U 0 [Edges] 0 {A5R:A -> A6R:U: adjacent_5p upward } 0 1 {A6R:U -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> B15R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B15R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:U -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:U: adjacent_3p downward } 0 6 {A6R:U -> B14R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B14R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A7R:C -> A8R:G: adjacent_5p upward } 0 9 {A8R:G -> A7R:C: adjacent_3p downward } 0 10 {A7R:C -> B13R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B13R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A8R:G -> B12R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B12R:U -> A8R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A8R:G -> B13R:G: outward } 0 15 {B13R:G -> A8R:G: outward } 0 16 {B12R:U -> B13R:G: adjacent_5p } 0 17 {B13R:G -> B12R:U: adjacent_3p } 0 18 {B13R:G -> B14R:A: adjacent_5p upward } 0 19 {B14R:A -> B13R:G: adjacent_3p downward } 0 20 {B14R:A -> B15R:U: adjacent_5p upward } 0 21 {B15R:U -> B14R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 . 2 . 5 . 8 . 10 . . 3 . . 9 . 12 14 . . 4 . . . 13 . 16 . . 5 . . 11 15 17 . 18 . 6 . 7 . . . 19 . 20 7 3 . . . . . 21 . MOLECULE: [GraphModel] [Vertices] 0 R2R:C 0 1 R3R:G 0 2 R4R:C 0 3 R5R:C 0 4 R10R:G 0 5 R11R:G 0 6 R12R:C 0 7 R13R:G 0 [Edges] 0 {R2R:C -> R3R:G: adjacent_5p } 0 1 {R3R:G -> R2R:C: adjacent_3p } 0 2 {R2R:C -> R13R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R13R:G -> R2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R3R:G -> R4R:C: adjacent_5p upward } 0 5 {R4R:C -> R3R:G: adjacent_3p downward } 0 6 {R3R:G -> R12R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {R12R:C -> R3R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {R3R:G -> R13R:G: outward } 0 9 {R13R:G -> R3R:G: outward } 0 10 {R4R:C -> R5R:C: adjacent_5p upward } 0 11 {R5R:C -> R4R:C: adjacent_3p downward } 0 12 {R4R:C -> R11R:G: pairing antiparallel cis XIX Ww/Ww } 0 13 {R11R:G -> R4R:C: pairing antiparallel cis XIX Ww/Ww } 0 14 {R5R:C -> R10R:G: pairing antiparallel cis XIX Ww/Ww } 0 15 {R10R:G -> R5R:C: pairing antiparallel cis XIX Ww/Ww } 0 16 {R10R:G -> R11R:G: adjacent_5p upward } 0 17 {R11R:G -> R10R:G: adjacent_3p downward } 0 18 {R11R:G -> R12R:C: adjacent_5p upward } 0 19 {R12R:C -> R11R:G: adjacent_3p downward } 0 20 {R12R:C -> R13R:G: adjacent_5p upward } 0 21 {R13R:G -> R12R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 6 7 0 . 0 . . . . . 2 1 1 . 4 . . . 6 8 2 . 5 . 10 . 12 . . 3 . . 11 . 14 . . . 4 . . . 15 . 16 . . 5 . . 13 . 17 . 18 . 6 . 7 . . . 19 . 20 7 3 9 . . . . 21 .