MOLECULE: [GraphModel] [Vertices] 0 A15R:U 0 1 A16R:A 0 2 A17R:A 0 3 A29R:C 0 [Edges] 0 {A15R:U -> A16R:A: adjacent_5p } 0 1 {A16R:A -> A15R:U: adjacent_3p } 0 2 {A15R:U -> A29R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {A29R:C -> A15R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A16R:A -> A17R:A: adjacent_5p upward } 0 5 {A17R:A -> A16R:A: adjacent_3p downward } 0 6 {A17R:A -> A29R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 7 {A29R:C -> A17R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . [GraphModel] [Vertices] 0 A27R:U 0 1 A28R:G 0 2 A29R:C 0 3 A15R:U 0 [Edges] 0 {A15R:U -> A27R:U: pairing antiparallel trans 81 Hh/Ww } 0 1 {A27R:U -> A15R:U: pairing antiparallel trans 81 Ww/Hh } 0 2 {A15R:U -> A29R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {A29R:C -> A15R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A27R:U -> A28R:G: adjacent_5p } 0 5 {A28R:G -> A27R:U: adjacent_3p } 0 6 {A28R:G -> A29R:C: adjacent_5p upward } 0 7 {A29R:C -> A28R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . [GraphModel] [Vertices] 0 C215R:U 0 1 C216R:A 0 2 C217R:A 0 3 C229R:C 0 [Edges] 0 {C215R:U -> C216R:A: adjacent_5p } 0 1 {C216R:A -> C215R:U: adjacent_3p } 0 2 {C215R:U -> C229R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {C229R:C -> C215R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {C216R:A -> C217R:A: adjacent_5p upward } 0 5 {C217R:A -> C216R:A: adjacent_3p downward } 0 6 {C217R:A -> C229R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 7 {C229R:C -> C217R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . [GraphModel] [Vertices] 0 C227R:U 0 1 C228R:G 0 2 C229R:C 0 3 C215R:U 0 [Edges] 0 {C215R:U -> C227R:U: pairing antiparallel trans 81 Hh/Ww } 0 1 {C227R:U -> C215R:U: pairing antiparallel trans 81 Ww/Hh } 0 2 {C215R:U -> C229R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {C229R:C -> C215R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {C227R:U -> C228R:G: adjacent_5p } 0 5 {C228R:G -> C227R:U: adjacent_3p } 0 6 {C228R:G -> C229R:C: adjacent_5p upward } 0 7 {C229R:C -> C228R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . [GraphModel] [Vertices] 0 E415R:U 0 1 E416R:A 0 2 E417R:A 0 3 E429R:C 0 [Edges] 0 {E415R:U -> E416R:A: adjacent_5p } 0 1 {E416R:A -> E415R:U: adjacent_3p } 0 2 {E415R:U -> E429R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {E429R:C -> E415R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {E416R:A -> E417R:A: adjacent_5p upward } 0 5 {E417R:A -> E416R:A: adjacent_3p downward } 0 6 {E417R:A -> E429R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 7 {E429R:C -> E417R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . [GraphModel] [Vertices] 0 E427R:U 0 1 E428R:G 0 2 E429R:C 0 3 E415R:U 0 [Edges] 0 {E415R:U -> E427R:U: pairing antiparallel trans 81 Hh/Ww } 0 1 {E427R:U -> E415R:U: pairing antiparallel trans 81 Ww/Hh } 0 2 {E415R:U -> E429R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {E429R:C -> E415R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {E427R:U -> E428R:G: adjacent_5p } 0 5 {E428R:G -> E427R:U: adjacent_3p } 0 6 {E428R:G -> E429R:C: adjacent_5p upward } 0 7 {E429R:C -> E428R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . [GraphModel] [Vertices] 0 G615R:U 0 1 G616R:A 0 2 G617R:A 0 3 G629R:C 0 [Edges] 0 {G615R:U -> G616R:A: adjacent_5p } 0 1 {G616R:A -> G615R:U: adjacent_3p } 0 2 {G615R:U -> G629R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {G629R:C -> G615R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {G616R:A -> G617R:A: adjacent_5p upward } 0 5 {G617R:A -> G616R:A: adjacent_3p downward } 0 6 {G617R:A -> G629R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 7 {G629R:C -> G617R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . [GraphModel] [Vertices] 0 G627R:U 0 1 G628R:G 0 2 G629R:C 0 3 G615R:U 0 [Edges] 0 {G615R:U -> G627R:U: pairing antiparallel trans 81 Hh/Ww } 0 1 {G627R:U -> G615R:U: pairing antiparallel trans 81 Ww/Hh } 0 2 {G615R:U -> G629R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {G629R:C -> G615R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {G627R:U -> G628R:G: adjacent_5p } 0 5 {G628R:G -> G627R:U: adjacent_3p } 0 6 {G627R:U -> G629R:C: pairing parallel cis one_hbond 99 Ws/Hw } 0 7 {G629R:C -> G627R:U: pairing parallel cis one_hbond 99 Hw/Ws } 0 8 {G628R:G -> G629R:C: adjacent_5p upward } 0 9 {G629R:C -> G628R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 0 . 4 6 1 1 5 . 8 . 2 7 9 . 3 3 0 . 2 . MOLECULE: [GraphModel] [Vertices] 0 A215R:U 0 1 A216R:A 0 2 A217R:A 0 3 A229R:C 0 [Edges] 0 {A215R:U -> A216R:A: adjacent_5p } 0 1 {A216R:A -> A215R:U: adjacent_3p } 0 2 {A215R:U -> A229R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {A229R:C -> A215R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A216R:A -> A217R:A: adjacent_5p upward } 0 5 {A217R:A -> A216R:A: adjacent_3p downward } 0 6 {A217R:A -> A229R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 7 {A229R:C -> A217R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . [GraphModel] [Vertices] 0 A227R:U 0 1 A228R:G 0 2 A229R:C 0 3 A215R:U 0 [Edges] 0 {A215R:U -> A227R:U: pairing antiparallel trans 81 Hh/Ww } 0 1 {A227R:U -> A215R:U: pairing antiparallel trans 81 Ww/Hh } 0 2 {A215R:U -> A229R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {A229R:C -> A215R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A227R:U -> A228R:G: adjacent_5p } 0 5 {A228R:G -> A227R:U: adjacent_3p } 0 6 {A227R:U -> A229R:C: pairing parallel cis one_hbond 99 Ws/Hw } 0 7 {A229R:C -> A227R:U: pairing parallel cis one_hbond 99 Hw/Ws } 0 8 {A228R:G -> A229R:C: adjacent_5p upward } 0 9 {A229R:C -> A228R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 0 . 4 6 1 1 5 . 8 . 2 7 9 . 3 3 0 . 2 . [GraphModel] [Vertices] 0 B315R:U 0 1 B316R:A 0 2 B317R:A 0 3 B329R:C 0 [Edges] 0 {B315R:U -> B316R:A: adjacent_5p } 0 1 {B316R:A -> B315R:U: adjacent_3p } 0 2 {B315R:U -> B329R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B329R:C -> B315R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {B316R:A -> B317R:A: adjacent_5p upward } 0 5 {B317R:A -> B316R:A: adjacent_3p downward } 0 6 {B317R:A -> B329R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 7 {B329R:C -> B317R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . [GraphModel] [Vertices] 0 B327R:U 0 1 B328R:G 0 2 B329R:C 0 3 B315R:U 0 [Edges] 0 {B315R:U -> B327R:U: pairing antiparallel trans 81 Hh/Ww } 0 1 {B327R:U -> B315R:U: pairing antiparallel trans 81 Ww/Hh } 0 2 {B315R:U -> B329R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B329R:C -> B315R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {B327R:U -> B328R:G: adjacent_5p } 0 5 {B328R:G -> B327R:U: adjacent_3p } 0 6 {B327R:U -> B329R:C: pairing parallel cis one_hbond 99 Ws/Hw } 0 7 {B329R:C -> B327R:U: pairing parallel cis one_hbond 99 Hw/Ws } 0 8 {B328R:G -> B329R:C: adjacent_5p upward } 0 9 {B329R:C -> B328R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 0 . 4 6 1 1 5 . 8 . 2 7 9 . 3 3 0 . 2 . [GraphModel] [Vertices] 0 C415R:U 0 1 C416R:A 0 2 C417R:A 0 3 C429R:C 0 [Edges] 0 {C415R:U -> C416R:A: adjacent_5p } 0 1 {C416R:A -> C415R:U: adjacent_3p } 0 2 {C415R:U -> C429R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {C429R:C -> C415R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {C416R:A -> C417R:A: adjacent_5p upward } 0 5 {C417R:A -> C416R:A: adjacent_3p downward } 0 6 {C417R:A -> C429R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 7 {C429R:C -> C417R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . [GraphModel] [Vertices] 0 C427R:U 0 1 C428R:G 0 2 C429R:C 0 3 C415R:U 0 [Edges] 0 {C415R:U -> C427R:U: pairing antiparallel trans one_hbond Hh/Wh } 0 1 {C427R:U -> C415R:U: pairing antiparallel trans one_hbond Wh/Hh } 0 2 {C415R:U -> C429R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {C429R:C -> C415R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {C427R:U -> C428R:G: adjacent_5p } 0 5 {C428R:G -> C427R:U: adjacent_3p } 0 6 {C427R:U -> C429R:C: pairing parallel cis one_hbond 99 Ws/Hw } 0 7 {C429R:C -> C427R:U: pairing parallel cis one_hbond 99 Hw/Ws } 0 8 {C428R:G -> C429R:C: adjacent_5p upward } 0 9 {C429R:C -> C428R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 0 . 4 6 1 1 5 . 8 . 2 7 9 . 3 3 0 . 2 . [GraphModel] [Vertices] 0 D515R:U 0 1 D516R:A 0 2 D517R:A 0 3 D529R:C 0 [Edges] 0 {D515R:U -> D516R:A: adjacent_5p } 0 1 {D516R:A -> D515R:U: adjacent_3p } 0 2 {D515R:U -> D529R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {D529R:C -> D515R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {D516R:A -> D517R:A: adjacent_5p upward } 0 5 {D517R:A -> D516R:A: adjacent_3p downward } 0 6 {D517R:A -> D529R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 7 {D529R:C -> D517R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . [GraphModel] [Vertices] 0 D527R:U 0 1 D528R:G 0 2 D529R:C 0 3 D515R:U 0 [Edges] 0 {D515R:U -> D527R:U: pairing antiparallel trans 81 Hh/Ww } 0 1 {D527R:U -> D515R:U: pairing antiparallel trans 81 Ww/Hh } 0 2 {D515R:U -> D529R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {D529R:C -> D515R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {D527R:U -> D528R:G: adjacent_5p } 0 5 {D528R:G -> D527R:U: adjacent_3p } 0 6 {D528R:G -> D529R:C: adjacent_5p upward } 0 7 {D529R:C -> D528R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . [GraphModel] [Vertices] 0 E115R:U 0 1 E116R:A 0 2 E117R:A 0 3 E129R:C 0 [Edges] 0 {E115R:U -> E116R:A: adjacent_5p } 0 1 {E116R:A -> E115R:U: adjacent_3p } 0 2 {E115R:U -> E129R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {E129R:C -> E115R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {E116R:A -> E117R:A: adjacent_5p upward } 0 5 {E117R:A -> E116R:A: adjacent_3p downward } 0 6 {E117R:A -> E129R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 7 {E129R:C -> E117R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . [GraphModel] [Vertices] 0 E127R:U 0 1 E128R:G 0 2 E129R:C 0 3 E115R:U 0 [Edges] 0 {E115R:U -> E127R:U: pairing antiparallel trans 81 Hh/Ww } 0 1 {E127R:U -> E115R:U: pairing antiparallel trans 81 Ww/Hh } 0 2 {E115R:U -> E129R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {E129R:C -> E115R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {E127R:U -> E128R:G: adjacent_5p } 0 5 {E128R:G -> E127R:U: adjacent_3p } 0 6 {E128R:G -> E129R:C: adjacent_5p upward } 0 7 {E129R:C -> E128R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . MOLECULE: [GraphModel] [Vertices] 0 A20R:C 0 1 A21R:G 0 2 A22R:A 0 3 A9R:G 0 [Edges] 0 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 1 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 2 {A9R:G -> A22R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {A22R:A -> A9R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {A20R:C -> A21R:G: adjacent_5p } 0 5 {A21R:G -> A20R:C: adjacent_3p } 0 6 {A21R:G -> A22R:A: adjacent_5p } 0 7 {A22R:A -> A21R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . MOLECULE: [GraphModel] [Vertices] 0 A12R:C 0 1 A13R:U 0 2 A14R:U 0 3 A17R:G 0 [Edges] 0 {A12R:C -> A13R:U: adjacent_5p upward } 0 1 {A13R:U -> A12R:C: adjacent_3p downward } 0 2 {A12R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:U -> A14R:U: adjacent_5p } 0 5 {A14R:U -> A13R:U: adjacent_3p } 0 6 {A14R:U -> A17R:G: pairing parallel trans one_hbond 89 Hw/Sw } 0 7 {A17R:G -> A14R:U: pairing parallel trans one_hbond 89 Sw/Hw } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . MOLECULE: [GraphModel] [Vertices] 0 A2102R:G 0 1 A2103R:A 0 2 A2104R:C 0 3 A2486R:A 0 [Edges] 0 {A2102R:G -> A2103R:A: adjacent_5p } 0 1 {A2103R:A -> A2102R:G: adjacent_3p } 0 2 {A2102R:G -> A2486R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A2486R:A -> A2102R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A2103R:A -> A2104R:C: adjacent_5p } 0 5 {A2104R:C -> A2103R:A: adjacent_3p } 0 6 {A2104R:C -> A2486R:A: pairing antiparallel cis one_hbond Ws/Bs } 0 7 {A2486R:A -> A2104R:C: pairing antiparallel cis one_hbond Bs/Ws } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . [GraphModel] [Vertices] 0 A2257R:G 0 1 A2258R:A 0 2 A2259R:C 0 3 A2244R:A 0 [Edges] 0 {A2244R:A -> A2257R:G: pairing antiparallel trans XI Hh/Ss } 0 1 {A2257R:G -> A2244R:A: pairing antiparallel trans XI Ss/Hh } 0 2 {A2244R:A -> A2258R:A: outward } 0 3 {A2258R:A -> A2244R:A: outward } 0 4 {A2244R:A -> A2259R:C: pairing parallel trans one_hbond 70 Ww/Hw } 0 5 {A2259R:C -> A2244R:A: pairing parallel trans one_hbond 70 Hw/Ww } 0 6 {A2257R:G -> A2258R:A: adjacent_5p } 0 7 {A2258R:A -> A2257R:G: adjacent_3p } 0 8 {A2258R:A -> A2259R:C: adjacent_5p } 0 9 {A2259R:C -> A2258R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 6 . 1 1 7 . 8 3 2 . 9 . 5 3 0 2 4 . [GraphModel] [Vertices] 0 A2378R:U 0 1 A2379R:G 0 2 A2380R:A 0 3 A2321R:A 0 [Edges] 0 {A2321R:A -> A2378R:U: pairing parallel trans XXI Ww/Ws } 0 1 {A2378R:U -> A2321R:A: pairing parallel trans XXI Ws/Ww } 0 2 {A2321R:A -> A2380R:A: pairing parallel trans II Hh/Hh } 0 3 {A2380R:A -> A2321R:A: pairing parallel trans II Hh/Hh } 0 4 {A2378R:U -> A2379R:G: adjacent_5p } 0 5 {A2379R:G -> A2378R:U: adjacent_3p } 0 6 {A2379R:G -> A2380R:A: adjacent_5p } 0 7 {A2380R:A -> A2379R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . [GraphModel] [Vertices] 0 A2525R:G 0 1 A2526R:C 0 2 A2527R:U 0 3 A2495R:U 0 [Edges] 0 {A2495R:U -> A2525R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 1 {A2525R:G -> A2495R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 2 {A2495R:U -> A2527R:U: pairing antiparallel cis XVI Ws/Ww } 0 3 {A2527R:U -> A2495R:U: pairing antiparallel cis XVI Ww/Ws } 0 4 {A2525R:G -> A2526R:C: adjacent_5p } 0 5 {A2526R:C -> A2525R:G: adjacent_3p } 0 6 {A2525R:G -> A2527R:U: pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {A2527R:U -> A2525R:G: pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {A2526R:C -> A2527R:U: adjacent_5p } 0 9 {A2527R:U -> A2526R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 4 6 1 1 5 . 8 . 2 7 9 . 3 3 0 . 2 . MOLECULE: [GraphModel] [Vertices] 0 E752R:G 0 1 E753R:A 0 2 E754R:C 0 3 D654R:G 0 [Edges] 0 {D654R:G -> E752R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 1 {E752R:G -> D654R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 2 {D654R:G -> E753R:A: outward } 0 3 {E753R:A -> D654R:G: outward } 0 4 {D654R:G -> E754R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {E754R:C -> D654R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {E752R:G -> E753R:A: adjacent_5p } 0 7 {E753R:A -> E752R:G: adjacent_3p } 0 8 {E753R:A -> E754R:C: adjacent_5p } 0 9 {E754R:C -> E753R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 6 . 1 1 7 . 8 3 2 . 9 . 5 3 0 2 4 . [GraphModel] [Vertices] 0 J752R:G 0 1 J753R:A 0 2 J754R:C 0 3 I654R:G 0 [Edges] 0 {I654R:G -> J752R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 1 {J752R:G -> I654R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 2 {I654R:G -> J753R:A: outward } 0 3 {J753R:A -> I654R:G: outward } 0 4 {I654R:G -> J754R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {J754R:C -> I654R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {J752R:G -> J753R:A: adjacent_5p } 0 7 {J753R:A -> J752R:G: adjacent_3p } 0 8 {J753R:A -> J754R:C: adjacent_5p } 0 9 {J754R:C -> J753R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 6 . 1 1 7 . 8 3 2 . 9 . 5 3 0 2 4 . MOLECULE: [GraphModel] [Vertices] 0 D24R:A 0 1 D25R:U 0 2 D26R:A 0 3 D13R:U 0 [Edges] 0 {D13R:U -> D24R:A: pairing antiparallel cis XX Ww/Ww } 0 1 {D24R:A -> D13R:U: pairing antiparallel cis XX Ww/Ww } 0 2 {D13R:U -> D26R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 3 {D26R:A -> D13R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 4 {D24R:A -> D25R:U: adjacent_5p upward } 0 5 {D25R:U -> D24R:A: adjacent_3p downward } 0 6 {D25R:U -> D26R:A: adjacent_5p } 0 7 {D26R:A -> D25R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . MOLECULE: [GraphModel] [Vertices] 0 A2R:U 0 1 A3R:G 0 2 A4R:U 0 3 B17R:A 0 [Edges] 0 {A2R:U -> A3R:G: adjacent_5p upward } 0 1 {A3R:G -> A2R:U: adjacent_3p downward } 0 2 {A2R:U -> B17R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B17R:A -> A2R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A3R:G -> A4R:U: adjacent_5p } 0 5 {A4R:U -> A3R:G: adjacent_3p } 0 6 {A3R:G -> B17R:A: outward } 0 7 {B17R:A -> A3R:G: outward } 0 8 {A4R:U -> B17R:A: pairing antiparallel cis 43 Ww/Ss } 0 9 {B17R:A -> A4R:U: pairing antiparallel cis 43 Ss/Ww } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 6 2 . 5 . 8 3 3 7 9 . [GraphModel] [Vertices] 0 B11R:U 0 1 B12R:G 0 2 B13R:U 0 3 A8R:A 0 [Edges] 0 {A8R:A -> B11R:U: pairing antiparallel cis XX Ww/Ww } 0 1 {B11R:U -> A8R:A: pairing antiparallel cis XX Ww/Ww } 0 2 {A8R:A -> B12R:G: outward } 0 3 {B12R:G -> A8R:A: outward } 0 4 {A8R:A -> B13R:U: pairing antiparallel cis one_hbond 43 Ss/Ww } 0 5 {B13R:U -> A8R:A: pairing antiparallel cis one_hbond 43 Ww/Ss } 0 6 {B11R:U -> B12R:G: adjacent_5p upward } 0 7 {B12R:G -> B11R:U: adjacent_3p downward } 0 8 {B12R:G -> B13R:U: adjacent_5p } 0 9 {B13R:U -> B12R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 6 . 1 1 7 . 8 3 2 . 9 . 5 3 0 2 4 . [GraphModel] [Vertices] 0 C20R:U 0 1 C21R:G 0 2 C22R:U 0 3 D35R:A 0 [Edges] 0 {C20R:U -> C21R:G: adjacent_5p upward } 0 1 {C21R:G -> C20R:U: adjacent_3p downward } 0 2 {C20R:U -> D35R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D35R:A -> C20R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {C21R:G -> C22R:U: adjacent_5p } 0 5 {C22R:U -> C21R:G: adjacent_3p } 0 6 {C21R:G -> D35R:A: outward } 0 7 {D35R:A -> C21R:G: outward } 0 8 {C22R:U -> D35R:A: pairing antiparallel cis 43 Ww/Ss } 0 9 {D35R:A -> C22R:U: pairing antiparallel cis 43 Ss/Ww } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 6 2 . 5 . 8 3 3 7 9 . [GraphModel] [Vertices] 0 D29R:U 0 1 D30R:G 0 2 D31R:U 0 3 C26R:A 0 [Edges] 0 {C26R:A -> D29R:U: pairing antiparallel cis XX Ww/Ww } 0 1 {D29R:U -> C26R:A: pairing antiparallel cis XX Ww/Ww } 0 2 {C26R:A -> D30R:G: outward } 0 3 {D30R:G -> C26R:A: outward } 0 4 {C26R:A -> D31R:U: pairing antiparallel cis 43 Ss/Ww } 0 5 {D31R:U -> C26R:A: pairing antiparallel cis 43 Ww/Ss } 0 6 {D29R:U -> D30R:G: adjacent_5p upward } 0 7 {D30R:G -> D29R:U: adjacent_3p downward } 0 8 {D30R:G -> D31R:U: adjacent_5p } 0 9 {D31R:U -> D30R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 6 . 1 1 7 . 8 3 2 . 9 . 5 3 0 2 4 . MOLECULE: [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:G 0 2 A11R:A 0 3 B30R:G 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p } 0 1 {A10R:G -> A9R:G: adjacent_3p } 0 2 {A9R:G -> A11R:A: downward } 0 3 {A11R:A -> A9R:G: upward } 0 4 {A9R:G -> B30R:G: pairing parallel cis one_hbond 111 Hh/Ww } 0 5 {B30R:G -> A9R:G: pairing parallel cis one_hbond 111 Ww/Hh } 0 6 {A10R:G -> A11R:A: adjacent_5p upward } 0 7 {A11R:A -> A10R:G: adjacent_3p downward } 0 8 {A11R:A -> B30R:G: pairing parallel cis one_hbond 66 Wh/Wh } 0 9 {B30R:G -> A11R:A: pairing parallel cis one_hbond 66 Wh/Wh } 0 [Adjacency matrix] 0 1 2 3 0 . 0 2 4 1 1 . 6 . 2 3 7 . 8 3 5 . 9 . MOLECULE: [GraphModel] [Vertices] 0 B15R:C 0 1 B16R:U 0 2 B17R:A 0 3 B6R:G 0 [Edges] 0 {B6R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 1 {B15R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 2 {B6R:G -> B17R:A: pairing antiparallel cis one_hbond Ss/Bs } 0 3 {B17R:A -> B6R:G: pairing antiparallel cis one_hbond Bs/Ss } 0 4 {B15R:C -> B16R:U: adjacent_5p upward } 0 5 {B16R:U -> B15R:C: adjacent_3p downward } 0 6 {B16R:U -> B17R:A: adjacent_5p } 0 7 {B17R:A -> B16R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . MOLECULE: [GraphModel] [Vertices] 0 C7R:U 0 1 C8R:U 0 2 C9R:A 0 3 C22R:G 0 [Edges] 0 {C7R:U -> C8R:U: adjacent_5p } 0 1 {C8R:U -> C7R:U: adjacent_3p } 0 2 {C7R:U -> C22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {C22R:G -> C7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {C8R:U -> C9R:A: adjacent_5p } 0 5 {C9R:A -> C8R:U: adjacent_3p } 0 6 {C9R:A -> C22R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {C22R:G -> C9R:A: pairing antiparallel trans XI Ss/Hh } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . MOLECULE: [GraphModel] [Vertices] 0 B4R:U 0 1 B5R:A 0 2 B6R:A 0 3 A6R:A 0 [Edges] 0 {A6R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 1 {B4R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 2 {A6R:A -> B6R:A: pairing antiparallel trans one_hbond 41 Ss/Hw } 0 3 {B6R:A -> A6R:A: pairing antiparallel trans one_hbond 41 Hw/Ss } 0 4 {B4R:U -> B5R:A: adjacent_5p } 0 5 {B5R:A -> B4R:U: adjacent_3p } 0 6 {B5R:A -> B6R:A: adjacent_5p } 0 7 {B6R:A -> B5R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . MOLECULE: [GraphModel] [Vertices] 0 B59R:A 0 1 B60R:U 0 2 B61R:U 0 3 B23R:A 0 [Edges] 0 {B23R:A -> B59R:A: pairing antiparallel trans V Hh/Ww } 0 1 {B59R:A -> B23R:A: pairing antiparallel trans V Ww/Hh } 0 2 {B23R:A -> B61R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {B61R:U -> B23R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {B59R:A -> B60R:U: adjacent_5p upward } 0 5 {B60R:U -> B59R:A: adjacent_3p downward } 0 6 {B60R:U -> B61R:U: adjacent_5p } 0 7 {B61R:U -> B60R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . [GraphModel] [Vertices] 0 E59R:A 0 1 E60R:U 0 2 E61R:U 0 3 E23R:A 0 [Edges] 0 {E23R:A -> E59R:A: pairing antiparallel trans V Hh/Ww } 0 1 {E59R:A -> E23R:A: pairing antiparallel trans V Ww/Hh } 0 2 {E23R:A -> E61R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {E61R:U -> E23R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {E59R:A -> E60R:U: adjacent_5p upward } 0 5 {E60R:U -> E59R:A: adjacent_3p downward } 0 6 {E60R:U -> E61R:U: adjacent_5p } 0 7 {E61R:U -> E60R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . MOLECULE: [GraphModel] [Vertices] 0 A26R:G 0 1 A27R:G 0 2 A28R:A 0 3 A13R:G 0 [Edges] 0 {A13R:G -> A26R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 1 {A26R:G -> A13R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 2 {A13R:G -> A28R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A28R:A -> A13R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A26R:G -> A27R:G: adjacent_5p } 0 5 {A27R:G -> A26R:G: adjacent_3p } 0 6 {A27R:G -> A28R:A: adjacent_5p } 0 7 {A28R:A -> A27R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . MOLECULE: [GraphModel] [Vertices] 0 B21R:G 0 1 B22R:A 0 2 B23R:G 0 3 B44R:A 0 [Edges] 0 {B21R:G -> B22R:A: adjacent_5p } 0 1 {B22R:A -> B21R:G: adjacent_3p } 0 2 {B21R:G -> B44R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {B44R:A -> B21R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {B22R:A -> B23R:G: adjacent_5p } 0 5 {B23R:G -> B22R:A: adjacent_3p } 0 6 {B22R:A -> B44R:A: outward } 0 7 {B44R:A -> B22R:A: outward } 0 8 {B23R:G -> B44R:A: pairing parallel trans one_hbond 57 Sw/Ss } 0 9 {B44R:A -> B23R:G: pairing parallel trans one_hbond 57 Ss/Sw } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 6 2 . 5 . 8 3 3 7 9 . MOLECULE: [GraphModel] [Vertices] 0 4R:G 0 1 5R:C 0 2 6R:U 0 3 9R:C 0 [Edges] 0 {4R:G -> 5R:C: adjacent_5p upward } 0 1 {5R:C -> 4R:G: adjacent_3p downward } 0 2 {4R:G -> 6R:U: pairing antiparallel trans one_hbond Sw/Wh } 0 3 {6R:U -> 4R:G: pairing antiparallel trans one_hbond Wh/Sw } 0 4 {4R:G -> 9R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {9R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {5R:C -> 6R:U: adjacent_5p } 0 7 {6R:U -> 5R:C: adjacent_3p } 0 8 {6R:U -> 9R:C: pairing antiparallel cis one_hbond 106 Ww/Bs } 0 9 {9R:C -> 6R:U: pairing antiparallel cis one_hbond 106 Bs/Ww } 0 [Adjacency matrix] 0 1 2 3 0 . 0 2 4 1 1 . 6 . 2 3 7 . 8 3 5 . 9 . MOLECULE: [GraphModel] [Vertices] 0 B12R:A 0 1 B13R:A 0 2 B14R:A 0 3 B38R:U 0 [Edges] 0 {B12R:A -> B13R:A: adjacent_5p upward } 0 1 {B13R:A -> B12R:A: adjacent_3p downward } 0 2 {B12R:A -> B38R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B38R:U -> B12R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B13R:A -> B14R:A: adjacent_5p } 0 5 {B14R:A -> B13R:A: adjacent_3p } 0 6 {B14R:A -> B38R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 7 {B38R:U -> B14R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . MOLECULE: [GraphModel] [Vertices] 0 A136R:C 0 1 A137R:A 0 2 A138R:G 0 3 A162R:G 0 [Edges] 0 {A136R:C -> A137R:A: adjacent_5p } 0 1 {A137R:A -> A136R:C: adjacent_3p } 0 2 {A136R:C -> A162R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A162R:G -> A136R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A137R:A -> A138R:G: adjacent_5p } 0 5 {A138R:G -> A137R:A: adjacent_3p } 0 6 {A138R:G -> A162R:G: pairing antiparallel cis one_hbond Wh/Sw } 0 7 {A162R:G -> A138R:G: pairing antiparallel cis one_hbond Sw/Wh } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . MOLECULE: [GraphModel] [Vertices] 0 '0'79R:G 0 1 '0'80R:A 0 2 '0'81R:G 0 3 '0'98R:A 0 [Edges] 0 {'0'79R:G -> '0'80R:A: adjacent_5p } 0 1 {'0'80R:A -> '0'79R:G: adjacent_3p } 0 2 {'0'79R:G -> '0'98R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 3 {'0'98R:A -> '0'79R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 4 {'0'80R:A -> '0'81R:G: adjacent_5p } 0 5 {'0'81R:G -> '0'80R:A: adjacent_3p } 0 6 {'0'80R:A -> '0'98R:A: outward } 0 7 {'0'98R:A -> '0'80R:A: outward } 0 8 {'0'81R:G -> '0'98R:A: pairing parallel trans one_hbond 57 Sw/Ss } 0 9 {'0'98R:A -> '0'81R:G: pairing parallel trans one_hbond 57 Ss/Sw } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 6 2 . 5 . 8 3 3 7 9 . [GraphModel] [Vertices] 0 '0'150R:G 0 1 '0'151R:A 0 2 '0'152R:A 0 3 '0'185R:G 0 [Edges] 0 {'0'150R:G -> '0'151R:A: adjacent_5p } 0 1 {'0'151R:A -> '0'150R:G: adjacent_3p } 0 2 {'0'150R:G -> '0'185R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 3 {'0'185R:G -> '0'150R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 4 {'0'151R:A -> '0'152R:A: adjacent_5p upward } 0 5 {'0'152R:A -> '0'151R:A: adjacent_3p downward } 0 6 {'0'152R:A -> '0'185R:G: pairing antiparallel cis VIII Ww/Ww } 0 7 {'0'185R:G -> '0'152R:A: pairing antiparallel cis VIII Ww/Ww } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . [GraphModel] [Vertices] 0 '0'246R:G 0 1 '0'247R:A 0 2 '0'248R:A 0 3 '0'265R:U 0 [Edges] 0 {'0'246R:G -> '0'247R:A: adjacent_5p } 0 1 {'0'247R:A -> '0'246R:G: adjacent_3p } 0 2 {'0'246R:G -> '0'265R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 3 {'0'265R:U -> '0'246R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 4 {'0'247R:A -> '0'248R:A: adjacent_5p } 0 5 {'0'248R:A -> '0'247R:A: adjacent_3p } 0 6 {'0'247R:A -> '0'265R:U: outward } 0 7 {'0'265R:U -> '0'247R:A: outward } 0 8 {'0'248R:A -> '0'265R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {'0'265R:U -> '0'248R:A: pairing antiparallel cis XX Ww/Ww } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 6 2 . 5 . 8 3 3 7 9 . [GraphModel] [Vertices] 0 '0'938R:G 0 1 '0'939R:A 0 2 '0'940R:G 0 3 '0'1032R:A 0 [Edges] 0 {'0'938R:G -> '0'939R:A: adjacent_5p } 0 1 {'0'939R:A -> '0'938R:G: adjacent_3p } 0 2 {'0'938R:G -> '0'1032R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 3 {'0'1032R:A -> '0'938R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 4 {'0'939R:A -> '0'940R:G: adjacent_5p } 0 5 {'0'940R:G -> '0'939R:A: adjacent_3p } 0 6 {'0'939R:A -> '0'1032R:A: outward } 0 7 {'0'1032R:A -> '0'939R:A: outward } 0 8 {'0'940R:G -> '0'1032R:A: pairing parallel trans one_hbond 57 Sw/Ss } 0 9 {'0'1032R:A -> '0'940R:G: pairing parallel trans one_hbond 57 Ss/Sw } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 6 2 . 5 . 8 3 3 7 9 . [GraphModel] [Vertices] 0 '0'941R:G 0 1 '0'942R:U 0 2 '0'943R:A 0 3 '0'1025R:C 0 [Edges] 0 {'0'941R:G -> '0'942R:U: adjacent_5p upward } 0 1 {'0'942R:U -> '0'941R:G: adjacent_3p downward } 0 2 {'0'941R:G -> '0'1025R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1025R:C -> '0'941R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'942R:U -> '0'943R:A: adjacent_5p } 0 5 {'0'943R:A -> '0'942R:U: adjacent_3p } 0 6 {'0'943R:A -> '0'1025R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 7 {'0'1025R:C -> '0'943R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . [GraphModel] [Vertices] 0 '0'1214R:G 0 1 '0'1215R:A 0 2 '0'1216R:G 0 3 '0'1152R:A 0 [Edges] 0 {'0'1152R:A -> '0'1214R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 1 {'0'1214R:G -> '0'1152R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 2 {'0'1152R:A -> '0'1215R:A: outward } 0 3 {'0'1215R:A -> '0'1152R:A: outward } 0 4 {'0'1152R:A -> '0'1216R:G: pairing parallel trans 57 Ss/Ss } 0 5 {'0'1216R:G -> '0'1152R:A: pairing parallel trans 57 Ss/Ss } 0 6 {'0'1214R:G -> '0'1215R:A: adjacent_5p } 0 7 {'0'1215R:A -> '0'1214R:G: adjacent_3p } 0 8 {'0'1215R:A -> '0'1216R:G: adjacent_5p } 0 9 {'0'1216R:G -> '0'1215R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 6 . 1 1 7 . 8 3 2 . 9 . 5 3 0 2 4 . [GraphModel] [Vertices] 0 '0'1745R:G 0 1 '0'1746R:A 0 2 '0'1747R:A 0 3 '0'2034R:U 0 [Edges] 0 {'0'1745R:G -> '0'1746R:A: adjacent_5p } 0 1 {'0'1746R:A -> '0'1745R:G: adjacent_3p } 0 2 {'0'1745R:G -> '0'2034R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 3 {'0'2034R:U -> '0'1745R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 4 {'0'1746R:A -> '0'1747R:A: adjacent_5p } 0 5 {'0'1747R:A -> '0'1746R:A: adjacent_3p } 0 6 {'0'1746R:A -> '0'2034R:U: outward } 0 7 {'0'2034R:U -> '0'1746R:A: outward } 0 8 {'0'1747R:A -> '0'2034R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {'0'2034R:U -> '0'1747R:A: pairing antiparallel cis XX Ww/Ww } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 6 2 . 5 . 8 3 3 7 9 . [GraphModel] [Vertices] 0 '0'1873R:G 0 1 '0'1874R:U 0 2 '0'1875R:A 0 3 '0'1856R:C 0 [Edges] 0 {'0'1856R:C -> '0'1873R:G: pairing parallel trans XXII Ww/Ww } 0 1 {'0'1873R:G -> '0'1856R:C: pairing parallel trans XXII Ww/Ww } 0 2 {'0'1856R:C -> '0'1875R:A: pairing parallel trans one_hbond Hw/Hh } 0 3 {'0'1875R:A -> '0'1856R:C: pairing parallel trans one_hbond Hh/Hw } 0 4 {'0'1873R:G -> '0'1874R:U: adjacent_5p upward } 0 5 {'0'1874R:U -> '0'1873R:G: adjacent_3p downward } 0 6 {'0'1874R:U -> '0'1875R:A: adjacent_5p } 0 7 {'0'1875R:A -> '0'1874R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . [GraphModel] [Vertices] 0 '0'1903R:U 0 1 '0'1904R:A 0 2 '0'1905R:U 0 3 '0'1934R:A 0 [Edges] 0 {'0'1903R:U -> '0'1904R:A: adjacent_5p } 0 1 {'0'1904R:A -> '0'1903R:U: adjacent_3p } 0 2 {'0'1903R:U -> '0'1934R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 3 {'0'1934R:A -> '0'1903R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 4 {'0'1904R:A -> '0'1905R:U: adjacent_5p upward } 0 5 {'0'1905R:U -> '0'1904R:A: adjacent_3p downward } 0 6 {'0'1905R:U -> '0'1934R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'1934R:A -> '0'1905R:U: pairing antiparallel cis XX Ww/Ww } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . [GraphModel] [Vertices] 0 '0'2257R:G 0 1 '0'2258R:A 0 2 '0'2259R:C 0 3 '0'2244R:A 0 [Edges] 0 {'0'2244R:A -> '0'2257R:G: pairing antiparallel trans XI Hh/Ss } 0 1 {'0'2257R:G -> '0'2244R:A: pairing antiparallel trans XI Ss/Hh } 0 2 {'0'2244R:A -> '0'2258R:A: outward } 0 3 {'0'2258R:A -> '0'2244R:A: outward } 0 4 {'0'2244R:A -> '0'2259R:C: pairing parallel trans one_hbond 70 Ww/Hw } 0 5 {'0'2259R:C -> '0'2244R:A: pairing parallel trans one_hbond 70 Hw/Ww } 0 6 {'0'2257R:G -> '0'2258R:A: adjacent_5p } 0 7 {'0'2258R:A -> '0'2257R:G: adjacent_3p } 0 8 {'0'2258R:A -> '0'2259R:C: adjacent_5p } 0 9 {'0'2259R:C -> '0'2258R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 6 . 1 1 7 . 8 3 2 . 9 . 5 3 0 2 4 . [GraphModel] [Vertices] 0 '0'2378R:U 0 1 '0'2379R:G 0 2 '0'2380R:A 0 3 '0'2321R:A 0 [Edges] 0 {'0'2321R:A -> '0'2378R:U: pairing parallel trans XXI Ww/Ww } 0 1 {'0'2378R:U -> '0'2321R:A: pairing parallel trans XXI Ww/Ww } 0 2 {'0'2321R:A -> '0'2380R:A: pairing parallel trans one_hbond Hh/Hh } 0 3 {'0'2380R:A -> '0'2321R:A: pairing parallel trans one_hbond Hh/Hh } 0 4 {'0'2378R:U -> '0'2379R:G: adjacent_5p } 0 5 {'0'2379R:G -> '0'2378R:U: adjacent_3p } 0 6 {'0'2379R:G -> '0'2380R:A: adjacent_5p } 0 7 {'0'2380R:A -> '0'2379R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . [GraphModel] [Vertices] 0 '0'2525R:G 0 1 '0'2526R:C 0 2 '0'2527R:U 0 3 '0'2495R:U 0 [Edges] 0 {'0'2495R:U -> '0'2525R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 1 {'0'2525R:G -> '0'2495R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 2 {'0'2495R:U -> '0'2527R:U: pairing antiparallel cis XVI Ws/Ww } 0 3 {'0'2527R:U -> '0'2495R:U: pairing antiparallel cis XVI Ww/Ws } 0 4 {'0'2525R:G -> '0'2526R:C: adjacent_5p } 0 5 {'0'2526R:C -> '0'2525R:G: adjacent_3p } 0 6 {'0'2525R:G -> '0'2527R:U: pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {'0'2527R:U -> '0'2525R:G: pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {'0'2526R:C -> '0'2527R:U: adjacent_5p } 0 9 {'0'2527R:U -> '0'2526R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 4 6 1 1 5 . 8 . 2 7 9 . 3 3 0 . 2 . [GraphModel] [Vertices] 0 '0'2680R:A 0 1 '0'2681R:A 0 2 '0'2682R:C 0 3 '0'2712R:G 0 [Edges] 0 {'0'2680R:A -> '0'2681R:A: adjacent_5p upward } 0 1 {'0'2681R:A -> '0'2680R:A: adjacent_3p downward } 0 2 {'0'2680R:A -> '0'2712R:G: pairing parallel trans one_hbond Ww/Sw } 0 3 {'0'2712R:G -> '0'2680R:A: pairing parallel trans one_hbond Sw/Ww } 0 4 {'0'2681R:A -> '0'2682R:C: adjacent_5p } 0 5 {'0'2682R:C -> '0'2681R:A: adjacent_3p } 0 6 {'0'2682R:C -> '0'2712R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2712R:G -> '0'2682R:C: pairing antiparallel cis XIX Ww/Ww } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . [GraphModel] [Vertices] 0 '0'2791R:U 0 1 '0'2792R:A 0 2 '0'2793R:A 0 3 '0'2781R:U 0 [Edges] 0 {'0'2781R:U -> '0'2791R:U: pairing antiparallel trans 81 Ww/Hh } 0 1 {'0'2791R:U -> '0'2781R:U: pairing antiparallel trans 81 Hh/Ww } 0 2 {'0'2781R:U -> '0'2793R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 3 {'0'2793R:A -> '0'2781R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 4 {'0'2791R:U -> '0'2792R:A: adjacent_5p } 0 5 {'0'2792R:A -> '0'2791R:U: adjacent_3p } 0 6 {'0'2791R:U -> '0'2793R:A: pairing parallel cis XXIII Ww/Hh } 0 7 {'0'2793R:A -> '0'2791R:U: pairing parallel cis XXIII Hh/Ww } 0 8 {'0'2792R:A -> '0'2793R:A: adjacent_5p upward } 0 9 {'0'2793R:A -> '0'2792R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 0 . 4 6 1 1 5 . 8 . 2 7 9 . 3 3 0 . 2 . [GraphModel] [Vertices] 0 '9'3050R:G 0 1 '9'3051R:A 0 2 '9'3052R:A 0 3 '9'3030R:C 0 [Edges] 0 {'9'3030R:C -> '9'3050R:G: pairing antiparallel cis XIX Ww/Ww } 0 1 {'9'3050R:G -> '9'3030R:C: pairing antiparallel cis XIX Ww/Ww } 0 2 {'9'3030R:C -> '9'3052R:A: pairing antiparallel cis one_hbond Bs/Wh } 0 3 {'9'3052R:A -> '9'3030R:C: pairing antiparallel cis one_hbond Wh/Bs } 0 4 {'9'3050R:G -> '9'3051R:A: adjacent_5p upward } 0 5 {'9'3051R:A -> '9'3050R:G: adjacent_3p downward } 0 6 {'9'3051R:A -> '9'3052R:A: adjacent_5p } 0 7 {'9'3052R:A -> '9'3051R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . MOLECULE: [GraphModel] [Vertices] 0 A114R:U 0 1 A115R:G 0 2 A116R:A 0 3 A313R:A 0 [Edges] 0 {A114R:U -> A115R:G: adjacent_5p upward } 0 1 {A115R:G -> A114R:U: adjacent_3p downward } 0 2 {A114R:U -> A313R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A313R:A -> A114R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A115R:G -> A116R:A: adjacent_5p } 0 5 {A116R:A -> A115R:G: adjacent_3p } 0 6 {A115R:G -> A313R:A: outward } 0 7 {A313R:A -> A115R:G: outward } 0 8 {A116R:A -> A313R:A: pairing antiparallel trans one_hbond 40 Wh/Ss } 0 9 {A313R:A -> A116R:A: pairing antiparallel trans one_hbond 40 Ss/Wh } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 6 2 . 5 . 8 3 3 7 9 . [GraphModel] [Vertices] 0 A686R:U 0 1 A687R:A 0 2 A688R:G 0 3 A704R:A 0 [Edges] 0 {A686R:U -> A687R:A: adjacent_5p } 0 1 {A687R:A -> A686R:U: adjacent_3p } 0 2 {A686R:U -> A704R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {A704R:A -> A686R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {A687R:A -> A688R:G: adjacent_5p } 0 5 {A688R:G -> A687R:A: adjacent_3p } 0 6 {A687R:A -> A704R:A: outward } 0 7 {A704R:A -> A687R:A: outward } 0 8 {A688R:G -> A704R:A: pairing parallel trans one_hbond Ss/Ss } 0 9 {A704R:A -> A688R:G: pairing parallel trans one_hbond Ss/Ss } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 6 2 . 5 . 8 3 3 7 9 . [GraphModel] [Vertices] 0 A752R:G 0 1 A753R:A 0 2 A754R:C 0 3 A654R:G 0 [Edges] 0 {A654R:G -> A752R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 1 {A752R:G -> A654R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 2 {A654R:G -> A753R:A: outward } 0 3 {A753R:A -> A654R:G: outward } 0 4 {A654R:G -> A754R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A754R:C -> A654R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A752R:G -> A753R:A: adjacent_5p } 0 7 {A753R:A -> A752R:G: adjacent_3p } 0 8 {A753R:A -> A754R:C: adjacent_5p } 0 9 {A754R:C -> A753R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 6 . 1 1 7 . 8 3 2 . 9 . 5 3 0 2 4 . [GraphModel] [Vertices] 0 A1005R:A 0 1 A1006R:C 0 2 A1007R:C 0 3 A1024R:G 0 [Edges] 0 {A1005R:A -> A1006R:C: adjacent_5p upward } 0 1 {A1006R:C -> A1005R:A: adjacent_3p downward } 0 2 {A1005R:A -> A1024R:G: pairing antiparallel cis one_hbond 64 Wh/Hh } 0 3 {A1024R:G -> A1005R:A: pairing antiparallel cis one_hbond 64 Hh/Wh } 0 4 {A1006R:C -> A1007R:C: adjacent_5p } 0 5 {A1007R:C -> A1006R:C: adjacent_3p } 0 6 {A1007R:C -> A1024R:G: pairing parallel cis one_hbond Ww/Sw } 0 7 {A1024R:G -> A1007R:C: pairing parallel cis one_hbond Sw/Ww } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 . [GraphModel] [Vertices] 0 A1022R:G 0 1 A1023R:G 0 2 A1024R:G 0 3 A1007R:C 0 [Edges] 0 {A1007R:C -> A1022R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 1 {A1022R:G -> A1007R:C: pairing antiparallel cis one_hbond Ws/Ww } 0 2 {A1007R:C -> A1024R:G: pairing parallel cis one_hbond Ww/Sw } 0 3 {A1024R:G -> A1007R:C: pairing parallel cis one_hbond Sw/Ww } 0 4 {A1022R:G -> A1023R:G: adjacent_5p } 0 5 {A1023R:G -> A1022R:G: adjacent_3p } 0 6 {A1023R:G -> A1024R:G: adjacent_5p upward } 0 7 {A1024R:G -> A1023R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . [GraphModel] [Vertices] 0 A1032R:G 0 1 A1033R:G 0 2 A1034R:G 0 3 A1028R:C 0 [Edges] 0 {A1028R:C -> A1032R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 1 {A1032R:G -> A1028R:C: pairing antiparallel cis one_hbond Ws/Ww } 0 2 {A1028R:C -> A1033R:G: pairing antiparallel trans one_hbond 122 Wh/Hw } 0 3 {A1033R:G -> A1028R:C: pairing antiparallel trans one_hbond 122 Hw/Wh } 0 4 {A1028R:C -> A1034R:G: pairing antiparallel cis one_hbond Hw/Hw } 0 5 {A1034R:G -> A1028R:C: pairing antiparallel cis one_hbond Hw/Hw } 0 6 {A1032R:G -> A1033R:G: adjacent_5p } 0 7 {A1033R:G -> A1032R:G: adjacent_3p } 0 8 {A1033R:G -> A1034R:G: adjacent_5p upward } 0 9 {A1034R:G -> A1033R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 0 . 6 . 1 1 7 . 8 3 2 . 9 . 5 3 0 2 4 . [GraphModel] [Vertices] 0 A1145R:C 0 1 A1146R:A 0 2 A1147R:C 0 3 A1127R:G 0 [Edges] 0 {A1127R:G -> A1145R:C: pairing antiparallel cis one_hbond Ww/Ss } 0 1 {A1145R:C -> A1127R:G: pairing antiparallel cis one_hbond Ss/Ww } 0 2 {A1127R:G -> A1147R:C: pairing antiparallel cis one_hbond 120 Ss/Wh } 0 3 {A1147R:C -> A1127R:G: pairing antiparallel cis one_hbond 120 Wh/Ss } 0 4 {A1145R:C -> A1146R:A: adjacent_5p } 0 5 {A1146R:A -> A1145R:C: adjacent_3p } 0 6 {A1146R:A -> A1147R:C: adjacent_5p upward } 0 7 {A1147R:C -> A1146R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . [GraphModel] [Vertices] 0 A1211R:U 0 1 A1212R:U 0 2 A1213R:A 0 3 A1046R:A 0 [Edges] 0 {A1046R:A -> A1211R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 1 {A1211R:U -> A1046R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 2 {A1046R:A -> A1213R:A: pairing parallel trans one_hbond Ww/Ww } 0 3 {A1213R:A -> A1046R:A: pairing parallel trans one_hbond Ww/Ww } 0 4 {A1211R:U -> A1212R:U: adjacent_5p } 0 5 {A1212R:U -> A1211R:U: adjacent_3p } 0 6 {A1212R:U -> A1213R:A: adjacent_5p } 0 7 {A1213R:A -> A1212R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . MOLECULE: [GraphModel] [Vertices] 0 D40R:A 0 1 D41R:U 0 2 D42R:U 0 3 C23R:A 0 [Edges] 0 {C23R:A -> D40R:A: pairing antiparallel trans one_hbond Hh/Ww } 0 1 {D40R:A -> C23R:A: pairing antiparallel trans one_hbond Ww/Hh } 0 2 {C23R:A -> D42R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {D42R:U -> C23R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {D40R:A -> D41R:U: adjacent_5p upward } 0 5 {D41R:U -> D40R:A: adjacent_3p downward } 0 6 {D41R:U -> D42R:U: adjacent_5p } 0 7 {D42R:U -> D41R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 0 . 4 . 1 1 5 . 6 . 2 . 7 . 3 3 0 . 2 . MOLECULE: [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:G 0 2 A11R:C 0 3 B6R:G 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p } 0 1 {A10R:G -> A9R:G: adjacent_3p } 0 2 {A9R:G -> B6R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 3 {B6R:G -> A9R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 4 {A10R:G -> A11R:C: adjacent_5p } 0 5 {A11R:C -> A10R:G: adjacent_3p } 0 6 {A11R:C -> B6R:G: pairing antiparallel cis Ww/Ww } 0 7 {B6R:G -> A11R:C: pairing antiparallel cis Ww/Ww } 0 [Adjacency matrix] 0 1 2 3 0 . 0 . 2 1 1 . 4 . 2 . 5 . 6 3 3 . 7 .