MOLECULE: [GraphModel] [Vertices] 0 19R:G 0 1 20R:U 0 2 4R:A 0 3 5R:U 0 4 6R:A 0 5 7R:C 0 [Edges] 0 {4R:A -> 5R:U: adjacent_5p upward } 0 1 {5R:U -> 4R:A: adjacent_3p downward } 0 2 {4R:A -> 20R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {20R:U -> 4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {5R:U -> 6R:A: adjacent_5p } 0 5 {6R:A -> 5R:U: adjacent_3p } 0 6 {6R:A -> 7R:C: adjacent_5p upward } 0 7 {7R:C -> 6R:A: adjacent_3p downward } 0 8 {7R:C -> 19R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {19R:G -> 7R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {19R:G -> 20R:U: adjacent_5p } 0 11 {20R:U -> 19R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 A59R:A 0 1 A60R:U 0 2 A10R:G 0 3 A11R:G 0 4 A12R:A 0 5 A13R:G 0 [Edges] 0 {A10R:G -> A11R:G: adjacent_5p } 0 1 {A11R:G -> A10R:G: adjacent_3p } 0 2 {A10R:G -> A60R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A60R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A11R:G -> A12R:A: adjacent_5p downward } 0 5 {A12R:A -> A11R:G: adjacent_3p upward } 0 6 {A12R:A -> A13R:G: adjacent_5p } 0 7 {A13R:G -> A12R:A: adjacent_3p } 0 8 {A12R:A -> A59R:A: outward } 0 9 {A59R:A -> A12R:A: outward } 0 10 {A13R:G -> A59R:A: pairing parallel trans one_hbond 57 Sw/Ss } 0 11 {A59R:A -> A13R:G: pairing parallel trans one_hbond 57 Ss/Sw } 0 12 {A59R:A -> A60R:U: adjacent_5p } 0 13 {A60R:U -> A59R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . 9 11 1 13 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 8 . . 5 . 6 5 10 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 A28R:G 0 1 A29R:C 0 2 A15R:U 0 3 A16R:A 0 4 A17R:A 0 5 A18R:C 0 [Edges] 0 {A15R:U -> A16R:A: adjacent_5p } 0 1 {A16R:A -> A15R:U: adjacent_3p } 0 2 {A15R:U -> A29R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {A29R:C -> A15R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A16R:A -> A17R:A: adjacent_5p upward } 0 5 {A17R:A -> A16R:A: adjacent_3p downward } 0 6 {A17R:A -> A18R:C: adjacent_5p upward } 0 7 {A18R:C -> A17R:A: adjacent_3p downward } 0 8 {A17R:A -> A29R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 9 {A29R:C -> A17R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 10 {A18R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A28R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A28R:G -> A29R:C: adjacent_5p upward } 0 13 {A29R:C -> A28R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 3 . 9 . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . 8 . 5 . 6 5 10 . . . 7 . [GraphModel] [Vertices] 0 C228R:G 0 1 C229R:C 0 2 C215R:U 0 3 C216R:A 0 4 C217R:A 0 5 C218R:C 0 [Edges] 0 {C215R:U -> C216R:A: adjacent_5p } 0 1 {C216R:A -> C215R:U: adjacent_3p } 0 2 {C215R:U -> C229R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {C229R:C -> C215R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {C216R:A -> C217R:A: adjacent_5p upward } 0 5 {C217R:A -> C216R:A: adjacent_3p downward } 0 6 {C217R:A -> C218R:C: adjacent_5p upward } 0 7 {C218R:C -> C217R:A: adjacent_3p downward } 0 8 {C217R:A -> C229R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 9 {C229R:C -> C217R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 10 {C218R:C -> C228R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C228R:G -> C218R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C228R:G -> C229R:C: adjacent_5p upward } 0 13 {C229R:C -> C228R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 3 . 9 . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . 8 . 5 . 6 5 10 . . . 7 . [GraphModel] [Vertices] 0 E428R:G 0 1 E429R:C 0 2 E415R:U 0 3 E416R:A 0 4 E417R:A 0 5 E418R:C 0 [Edges] 0 {E415R:U -> E416R:A: adjacent_5p } 0 1 {E416R:A -> E415R:U: adjacent_3p } 0 2 {E415R:U -> E429R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {E429R:C -> E415R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {E416R:A -> E417R:A: adjacent_5p upward } 0 5 {E417R:A -> E416R:A: adjacent_3p downward } 0 6 {E417R:A -> E418R:C: adjacent_5p upward } 0 7 {E418R:C -> E417R:A: adjacent_3p downward } 0 8 {E417R:A -> E429R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 9 {E429R:C -> E417R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 10 {E418R:C -> E428R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {E428R:G -> E418R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {E428R:G -> E429R:C: adjacent_5p upward } 0 13 {E429R:C -> E428R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 3 . 9 . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . 8 . 5 . 6 5 10 . . . 7 . [GraphModel] [Vertices] 0 G628R:G 0 1 G629R:C 0 2 G615R:U 0 3 G616R:A 0 4 G617R:A 0 5 G618R:C 0 [Edges] 0 {G615R:U -> G616R:A: adjacent_5p } 0 1 {G616R:A -> G615R:U: adjacent_3p } 0 2 {G615R:U -> G629R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {G629R:C -> G615R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {G616R:A -> G617R:A: adjacent_5p upward } 0 5 {G617R:A -> G616R:A: adjacent_3p downward } 0 6 {G617R:A -> G618R:C: adjacent_5p upward } 0 7 {G618R:C -> G617R:A: adjacent_3p downward } 0 8 {G617R:A -> G629R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 9 {G629R:C -> G617R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 10 {G618R:C -> G628R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {G628R:G -> G618R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {G628R:G -> G629R:C: adjacent_5p upward } 0 13 {G629R:C -> G628R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 3 . 9 . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . 8 . 5 . 6 5 10 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 A228R:G 0 1 A229R:C 0 2 A215R:U 0 3 A216R:A 0 4 A217R:A 0 5 A218R:C 0 [Edges] 0 {A215R:U -> A216R:A: adjacent_5p } 0 1 {A216R:A -> A215R:U: adjacent_3p } 0 2 {A215R:U -> A229R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {A229R:C -> A215R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A216R:A -> A217R:A: adjacent_5p upward } 0 5 {A217R:A -> A216R:A: adjacent_3p downward } 0 6 {A217R:A -> A218R:C: adjacent_5p upward } 0 7 {A218R:C -> A217R:A: adjacent_3p downward } 0 8 {A217R:A -> A229R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 9 {A229R:C -> A217R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 10 {A218R:C -> A228R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A228R:G -> A218R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A228R:G -> A229R:C: adjacent_5p upward } 0 13 {A229R:C -> A228R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 3 . 9 . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . 8 . 5 . 6 5 10 . . . 7 . [GraphModel] [Vertices] 0 B328R:G 0 1 B329R:C 0 2 B315R:U 0 3 B316R:A 0 4 B317R:A 0 5 B318R:C 0 [Edges] 0 {B315R:U -> B316R:A: adjacent_5p } 0 1 {B316R:A -> B315R:U: adjacent_3p } 0 2 {B315R:U -> B329R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B329R:C -> B315R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {B316R:A -> B317R:A: adjacent_5p upward } 0 5 {B317R:A -> B316R:A: adjacent_3p downward } 0 6 {B317R:A -> B318R:C: adjacent_5p upward } 0 7 {B318R:C -> B317R:A: adjacent_3p downward } 0 8 {B317R:A -> B329R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 9 {B329R:C -> B317R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 10 {B318R:C -> B328R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B328R:G -> B318R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B328R:G -> B329R:C: adjacent_5p upward } 0 13 {B329R:C -> B328R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 3 . 9 . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . 8 . 5 . 6 5 10 . . . 7 . [GraphModel] [Vertices] 0 C428R:G 0 1 C429R:C 0 2 C415R:U 0 3 C416R:A 0 4 C417R:A 0 5 C418R:C 0 [Edges] 0 {C415R:U -> C416R:A: adjacent_5p } 0 1 {C416R:A -> C415R:U: adjacent_3p } 0 2 {C415R:U -> C429R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {C429R:C -> C415R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {C416R:A -> C417R:A: adjacent_5p upward } 0 5 {C417R:A -> C416R:A: adjacent_3p downward } 0 6 {C417R:A -> C418R:C: adjacent_5p upward } 0 7 {C418R:C -> C417R:A: adjacent_3p downward } 0 8 {C417R:A -> C429R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 9 {C429R:C -> C417R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 10 {C418R:C -> C428R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C428R:G -> C418R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C428R:G -> C429R:C: adjacent_5p upward } 0 13 {C429R:C -> C428R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 3 . 9 . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . 8 . 5 . 6 5 10 . . . 7 . [GraphModel] [Vertices] 0 D528R:G 0 1 D529R:C 0 2 D515R:U 0 3 D516R:A 0 4 D517R:A 0 5 D518R:C 0 [Edges] 0 {D515R:U -> D516R:A: adjacent_5p } 0 1 {D516R:A -> D515R:U: adjacent_3p } 0 2 {D515R:U -> D529R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {D529R:C -> D515R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {D516R:A -> D517R:A: adjacent_5p upward } 0 5 {D517R:A -> D516R:A: adjacent_3p downward } 0 6 {D517R:A -> D518R:C: adjacent_5p upward } 0 7 {D518R:C -> D517R:A: adjacent_3p downward } 0 8 {D517R:A -> D529R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 9 {D529R:C -> D517R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 10 {D518R:C -> D528R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {D528R:G -> D518R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {D528R:G -> D529R:C: adjacent_5p upward } 0 13 {D529R:C -> D528R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 3 . 9 . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . 8 . 5 . 6 5 10 . . . 7 . [GraphModel] [Vertices] 0 E128R:G 0 1 E129R:C 0 2 E115R:U 0 3 E116R:A 0 4 E117R:A 0 5 E118R:C 0 [Edges] 0 {E115R:U -> E116R:A: adjacent_5p } 0 1 {E116R:A -> E115R:U: adjacent_3p } 0 2 {E115R:U -> E129R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {E129R:C -> E115R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {E116R:A -> E117R:A: adjacent_5p upward } 0 5 {E117R:A -> E116R:A: adjacent_3p downward } 0 6 {E117R:A -> E118R:C: adjacent_5p upward } 0 7 {E118R:C -> E117R:A: adjacent_3p downward } 0 8 {E117R:A -> E129R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 9 {E129R:C -> E117R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 10 {E118R:C -> E128R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {E128R:G -> E118R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {E128R:G -> E129R:C: adjacent_5p upward } 0 13 {E129R:C -> E128R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 3 . 9 . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . 8 . 5 . 6 5 10 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 B953R:G 0 1 B954R:U 0 2 B958R:A 0 3 B959R:A 0 4 B960R:U 0 5 B961R:C 0 [Edges] 0 {B953R:G -> B954R:U: adjacent_5p upward } 0 1 {B954R:U -> B953R:G: adjacent_3p downward } 0 2 {B953R:G -> B961R:C: pairing antiparallel cis Ww/Ww } 0 3 {B961R:C -> B953R:G: pairing antiparallel cis Ww/Ww } 0 4 {B954R:U -> B958R:A: pairing antiparallel trans one_hbond Ww/Hh } 0 5 {B958R:A -> B954R:U: pairing antiparallel trans one_hbond Hh/Ww } 0 6 {B958R:A -> B959R:A: adjacent_5p } 0 7 {B959R:A -> B958R:A: adjacent_3p } 0 8 {B958R:A -> B961R:C: upward } 0 9 {B961R:C -> B958R:A: downward } 0 10 {B959R:A -> B960R:U: adjacent_5p upward } 0 11 {B960R:U -> B959R:A: adjacent_3p downward } 0 12 {B960R:U -> B961R:C: adjacent_5p } 0 13 {B961R:C -> B960R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . MOLECULE: [GraphModel] [Vertices] 0 B953R:G 0 1 B954R:U 0 2 B958R:A 0 3 B959R:A 0 4 B960R:U 0 5 B961R:C 0 [Edges] 0 {B953R:G -> B954R:U: adjacent_5p upward } 0 1 {B954R:U -> B953R:G: adjacent_3p downward } 0 2 {B953R:G -> B961R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B961R:C -> B953R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B954R:U -> B958R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {B958R:A -> B954R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {B958R:A -> B959R:A: adjacent_5p } 0 7 {B959R:A -> B958R:A: adjacent_3p } 0 8 {B958R:A -> B961R:C: upward } 0 9 {B961R:C -> B958R:A: downward } 0 10 {B959R:A -> B960R:U: adjacent_5p upward } 0 11 {B960R:U -> B959R:A: adjacent_3p downward } 0 12 {B960R:U -> B961R:C: adjacent_5p } 0 13 {B961R:C -> B960R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . MOLECULE: [GraphModel] [Vertices] 0 A5R:G 0 1 A6R:C 0 2 A25R:G 0 3 A26R:U 0 4 A27R:A 0 5 A28R:C 0 [Edges] 0 {A5R:G -> A6R:C: adjacent_5p } 0 1 {A6R:C -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A28R:C: pairing antiparallel cis Ww/Ww } 0 3 {A28R:C -> A5R:G: pairing antiparallel cis Ww/Ww } 0 4 {A6R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A25R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A25R:G -> A26R:U: adjacent_5p upward } 0 7 {A26R:U -> A25R:G: adjacent_3p downward } 0 8 {A25R:G -> A27R:A: pairing parallel cis one_hbond 53 Bs/Hh } 0 9 {A27R:A -> A25R:G: pairing parallel cis one_hbond 53 Hh/Bs } 0 10 {A26R:U -> A27R:A: adjacent_5p } 0 11 {A27R:A -> A26R:U: adjacent_3p } 0 12 {A27R:A -> A28R:C: adjacent_5p upward } 0 13 {A28R:C -> A27R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 8 . 3 . . 7 . 10 . 4 . . 9 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A8R:G 0 1 A9R:G 0 2 A20R:C 0 3 A21R:G 0 4 A22R:A 0 5 A23R:C 0 [Edges] 0 {A8R:G -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:G: adjacent_3p downward } 0 2 {A8R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A9R:G -> A22R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {A22R:A -> A9R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {A20R:C -> A21R:G: adjacent_5p } 0 9 {A21R:G -> A20R:C: adjacent_3p } 0 10 {A21R:G -> A22R:A: adjacent_5p } 0 11 {A22R:A -> A21R:G: adjacent_3p } 0 12 {A22R:A -> A23R:C: adjacent_5p upward } 0 13 {A23R:C -> A22R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:U 0 2 A19R:A 0 3 A20R:C 0 4 A21R:G 0 5 A22R:A 0 [Edges] 0 {A9R:G -> A10R:U: adjacent_5p upward } 0 1 {A10R:U -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A9R:G -> A22R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {A22R:A -> A9R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {A10R:U -> A19R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A19R:A -> A10R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A19R:A -> A20R:C: adjacent_5p upward } 0 9 {A20R:C -> A19R:A: adjacent_3p downward } 0 10 {A20R:C -> A21R:G: adjacent_5p } 0 11 {A21R:G -> A20R:C: adjacent_3p } 0 12 {A21R:G -> A22R:A: adjacent_5p } 0 13 {A22R:A -> A21R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 . 4 1 1 . 6 . . . 2 . 7 . 8 . . 3 3 . 9 . 10 . 4 . . . 11 . 12 5 5 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A17R:G 0 1 A18R:A 0 2 A11R:U 0 3 A12R:C 0 4 A13R:U 0 5 A14R:U 0 [Edges] 0 {A11R:U -> A12R:C: adjacent_5p } 0 1 {A12R:C -> A11R:U: adjacent_3p } 0 2 {A11R:U -> A18R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 3 {A18R:A -> A11R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 4 {A12R:C -> A13R:U: adjacent_5p upward } 0 5 {A13R:U -> A12R:C: adjacent_3p downward } 0 6 {A12R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A13R:U -> A14R:U: adjacent_5p } 0 9 {A14R:U -> A13R:U: adjacent_3p } 0 10 {A14R:U -> A17R:G: pairing parallel trans one_hbond 89 Hw/Sw } 0 11 {A17R:G -> A14R:U: pairing parallel trans one_hbond 89 Sw/Hw } 0 12 {A17R:G -> A18R:A: adjacent_5p upward } 0 13 {A18R:A -> A17R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . 7 . 11 1 13 . 3 . . . 2 . 2 . 0 . . 3 6 . 1 . 4 . 4 . . . 5 . 8 5 10 . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A2068R:G 0 1 A2069R:U 0 2 A2074R:A 0 3 A2075R:G 0 4 A2076R:U 0 5 A2077R:C 0 [Edges] 0 {A2068R:G -> A2069R:U: adjacent_5p upward } 0 1 {A2069R:U -> A2068R:G: adjacent_3p downward } 0 2 {A2068R:G -> A2077R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2077R:C -> A2068R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2069R:U -> A2074R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {A2074R:A -> A2069R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {A2074R:A -> A2075R:G: adjacent_5p } 0 7 {A2075R:G -> A2074R:A: adjacent_3p } 0 8 {A2074R:A -> A2077R:C: upward } 0 9 {A2077R:C -> A2074R:A: downward } 0 10 {A2075R:G -> A2076R:U: adjacent_5p upward } 0 11 {A2076R:U -> A2075R:G: adjacent_3p downward } 0 12 {A2076R:U -> A2077R:C: adjacent_5p } 0 13 {A2077R:C -> A2076R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . [GraphModel] [Vertices] 0 A2244R:A 0 1 A2245R:C 0 2 A2256R:G 0 3 A2257R:G 0 4 A2258R:A 0 5 A2259R:C 0 [Edges] 0 {A2244R:A -> A2245R:C: adjacent_5p upward } 0 1 {A2245R:C -> A2244R:A: adjacent_3p downward } 0 2 {A2244R:A -> A2257R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A2257R:G -> A2244R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A2244R:A -> A2258R:A: outward } 0 5 {A2258R:A -> A2244R:A: outward } 0 6 {A2244R:A -> A2259R:C: pairing parallel trans one_hbond 70 Ww/Hw } 0 7 {A2259R:C -> A2244R:A: pairing parallel trans one_hbond 70 Hw/Ww } 0 8 {A2245R:C -> A2256R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A2256R:G -> A2245R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A2256R:G -> A2257R:G: adjacent_5p upward } 0 11 {A2257R:G -> A2256R:G: adjacent_3p downward } 0 12 {A2257R:G -> A2258R:A: adjacent_5p } 0 13 {A2258R:A -> A2257R:G: adjacent_3p } 0 14 {A2258R:A -> A2259R:C: adjacent_5p } 0 15 {A2259R:C -> A2258R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 4 6 1 1 . 8 . . . 2 . 9 . 10 . . 3 3 . 11 . 12 . 4 5 . . 13 . 14 5 7 . . . 15 . [GraphModel] [Vertices] 0 A2331R:C 0 1 A2332R:A 0 2 A2352R:G 0 3 A2353R:A 0 4 A2354R:A 0 5 A2355R:G 0 [Edges] 0 {A2331R:C -> A2332R:A: adjacent_5p upward } 0 1 {A2332R:A -> A2331R:C: adjacent_3p downward } 0 2 {A2331R:C -> A2355R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2355R:G -> A2331R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2332R:A -> A2352R:G: pairing antiparallel trans XI Hh/Ss } 0 5 {A2352R:G -> A2332R:A: pairing antiparallel trans XI Ss/Hh } 0 6 {A2332R:A -> A2355R:G: outward } 0 7 {A2355R:G -> A2332R:A: outward } 0 8 {A2352R:G -> A2353R:A: adjacent_5p } 0 9 {A2353R:A -> A2352R:G: adjacent_3p } 0 10 {A2353R:A -> A2354R:A: adjacent_5p downward } 0 11 {A2354R:A -> A2353R:A: adjacent_3p upward } 0 12 {A2354R:A -> A2355R:G: adjacent_5p } 0 13 {A2355R:G -> A2354R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . 6 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . . . 11 . 12 5 3 7 . . 13 . [GraphModel] [Vertices] 0 A2356R:A 0 1 A2357R:G 0 2 A2366R:C 0 3 A2367R:A 0 4 A2368R:A 0 5 A2369R:A 0 [Edges] 0 {A2356R:A -> A2357R:G: adjacent_5p upward } 0 1 {A2357R:G -> A2356R:A: adjacent_3p downward } 0 2 {A2356R:A -> A2369R:A: pairing parallel trans one_hbond Wh/Ww } 0 3 {A2369R:A -> A2356R:A: pairing parallel trans one_hbond Ww/Wh } 0 4 {A2357R:G -> A2366R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A2366R:C -> A2357R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A2366R:C -> A2367R:A: adjacent_5p } 0 7 {A2367R:A -> A2366R:C: adjacent_3p } 0 8 {A2367R:A -> A2368R:A: adjacent_5p } 0 9 {A2368R:A -> A2367R:A: adjacent_3p } 0 10 {A2367R:A -> A2369R:A: outward } 0 11 {A2369R:A -> A2367R:A: outward } 0 12 {A2368R:A -> A2369R:A: adjacent_5p } 0 13 {A2369R:A -> A2368R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 10 4 . . . 9 . 12 5 3 . . 11 13 . [GraphModel] [Vertices] 0 A2494R:G 0 1 A2495R:U 0 2 A2525R:G 0 3 A2526R:C 0 4 A2527R:U 0 5 A2528R:U 0 [Edges] 0 {A2494R:G -> A2495R:U: adjacent_5p upward } 0 1 {A2495R:U -> A2494R:G: adjacent_3p downward } 0 2 {A2494R:G -> A2528R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A2528R:U -> A2494R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A2495R:U -> A2525R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 5 {A2525R:G -> A2495R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 6 {A2495R:U -> A2527R:U: pairing antiparallel cis XVI Ws/Ww } 0 7 {A2527R:U -> A2495R:U: pairing antiparallel cis XVI Ww/Ws } 0 8 {A2525R:G -> A2526R:C: adjacent_5p } 0 9 {A2526R:C -> A2525R:G: adjacent_3p } 0 10 {A2525R:G -> A2527R:U: pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {A2527R:U -> A2525R:G: pairing parallel cis one_hbond 89 Hw/Sw } 0 12 {A2526R:C -> A2527R:U: adjacent_5p } 0 13 {A2527R:U -> A2526R:C: adjacent_3p } 0 14 {A2527R:U -> A2528R:U: adjacent_5p upward } 0 15 {A2528R:U -> A2527R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 A2495R:U 0 1 A2496R:C 0 2 A2524R:G 0 3 A2525R:G 0 4 A2526R:C 0 5 A2527R:U 0 [Edges] 0 {A2495R:U -> A2496R:C: adjacent_5p upward } 0 1 {A2496R:C -> A2495R:U: adjacent_3p downward } 0 2 {A2495R:U -> A2525R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 3 {A2525R:G -> A2495R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 4 {A2495R:U -> A2527R:U: pairing antiparallel cis XVI Ws/Ww } 0 5 {A2527R:U -> A2495R:U: pairing antiparallel cis XVI Ww/Ws } 0 6 {A2496R:C -> A2524R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2524R:G -> A2496R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2524R:G -> A2525R:G: adjacent_5p upward } 0 9 {A2525R:G -> A2524R:G: adjacent_3p downward } 0 10 {A2525R:G -> A2526R:C: adjacent_5p } 0 11 {A2526R:C -> A2525R:G: adjacent_3p } 0 12 {A2525R:G -> A2527R:U: pairing parallel cis one_hbond 89 Sw/Hw } 0 13 {A2527R:U -> A2525R:G: pairing parallel cis one_hbond 89 Hw/Sw } 0 14 {A2526R:C -> A2527R:U: adjacent_5p } 0 15 {A2527R:U -> A2526R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 . 4 1 1 . 6 . . . 2 . 7 . 8 . . 3 3 . 9 . 10 12 4 . . . 11 . 14 5 5 . . 13 15 . [GraphModel] [Vertices] 0 A2545R:U 0 1 A2546R:U 0 2 A2610R:U 0 3 A2611R:G 0 4 A2612R:A 0 5 A2613R:G 0 [Edges] 0 {A2545R:U -> A2546R:U: adjacent_5p upward } 0 1 {A2546R:U -> A2545R:U: adjacent_3p downward } 0 2 {A2545R:U -> A2613R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A2613R:G -> A2545R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A2546R:U -> A2610R:U: pairing antiparallel cis XVI Ww/Ws } 0 5 {A2610R:U -> A2546R:U: pairing antiparallel cis XVI Ws/Ww } 0 6 {A2610R:U -> A2611R:G: adjacent_5p } 0 7 {A2611R:G -> A2610R:U: adjacent_3p } 0 8 {A2611R:G -> A2612R:A: adjacent_5p } 0 9 {A2612R:A -> A2611R:G: adjacent_3p } 0 10 {A2612R:A -> A2613R:G: adjacent_5p } 0 11 {A2613R:G -> A2612R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 A2547R:C 0 1 A2548R:C 0 2 A2606R:G 0 3 A2607R:U 0 4 A2608R:C 0 5 A2609R:G 0 [Edges] 0 {A2547R:C -> A2548R:C: adjacent_5p } 0 1 {A2548R:C -> A2547R:C: adjacent_3p } 0 2 {A2547R:C -> A2609R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2609R:G -> A2547R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2548R:C -> A2606R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A2606R:G -> A2548R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A2606R:G -> A2607R:U: adjacent_5p } 0 7 {A2607R:U -> A2606R:G: adjacent_3p } 0 8 {A2606R:G -> A2609R:G: upward } 0 9 {A2609R:G -> A2606R:G: downward } 0 10 {A2607R:U -> A2608R:C: adjacent_5p } 0 11 {A2608R:C -> A2607R:U: adjacent_3p } 0 12 {A2608R:C -> A2609R:G: adjacent_5p } 0 13 {A2609R:G -> A2608R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . [GraphModel] [Vertices] 0 A2557R:U 0 1 A2558R:G 0 2 A2575R:C 0 3 A2576R:A 0 4 A2577R:A 0 5 A2578R:G 0 [Edges] 0 {A2557R:U -> A2558R:G: adjacent_5p } 0 1 {A2558R:G -> A2557R:U: adjacent_3p } 0 2 {A2557R:U -> A2578R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A2578R:G -> A2557R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A2558R:G -> A2575R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A2575R:C -> A2558R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A2575R:C -> A2576R:A: adjacent_5p upward } 0 7 {A2576R:A -> A2575R:C: adjacent_3p downward } 0 8 {A2576R:A -> A2577R:A: adjacent_5p } 0 9 {A2577R:A -> A2576R:A: adjacent_3p } 0 10 {A2577R:A -> A2578R:G: adjacent_5p } 0 11 {A2578R:G -> A2577R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:G 0 2 B19R:U 0 3 B20R:U 0 4 B21R:U 0 5 B22R:C 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B22R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:G -> B19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 5 {B19R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 6 {A10R:G -> B22R:C: outward } 0 7 {B22R:C -> A10R:G: outward } 0 8 {B19R:U -> B20R:U: adjacent_5p } 0 9 {B20R:U -> B19R:U: adjacent_3p } 0 10 {B20R:U -> B21R:U: adjacent_5p } 0 11 {B21R:U -> B20R:U: adjacent_3p } 0 12 {B21R:U -> B22R:C: adjacent_5p } 0 13 {B22R:C -> B21R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . 6 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . . . 11 . 12 5 3 7 . . 13 . [GraphModel] [Vertices] 0 B23R:G 0 1 B24R:G 0 2 A5R:U 0 3 A6R:U 0 4 A7R:U 0 5 A8R:C 0 [Edges] 0 {A5R:U -> A6R:U: adjacent_5p } 0 1 {A6R:U -> A5R:U: adjacent_3p } 0 2 {A5R:U -> B24R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B24R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A6R:U -> A7R:U: adjacent_5p } 0 5 {A7R:U -> A6R:U: adjacent_3p } 0 6 {A7R:U -> A8R:C: adjacent_5p } 0 7 {A8R:C -> A7R:U: adjacent_3p } 0 8 {A8R:C -> B23R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B23R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A8R:C -> B24R:G: outward } 0 11 {B24R:G -> A8R:C: outward } 0 12 {B23R:G -> B24R:G: adjacent_5p upward } 0 13 {B24R:G -> B23R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 9 1 13 . 3 . . 11 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 10 . . 7 . MOLECULE: [GraphModel] [Vertices] 0 D654R:G 0 1 D655R:A 0 2 E751R:U 0 3 E752R:G 0 4 E753R:A 0 5 E754R:C 0 [Edges] 0 {D654R:G -> D655R:A: adjacent_5p upward } 0 1 {D655R:A -> D654R:G: adjacent_3p downward } 0 2 {D654R:G -> E752R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 3 {E752R:G -> D654R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 4 {D654R:G -> E753R:A: outward } 0 5 {E753R:A -> D654R:G: outward } 0 6 {D654R:G -> E754R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {E754R:C -> D654R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {D655R:A -> E751R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {E751R:U -> D655R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {E751R:U -> E752R:G: adjacent_5p upward } 0 11 {E752R:G -> E751R:U: adjacent_3p downward } 0 12 {E752R:G -> E753R:A: adjacent_5p } 0 13 {E753R:A -> E752R:G: adjacent_3p } 0 14 {E753R:A -> E754R:C: adjacent_5p } 0 15 {E754R:C -> E753R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 4 6 1 1 . 8 . . . 2 . 9 . 10 . . 3 3 . 11 . 12 . 4 5 . . 13 . 14 5 7 . . . 15 . [GraphModel] [Vertices] 0 E732R:C 0 1 E733R:A 0 2 E722R:A 0 3 E723R:U 0 4 E724R:G 0 5 E725R:G 0 [Edges] 0 {E722R:A -> E723R:U: adjacent_5p } 0 1 {E723R:U -> E722R:A: adjacent_3p } 0 2 {E722R:A -> E724R:G: outward } 0 3 {E724R:G -> E722R:A: outward } 0 4 {E722R:A -> E733R:A: pairing parallel trans I Ww/Ww } 0 5 {E733R:A -> E722R:A: pairing parallel trans I Ww/Ww } 0 6 {E723R:U -> E724R:G: adjacent_5p } 0 7 {E724R:G -> E723R:U: adjacent_3p } 0 8 {E724R:G -> E725R:G: adjacent_5p upward } 0 9 {E725R:G -> E724R:G: adjacent_3p downward } 0 10 {E725R:G -> E732R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {E732R:C -> E725R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {E732R:C -> E733R:A: adjacent_5p } 0 13 {E733R:A -> E732R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 5 . . . 2 . 4 . 0 2 . 3 . . 1 . 6 . 4 . . 3 7 . 8 5 10 . . . 9 . [GraphModel] [Vertices] 0 I654R:G 0 1 I655R:A 0 2 J751R:U 0 3 J752R:G 0 4 J753R:A 0 5 J754R:C 0 [Edges] 0 {I654R:G -> I655R:A: adjacent_5p upward } 0 1 {I655R:A -> I654R:G: adjacent_3p downward } 0 2 {I654R:G -> J752R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 3 {J752R:G -> I654R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 4 {I654R:G -> J753R:A: outward } 0 5 {J753R:A -> I654R:G: outward } 0 6 {I654R:G -> J754R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {J754R:C -> I654R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {I655R:A -> J751R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {J751R:U -> I655R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {J751R:U -> J752R:G: adjacent_5p upward } 0 11 {J752R:G -> J751R:U: adjacent_3p downward } 0 12 {J752R:G -> J753R:A: adjacent_5p } 0 13 {J753R:A -> J752R:G: adjacent_3p } 0 14 {J753R:A -> J754R:C: adjacent_5p } 0 15 {J754R:C -> J753R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 4 6 1 1 . 8 . . . 2 . 9 . 10 . . 3 3 . 11 . 12 . 4 5 . . 13 . 14 5 7 . . . 15 . [GraphModel] [Vertices] 0 J732R:C 0 1 J733R:A 0 2 J722R:A 0 3 J723R:U 0 4 J724R:G 0 5 J725R:G 0 [Edges] 0 {J722R:A -> J723R:U: adjacent_5p } 0 1 {J723R:U -> J722R:A: adjacent_3p } 0 2 {J722R:A -> J724R:G: outward } 0 3 {J724R:G -> J722R:A: outward } 0 4 {J722R:A -> J733R:A: pairing parallel trans I Ww/Ww } 0 5 {J733R:A -> J722R:A: pairing parallel trans I Ww/Ww } 0 6 {J723R:U -> J724R:G: adjacent_5p } 0 7 {J724R:G -> J723R:U: adjacent_3p } 0 8 {J724R:G -> J725R:G: adjacent_5p upward } 0 9 {J725R:G -> J724R:G: adjacent_3p downward } 0 10 {J725R:G -> J732R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {J732R:C -> J725R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {J732R:C -> J733R:A: adjacent_5p } 0 13 {J733R:A -> J732R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 5 . . . 2 . 4 . 0 2 . 3 . . 1 . 6 . 4 . . 3 7 . 8 5 10 . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 C151R:U 0 1 C152R:C 0 2 C137R:G 0 3 C138R:A 0 4 C139R:A 0 5 C140R:A 0 [Edges] 0 {C137R:G -> C138R:A: adjacent_5p } 0 1 {C138R:A -> C137R:G: adjacent_3p } 0 2 {C137R:G -> C139R:A: upward } 0 3 {C139R:A -> C137R:G: downward } 0 4 {C137R:G -> C152R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {C152R:C -> C137R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {C138R:A -> C139R:A: adjacent_5p } 0 7 {C139R:A -> C138R:A: adjacent_3p } 0 8 {C139R:A -> C140R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 9 {C140R:A -> C139R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 10 {C140R:A -> C151R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {C151R:U -> C140R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {C140R:A -> C152R:C: outward } 0 13 {C152R:C -> C140R:A: outward } 0 14 {C151R:U -> C152R:C: adjacent_5p upward } 0 15 {C152R:C -> C151R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . . . 11 1 15 . 5 . . 13 2 . 4 . 0 2 . 3 . . 1 . 6 . 4 . . 3 7 . 8 5 10 12 . . 9 . [GraphModel] [Vertices] 0 D351R:U 0 1 D352R:C 0 2 D337R:G 0 3 D338R:A 0 4 D339R:A 0 5 D340R:A 0 [Edges] 0 {D337R:G -> D338R:A: adjacent_5p } 0 1 {D338R:A -> D337R:G: adjacent_3p } 0 2 {D337R:G -> D339R:A: upward } 0 3 {D339R:A -> D337R:G: downward } 0 4 {D337R:G -> D352R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {D352R:C -> D337R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {D338R:A -> D339R:A: adjacent_5p } 0 7 {D339R:A -> D338R:A: adjacent_3p } 0 8 {D339R:A -> D340R:A: adjacent_5p } 0 9 {D340R:A -> D339R:A: adjacent_3p } 0 10 {D340R:A -> D351R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {D351R:U -> D340R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {D340R:A -> D352R:C: outward } 0 13 {D352R:C -> D340R:A: outward } 0 14 {D351R:U -> D352R:C: adjacent_5p } 0 15 {D352R:C -> D351R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . . . 11 1 15 . 5 . . 13 2 . 4 . 0 2 . 3 . . 1 . 6 . 4 . . 3 7 . 8 5 10 12 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 C12R:G 0 1 C13R:U 0 2 C24R:A 0 3 C25R:U 0 4 C26R:A 0 5 C27R:C 0 [Edges] 0 {C12R:G -> C13R:U: adjacent_5p upward } 0 1 {C13R:U -> C12R:G: adjacent_3p downward } 0 2 {C12R:G -> C27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C27R:C -> C12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C13R:U -> C24R:A: pairing antiparallel cis XX Ww/Ww } 0 5 {C24R:A -> C13R:U: pairing antiparallel cis XX Ww/Ww } 0 6 {C24R:A -> C25R:U: adjacent_5p upward } 0 7 {C25R:U -> C24R:A: adjacent_3p downward } 0 8 {C25R:U -> C26R:A: adjacent_5p } 0 9 {C26R:A -> C25R:U: adjacent_3p } 0 10 {C26R:A -> C27R:C: adjacent_5p upward } 0 11 {C27R:C -> C26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 D12R:G 0 1 D13R:U 0 2 D24R:A 0 3 D25R:U 0 4 D26R:A 0 5 D27R:C 0 [Edges] 0 {D12R:G -> D13R:U: adjacent_5p upward } 0 1 {D13R:U -> D12R:G: adjacent_3p downward } 0 2 {D12R:G -> D27R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D27R:C -> D12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D13R:U -> D24R:A: pairing antiparallel cis XX Ww/Ww } 0 5 {D24R:A -> D13R:U: pairing antiparallel cis XX Ww/Ww } 0 6 {D13R:U -> D26R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 7 {D26R:A -> D13R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 8 {D24R:A -> D25R:U: adjacent_5p upward } 0 9 {D25R:U -> D24R:A: adjacent_3p downward } 0 10 {D25R:U -> D26R:A: adjacent_5p } 0 11 {D26R:A -> D25R:U: adjacent_3p } 0 12 {D26R:A -> D27R:C: adjacent_5p upward } 0 13 {D27R:C -> D26R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 D13R:U 0 1 D14R:C 0 2 D23R:G 0 3 D24R:A 0 4 D25R:U 0 5 D26R:A 0 [Edges] 0 {D13R:U -> D14R:C: adjacent_5p upward } 0 1 {D14R:C -> D13R:U: adjacent_3p downward } 0 2 {D13R:U -> D24R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {D24R:A -> D13R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {D13R:U -> D26R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 5 {D26R:A -> D13R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 6 {D14R:C -> D23R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {D23R:G -> D14R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {D23R:G -> D24R:A: adjacent_5p upward } 0 9 {D24R:A -> D23R:G: adjacent_3p downward } 0 10 {D24R:A -> D25R:U: adjacent_5p upward } 0 11 {D25R:U -> D24R:A: adjacent_3p downward } 0 12 {D25R:U -> D26R:A: adjacent_5p } 0 13 {D26R:A -> D25R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 . 4 1 1 . 6 . . . 2 . 7 . 8 . . 3 3 . 9 . 10 . 4 . . . 11 . 12 5 5 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:G 0 2 B19R:U 0 3 B20R:U 0 4 B21R:U 0 5 B22R:U 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> B22R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 3 {B22R:U -> A9R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 4 {A10R:G -> B19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 5 {B19R:U -> A10R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 6 {A10R:G -> B22R:U: outward } 0 7 {B22R:U -> A10R:G: outward } 0 8 {B19R:U -> B20R:U: adjacent_5p } 0 9 {B20R:U -> B19R:U: adjacent_3p } 0 10 {B20R:U -> B21R:U: adjacent_5p } 0 11 {B21R:U -> B20R:U: adjacent_3p } 0 12 {B21R:U -> B22R:U: adjacent_5p } 0 13 {B22R:U -> B21R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . 6 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . . . 11 . 12 5 3 7 . . 13 . [GraphModel] [Vertices] 0 B23R:G 0 1 B24R:G 0 2 A5R:U 0 3 A6R:U 0 4 A7R:U 0 5 A8R:C 0 [Edges] 0 {A5R:U -> A6R:U: adjacent_5p } 0 1 {A6R:U -> A5R:U: adjacent_3p } 0 2 {A5R:U -> B24R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B24R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A6R:U -> A7R:U: adjacent_5p } 0 5 {A7R:U -> A6R:U: adjacent_3p } 0 6 {A7R:U -> A8R:C: adjacent_5p } 0 7 {A8R:C -> A7R:U: adjacent_3p } 0 8 {A8R:C -> B23R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B23R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A8R:C -> B24R:G: outward } 0 11 {B24R:G -> A8R:C: outward } 0 12 {B23R:G -> B24R:G: adjacent_5p upward } 0 13 {B24R:G -> B23R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 9 1 13 . 3 . . 11 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 10 . . 7 . MOLECULE: [GraphModel] [Vertices] 0 C945R:G 0 1 C946R:A 0 2 C922R:G 0 3 C923R:A 0 4 C924R:A 0 5 C925R:U 0 [Edges] 0 {C922R:G -> C923R:A: adjacent_5p upward } 0 1 {C923R:A -> C922R:G: adjacent_3p downward } 0 2 {C922R:G -> C946R:A: pairing antiparallel trans one_hbond 60 Hh/Wh } 0 3 {C946R:A -> C922R:G: pairing antiparallel trans one_hbond 60 Wh/Hh } 0 4 {C923R:A -> C924R:A: adjacent_5p upward } 0 5 {C924R:A -> C923R:A: adjacent_3p downward } 0 6 {C924R:A -> C925R:U: adjacent_5p upward } 0 7 {C925R:U -> C924R:A: adjacent_3p downward } 0 8 {C925R:U -> C945R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 9 {C945R:G -> C925R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 10 {C945R:G -> C946R:A: adjacent_5p } 0 11 {C946R:A -> C945R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . [GraphModel] [Vertices] 0 D1945R:G 0 1 D1946R:A 0 2 D1922R:G 0 3 D1923R:A 0 4 D1924R:A 0 5 D1925R:U 0 [Edges] 0 {D1922R:G -> D1923R:A: adjacent_5p upward } 0 1 {D1923R:A -> D1922R:G: adjacent_3p downward } 0 2 {D1922R:G -> D1946R:A: pairing antiparallel trans one_hbond 60 Hh/Wh } 0 3 {D1946R:A -> D1922R:G: pairing antiparallel trans one_hbond 60 Wh/Hh } 0 4 {D1923R:A -> D1924R:A: adjacent_5p upward } 0 5 {D1924R:A -> D1923R:A: adjacent_3p downward } 0 6 {D1924R:A -> D1925R:U: adjacent_5p upward } 0 7 {D1925R:U -> D1924R:A: adjacent_3p downward } 0 8 {D1925R:U -> D1945R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 9 {D1945R:G -> D1925R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 10 {D1945R:G -> D1946R:A: adjacent_5p } 0 11 {D1946R:A -> D1945R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 C952R:G 0 1 C953R:U 0 2 C957R:A 0 3 C958R:G 0 4 C959R:U 0 5 C960R:C 0 [Edges] 0 {C952R:G -> C953R:U: adjacent_5p upward } 0 1 {C953R:U -> C952R:G: adjacent_3p downward } 0 2 {C952R:G -> C960R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C960R:C -> C952R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C953R:U -> C957R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {C957R:A -> C953R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {C957R:A -> C958R:G: adjacent_5p } 0 7 {C958R:G -> C957R:A: adjacent_3p } 0 8 {C957R:A -> C960R:C: upward } 0 9 {C960R:C -> C957R:A: downward } 0 10 {C958R:G -> C959R:U: adjacent_5p outward } 0 11 {C959R:U -> C958R:G: adjacent_3p outward } 0 12 {C959R:U -> C960R:C: adjacent_5p } 0 13 {C960R:C -> C959R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . MOLECULE: [GraphModel] [Vertices] 0 B554R:G 0 1 B555R:U 0 2 B559R:A 0 3 B560R:A 0 4 B561R:U 0 5 B562R:C 0 [Edges] 0 {B554R:G -> B555R:U: adjacent_5p upward } 0 1 {B555R:U -> B554R:G: adjacent_3p downward } 0 2 {B554R:G -> B562R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B562R:C -> B554R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B555R:U -> B559R:A: pairing antiparallel trans XXIV Ww/Hh } 0 5 {B559R:A -> B555R:U: pairing antiparallel trans XXIV Hh/Ww } 0 6 {B559R:A -> B560R:A: adjacent_5p } 0 7 {B560R:A -> B559R:A: adjacent_3p } 0 8 {B559R:A -> B562R:C: upward } 0 9 {B562R:C -> B559R:A: downward } 0 10 {B560R:A -> B561R:U: adjacent_5p upward } 0 11 {B561R:U -> B560R:A: adjacent_3p downward } 0 12 {B561R:U -> B562R:C: adjacent_5p } 0 13 {B562R:C -> B561R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . MOLECULE: [GraphModel] [Vertices] 0 A16R:A 0 1 A17R:C 0 2 A7R:G 0 3 A8R:A 0 4 A9R:A 0 5 A10R:G 0 [Edges] 0 {A7R:G -> A8R:A: adjacent_5p } 0 1 {A8R:A -> A7R:G: adjacent_3p } 0 2 {A7R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A17R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:A -> A9R:A: adjacent_5p upward } 0 5 {A9R:A -> A8R:A: adjacent_3p downward } 0 6 {A9R:A -> A10R:G: adjacent_5p upward } 0 7 {A10R:G -> A9R:A: adjacent_3p downward } 0 8 {A10R:G -> A16R:A: pairing parallel cis one_hbond Ss/Wh } 0 9 {A16R:A -> A10R:G: pairing parallel cis one_hbond Wh/Ss } 0 10 {A16R:A -> A17R:C: adjacent_5p } 0 11 {A17R:C -> A16R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:C 0 2 A17R:G 0 3 A18R:A 0 4 A19R:A 0 5 A20R:G 0 [Edges] 0 {A3R:C -> A4R:C: adjacent_5p upward } 0 1 {A4R:C -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A17R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A17R:G -> A18R:A: adjacent_5p } 0 7 {A18R:A -> A17R:G: adjacent_3p } 0 8 {A18R:A -> A19R:A: adjacent_5p upward } 0 9 {A19R:A -> A18R:A: adjacent_3p downward } 0 10 {A19R:A -> A20R:G: adjacent_5p upward } 0 11 {A20R:G -> A19R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 B6R:G 0 1 B7R:C 0 2 B14R:G 0 3 B15R:C 0 4 B16R:U 0 5 B17R:A 0 [Edges] 0 {B6R:G -> B7R:C: adjacent_5p upward } 0 1 {B7R:C -> B6R:G: adjacent_3p downward } 0 2 {B6R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B15R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B6R:G -> B17R:A: pairing antiparallel cis one_hbond Ss/Bs } 0 5 {B17R:A -> B6R:G: pairing antiparallel cis one_hbond Bs/Ss } 0 6 {B7R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B14R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B14R:G -> B15R:C: adjacent_5p upward } 0 9 {B15R:C -> B14R:G: adjacent_3p downward } 0 10 {B15R:C -> B16R:U: adjacent_5p upward } 0 11 {B16R:U -> B15R:C: adjacent_3p downward } 0 12 {B16R:U -> B17R:A: adjacent_5p } 0 13 {B17R:A -> B16R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 . 4 1 1 . 6 . . . 2 . 7 . 8 . . 3 3 . 9 . 10 . 4 . . . 11 . 12 5 5 . . . 13 . [GraphModel] [Vertices] 0 B18R:G 0 1 B19R:A 0 2 B50R:U 0 3 B51R:G 0 4 B52R:A 0 5 B53R:C 0 [Edges] 0 {B18R:G -> B19R:A: adjacent_5p upward } 0 1 {B19R:A -> B18R:G: adjacent_3p downward } 0 2 {B18R:G -> B52R:A: outward } 0 3 {B52R:A -> B18R:G: outward } 0 4 {B18R:G -> B53R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {B53R:C -> B18R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {B19R:A -> B50R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B50R:U -> B19R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B50R:U -> B51R:G: adjacent_5p upward } 0 9 {B51R:G -> B50R:U: adjacent_3p downward } 0 10 {B51R:G -> B52R:A: adjacent_5p } 0 11 {B52R:A -> B51R:G: adjacent_3p } 0 12 {B52R:A -> B53R:C: adjacent_5p } 0 13 {B53R:C -> B52R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . 2 4 1 1 . 6 . . . 2 . 7 . 8 . . 3 . . 9 . 10 . 4 3 . . 11 . 12 5 5 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A28R:U 0 1 A29R:G 0 2 A42R:C 0 3 A43R:A 0 4 A44R:C 0 5 A45R:G 0 [Edges] 0 {A28R:U -> A29R:G: adjacent_5p } 0 1 {A29R:G -> A28R:U: adjacent_3p } 0 2 {A28R:U -> A45R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A45R:G -> A28R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A29R:G -> A42R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A42R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A29R:G -> A45R:G: outward } 0 7 {A45R:G -> A29R:G: outward } 0 8 {A42R:C -> A43R:A: adjacent_5p } 0 9 {A43R:A -> A42R:C: adjacent_3p } 0 10 {A43R:A -> A44R:C: adjacent_5p } 0 11 {A44R:C -> A43R:A: adjacent_3p } 0 12 {A44R:C -> A45R:G: adjacent_5p } 0 13 {A45R:G -> A44R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . 6 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . . . 11 . 12 5 3 7 . . 13 . [GraphModel] [Vertices] 0 A54R:U 0 1 A55R:A 0 2 A16R:U 0 3 A17R:A 0 4 A18R:A 0 5 A19R:G 0 [Edges] 0 {A16R:U -> A17R:A: adjacent_5p upward } 0 1 {A17R:A -> A16R:U: adjacent_3p downward } 0 2 {A16R:U -> A55R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {A55R:A -> A16R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {A17R:A -> A18R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 5 {A18R:A -> A17R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 6 {A17R:A -> A54R:U: inward } 0 7 {A54R:U -> A17R:A: inward } 0 8 {A17R:A -> A55R:A: outward } 0 9 {A55R:A -> A17R:A: outward } 0 10 {A18R:A -> A19R:G: adjacent_5p upward } 0 11 {A19R:G -> A18R:A: adjacent_3p downward } 0 12 {A19R:G -> A54R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A54R:U -> A19R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A54R:U -> A55R:A: adjacent_5p } 0 15 {A55R:A -> A54R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . 7 . 13 1 15 . 3 9 . . 2 . 2 . 0 . . 3 6 8 1 . 4 . 4 . . . 5 . 10 5 12 . . . 11 . [GraphModel] [Vertices] 0 A61R:G 0 1 A62R:G 0 2 A8R:U 0 3 A9R:A 0 4 A10R:U 0 5 A11R:C 0 [Edges] 0 {A8R:U -> A9R:A: adjacent_5p } 0 1 {A9R:A -> A8R:U: adjacent_3p } 0 2 {A8R:U -> A62R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A62R:G -> A8R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A9R:A -> A10R:U: adjacent_5p upward } 0 5 {A10R:U -> A9R:A: adjacent_3p downward } 0 6 {A10R:U -> A11R:C: adjacent_5p } 0 7 {A11R:C -> A10R:U: adjacent_3p } 0 8 {A11R:C -> A61R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A61R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A61R:G -> A62R:G: adjacent_5p upward } 0 11 {A62R:G -> A61R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 C21R:G 0 1 C22R:G 0 2 C7R:U 0 3 C8R:U 0 4 C9R:A 0 5 C10R:C 0 [Edges] 0 {C7R:U -> C8R:U: adjacent_5p } 0 1 {C8R:U -> C7R:U: adjacent_3p } 0 2 {C7R:U -> C22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {C22R:G -> C7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {C8R:U -> C9R:A: adjacent_5p } 0 5 {C9R:A -> C8R:U: adjacent_3p } 0 6 {C9R:A -> C10R:C: adjacent_5p upward } 0 7 {C10R:C -> C9R:A: adjacent_3p downward } 0 8 {C9R:A -> C22R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {C22R:G -> C9R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {C10R:C -> C21R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {C21R:G -> C10R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {C21R:G -> C22R:G: adjacent_5p upward } 0 13 {C22R:G -> C21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 3 . 9 . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . 8 . 5 . 6 5 10 . . . 7 . [GraphModel] [Vertices] 0 C22R:G 0 1 C23R:C 0 2 C6R:G 0 3 C7R:U 0 4 C8R:U 0 5 C9R:A 0 [Edges] 0 {C6R:G -> C7R:U: adjacent_5p upward } 0 1 {C7R:U -> C6R:G: adjacent_3p downward } 0 2 {C6R:G -> C23R:C: pairing antiparallel cis Ww/Ww } 0 3 {C23R:C -> C6R:G: pairing antiparallel cis Ww/Ww } 0 4 {C7R:U -> C8R:U: adjacent_5p } 0 5 {C8R:U -> C7R:U: adjacent_3p } 0 6 {C7R:U -> C22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 7 {C22R:G -> C7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 8 {C8R:U -> C9R:A: adjacent_5p } 0 9 {C9R:A -> C8R:U: adjacent_3p } 0 10 {C9R:A -> C22R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {C22R:G -> C9R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {C22R:G -> C23R:C: adjacent_5p upward } 0 13 {C23R:C -> C22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . 7 . 11 1 13 . 3 . . . 2 . 2 . 0 . . 3 6 . 1 . 4 . 4 . . . 5 . 8 5 10 . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A247R:U 0 1 A248R:A 0 2 A224R:U 0 3 A225R:A 0 4 A226R:A 0 5 A227R:G 0 [Edges] 0 {A224R:U -> A225R:A: adjacent_5p } 0 1 {A225R:A -> A224R:U: adjacent_3p } 0 2 {A224R:U -> A248R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {A248R:A -> A224R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {A225R:A -> A226R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 5 {A226R:A -> A225R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 6 {A225R:A -> A247R:U: inward } 0 7 {A247R:U -> A225R:A: inward } 0 8 {A225R:A -> A248R:A: outward } 0 9 {A248R:A -> A225R:A: outward } 0 10 {A226R:A -> A227R:G: adjacent_5p upward } 0 11 {A227R:G -> A226R:A: adjacent_3p downward } 0 12 {A227R:G -> A247R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {A247R:U -> A227R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {A247R:U -> A248R:A: adjacent_5p } 0 15 {A248R:A -> A247R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . 7 . 13 1 15 . 3 9 . . 2 . 2 . 0 . . 3 6 8 1 . 4 . 4 . . . 5 . 10 5 12 . . . 11 . [GraphModel] [Vertices] 0 A249R:U 0 1 A250R:G 0 2 A223R:C 0 3 A224R:U 0 4 A225R:A 0 5 A226R:A 0 [Edges] 0 {A223R:C -> A224R:U: adjacent_5p upward } 0 1 {A224R:U -> A223R:C: adjacent_3p downward } 0 2 {A223R:C -> A250R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A250R:G -> A223R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A224R:U -> A225R:A: adjacent_5p } 0 5 {A225R:A -> A224R:U: adjacent_3p } 0 6 {A225R:A -> A226R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 7 {A226R:A -> A225R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 8 {A226R:A -> A249R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {A249R:U -> A226R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A249R:U -> A250R:G: adjacent_5p } 0 11 {A250R:G -> A249R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . [GraphModel] [Vertices] 0 B247R:U 0 1 B248R:A 0 2 B224R:U 0 3 B225R:A 0 4 B226R:A 0 5 B227R:G 0 [Edges] 0 {B224R:U -> B225R:A: adjacent_5p } 0 1 {B225R:A -> B224R:U: adjacent_3p } 0 2 {B224R:U -> B248R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {B248R:A -> B224R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {B225R:A -> B226R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 5 {B226R:A -> B225R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 6 {B225R:A -> B247R:U: inward } 0 7 {B247R:U -> B225R:A: inward } 0 8 {B225R:A -> B248R:A: outward } 0 9 {B248R:A -> B225R:A: outward } 0 10 {B226R:A -> B227R:G: adjacent_5p upward } 0 11 {B227R:G -> B226R:A: adjacent_3p downward } 0 12 {B227R:G -> B247R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 13 {B247R:U -> B227R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 14 {B247R:U -> B248R:A: adjacent_5p } 0 15 {B248R:A -> B247R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . 7 . 13 1 15 . 3 9 . . 2 . 2 . 0 . . 3 6 8 1 . 4 . 4 . . . 5 . 10 5 12 . . . 11 . [GraphModel] [Vertices] 0 B249R:U 0 1 B250R:G 0 2 B223R:C 0 3 B224R:U 0 4 B225R:A 0 5 B226R:A 0 [Edges] 0 {B223R:C -> B224R:U: adjacent_5p upward } 0 1 {B224R:U -> B223R:C: adjacent_3p downward } 0 2 {B223R:C -> B250R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B250R:G -> B223R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B224R:U -> B225R:A: adjacent_5p } 0 5 {B225R:A -> B224R:U: adjacent_3p } 0 6 {B225R:A -> B226R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 7 {B226R:A -> B225R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 8 {B226R:A -> B249R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {B249R:U -> B226R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {B249R:U -> B250R:G: adjacent_5p } 0 11 {B250R:G -> B249R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 B215R:A 0 1 B216R:A 0 2 B181R:U 0 3 B182R:G 0 4 B183R:A 0 5 B184R:A 0 [Edges] 0 {B181R:U -> B182R:G: adjacent_5p } 0 1 {B182R:G -> B181R:U: adjacent_3p } 0 2 {B181R:U -> B216R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B216R:A -> B181R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B182R:G -> B183R:A: adjacent_5p } 0 5 {B183R:A -> B182R:G: adjacent_3p } 0 6 {B183R:A -> B184R:A: adjacent_5p } 0 7 {B184R:A -> B183R:A: adjacent_3p } 0 8 {B184R:A -> B215R:A: pairing antiparallel trans one_hbond Ww/C8 } 0 9 {B215R:A -> B184R:A: pairing antiparallel trans one_hbond C8/Ww } 0 10 {B215R:A -> B216R:A: adjacent_5p outward } 0 11 {B216R:A -> B215R:A: adjacent_3p outward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:G 0 2 B3R:C 0 3 B4R:U 0 4 B5R:A 0 5 B6R:A 0 [Edges] 0 {A6R:A -> A7R:G: adjacent_5p upward } 0 1 {A7R:G -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B4R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A6R:A -> B6R:A: pairing antiparallel trans one_hbond 41 Ss/Hw } 0 5 {B6R:A -> A6R:A: pairing antiparallel trans one_hbond 41 Hw/Ss } 0 6 {A7R:G -> B3R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B3R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B3R:C -> B4R:U: adjacent_5p } 0 9 {B4R:U -> B3R:C: adjacent_3p } 0 10 {B4R:U -> B5R:A: adjacent_5p } 0 11 {B5R:A -> B4R:U: adjacent_3p } 0 12 {B5R:A -> B6R:A: adjacent_5p } 0 13 {B6R:A -> B5R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 . 4 1 1 . 6 . . . 2 . 7 . 8 . . 3 3 . 9 . 10 . 4 . . . 11 . 12 5 5 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 A12R:G 0 1 A13R:G 0 2 A26R:G 0 3 A27R:G 0 4 A28R:A 0 5 A29R:C 0 [Edges] 0 {A12R:G -> A13R:G: adjacent_5p } 0 1 {A13R:G -> A12R:G: adjacent_3p } 0 2 {A12R:G -> A29R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A29R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:G -> A26R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 5 {A26R:G -> A13R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 6 {A13R:G -> A28R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {A28R:A -> A13R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {A26R:G -> A27R:G: adjacent_5p } 0 9 {A27R:G -> A26R:G: adjacent_3p } 0 10 {A27R:G -> A28R:A: adjacent_5p } 0 11 {A28R:A -> A27R:G: adjacent_3p } 0 12 {A28R:A -> A29R:C: adjacent_5p } 0 13 {A29R:C -> A28R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A13R:G 0 1 A14R:C 0 2 A25R:G 0 3 A26R:G 0 4 A27R:G 0 5 A28R:A 0 [Edges] 0 {A13R:G -> A14R:C: adjacent_5p upward } 0 1 {A14R:C -> A13R:G: adjacent_3p downward } 0 2 {A13R:G -> A26R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 3 {A26R:G -> A13R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 4 {A13R:G -> A28R:A: pairing antiparallel cis VIII Ww/Ww } 0 5 {A28R:A -> A13R:G: pairing antiparallel cis VIII Ww/Ww } 0 6 {A14R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A25R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A14R:C -> A26R:G: pairing antiparallel cis one_hbond 128 Ww/Bs } 0 9 {A26R:G -> A14R:C: pairing antiparallel cis one_hbond 128 Bs/Ww } 0 10 {A25R:G -> A26R:G: adjacent_5p upward } 0 11 {A26R:G -> A25R:G: adjacent_3p downward } 0 12 {A26R:G -> A27R:G: adjacent_5p } 0 13 {A27R:G -> A26R:G: adjacent_3p } 0 14 {A27R:G -> A28R:A: adjacent_5p } 0 15 {A28R:A -> A27R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 . 4 1 1 . 6 8 . . 2 . 7 . 10 . . 3 3 9 11 . 12 . 4 . . . 13 . 14 5 5 . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 C30R:C 0 1 C31R:C 0 2 C51R:G 0 3 C52R:A 0 4 C53R:A 0 5 C54R:G 0 [Edges] 0 {C30R:C -> C31R:C: adjacent_5p upward } 0 1 {C31R:C -> C30R:C: adjacent_3p downward } 0 2 {C30R:C -> C54R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C54R:G -> C30R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C31R:C -> C51R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {C51R:G -> C31R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {C51R:G -> C52R:A: adjacent_5p } 0 7 {C52R:A -> C51R:G: adjacent_3p } 0 8 {C52R:A -> C53R:A: adjacent_5p outward } 0 9 {C53R:A -> C52R:A: adjacent_3p outward } 0 10 {C53R:A -> C54R:G: adjacent_5p } 0 11 {C54R:G -> C53R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 D30R:C 0 1 D31R:C 0 2 D51R:G 0 3 D52R:A 0 4 D53R:A 0 5 D54R:G 0 [Edges] 0 {D30R:C -> D31R:C: adjacent_5p upward } 0 1 {D31R:C -> D30R:C: adjacent_3p downward } 0 2 {D30R:C -> D54R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D54R:G -> D30R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D31R:C -> D51R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {D51R:G -> D31R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {D51R:G -> D52R:A: adjacent_5p } 0 7 {D52R:A -> D51R:G: adjacent_3p } 0 8 {D52R:A -> D53R:A: adjacent_5p upward } 0 9 {D53R:A -> D52R:A: adjacent_3p downward } 0 10 {D53R:A -> D54R:G: adjacent_5p } 0 11 {D54R:G -> D53R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 C1101R:U 0 1 C1102R:C 0 2 C1087R:G 0 3 C1088R:A 0 4 C1089R:G 0 5 C1090R:U 0 [Edges] 0 {C1087R:G -> C1088R:A: adjacent_5p } 0 1 {C1088R:A -> C1087R:G: adjacent_3p } 0 2 {C1087R:G -> C1089R:G: upward } 0 3 {C1089R:G -> C1087R:G: downward } 0 4 {C1087R:G -> C1102R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {C1102R:C -> C1087R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {C1088R:A -> C1089R:G: adjacent_5p } 0 7 {C1089R:G -> C1088R:A: adjacent_3p } 0 8 {C1089R:G -> C1090R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 9 {C1090R:U -> C1089R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 10 {C1090R:U -> C1101R:U: pairing antiparallel cis XVI Ww/Ws } 0 11 {C1101R:U -> C1090R:U: pairing antiparallel cis XVI Ws/Ww } 0 12 {C1101R:U -> C1102R:C: adjacent_5p } 0 13 {C1102R:C -> C1101R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 5 . . . 2 . 4 . 0 2 . 3 . . 1 . 6 . 4 . . 3 7 . 8 5 10 . . . 9 . [GraphModel] [Vertices] 0 D1101R:U 0 1 D1102R:C 0 2 D1087R:G 0 3 D1088R:A 0 4 D1089R:G 0 5 D1090R:U 0 [Edges] 0 {D1087R:G -> D1088R:A: adjacent_5p } 0 1 {D1088R:A -> D1087R:G: adjacent_3p } 0 2 {D1087R:G -> D1089R:G: upward } 0 3 {D1089R:G -> D1087R:G: downward } 0 4 {D1087R:G -> D1102R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {D1102R:C -> D1087R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {D1088R:A -> D1089R:G: adjacent_5p } 0 7 {D1089R:G -> D1088R:A: adjacent_3p } 0 8 {D1089R:G -> D1090R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 9 {D1090R:U -> D1089R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 10 {D1090R:U -> D1101R:U: pairing antiparallel cis XVI Ww/Ws } 0 11 {D1101R:U -> D1090R:U: pairing antiparallel cis XVI Ws/Ww } 0 12 {D1101R:U -> D1102R:C: adjacent_5p } 0 13 {D1102R:C -> D1101R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 5 . . . 2 . 4 . 0 2 . 3 . . 1 . 6 . 4 . . 3 7 . 8 5 10 . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B44R:A 0 1 B45R:C 0 2 B20R:G 0 3 B21R:G 0 4 B22R:A 0 5 B23R:G 0 [Edges] 0 {B20R:G -> B21R:G: adjacent_5p upward } 0 1 {B21R:G -> B20R:G: adjacent_3p downward } 0 2 {B20R:G -> B45R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B45R:C -> B20R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B21R:G -> B22R:A: adjacent_5p } 0 5 {B22R:A -> B21R:G: adjacent_3p } 0 6 {B21R:G -> B44R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {B44R:A -> B21R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {B22R:A -> B23R:G: adjacent_5p } 0 9 {B23R:G -> B22R:A: adjacent_3p } 0 10 {B22R:A -> B44R:A: outward } 0 11 {B44R:A -> B22R:A: outward } 0 12 {B23R:G -> B44R:A: pairing parallel trans one_hbond 57 Sw/Ss } 0 13 {B44R:A -> B23R:G: pairing parallel trans one_hbond 57 Ss/Sw } 0 14 {B44R:A -> B45R:C: adjacent_5p upward } 0 15 {B45R:C -> B44R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . 7 11 13 1 15 . 3 . . . 2 . 2 . 0 . . 3 6 . 1 . 4 . 4 10 . . 5 . 8 5 12 . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 C546R:A 0 1 C548R:C 0 2 C520R:U 0 3 C520.AR:U 0 4 C521R:A 0 5 C522R:G 0 [Edges] 0 {C520R:U -> C520.AR:U: adjacent_5p } 0 1 {C520.AR:U -> C520R:U: adjacent_3p } 0 2 {C520R:U -> C548R:C: pairing antiparallel trans one_hbond 102 Hw/Wh } 0 3 {C548R:C -> C520R:U: pairing antiparallel trans one_hbond 102 Wh/Hw } 0 4 {C520.AR:U -> C521R:A: adjacent_5p } 0 5 {C521R:A -> C520.AR:U: adjacent_3p } 0 6 {C521R:A -> C522R:G: adjacent_5p } 0 7 {C522R:G -> C521R:A: adjacent_3p } 0 8 {C521R:A -> C546R:A: inward } 0 9 {C546R:A -> C521R:A: inward } 0 10 {C521R:A -> C548R:C: outward } 0 11 {C548R:C -> C521R:A: outward } 0 12 {C522R:G -> C546R:A: pairing antiparallel trans one_hbond 60 Hh/Wh } 0 13 {C546R:A -> C522R:G: pairing antiparallel trans one_hbond 60 Wh/Hh } 0 14 {C546R:A -> C548R:C: adjacent_5p } 0 15 {C548R:C -> C546R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . . 9 13 1 15 . 3 . 11 . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 8 10 . 5 . 6 5 12 . . . 7 . [GraphModel] [Vertices] 0 C553R:G 0 1 C554R:U 0 2 C558R:A 0 3 C559R:U 0 4 C560R:U 0 5 C561R:C 0 [Edges] 0 {C553R:G -> C554R:U: adjacent_5p upward } 0 1 {C554R:U -> C553R:G: adjacent_3p downward } 0 2 {C553R:G -> C561R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C561R:C -> C553R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C554R:U -> C558R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {C558R:A -> C554R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {C558R:A -> C559R:U: adjacent_5p } 0 7 {C559R:U -> C558R:A: adjacent_3p } 0 8 {C559R:U -> C560R:U: adjacent_5p upward } 0 9 {C560R:U -> C559R:U: adjacent_3p downward } 0 10 {C560R:U -> C561R:C: adjacent_5p } 0 11 {C561R:C -> C560R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 D546R:A 0 1 D548R:C 0 2 D520R:U 0 3 D520.AR:U 0 4 D521R:A 0 5 D522R:G 0 [Edges] 0 {D520R:U -> D520.AR:U: adjacent_5p } 0 1 {D520.AR:U -> D520R:U: adjacent_3p } 0 2 {D520R:U -> D548R:C: pairing antiparallel trans one_hbond 102 Hw/Wh } 0 3 {D548R:C -> D520R:U: pairing antiparallel trans one_hbond 102 Wh/Hw } 0 4 {D520.AR:U -> D521R:A: adjacent_5p } 0 5 {D521R:A -> D520.AR:U: adjacent_3p } 0 6 {D521R:A -> D522R:G: adjacent_5p } 0 7 {D522R:G -> D521R:A: adjacent_3p } 0 8 {D521R:A -> D546R:A: inward } 0 9 {D546R:A -> D521R:A: inward } 0 10 {D521R:A -> D548R:C: outward } 0 11 {D548R:C -> D521R:A: outward } 0 12 {D522R:G -> D546R:A: pairing antiparallel trans one_hbond 60 Hh/Wh } 0 13 {D546R:A -> D522R:G: pairing antiparallel trans one_hbond 60 Wh/Hh } 0 14 {D546R:A -> D548R:C: adjacent_5p } 0 15 {D548R:C -> D546R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . . 9 13 1 15 . 3 . 11 . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 8 10 . 5 . 6 5 12 . . . 7 . [GraphModel] [Vertices] 0 D553R:G 0 1 D554R:U 0 2 D558R:A 0 3 D559R:U 0 4 D560R:U 0 5 D561R:C 0 [Edges] 0 {D553R:G -> D554R:U: adjacent_5p upward } 0 1 {D554R:U -> D553R:G: adjacent_3p downward } 0 2 {D553R:G -> D561R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D561R:C -> D553R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D554R:U -> D558R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {D558R:A -> D554R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {D558R:A -> D559R:U: adjacent_5p } 0 7 {D559R:U -> D558R:A: adjacent_3p } 0 8 {D559R:U -> D560R:U: adjacent_5p upward } 0 9 {D560R:U -> D559R:U: adjacent_3p downward } 0 10 {D560R:U -> D561R:C: adjacent_5p } 0 11 {D561R:C -> D560R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:G 0 2 A27R:A 0 3 A28R:G 0 4 A29R:G 0 5 A30R:C 0 [Edges] 0 {A7R:G -> A8R:G: adjacent_5p } 0 1 {A8R:G -> A7R:G: adjacent_3p } 0 2 {A7R:G -> A30R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A30R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:G -> A27R:A: pairing antiparallel cis VIII Ww/Ww } 0 5 {A27R:A -> A8R:G: pairing antiparallel cis VIII Ww/Ww } 0 6 {A27R:A -> A28R:G: adjacent_5p upward } 0 7 {A28R:G -> A27R:A: adjacent_3p downward } 0 8 {A28R:G -> A29R:G: adjacent_5p upward } 0 9 {A29R:G -> A28R:G: adjacent_3p downward } 0 10 {A29R:G -> A30R:C: adjacent_5p } 0 11 {A30R:C -> A29R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A12R:C 0 1 A13R:C 0 2 A22R:G 0 3 A23R:U 0 4 A24R:C 0 5 A25R:G 0 [Edges] 0 {A12R:C -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:C: adjacent_3p downward } 0 2 {A12R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:C -> A22R:G: pairing antiparallel cis Ww/Ww } 0 5 {A22R:G -> A13R:C: pairing antiparallel cis Ww/Ww } 0 6 {A22R:G -> A23R:U: adjacent_5p } 0 7 {A23R:U -> A22R:G: adjacent_3p } 0 8 {A23R:U -> A24R:C: adjacent_5p } 0 9 {A24R:C -> A23R:U: adjacent_3p } 0 10 {A24R:C -> A25R:G: adjacent_5p } 0 11 {A25R:G -> A24R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 A28R:C 0 1 A29R:G 0 2 A6R:C 0 3 A7R:U 0 4 A8R:U 0 5 A9R:G 0 [Edges] 0 {A6R:C -> A7R:U: adjacent_5p } 0 1 {A7R:U -> A6R:C: adjacent_3p } 0 2 {A6R:C -> A29R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A29R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:U -> A8R:U: adjacent_5p } 0 5 {A8R:U -> A7R:U: adjacent_3p } 0 6 {A8R:U -> A9R:G: adjacent_5p } 0 7 {A9R:G -> A8R:U: adjacent_3p } 0 8 {A9R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A28R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A28R:C -> A29R:G: adjacent_5p upward } 0 11 {A29R:G -> A28R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 B110R:G 0 1 B111R:G 0 2 A15R:C 0 3 A16R:U 0 4 A17R:U 0 5 A18R:C 0 [Edges] 0 {A15R:C -> A16R:U: adjacent_5p upward } 0 1 {A16R:U -> A15R:C: adjacent_3p downward } 0 2 {A15R:C -> B111R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B111R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A16R:U -> A17R:U: adjacent_5p } 0 5 {A17R:U -> A16R:U: adjacent_3p } 0 6 {A17R:U -> A18R:C: adjacent_5p } 0 7 {A18R:C -> A17R:U: adjacent_3p } 0 8 {A18R:C -> B110R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B110R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A18R:C -> B111R:G: outward } 0 11 {B111R:G -> A18R:C: outward } 0 12 {B110R:G -> B111R:G: adjacent_5p upward } 0 13 {B111R:G -> B110R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 9 1 13 . 3 . . 11 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 10 . . 7 . MOLECULE: [GraphModel] [Vertices] 0 C1101R:U 0 1 C1102R:C 0 2 C1087R:G 0 3 C1088R:A 0 4 C1089R:G 0 5 C1090R:U 0 [Edges] 0 {C1087R:G -> C1088R:A: adjacent_5p } 0 1 {C1088R:A -> C1087R:G: adjacent_3p } 0 2 {C1087R:G -> C1089R:G: upward } 0 3 {C1089R:G -> C1087R:G: downward } 0 4 {C1087R:G -> C1102R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {C1102R:C -> C1087R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {C1088R:A -> C1089R:G: adjacent_5p } 0 7 {C1089R:G -> C1088R:A: adjacent_3p } 0 8 {C1089R:G -> C1090R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 9 {C1090R:U -> C1089R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 10 {C1090R:U -> C1101R:U: pairing antiparallel cis XVI Ww/Ws } 0 11 {C1101R:U -> C1090R:U: pairing antiparallel cis XVI Ws/Ww } 0 12 {C1101R:U -> C1102R:C: adjacent_5p } 0 13 {C1102R:C -> C1101R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 5 . . . 2 . 4 . 0 2 . 3 . . 1 . 6 . 4 . . 3 7 . 8 5 10 . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:G 0 2 A16R:A 0 3 A17R:G 0 4 A18R:G 0 5 A19R:C 0 [Edges] 0 {A4R:G -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A19R:C: pairing antiparallel cis Ww/Ww } 0 3 {A19R:C -> A4R:G: pairing antiparallel cis Ww/Ww } 0 4 {A5R:G -> A16R:A: pairing antiparallel cis VIII Ww/Ww } 0 5 {A16R:A -> A5R:G: pairing antiparallel cis VIII Ww/Ww } 0 6 {A16R:A -> A17R:G: adjacent_5p upward } 0 7 {A17R:G -> A16R:A: adjacent_3p downward } 0 8 {A17R:G -> A18R:G: adjacent_5p } 0 9 {A18R:G -> A17R:G: adjacent_3p } 0 10 {A18R:G -> A19R:C: adjacent_5p } 0 11 {A19R:C -> A18R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 T53R:G 0 1 T54R:U 0 2 T58R:A 0 3 T59R:G 0 4 T60R:U 0 5 T61R:C 0 [Edges] 0 {T53R:G -> T54R:U: adjacent_5p upward } 0 1 {T54R:U -> T53R:G: adjacent_3p downward } 0 2 {T53R:G -> T61R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {T61R:C -> T53R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {T54R:U -> T58R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {T58R:A -> T54R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {T58R:A -> T59R:G: adjacent_5p } 0 7 {T59R:G -> T58R:A: adjacent_3p } 0 8 {T58R:A -> T61R:C: upward } 0 9 {T61R:C -> T58R:A: downward } 0 10 {T59R:G -> T60R:U: adjacent_5p upward } 0 11 {T60R:U -> T59R:G: adjacent_3p downward } 0 12 {T60R:U -> T61R:C: adjacent_5p } 0 13 {T61R:C -> T60R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . MOLECULE: [GraphModel] [Vertices] 0 C408R:G 0 1 C409R:U 0 2 C413R:A 0 3 C414R:U 0 4 C415R:C 0 5 C416R:C 0 [Edges] 0 {C408R:G -> C409R:U: adjacent_5p upward } 0 1 {C409R:U -> C408R:G: adjacent_3p downward } 0 2 {C408R:G -> C416R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C416R:C -> C408R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C409R:U -> C413R:A: pairing antiparallel trans XXIV Ww/Hh } 0 5 {C413R:A -> C409R:U: pairing antiparallel trans XXIV Hh/Ww } 0 6 {C413R:A -> C414R:U: adjacent_5p } 0 7 {C414R:U -> C413R:A: adjacent_3p } 0 8 {C413R:A -> C416R:C: upward } 0 9 {C416R:C -> C413R:A: downward } 0 10 {C414R:U -> C415R:C: adjacent_5p } 0 11 {C415R:C -> C414R:U: adjacent_3p } 0 12 {C415R:C -> C416R:C: adjacent_5p } 0 13 {C416R:C -> C415R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . MOLECULE: [GraphModel] [Vertices] 0 9R:C 0 1 10R:G 0 2 3R:C 0 3 4R:G 0 4 5R:C 0 5 6R:U 0 [Edges] 0 {3R:C -> 4R:G: adjacent_5p upward } 0 1 {4R:G -> 3R:C: adjacent_3p downward } 0 2 {3R:C -> 10R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {10R:G -> 3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {4R:G -> 5R:C: adjacent_5p upward } 0 5 {5R:C -> 4R:G: adjacent_3p downward } 0 6 {4R:G -> 6R:U: pairing antiparallel trans one_hbond Sw/Wh } 0 7 {6R:U -> 4R:G: pairing antiparallel trans one_hbond Wh/Sw } 0 8 {4R:G -> 9R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {9R:C -> 4R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {5R:C -> 6R:U: adjacent_5p } 0 11 {6R:U -> 5R:C: adjacent_3p } 0 12 {6R:U -> 9R:C: pairing antiparallel cis one_hbond 106 Ww/Bs } 0 13 {9R:C -> 6R:U: pairing antiparallel cis one_hbond 106 Bs/Ww } 0 14 {9R:C -> 10R:G: adjacent_5p upward } 0 15 {10R:G -> 9R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . 9 . 13 1 15 . 3 . . . 2 . 2 . 0 . . 3 8 . 1 . 4 6 4 . . . 5 . 10 5 12 . . 7 11 . MOLECULE: [GraphModel] [Vertices] 0 A37R:G 0 1 A38R:U 0 2 A12R:A 0 3 A13R:A 0 4 A14R:A 0 5 A15R:C 0 [Edges] 0 {A12R:A -> A13R:A: adjacent_5p upward } 0 1 {A13R:A -> A12R:A: adjacent_3p downward } 0 2 {A12R:A -> A38R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A38R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A13R:A -> A14R:A: adjacent_5p } 0 5 {A14R:A -> A13R:A: adjacent_3p } 0 6 {A14R:A -> A15R:C: adjacent_5p upward } 0 7 {A15R:C -> A14R:A: adjacent_3p downward } 0 8 {A15R:C -> A37R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A37R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A37R:G -> A38R:U: adjacent_5p upward } 0 11 {A38R:U -> A37R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . [GraphModel] [Vertices] 0 B37R:G 0 1 B38R:U 0 2 B12R:A 0 3 B13R:A 0 4 B14R:A 0 5 B15R:C 0 [Edges] 0 {B12R:A -> B13R:A: adjacent_5p upward } 0 1 {B13R:A -> B12R:A: adjacent_3p downward } 0 2 {B12R:A -> B38R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B38R:U -> B12R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B13R:A -> B14R:A: adjacent_5p } 0 5 {B14R:A -> B13R:A: adjacent_3p } 0 6 {B14R:A -> B15R:C: adjacent_5p upward } 0 7 {B15R:C -> B14R:A: adjacent_3p downward } 0 8 {B14R:A -> B38R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 9 {B38R:U -> B14R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 10 {B15R:C -> B37R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {B37R:G -> B15R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {B37R:G -> B38R:U: adjacent_5p upward } 0 13 {B38R:U -> B37R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 3 . 9 . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . 8 . 5 . 6 5 10 . . . 7 . [GraphModel] [Vertices] 0 B38R:U 0 1 B39R:C 0 2 B11R:G 0 3 B12R:A 0 4 B13R:A 0 5 B14R:A 0 [Edges] 0 {B11R:G -> B12R:A: adjacent_5p upward } 0 1 {B12R:A -> B11R:G: adjacent_3p downward } 0 2 {B11R:G -> B39R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B39R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B12R:A -> B13R:A: adjacent_5p upward } 0 5 {B13R:A -> B12R:A: adjacent_3p downward } 0 6 {B12R:A -> B38R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B38R:U -> B12R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B13R:A -> B14R:A: adjacent_5p } 0 9 {B14R:A -> B13R:A: adjacent_3p } 0 10 {B14R:A -> B38R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 11 {B38R:U -> B14R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 12 {B38R:U -> B39R:C: adjacent_5p upward } 0 13 {B39R:C -> B38R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . 7 . 11 1 13 . 3 . . . 2 . 2 . 0 . . 3 6 . 1 . 4 . 4 . . . 5 . 8 5 10 . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A34R:C 0 1 A35R:G 0 2 A4R:C 0 3 A5R:U 0 4 A6R:A 0 5 A7R:G 0 [Edges] 0 {A4R:C -> A5R:U: adjacent_5p } 0 1 {A5R:U -> A4R:C: adjacent_3p } 0 2 {A4R:C -> A35R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A35R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> A6R:A: adjacent_5p } 0 5 {A6R:A -> A5R:U: adjacent_3p } 0 6 {A6R:A -> A7R:G: adjacent_5p upward } 0 7 {A7R:G -> A6R:A: adjacent_3p downward } 0 8 {A7R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A34R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A34R:C -> A35R:G: adjacent_5p upward } 0 11 {A35R:G -> A34R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 A53R:G 0 1 A54R:U 0 2 A58R:A 0 3 A59R:C 0 4 A60R:U 0 5 A61R:C 0 [Edges] 0 {A53R:G -> A54R:U: adjacent_5p upward } 0 1 {A54R:U -> A53R:G: adjacent_3p downward } 0 2 {A53R:G -> A61R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A61R:C -> A53R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A54R:U -> A58R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 5 {A58R:A -> A54R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 6 {A58R:A -> A59R:C: adjacent_5p } 0 7 {A59R:C -> A58R:A: adjacent_3p } 0 8 {A58R:A -> A61R:C: upward } 0 9 {A61R:C -> A58R:A: downward } 0 10 {A59R:C -> A60R:U: adjacent_5p upward } 0 11 {A60R:U -> A59R:C: adjacent_3p downward } 0 12 {A60R:U -> A61R:C: adjacent_5p } 0 13 {A61R:C -> A60R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . MOLECULE: [GraphModel] [Vertices] 0 B348R:G 0 1 B349R:C 0 2 B313R:G 0 3 B314R:A 0 4 B315R:C 0 5 B316R:C 0 [Edges] 0 {B313R:G -> B314R:A: adjacent_5p upward } 0 1 {B314R:A -> B313R:G: adjacent_3p downward } 0 2 {B313R:G -> B349R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B349R:C -> B313R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B314R:A -> B315R:C: adjacent_5p upward } 0 5 {B315R:C -> B314R:A: adjacent_3p downward } 0 6 {B315R:C -> B316R:C: adjacent_5p } 0 7 {B316R:C -> B315R:C: adjacent_3p } 0 8 {B316R:C -> B348R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B348R:G -> B316R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B348R:G -> B349R:C: adjacent_5p upward } 0 11 {B349R:C -> B348R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 A116R:U 0 1 A117R:G 0 2 A224R:C 0 3 A225R:A 0 4 A226R:A 0 5 A227R:A 0 [Edges] 0 {A116R:U -> A117R:G: adjacent_5p upward } 0 1 {A117R:G -> A116R:U: adjacent_3p downward } 0 2 {A116R:U -> A227R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A227R:A -> A116R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A117R:G -> A224R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A224R:C -> A117R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A117R:G -> A227R:A: outward } 0 7 {A227R:A -> A117R:G: outward } 0 8 {A224R:C -> A225R:A: adjacent_5p } 0 9 {A225R:A -> A224R:C: adjacent_3p } 0 10 {A225R:A -> A226R:A: adjacent_5p } 0 11 {A226R:A -> A225R:A: adjacent_3p } 0 12 {A226R:A -> A227R:A: adjacent_5p } 0 13 {A227R:A -> A226R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . 6 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . . . 11 . 12 5 3 7 . . 13 . [GraphModel] [Vertices] 0 A133R:C 0 1 A134R:G 0 2 A164R:C 0 3 A165R:A 0 4 A166R:A 0 5 A167R:G 0 [Edges] 0 {A133R:C -> A134R:G: adjacent_5p upward } 0 1 {A134R:G -> A133R:C: adjacent_3p downward } 0 2 {A133R:C -> A167R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A167R:G -> A133R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A134R:G -> A164R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A164R:C -> A134R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A164R:C -> A165R:A: adjacent_5p } 0 7 {A165R:A -> A164R:C: adjacent_3p } 0 8 {A164R:C -> A166R:A: pairing parallel cis one_hbond Ss/Hw } 0 9 {A166R:A -> A164R:C: pairing parallel cis one_hbond Hw/Ss } 0 10 {A165R:A -> A166R:A: adjacent_5p } 0 11 {A166R:A -> A165R:A: adjacent_3p } 0 12 {A166R:A -> A167R:G: adjacent_5p } 0 13 {A167R:G -> A166R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 8 . 3 . . 7 . 10 . 4 . . 9 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 A161R:G 0 1 A162R:G 0 2 A136R:C 0 3 A137R:A 0 4 A138R:G 0 5 A139R:C 0 [Edges] 0 {A136R:C -> A137R:A: adjacent_5p } 0 1 {A137R:A -> A136R:C: adjacent_3p } 0 2 {A136R:C -> A162R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A162R:G -> A136R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A137R:A -> A138R:G: adjacent_5p } 0 5 {A138R:G -> A137R:A: adjacent_3p } 0 6 {A138R:G -> A139R:C: adjacent_5p upward } 0 7 {A139R:C -> A138R:G: adjacent_3p downward } 0 8 {A138R:G -> A162R:G: pairing antiparallel cis one_hbond Wh/Sw } 0 9 {A162R:G -> A138R:G: pairing antiparallel cis one_hbond Sw/Wh } 0 10 {A139R:C -> A161R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {A161R:G -> A139R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {A161R:G -> A162R:G: adjacent_5p upward } 0 13 {A162R:G -> A161R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 3 . 9 . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . 8 . 5 . 6 5 10 . . . 7 . [GraphModel] [Vertices] 0 A162R:G 0 1 A163R:G 0 2 A135R:C 0 3 A136R:C 0 4 A137R:A 0 5 A138R:G 0 [Edges] 0 {A135R:C -> A136R:C: adjacent_5p } 0 1 {A136R:C -> A135R:C: adjacent_3p } 0 2 {A135R:C -> A163R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A163R:G -> A135R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A136R:C -> A137R:A: adjacent_5p } 0 5 {A137R:A -> A136R:C: adjacent_3p } 0 6 {A136R:C -> A162R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A162R:G -> A136R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A136R:C -> A163R:G: outward } 0 9 {A163R:G -> A136R:C: outward } 0 10 {A137R:A -> A138R:G: adjacent_5p } 0 11 {A138R:G -> A137R:A: adjacent_3p } 0 12 {A138R:G -> A162R:G: pairing antiparallel cis one_hbond Wh/Sw } 0 13 {A162R:G -> A138R:G: pairing antiparallel cis one_hbond Sw/Wh } 0 14 {A162R:G -> A163R:G: adjacent_5p upward } 0 15 {A163R:G -> A162R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . 7 . 13 1 15 . 3 9 . . 2 . 2 . 0 . . 3 6 8 1 . 4 . 4 . . . 5 . 10 5 12 . . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A10R:C 0 1 A11R:G 0 2 A22R:C 0 3 A23R:U 0 4 A24R:G 0 5 A25R:G 0 [Edges] 0 {A10R:C -> A11R:G: adjacent_5p upward } 0 1 {A11R:G -> A10R:C: adjacent_3p downward } 0 2 {A10R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A22R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A11R:G -> A25R:G: outward } 0 7 {A25R:G -> A11R:G: outward } 0 8 {A22R:C -> A23R:U: adjacent_5p } 0 9 {A23R:U -> A22R:C: adjacent_3p } 0 10 {A23R:U -> A24R:G: adjacent_5p } 0 11 {A24R:G -> A23R:U: adjacent_3p } 0 12 {A24R:G -> A25R:G: adjacent_5p } 0 13 {A25R:G -> A24R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . 6 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . . . 11 . 12 5 3 7 . . 13 . MOLECULE: [GraphModel] [Vertices] 0 '0'98R:A 0 1 '0'99R:A 0 2 '0'78R:G 0 3 '0'79R:G 0 4 '0'80R:A 0 5 '0'81R:G 0 [Edges] 0 {'0'78R:G -> '0'79R:G: adjacent_5p upward } 0 1 {'0'79R:G -> '0'78R:G: adjacent_3p downward } 0 2 {'0'78R:G -> '0'99R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {'0'99R:A -> '0'78R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {'0'79R:G -> '0'80R:A: adjacent_5p } 0 5 {'0'80R:A -> '0'79R:G: adjacent_3p } 0 6 {'0'79R:G -> '0'98R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 7 {'0'98R:A -> '0'79R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 8 {'0'80R:A -> '0'81R:G: adjacent_5p } 0 9 {'0'81R:G -> '0'80R:A: adjacent_3p } 0 10 {'0'80R:A -> '0'98R:A: outward } 0 11 {'0'98R:A -> '0'80R:A: outward } 0 12 {'0'81R:G -> '0'98R:A: pairing parallel trans one_hbond 57 Sw/Ss } 0 13 {'0'98R:A -> '0'81R:G: pairing parallel trans one_hbond 57 Ss/Sw } 0 14 {'0'98R:A -> '0'99R:A: adjacent_5p upward } 0 15 {'0'99R:A -> '0'98R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . 7 11 13 1 15 . 3 . . . 2 . 2 . 0 . . 3 6 . 1 . 4 . 4 10 . . 5 . 8 5 12 . . . 9 . [GraphModel] [Vertices] 0 '0'114R:A 0 1 '0'115R:U 0 2 '0'45R:A 0 3 '0'46R:U 0 4 '0'47R:G 0 5 '0'48R:A 0 [Edges] 0 {'0'45R:A -> '0'46R:U: adjacent_5p } 0 1 {'0'46R:U -> '0'45R:A: adjacent_3p } 0 2 {'0'45R:A -> '0'115R:U: pairing parallel cis XXIII Hh/Ww } 0 3 {'0'115R:U -> '0'45R:A: pairing parallel cis XXIII Ww/Hh } 0 4 {'0'46R:U -> '0'47R:G: adjacent_5p } 0 5 {'0'47R:G -> '0'46R:U: adjacent_3p } 0 6 {'0'47R:G -> '0'48R:A: adjacent_5p } 0 7 {'0'48R:A -> '0'47R:G: adjacent_3p } 0 8 {'0'48R:A -> '0'114R:A: pairing parallel trans II Hh/Hh } 0 9 {'0'114R:A -> '0'48R:A: pairing parallel trans II Hh/Hh } 0 10 {'0'114R:A -> '0'115R:U: adjacent_5p } 0 11 {'0'115R:U -> '0'114R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . [GraphModel] [Vertices] 0 '0'184R:G 0 1 '0'185R:G 0 2 '0'150R:G 0 3 '0'151R:A 0 4 '0'152R:A 0 5 '0'153R:C 0 [Edges] 0 {'0'150R:G -> '0'151R:A: adjacent_5p } 0 1 {'0'151R:A -> '0'150R:G: adjacent_3p } 0 2 {'0'150R:G -> '0'185R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 3 {'0'185R:G -> '0'150R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 4 {'0'151R:A -> '0'152R:A: adjacent_5p upward } 0 5 {'0'152R:A -> '0'151R:A: adjacent_3p downward } 0 6 {'0'152R:A -> '0'153R:C: adjacent_5p upward } 0 7 {'0'153R:C -> '0'152R:A: adjacent_3p downward } 0 8 {'0'152R:A -> '0'185R:G: pairing antiparallel cis VIII Ww/Ww } 0 9 {'0'185R:G -> '0'152R:A: pairing antiparallel cis VIII Ww/Ww } 0 10 {'0'153R:C -> '0'184R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'184R:G -> '0'153R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'184R:G -> '0'185R:G: adjacent_5p upward } 0 13 {'0'185R:G -> '0'184R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 3 . 9 . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . 8 . 5 . 6 5 10 . . . 7 . [GraphModel] [Vertices] 0 '0'265R:U 0 1 '0'266R:G 0 2 '0'245R:C 0 3 '0'246R:G 0 4 '0'247R:A 0 5 '0'248R:A 0 [Edges] 0 {'0'245R:C -> '0'246R:G: adjacent_5p upward } 0 1 {'0'246R:G -> '0'245R:C: adjacent_3p downward } 0 2 {'0'245R:C -> '0'266R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'266R:G -> '0'245R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'246R:G -> '0'247R:A: adjacent_5p } 0 5 {'0'247R:A -> '0'246R:G: adjacent_3p } 0 6 {'0'246R:G -> '0'265R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 7 {'0'265R:U -> '0'246R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 8 {'0'247R:A -> '0'248R:A: adjacent_5p } 0 9 {'0'248R:A -> '0'247R:A: adjacent_3p } 0 10 {'0'247R:A -> '0'265R:U: outward } 0 11 {'0'265R:U -> '0'247R:A: outward } 0 12 {'0'248R:A -> '0'265R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'265R:U -> '0'248R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'265R:U -> '0'266R:G: adjacent_5p upward } 0 15 {'0'266R:G -> '0'265R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . 7 11 13 1 15 . 3 . . . 2 . 2 . 0 . . 3 6 . 1 . 4 . 4 10 . . 5 . 8 5 12 . . . 9 . [GraphModel] [Vertices] 0 '0'334R:G 0 1 '0'335R:U 0 2 '0'339R:A 0 3 '0'340R:A 0 4 '0'341R:C 0 5 '0'342R:C 0 [Edges] 0 {'0'334R:G -> '0'335R:U: adjacent_5p upward } 0 1 {'0'335R:U -> '0'334R:G: adjacent_3p downward } 0 2 {'0'334R:G -> '0'342R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'342R:C -> '0'334R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'335R:U -> '0'339R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 5 {'0'339R:A -> '0'335R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 6 {'0'339R:A -> '0'340R:A: adjacent_5p } 0 7 {'0'340R:A -> '0'339R:A: adjacent_3p } 0 8 {'0'339R:A -> '0'342R:C: upward } 0 9 {'0'342R:C -> '0'339R:A: downward } 0 10 {'0'340R:A -> '0'341R:C: adjacent_5p upward } 0 11 {'0'341R:C -> '0'340R:A: adjacent_3p downward } 0 12 {'0'341R:C -> '0'342R:C: adjacent_5p } 0 13 {'0'342R:C -> '0'341R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . [GraphModel] [Vertices] 0 '0'504R:G 0 1 '0'505R:C 0 2 '0'509R:A 0 3 '0'510R:U 0 4 '0'511R:A 0 5 '0'512R:G 0 [Edges] 0 {'0'504R:G -> '0'505R:C: adjacent_5p upward } 0 1 {'0'505R:C -> '0'504R:G: adjacent_3p downward } 0 2 {'0'504R:G -> '0'512R:G: pairing antiparallel trans 115 Ww/Bh } 0 3 {'0'512R:G -> '0'504R:G: pairing antiparallel trans 115 Bh/Ww } 0 4 {'0'505R:C -> '0'509R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 5 {'0'509R:A -> '0'505R:C: pairing antiparallel trans one_hbond Hw/Ws } 0 6 {'0'509R:A -> '0'510R:U: adjacent_5p } 0 7 {'0'510R:U -> '0'509R:A: adjacent_3p } 0 8 {'0'509R:A -> '0'511R:A: downward } 0 9 {'0'511R:A -> '0'509R:A: upward } 0 10 {'0'509R:A -> '0'512R:G: upward } 0 11 {'0'512R:G -> '0'509R:A: downward } 0 12 {'0'510R:U -> '0'511R:A: adjacent_5p } 0 13 {'0'511R:A -> '0'510R:U: adjacent_3p } 0 14 {'0'511R:A -> '0'512R:G: adjacent_5p } 0 15 {'0'512R:G -> '0'511R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 8 10 3 . . 7 . 12 . 4 . . 9 13 . 14 5 3 . 11 . 15 . [GraphModel] [Vertices] 0 '0'554R:G 0 1 '0'555R:U 0 2 '0'602R:A 0 3 '0'603R:A 0 4 '0'604R:G 0 5 '0'605R:C 0 [Edges] 0 {'0'554R:G -> '0'555R:U: adjacent_5p } 0 1 {'0'555R:U -> '0'554R:G: adjacent_3p } 0 2 {'0'554R:G -> '0'605R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'605R:C -> '0'554R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'555R:U -> '0'602R:A: pairing antiparallel cis XX Ww/Ww } 0 5 {'0'602R:A -> '0'555R:U: pairing antiparallel cis XX Ww/Ww } 0 6 {'0'602R:A -> '0'603R:A: adjacent_5p } 0 7 {'0'603R:A -> '0'602R:A: adjacent_3p } 0 8 {'0'603R:A -> '0'604R:G: adjacent_5p } 0 9 {'0'604R:G -> '0'603R:A: adjacent_3p } 0 10 {'0'604R:G -> '0'605R:C: adjacent_5p } 0 11 {'0'605R:C -> '0'604R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 '0'642R:G 0 1 '0'643R:A 0 2 '0'1355R:A 0 3 '0'1356R:A 0 4 '0'1357R:A 0 5 '0'1358R:A 0 [Edges] 0 {'0'642R:G -> '0'643R:A: adjacent_5p } 0 1 {'0'643R:A -> '0'642R:G: adjacent_3p } 0 2 {'0'642R:G -> '0'1355R:A: upward } 0 3 {'0'1355R:A -> '0'642R:G: downward } 0 4 {'0'642R:G -> '0'1358R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {'0'1358R:A -> '0'642R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {'0'643R:A -> '0'1355R:A: pairing parallel trans II Hh/Hh } 0 7 {'0'1355R:A -> '0'643R:A: pairing parallel trans II Hh/Hh } 0 8 {'0'643R:A -> '0'1358R:A: outward } 0 9 {'0'1358R:A -> '0'643R:A: outward } 0 10 {'0'1355R:A -> '0'1356R:A: adjacent_5p } 0 11 {'0'1356R:A -> '0'1355R:A: adjacent_3p } 0 12 {'0'1356R:A -> '0'1357R:A: adjacent_5p upward } 0 13 {'0'1357R:A -> '0'1356R:A: adjacent_3p downward } 0 14 {'0'1357R:A -> '0'1358R:A: adjacent_5p } 0 15 {'0'1358R:A -> '0'1357R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 2 . . 4 1 1 . 6 . . 8 2 3 7 . 10 . . 3 . . 11 . 12 . 4 . . . 13 . 14 5 5 9 . . 15 . [GraphModel] [Vertices] 0 '0'726R:C 0 1 '0'727R:G 0 2 '0'699R:C 0 3 '0'700R:A 0 4 '0'701R:U 0 5 '0'702R:G 0 [Edges] 0 {'0'699R:C -> '0'700R:A: adjacent_5p } 0 1 {'0'700R:A -> '0'699R:C: adjacent_3p } 0 2 {'0'699R:C -> '0'727R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'727R:G -> '0'699R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'700R:A -> '0'701R:U: adjacent_5p } 0 5 {'0'701R:U -> '0'700R:A: adjacent_3p } 0 6 {'0'701R:U -> '0'702R:G: adjacent_5p } 0 7 {'0'702R:G -> '0'701R:U: adjacent_3p } 0 8 {'0'702R:G -> '0'726R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'726R:C -> '0'702R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'702R:G -> '0'727R:G: outward } 0 11 {'0'727R:G -> '0'702R:G: outward } 0 12 {'0'726R:C -> '0'727R:G: adjacent_5p upward } 0 13 {'0'727R:G -> '0'726R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 9 1 13 . 3 . . 11 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 10 . . 7 . [GraphModel] [Vertices] 0 '0'765R:G 0 1 '0'766R:A 0 2 '0'896R:C 0 3 '0'897R:A 0 4 '0'898R:G 0 5 '0'899R:C 0 [Edges] 0 {'0'765R:G -> '0'766R:A: adjacent_5p } 0 1 {'0'766R:A -> '0'765R:G: adjacent_3p } 0 2 {'0'765R:G -> '0'899R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'899R:C -> '0'765R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'766R:A -> '0'896R:C: pairing antiparallel trans XXV Hh/Ww } 0 5 {'0'896R:C -> '0'766R:A: pairing antiparallel trans XXV Ww/Hh } 0 6 {'0'766R:A -> '0'897R:A: outward } 0 7 {'0'897R:A -> '0'766R:A: outward } 0 8 {'0'896R:C -> '0'897R:A: adjacent_5p upward } 0 9 {'0'897R:A -> '0'896R:C: adjacent_3p downward } 0 10 {'0'897R:A -> '0'898R:G: adjacent_5p } 0 11 {'0'898R:G -> '0'897R:A: adjacent_3p } 0 12 {'0'898R:G -> '0'899R:C: adjacent_5p } 0 13 {'0'899R:C -> '0'898R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 6 . . 2 . 5 . 8 . . 3 . 7 9 . 10 . 4 . . . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 '0'837R:U 0 1 '0'838R:C 0 2 '0'843R:A 0 3 '0'844R:A 0 4 '0'845R:U 0 5 '0'846R:A 0 [Edges] 0 {'0'837R:U -> '0'838R:C: adjacent_5p upward } 0 1 {'0'838R:C -> '0'837R:U: adjacent_3p downward } 0 2 {'0'837R:U -> '0'846R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'846R:A -> '0'837R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'838R:C -> '0'843R:A: pairing parallel trans one_hbond 76 Ss/Wh } 0 5 {'0'843R:A -> '0'838R:C: pairing parallel trans one_hbond 76 Wh/Ss } 0 6 {'0'843R:A -> '0'844R:A: adjacent_5p } 0 7 {'0'844R:A -> '0'843R:A: adjacent_3p } 0 8 {'0'843R:A -> '0'846R:A: outward } 0 9 {'0'846R:A -> '0'843R:A: outward } 0 10 {'0'844R:A -> '0'845R:U: adjacent_5p } 0 11 {'0'845R:U -> '0'844R:A: adjacent_3p } 0 12 {'0'845R:U -> '0'846R:A: adjacent_5p } 0 13 {'0'846R:A -> '0'845R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . [GraphModel] [Vertices] 0 '0'958R:G 0 1 '0'959R:C 0 2 '0'1005R:A 0 3 '0'1006R:A 0 4 '0'1007R:A 0 5 '0'1008R:C 0 [Edges] 0 {'0'958R:G -> '0'959R:C: adjacent_5p upward } 0 1 {'0'959R:C -> '0'958R:G: adjacent_3p downward } 0 2 {'0'958R:G -> '0'1008R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1008R:C -> '0'958R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'959R:C -> '0'1005R:A: pairing antiparallel trans XXV Ww/Hh } 0 5 {'0'1005R:A -> '0'959R:C: pairing antiparallel trans XXV Hh/Ww } 0 6 {'0'1005R:A -> '0'1006R:A: adjacent_5p } 0 7 {'0'1006R:A -> '0'1005R:A: adjacent_3p } 0 8 {'0'1005R:A -> '0'1008R:C: upward } 0 9 {'0'1008R:C -> '0'1005R:A: downward } 0 10 {'0'1006R:A -> '0'1007R:A: adjacent_5p upward } 0 11 {'0'1007R:A -> '0'1006R:A: adjacent_3p downward } 0 12 {'0'1007R:A -> '0'1008R:C: adjacent_5p } 0 13 {'0'1008R:C -> '0'1007R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . [GraphModel] [Vertices] 0 '0'962R:C 0 1 '0'963R:C 0 2 '0'1005R:A 0 3 '0'1006R:A 0 4 '0'1007R:A 0 5 '0'1008R:C 0 [Edges] 0 {'0'962R:C -> '0'963R:C: adjacent_5p upward } 0 1 {'0'963R:C -> '0'962R:C: adjacent_3p downward } 0 2 {'0'962R:C -> '0'1008R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 3 {'0'1008R:C -> '0'962R:C: pairing antiparallel cis one_hbond Ss/Wh } 0 4 {'0'963R:C -> '0'1005R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 5 {'0'1005R:A -> '0'963R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 6 {'0'1005R:A -> '0'1006R:A: adjacent_5p } 0 7 {'0'1006R:A -> '0'1005R:A: adjacent_3p } 0 8 {'0'1005R:A -> '0'1008R:C: upward } 0 9 {'0'1008R:C -> '0'1005R:A: downward } 0 10 {'0'1006R:A -> '0'1007R:A: adjacent_5p upward } 0 11 {'0'1007R:A -> '0'1006R:A: adjacent_3p downward } 0 12 {'0'1007R:A -> '0'1008R:C: adjacent_5p } 0 13 {'0'1008R:C -> '0'1007R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . [GraphModel] [Vertices] 0 '0'1025R:C 0 1 '0'1026R:C 0 2 '0'940R:G 0 3 '0'941R:G 0 4 '0'942R:U 0 5 '0'943R:A 0 [Edges] 0 {'0'940R:G -> '0'941R:G: adjacent_5p upward } 0 1 {'0'941R:G -> '0'940R:G: adjacent_3p downward } 0 2 {'0'940R:G -> '0'1026R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 3 {'0'1026R:C -> '0'940R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 4 {'0'941R:G -> '0'942R:U: adjacent_5p upward } 0 5 {'0'942R:U -> '0'941R:G: adjacent_3p downward } 0 6 {'0'941R:G -> '0'1025R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1025R:C -> '0'941R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'942R:U -> '0'943R:A: adjacent_5p } 0 9 {'0'943R:A -> '0'942R:U: adjacent_3p } 0 10 {'0'943R:A -> '0'1025R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 11 {'0'1025R:C -> '0'943R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 12 {'0'1025R:C -> '0'1026R:C: adjacent_5p upward } 0 13 {'0'1026R:C -> '0'1025R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . 7 . 11 1 13 . 3 . . . 2 . 2 . 0 . . 3 6 . 1 . 4 . 4 . . . 5 . 8 5 10 . . . 9 . [GraphModel] [Vertices] 0 '0'1032R:A 0 1 '0'1033R:C 0 2 '0'937R:C 0 3 '0'938R:G 0 4 '0'939R:A 0 5 '0'940R:G 0 [Edges] 0 {'0'937R:C -> '0'938R:G: adjacent_5p upward } 0 1 {'0'938R:G -> '0'937R:C: adjacent_3p downward } 0 2 {'0'937R:C -> '0'1033R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 3 {'0'1033R:C -> '0'937R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 4 {'0'938R:G -> '0'939R:A: adjacent_5p } 0 5 {'0'939R:A -> '0'938R:G: adjacent_3p } 0 6 {'0'938R:G -> '0'1032R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 7 {'0'1032R:A -> '0'938R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 8 {'0'939R:A -> '0'940R:G: adjacent_5p } 0 9 {'0'940R:G -> '0'939R:A: adjacent_3p } 0 10 {'0'939R:A -> '0'1032R:A: outward } 0 11 {'0'1032R:A -> '0'939R:A: outward } 0 12 {'0'940R:G -> '0'1032R:A: pairing parallel trans one_hbond 57 Sw/Ss } 0 13 {'0'1032R:A -> '0'940R:G: pairing parallel trans one_hbond 57 Ss/Sw } 0 14 {'0'1032R:A -> '0'1033R:C: adjacent_5p upward } 0 15 {'0'1033R:C -> '0'1032R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . 7 11 13 1 15 . 3 . . . 2 . 2 . 0 . . 3 6 . 1 . 4 . 4 10 . . 5 . 8 5 12 . . . 9 . [GraphModel] [Vertices] 0 '0'1243R:C 0 1 '0'1244R:U 0 2 '0'1118R:A 0 3 '0'1119R:G 0 4 '0'1120R:U 0 5 '0'1121R:G 0 [Edges] 0 {'0'1118R:A -> '0'1119R:G: adjacent_5p } 0 1 {'0'1119R:G -> '0'1118R:A: adjacent_3p } 0 2 {'0'1118R:A -> '0'1120R:U: upward } 0 3 {'0'1120R:U -> '0'1118R:A: downward } 0 4 {'0'1118R:A -> '0'1244R:U: pairing antiparallel trans one_hbond 46 Bh/Ws } 0 5 {'0'1244R:U -> '0'1118R:A: pairing antiparallel trans one_hbond 46 Ws/Bh } 0 6 {'0'1119R:G -> '0'1120R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {'0'1120R:U -> '0'1119R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {'0'1119R:G -> '0'1243R:C: inward } 0 9 {'0'1243R:C -> '0'1119R:G: inward } 0 10 {'0'1119R:G -> '0'1244R:U: outward } 0 11 {'0'1244R:U -> '0'1119R:G: outward } 0 12 {'0'1120R:U -> '0'1121R:G: adjacent_5p upward } 0 13 {'0'1121R:G -> '0'1120R:U: adjacent_3p downward } 0 14 {'0'1121R:G -> '0'1243R:C: pairing antiparallel cis XIX Ww/Ww } 0 15 {'0'1243R:C -> '0'1121R:G: pairing antiparallel cis XIX Ww/Ww } 0 16 {'0'1243R:C -> '0'1244R:U: adjacent_5p } 0 17 {'0'1244R:U -> '0'1243R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 16 . 9 . 15 1 17 . 5 11 . . 2 . 4 . 0 2 . 3 8 10 1 . 6 . 4 . . 3 7 . 12 5 14 . . . 13 . [GraphModel] [Vertices] 0 '0'1269R:G 0 1 '0'1270R:U 0 2 '0'1286R:A 0 3 '0'1287R:A 0 4 '0'1288R:U 0 5 '0'1289R:C 0 [Edges] 0 {'0'1269R:G -> '0'1270R:U: adjacent_5p upward } 0 1 {'0'1270R:U -> '0'1269R:G: adjacent_3p downward } 0 2 {'0'1269R:G -> '0'1289R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1289R:C -> '0'1269R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1270R:U -> '0'1286R:A: pairing antiparallel cis XX Ww/Ww } 0 5 {'0'1286R:A -> '0'1270R:U: pairing antiparallel cis XX Ww/Ww } 0 6 {'0'1286R:A -> '0'1287R:A: adjacent_5p } 0 7 {'0'1287R:A -> '0'1286R:A: adjacent_3p } 0 8 {'0'1286R:A -> '0'1289R:C: upward } 0 9 {'0'1289R:C -> '0'1286R:A: downward } 0 10 {'0'1287R:A -> '0'1288R:U: adjacent_5p upward } 0 11 {'0'1288R:U -> '0'1287R:A: adjacent_3p downward } 0 12 {'0'1288R:U -> '0'1289R:C: adjacent_5p } 0 13 {'0'1289R:C -> '0'1288R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . [GraphModel] [Vertices] 0 '0'1387R:G 0 1 '0'1388R:U 0 2 '0'1392R:A 0 3 '0'1393R:A 0 4 '0'1394R:C 0 5 '0'1395R:C 0 [Edges] 0 {'0'1387R:G -> '0'1388R:U: adjacent_5p upward } 0 1 {'0'1388R:U -> '0'1387R:G: adjacent_3p downward } 0 2 {'0'1387R:G -> '0'1395R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1395R:C -> '0'1387R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1388R:U -> '0'1392R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {'0'1392R:A -> '0'1388R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {'0'1392R:A -> '0'1393R:A: adjacent_5p } 0 7 {'0'1393R:A -> '0'1392R:A: adjacent_3p } 0 8 {'0'1392R:A -> '0'1395R:C: upward } 0 9 {'0'1395R:C -> '0'1392R:A: downward } 0 10 {'0'1393R:A -> '0'1394R:C: adjacent_5p upward } 0 11 {'0'1394R:C -> '0'1393R:A: adjacent_3p downward } 0 12 {'0'1394R:C -> '0'1395R:C: adjacent_5p } 0 13 {'0'1395R:C -> '0'1394R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . [GraphModel] [Vertices] 0 '0'1498R:G 0 1 '0'1499R:U 0 2 '0'1504R:A 0 3 '0'1505R:U 0 4 '0'1506R:U 0 5 '0'1507R:C 0 [Edges] 0 {'0'1498R:G -> '0'1499R:U: adjacent_5p upward } 0 1 {'0'1499R:U -> '0'1498R:G: adjacent_3p downward } 0 2 {'0'1498R:G -> '0'1507R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1507R:C -> '0'1498R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1499R:U -> '0'1504R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {'0'1504R:A -> '0'1499R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {'0'1504R:A -> '0'1505R:U: adjacent_5p } 0 7 {'0'1505R:U -> '0'1504R:A: adjacent_3p } 0 8 {'0'1504R:A -> '0'1507R:C: upward } 0 9 {'0'1507R:C -> '0'1504R:A: downward } 0 10 {'0'1505R:U -> '0'1506R:U: adjacent_5p } 0 11 {'0'1506R:U -> '0'1505R:U: adjacent_3p } 0 12 {'0'1506R:U -> '0'1507R:C: adjacent_5p } 0 13 {'0'1507R:C -> '0'1506R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . [GraphModel] [Vertices] 0 '0'1676R:G 0 1 '0'1677R:U 0 2 '0'1448R:A 0 3 '0'1449R:G 0 4 '0'1450R:C 0 5 '0'1451R:C 0 [Edges] 0 {'0'1448R:A -> '0'1449R:G: adjacent_5p } 0 1 {'0'1449R:G -> '0'1448R:A: adjacent_3p } 0 2 {'0'1448R:A -> '0'1451R:C: upward } 0 3 {'0'1451R:C -> '0'1448R:A: downward } 0 4 {'0'1448R:A -> '0'1677R:U: pairing antiparallel trans XXIV Hh/Ws } 0 5 {'0'1677R:U -> '0'1448R:A: pairing antiparallel trans XXIV Ws/Hh } 0 6 {'0'1449R:G -> '0'1450R:C: adjacent_5p upward } 0 7 {'0'1450R:C -> '0'1449R:G: adjacent_3p downward } 0 8 {'0'1450R:C -> '0'1451R:C: adjacent_5p } 0 9 {'0'1451R:C -> '0'1450R:C: adjacent_3p } 0 10 {'0'1451R:C -> '0'1676R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1676R:G -> '0'1451R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1676R:G -> '0'1677R:U: adjacent_5p upward } 0 13 {'0'1677R:U -> '0'1676R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 5 . . . 2 . 4 . 0 . 2 3 . . 1 . 6 . 4 . . . 7 . 8 5 10 . 3 . 9 . [GraphModel] [Vertices] 0 '0'1678R:A 0 1 '0'1679R:C 0 2 '0'1416R:G 0 3 '0'1417R:G 0 4 '0'1418R:U 0 5 '0'1419R:U 0 [Edges] 0 {'0'1416R:G -> '0'1417R:G: adjacent_5p inward } 0 1 {'0'1417R:G -> '0'1416R:G: adjacent_3p inward } 0 2 {'0'1416R:G -> '0'1679R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1679R:C -> '0'1416R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1417R:G -> '0'1418R:U: adjacent_5p } 0 5 {'0'1418R:U -> '0'1417R:G: adjacent_3p } 0 6 {'0'1418R:U -> '0'1419R:U: adjacent_5p } 0 7 {'0'1419R:U -> '0'1418R:U: adjacent_3p } 0 8 {'0'1418R:U -> '0'1678R:A: outward } 0 9 {'0'1678R:A -> '0'1418R:U: outward } 0 10 {'0'1419R:U -> '0'1678R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1678R:A -> '0'1419R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1678R:A -> '0'1679R:C: adjacent_5p upward } 0 13 {'0'1679R:C -> '0'1678R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . 9 11 1 13 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 8 . . 5 . 6 5 10 . . . 7 . [GraphModel] [Vertices] 0 '0'1717R:A 0 1 '0'1718R:G 0 2 '0'1404R:C 0 3 '0'1405R:U 0 4 '0'1406R:A 0 5 '0'1407R:A 0 [Edges] 0 {'0'1404R:C -> '0'1405R:U: adjacent_5p } 0 1 {'0'1405R:U -> '0'1404R:C: adjacent_3p } 0 2 {'0'1404R:C -> '0'1718R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1718R:G -> '0'1404R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1405R:U -> '0'1406R:A: adjacent_5p } 0 5 {'0'1406R:A -> '0'1405R:U: adjacent_3p } 0 6 {'0'1406R:A -> '0'1407R:A: adjacent_5p } 0 7 {'0'1407R:A -> '0'1406R:A: adjacent_3p } 0 8 {'0'1407R:A -> '0'1717R:A: pairing parallel trans I Ww/Ww } 0 9 {'0'1717R:A -> '0'1407R:A: pairing parallel trans I Ww/Ww } 0 10 {'0'1717R:A -> '0'1718R:G: adjacent_5p upward } 0 11 {'0'1718R:G -> '0'1717R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . [GraphModel] [Vertices] 0 '0'1897R:U 0 1 '0'1898R:G 0 2 '0'1939R:U 0 3 '0'1940R:C 0 4 '0'1941R:A 0 5 '0'1942R:A 0 [Edges] 0 {'0'1897R:U -> '0'1898R:G: adjacent_5p upward } 0 1 {'0'1898R:G -> '0'1897R:U: adjacent_3p downward } 0 2 {'0'1897R:U -> '0'1942R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1942R:A -> '0'1897R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1898R:G -> '0'1939R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 5 {'0'1939R:U -> '0'1898R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 6 {'0'1898R:G -> '0'1942R:A: outward } 0 7 {'0'1942R:A -> '0'1898R:G: outward } 0 8 {'0'1939R:U -> '0'1940R:C: adjacent_5p } 0 9 {'0'1940R:C -> '0'1939R:U: adjacent_3p } 0 10 {'0'1940R:C -> '0'1941R:A: adjacent_5p } 0 11 {'0'1941R:A -> '0'1940R:C: adjacent_3p } 0 12 {'0'1941R:A -> '0'1942R:A: adjacent_5p } 0 13 {'0'1942R:A -> '0'1941R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . 6 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . . . 11 . 12 5 3 7 . . 13 . [GraphModel] [Vertices] 0 '0'1933R:G 0 1 '0'1934R:A 0 2 '0'1903R:U 0 3 '0'1904R:A 0 4 '0'1905R:U 0 5 '0'1906R:C 0 [Edges] 0 {'0'1903R:U -> '0'1904R:A: adjacent_5p } 0 1 {'0'1904R:A -> '0'1903R:U: adjacent_3p } 0 2 {'0'1903R:U -> '0'1934R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 3 {'0'1934R:A -> '0'1903R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 4 {'0'1904R:A -> '0'1905R:U: adjacent_5p upward } 0 5 {'0'1905R:U -> '0'1904R:A: adjacent_3p downward } 0 6 {'0'1905R:U -> '0'1906R:C: adjacent_5p upward } 0 7 {'0'1906R:C -> '0'1905R:U: adjacent_3p downward } 0 8 {'0'1905R:U -> '0'1934R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {'0'1934R:A -> '0'1905R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {'0'1906R:C -> '0'1933R:G: pairing antiparallel cis XIX Ww/Ww } 0 11 {'0'1933R:G -> '0'1906R:C: pairing antiparallel cis XIX Ww/Ww } 0 12 {'0'1906R:C -> '0'1934R:A: outward } 0 13 {'0'1934R:A -> '0'1906R:C: outward } 0 14 {'0'1933R:G -> '0'1934R:A: adjacent_5p upward } 0 15 {'0'1934R:A -> '0'1933R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . . . 11 1 15 . 3 . 9 13 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . 8 . 5 . 6 5 10 12 . . 7 . [GraphModel] [Vertices] 0 '0'1934R:A 0 1 '0'1935R:C 0 2 '0'1902R:G 0 3 '0'1903R:U 0 4 '0'1904R:A 0 5 '0'1905R:U 0 [Edges] 0 {'0'1902R:G -> '0'1903R:U: adjacent_5p upward } 0 1 {'0'1903R:U -> '0'1902R:G: adjacent_3p downward } 0 2 {'0'1902R:G -> '0'1935R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1935R:C -> '0'1902R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1903R:U -> '0'1904R:A: adjacent_5p } 0 5 {'0'1904R:A -> '0'1903R:U: adjacent_3p } 0 6 {'0'1903R:U -> '0'1934R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 7 {'0'1934R:A -> '0'1903R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 8 {'0'1904R:A -> '0'1905R:U: adjacent_5p upward } 0 9 {'0'1905R:U -> '0'1904R:A: adjacent_3p downward } 0 10 {'0'1905R:U -> '0'1934R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {'0'1934R:A -> '0'1905R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {'0'1934R:A -> '0'1935R:C: adjacent_5p upward } 0 13 {'0'1935R:C -> '0'1934R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . 7 . 11 1 13 . 3 . . . 2 . 2 . 0 . . 3 6 . 1 . 4 . 4 . . . 5 . 8 5 10 . . . 9 . [GraphModel] [Vertices] 0 '0'1943R:C 0 1 '0'1944R:G 0 2 '0'1893R:C 0 3 '0'1894R:C 0 4 '0'1895R:A 0 5 '0'1896R:G 0 [Edges] 0 {'0'1893R:C -> '0'1894R:C: adjacent_5p } 0 1 {'0'1894R:C -> '0'1893R:C: adjacent_3p } 0 2 {'0'1893R:C -> '0'1944R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1944R:G -> '0'1893R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1894R:C -> '0'1895R:A: adjacent_5p } 0 5 {'0'1895R:A -> '0'1894R:C: adjacent_3p } 0 6 {'0'1895R:A -> '0'1896R:G: adjacent_5p upward } 0 7 {'0'1896R:G -> '0'1895R:A: adjacent_3p downward } 0 8 {'0'1896R:G -> '0'1943R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'1943R:C -> '0'1896R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'1943R:C -> '0'1944R:G: adjacent_5p upward } 0 11 {'0'1944R:G -> '0'1943R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . [GraphModel] [Vertices] 0 '0'1974R:G 0 1 '0'1975R:C 0 2 '0'2005R:G 0 3 '0'2006R:C 0 4 '0'2007R:A 0 5 '0'2008R:U 0 [Edges] 0 {'0'1974R:G -> '0'1975R:C: adjacent_5p upward } 0 1 {'0'1975R:C -> '0'1974R:G: adjacent_3p downward } 0 2 {'0'1974R:G -> '0'2008R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'2008R:U -> '0'1974R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'1975R:C -> '0'2005R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'2005R:G -> '0'1975R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'2005R:G -> '0'2006R:C: adjacent_5p } 0 7 {'0'2006R:C -> '0'2005R:G: adjacent_3p } 0 8 {'0'2005R:G -> '0'2008R:U: upward } 0 9 {'0'2008R:U -> '0'2005R:G: downward } 0 10 {'0'2006R:C -> '0'2007R:A: adjacent_5p inward } 0 11 {'0'2007R:A -> '0'2006R:C: adjacent_3p inward } 0 12 {'0'2007R:A -> '0'2008R:U: adjacent_5p } 0 13 {'0'2008R:U -> '0'2007R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . [GraphModel] [Vertices] 0 '0'2034R:U 0 1 '0'2035R:C 0 2 '0'1744R:G 0 3 '0'1745R:G 0 4 '0'1746R:A 0 5 '0'1747R:A 0 [Edges] 0 {'0'1744R:G -> '0'1745R:G: adjacent_5p } 0 1 {'0'1745R:G -> '0'1744R:G: adjacent_3p } 0 2 {'0'1744R:G -> '0'2035R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2035R:C -> '0'1744R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1745R:G -> '0'1746R:A: adjacent_5p } 0 5 {'0'1746R:A -> '0'1745R:G: adjacent_3p } 0 6 {'0'1745R:G -> '0'2034R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 7 {'0'2034R:U -> '0'1745R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 8 {'0'1746R:A -> '0'1747R:A: adjacent_5p } 0 9 {'0'1747R:A -> '0'1746R:A: adjacent_3p } 0 10 {'0'1746R:A -> '0'2034R:U: outward } 0 11 {'0'2034R:U -> '0'1746R:A: outward } 0 12 {'0'1747R:A -> '0'2034R:U: pairing antiparallel cis XX Ww/Ww } 0 13 {'0'2034R:U -> '0'1747R:A: pairing antiparallel cis XX Ww/Ww } 0 14 {'0'2034R:U -> '0'2035R:C: adjacent_5p upward } 0 15 {'0'2035R:C -> '0'2034R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . 7 11 13 1 15 . 3 . . . 2 . 2 . 0 . . 3 6 . 1 . 4 . 4 10 . . 5 . 8 5 12 . . . 9 . [GraphModel] [Vertices] 0 '0'2068R:G 0 1 '0'2069R:U 0 2 '0'2074R:A 0 3 '0'2075R:G 0 4 '0'2076R:U 0 5 '0'2077R:C 0 [Edges] 0 {'0'2068R:G -> '0'2069R:U: adjacent_5p upward } 0 1 {'0'2069R:U -> '0'2068R:G: adjacent_3p downward } 0 2 {'0'2068R:G -> '0'2077R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2077R:C -> '0'2068R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2069R:U -> '0'2074R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {'0'2074R:A -> '0'2069R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {'0'2074R:A -> '0'2075R:G: adjacent_5p } 0 7 {'0'2075R:G -> '0'2074R:A: adjacent_3p } 0 8 {'0'2074R:A -> '0'2077R:C: upward } 0 9 {'0'2077R:C -> '0'2074R:A: downward } 0 10 {'0'2075R:G -> '0'2076R:U: adjacent_5p upward } 0 11 {'0'2076R:U -> '0'2075R:G: adjacent_3p downward } 0 12 {'0'2076R:U -> '0'2077R:C: adjacent_5p } 0 13 {'0'2077R:C -> '0'2076R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . [GraphModel] [Vertices] 0 '0'2111R:G 0 1 '0'2112R:A 0 2 '0'2473R:U 0 3 '0'2474R:A 0 4 '0'2475R:C 0 5 '0'2476R:C 0 [Edges] 0 {'0'2111R:G -> '0'2112R:A: adjacent_5p upward } 0 1 {'0'2112R:A -> '0'2111R:G: adjacent_3p downward } 0 2 {'0'2111R:G -> '0'2476R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2476R:C -> '0'2111R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2112R:A -> '0'2473R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {'0'2473R:U -> '0'2112R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {'0'2473R:U -> '0'2474R:A: adjacent_5p } 0 7 {'0'2474R:A -> '0'2473R:U: adjacent_3p } 0 8 {'0'2474R:A -> '0'2475R:C: adjacent_5p } 0 9 {'0'2475R:C -> '0'2474R:A: adjacent_3p } 0 10 {'0'2475R:C -> '0'2476R:C: adjacent_5p } 0 11 {'0'2476R:C -> '0'2475R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 '0'2244R:A 0 1 '0'2245R:C 0 2 '0'2256R:G 0 3 '0'2257R:G 0 4 '0'2258R:A 0 5 '0'2259R:C 0 [Edges] 0 {'0'2244R:A -> '0'2245R:C: adjacent_5p upward } 0 1 {'0'2245R:C -> '0'2244R:A: adjacent_3p downward } 0 2 {'0'2244R:A -> '0'2257R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'2257R:G -> '0'2244R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'2244R:A -> '0'2258R:A: outward } 0 5 {'0'2258R:A -> '0'2244R:A: outward } 0 6 {'0'2244R:A -> '0'2259R:C: pairing parallel trans one_hbond 70 Ww/Hw } 0 7 {'0'2259R:C -> '0'2244R:A: pairing parallel trans one_hbond 70 Hw/Ww } 0 8 {'0'2245R:C -> '0'2256R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'2256R:G -> '0'2245R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'2256R:G -> '0'2257R:G: adjacent_5p upward } 0 11 {'0'2257R:G -> '0'2256R:G: adjacent_3p downward } 0 12 {'0'2257R:G -> '0'2258R:A: adjacent_5p } 0 13 {'0'2258R:A -> '0'2257R:G: adjacent_3p } 0 14 {'0'2258R:A -> '0'2259R:C: adjacent_5p } 0 15 {'0'2259R:C -> '0'2258R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 4 6 1 1 . 8 . . . 2 . 9 . 10 . . 3 3 . 11 . 12 . 4 5 . . 13 . 14 5 7 . . . 15 . [GraphModel] [Vertices] 0 '0'2331R:C 0 1 '0'2332R:A 0 2 '0'2352R:G 0 3 '0'2353R:A 0 4 '0'2354R:A 0 5 '0'2355R:G 0 [Edges] 0 {'0'2331R:C -> '0'2332R:A: adjacent_5p upward } 0 1 {'0'2332R:A -> '0'2331R:C: adjacent_3p downward } 0 2 {'0'2331R:C -> '0'2355R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2355R:G -> '0'2331R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2332R:A -> '0'2352R:G: pairing antiparallel trans XI Hh/Ss } 0 5 {'0'2352R:G -> '0'2332R:A: pairing antiparallel trans XI Ss/Hh } 0 6 {'0'2332R:A -> '0'2355R:G: outward } 0 7 {'0'2355R:G -> '0'2332R:A: outward } 0 8 {'0'2352R:G -> '0'2353R:A: adjacent_5p } 0 9 {'0'2353R:A -> '0'2352R:G: adjacent_3p } 0 10 {'0'2353R:A -> '0'2354R:A: adjacent_5p downward } 0 11 {'0'2354R:A -> '0'2353R:A: adjacent_3p upward } 0 12 {'0'2354R:A -> '0'2355R:G: adjacent_5p } 0 13 {'0'2355R:G -> '0'2354R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . 6 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . . . 11 . 12 5 3 7 . . 13 . [GraphModel] [Vertices] 0 '0'2356R:A 0 1 '0'2357R:G 0 2 '0'2366R:C 0 3 '0'2367R:A 0 4 '0'2368R:A 0 5 '0'2369R:A 0 [Edges] 0 {'0'2356R:A -> '0'2357R:G: adjacent_5p upward } 0 1 {'0'2357R:G -> '0'2356R:A: adjacent_3p downward } 0 2 {'0'2356R:A -> '0'2369R:A: pairing parallel trans I Ww/Ww } 0 3 {'0'2369R:A -> '0'2356R:A: pairing parallel trans I Ww/Ww } 0 4 {'0'2357R:G -> '0'2366R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'2366R:C -> '0'2357R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'2366R:C -> '0'2367R:A: adjacent_5p } 0 7 {'0'2367R:A -> '0'2366R:C: adjacent_3p } 0 8 {'0'2367R:A -> '0'2368R:A: adjacent_5p } 0 9 {'0'2368R:A -> '0'2367R:A: adjacent_3p } 0 10 {'0'2367R:A -> '0'2369R:A: outward } 0 11 {'0'2369R:A -> '0'2367R:A: outward } 0 12 {'0'2368R:A -> '0'2369R:A: adjacent_5p } 0 13 {'0'2369R:A -> '0'2368R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 10 4 . . . 9 . 12 5 3 . . 11 13 . [GraphModel] [Vertices] 0 '0'2494R:G 0 1 '0'2495R:U 0 2 '0'2525R:G 0 3 '0'2526R:C 0 4 '0'2527R:U 0 5 '0'2528R:U 0 [Edges] 0 {'0'2494R:G -> '0'2495R:U: adjacent_5p upward } 0 1 {'0'2495R:U -> '0'2494R:G: adjacent_3p downward } 0 2 {'0'2494R:G -> '0'2528R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {'0'2528R:U -> '0'2494R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {'0'2495R:U -> '0'2525R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 5 {'0'2525R:G -> '0'2495R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 6 {'0'2495R:U -> '0'2527R:U: pairing antiparallel cis XVI Ws/Ww } 0 7 {'0'2527R:U -> '0'2495R:U: pairing antiparallel cis XVI Ww/Ws } 0 8 {'0'2525R:G -> '0'2526R:C: adjacent_5p } 0 9 {'0'2526R:C -> '0'2525R:G: adjacent_3p } 0 10 {'0'2525R:G -> '0'2527R:U: pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {'0'2527R:U -> '0'2525R:G: pairing parallel cis one_hbond 89 Hw/Sw } 0 12 {'0'2526R:C -> '0'2527R:U: adjacent_5p } 0 13 {'0'2527R:U -> '0'2526R:C: adjacent_3p } 0 14 {'0'2527R:U -> '0'2528R:U: adjacent_5p upward } 0 15 {'0'2528R:U -> '0'2527R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 '0'2495R:U 0 1 '0'2496R:C 0 2 '0'2524R:G 0 3 '0'2525R:G 0 4 '0'2526R:C 0 5 '0'2527R:U 0 [Edges] 0 {'0'2495R:U -> '0'2496R:C: adjacent_5p upward } 0 1 {'0'2496R:C -> '0'2495R:U: adjacent_3p downward } 0 2 {'0'2495R:U -> '0'2525R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 3 {'0'2525R:G -> '0'2495R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 4 {'0'2495R:U -> '0'2527R:U: pairing antiparallel cis XVI Ws/Ww } 0 5 {'0'2527R:U -> '0'2495R:U: pairing antiparallel cis XVI Ww/Ws } 0 6 {'0'2496R:C -> '0'2524R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2524R:G -> '0'2496R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2524R:G -> '0'2525R:G: adjacent_5p upward } 0 9 {'0'2525R:G -> '0'2524R:G: adjacent_3p downward } 0 10 {'0'2525R:G -> '0'2526R:C: adjacent_5p } 0 11 {'0'2526R:C -> '0'2525R:G: adjacent_3p } 0 12 {'0'2525R:G -> '0'2527R:U: pairing parallel cis one_hbond 89 Sw/Hw } 0 13 {'0'2527R:U -> '0'2525R:G: pairing parallel cis one_hbond 89 Hw/Sw } 0 14 {'0'2526R:C -> '0'2527R:U: adjacent_5p } 0 15 {'0'2527R:U -> '0'2526R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 . 4 1 1 . 6 . . . 2 . 7 . 8 . . 3 3 . 9 . 10 12 4 . . . 11 . 14 5 5 . . 13 15 . [GraphModel] [Vertices] 0 '0'2545R:U 0 1 '0'2546R:U 0 2 '0'2610R:U 0 3 '0'2611R:G 0 4 '0'2612R:A 0 5 '0'2613R:G 0 [Edges] 0 {'0'2545R:U -> '0'2546R:U: adjacent_5p upward } 0 1 {'0'2546R:U -> '0'2545R:U: adjacent_3p downward } 0 2 {'0'2545R:U -> '0'2613R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'2613R:G -> '0'2545R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'2546R:U -> '0'2610R:U: pairing antiparallel cis XVI Ww/Ws } 0 5 {'0'2610R:U -> '0'2546R:U: pairing antiparallel cis XVI Ws/Ww } 0 6 {'0'2610R:U -> '0'2611R:G: adjacent_5p } 0 7 {'0'2611R:G -> '0'2610R:U: adjacent_3p } 0 8 {'0'2611R:G -> '0'2612R:A: adjacent_5p } 0 9 {'0'2612R:A -> '0'2611R:G: adjacent_3p } 0 10 {'0'2612R:A -> '0'2613R:G: adjacent_5p } 0 11 {'0'2613R:G -> '0'2612R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 '0'2547R:C 0 1 '0'2548R:C 0 2 '0'2606R:G 0 3 '0'2607R:U 0 4 '0'2608R:C 0 5 '0'2609R:G 0 [Edges] 0 {'0'2547R:C -> '0'2548R:C: adjacent_5p } 0 1 {'0'2548R:C -> '0'2547R:C: adjacent_3p } 0 2 {'0'2547R:C -> '0'2609R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2609R:G -> '0'2547R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2548R:C -> '0'2606R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'2606R:G -> '0'2548R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'2606R:G -> '0'2607R:U: adjacent_5p } 0 7 {'0'2607R:U -> '0'2606R:G: adjacent_3p } 0 8 {'0'2606R:G -> '0'2609R:G: upward } 0 9 {'0'2609R:G -> '0'2606R:G: downward } 0 10 {'0'2607R:U -> '0'2608R:C: adjacent_5p } 0 11 {'0'2608R:C -> '0'2607R:U: adjacent_3p } 0 12 {'0'2608R:C -> '0'2609R:G: adjacent_5p } 0 13 {'0'2609R:G -> '0'2608R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . [GraphModel] [Vertices] 0 '0'2557R:U 0 1 '0'2558R:G 0 2 '0'2575R:C 0 3 '0'2576R:A 0 4 '0'2577R:A 0 5 '0'2578R:G 0 [Edges] 0 {'0'2557R:U -> '0'2558R:G: adjacent_5p } 0 1 {'0'2558R:G -> '0'2557R:U: adjacent_3p } 0 2 {'0'2557R:U -> '0'2578R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'2578R:G -> '0'2557R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'2558R:G -> '0'2575R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'2575R:C -> '0'2558R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'2575R:C -> '0'2576R:A: adjacent_5p upward } 0 7 {'0'2576R:A -> '0'2575R:C: adjacent_3p downward } 0 8 {'0'2576R:A -> '0'2577R:A: adjacent_5p } 0 9 {'0'2577R:A -> '0'2576R:A: adjacent_3p } 0 10 {'0'2577R:A -> '0'2578R:G: adjacent_5p } 0 11 {'0'2578R:G -> '0'2577R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 '0'2674R:G 0 1 '0'2675R:A 0 2 '0'2810R:G 0 3 '0'2811R:A 0 4 '0'2812R:A 0 5 '0'2813R:A 0 [Edges] 0 {'0'2674R:G -> '0'2675R:A: adjacent_5p } 0 1 {'0'2675R:A -> '0'2674R:G: adjacent_3p } 0 2 {'0'2674R:G -> '0'2810R:G: inward } 0 3 {'0'2810R:G -> '0'2674R:G: inward } 0 4 {'0'2674R:G -> '0'2813R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {'0'2813R:A -> '0'2674R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {'0'2675R:A -> '0'2810R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {'0'2810R:G -> '0'2675R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {'0'2675R:A -> '0'2813R:A: outward } 0 9 {'0'2813R:A -> '0'2675R:A: outward } 0 10 {'0'2810R:G -> '0'2811R:A: adjacent_5p } 0 11 {'0'2811R:A -> '0'2810R:G: adjacent_3p } 0 12 {'0'2811R:A -> '0'2812R:A: adjacent_5p } 0 13 {'0'2812R:A -> '0'2811R:A: adjacent_3p } 0 14 {'0'2811R:A -> '0'2813R:A: downward } 0 15 {'0'2813R:A -> '0'2811R:A: upward } 0 16 {'0'2812R:A -> '0'2813R:A: adjacent_5p } 0 17 {'0'2813R:A -> '0'2812R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 2 . . 4 1 1 . 6 . . 8 2 3 7 . 10 . . 3 . . 11 . 12 14 4 . . . 13 . 16 5 5 9 . 15 17 . [GraphModel] [Vertices] 0 '0'2711R:U 0 1 '0'2712R:G 0 2 '0'2680R:A 0 3 '0'2681R:A 0 4 '0'2682R:C 0 5 '0'2683R:G 0 [Edges] 0 {'0'2680R:A -> '0'2681R:A: adjacent_5p upward } 0 1 {'0'2681R:A -> '0'2680R:A: adjacent_3p downward } 0 2 {'0'2680R:A -> '0'2712R:G: pairing parallel trans one_hbond Ww/Sw } 0 3 {'0'2712R:G -> '0'2680R:A: pairing parallel trans one_hbond Sw/Ww } 0 4 {'0'2681R:A -> '0'2682R:C: adjacent_5p } 0 5 {'0'2682R:C -> '0'2681R:A: adjacent_3p } 0 6 {'0'2682R:C -> '0'2683R:G: adjacent_5p } 0 7 {'0'2683R:G -> '0'2682R:C: adjacent_3p } 0 8 {'0'2682R:C -> '0'2712R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'2712R:G -> '0'2682R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'2683R:G -> '0'2711R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 11 {'0'2711R:U -> '0'2683R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 12 {'0'2683R:G -> '0'2712R:G: outward } 0 13 {'0'2712R:G -> '0'2683R:G: outward } 0 14 {'0'2711R:U -> '0'2712R:G: adjacent_5p upward } 0 15 {'0'2712R:G -> '0'2711R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . . . 11 1 15 . 3 . 9 13 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . 8 . 5 . 6 5 10 12 . . 7 . [GraphModel] [Vertices] 0 '0'2780R:C 0 1 '0'2781R:U 0 2 '0'2791R:U 0 3 '0'2792R:A 0 4 '0'2793R:A 0 5 '0'2794R:G 0 [Edges] 0 {'0'2780R:C -> '0'2781R:U: adjacent_5p upward } 0 1 {'0'2781R:U -> '0'2780R:C: adjacent_3p downward } 0 2 {'0'2780R:C -> '0'2794R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2794R:G -> '0'2780R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2781R:U -> '0'2791R:U: pairing antiparallel trans 81 Ww/Hh } 0 5 {'0'2791R:U -> '0'2781R:U: pairing antiparallel trans 81 Hh/Ww } 0 6 {'0'2781R:U -> '0'2793R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 7 {'0'2793R:A -> '0'2781R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 8 {'0'2791R:U -> '0'2792R:A: adjacent_5p } 0 9 {'0'2792R:A -> '0'2791R:U: adjacent_3p } 0 10 {'0'2791R:U -> '0'2793R:A: pairing parallel cis XXIII Ww/Hh } 0 11 {'0'2793R:A -> '0'2791R:U: pairing parallel cis XXIII Hh/Ww } 0 12 {'0'2792R:A -> '0'2793R:A: adjacent_5p upward } 0 13 {'0'2793R:A -> '0'2792R:A: adjacent_3p downward } 0 14 {'0'2793R:A -> '0'2794R:G: adjacent_5p upward } 0 15 {'0'2794R:G -> '0'2793R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 10 . 3 . . 9 . 12 . 4 . 7 11 13 . 14 5 3 . . . 15 . [GraphModel] [Vertices] 0 '0'2782R:G 0 1 '0'2783R:A 0 2 '0'2789R:U 0 3 '0'2790R:C 0 4 '0'2791R:U 0 5 '0'2792R:A 0 [Edges] 0 {'0'2782R:G -> '0'2783R:A: adjacent_5p } 0 1 {'0'2783R:A -> '0'2782R:G: adjacent_3p } 0 2 {'0'2782R:G -> '0'2789R:U: inward } 0 3 {'0'2789R:U -> '0'2782R:G: inward } 0 4 {'0'2782R:G -> '0'2792R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {'0'2792R:A -> '0'2782R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {'0'2783R:A -> '0'2789R:U: pairing antiparallel trans XXIV Hh/Ws } 0 7 {'0'2789R:U -> '0'2783R:A: pairing antiparallel trans XXIV Ws/Hh } 0 8 {'0'2783R:A -> '0'2792R:A: outward } 0 9 {'0'2792R:A -> '0'2783R:A: outward } 0 10 {'0'2789R:U -> '0'2790R:C: adjacent_5p } 0 11 {'0'2790R:C -> '0'2789R:U: adjacent_3p } 0 12 {'0'2790R:C -> '0'2791R:U: adjacent_5p } 0 13 {'0'2791R:U -> '0'2790R:C: adjacent_3p } 0 14 {'0'2791R:U -> '0'2792R:A: adjacent_5p } 0 15 {'0'2792R:A -> '0'2791R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 2 . . 4 1 1 . 6 . . 8 2 3 7 . 10 . . 3 . . 11 . 12 . 4 . . . 13 . 14 5 5 9 . . 15 . [GraphModel] [Vertices] 0 '0'2851R:G 0 1 '0'2852R:A 0 2 '0'2903R:C 0 3 '0'2904R:U 0 4 '0'2905R:A 0 5 '0'2906R:A 0 [Edges] 0 {'0'2851R:G -> '0'2852R:A: adjacent_5p } 0 1 {'0'2852R:A -> '0'2851R:G: adjacent_3p } 0 2 {'0'2851R:G -> '0'2906R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 3 {'0'2906R:A -> '0'2851R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 4 {'0'2852R:A -> '0'2903R:C: pairing antiparallel trans one_hbond Ww/Hw } 0 5 {'0'2903R:C -> '0'2852R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 6 {'0'2903R:C -> '0'2904R:U: adjacent_5p } 0 7 {'0'2904R:U -> '0'2903R:C: adjacent_3p } 0 8 {'0'2904R:U -> '0'2905R:A: adjacent_5p } 0 9 {'0'2905R:A -> '0'2904R:U: adjacent_3p } 0 10 {'0'2905R:A -> '0'2906R:A: adjacent_5p } 0 11 {'0'2906R:A -> '0'2905R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 '9'3029R:C 0 1 '9'3030R:C 0 2 '9'3050R:G 0 3 '9'3051R:A 0 4 '9'3052R:A 0 5 '9'3053R:G 0 [Edges] 0 {'9'3029R:C -> '9'3030R:C: adjacent_5p upward } 0 1 {'9'3030R:C -> '9'3029R:C: adjacent_3p downward } 0 2 {'9'3029R:C -> '9'3053R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3053R:G -> '9'3029R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3030R:C -> '9'3050R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {'9'3050R:G -> '9'3030R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {'9'3030R:C -> '9'3052R:A: pairing antiparallel cis one_hbond Bs/Wh } 0 7 {'9'3052R:A -> '9'3030R:C: pairing antiparallel cis one_hbond Wh/Bs } 0 8 {'9'3050R:G -> '9'3051R:A: adjacent_5p upward } 0 9 {'9'3051R:A -> '9'3050R:G: adjacent_3p downward } 0 10 {'9'3051R:A -> '9'3052R:A: adjacent_5p } 0 11 {'9'3052R:A -> '9'3051R:A: adjacent_3p } 0 12 {'9'3052R:A -> '9'3053R:G: adjacent_5p upward } 0 13 {'9'3053R:G -> '9'3052R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . 6 . 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . 7 . 11 . 12 5 3 . . . 13 . [GraphModel] [Vertices] 0 '9'3030R:C 0 1 '9'3031R:C 0 2 '9'3049R:G 0 3 '9'3050R:G 0 4 '9'3051R:A 0 5 '9'3052R:A 0 [Edges] 0 {'9'3030R:C -> '9'3031R:C: adjacent_5p } 0 1 {'9'3031R:C -> '9'3030R:C: adjacent_3p } 0 2 {'9'3030R:C -> '9'3050R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3050R:G -> '9'3030R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3030R:C -> '9'3052R:A: pairing antiparallel cis one_hbond Bs/Wh } 0 5 {'9'3052R:A -> '9'3030R:C: pairing antiparallel cis one_hbond Wh/Bs } 0 6 {'9'3031R:C -> '9'3049R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3049R:G -> '9'3031R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3049R:G -> '9'3050R:G: adjacent_5p upward } 0 9 {'9'3050R:G -> '9'3049R:G: adjacent_3p downward } 0 10 {'9'3050R:G -> '9'3051R:A: adjacent_5p upward } 0 11 {'9'3051R:A -> '9'3050R:G: adjacent_3p downward } 0 12 {'9'3051R:A -> '9'3052R:A: adjacent_5p } 0 13 {'9'3052R:A -> '9'3051R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 . 4 1 1 . 6 . . . 2 . 7 . 8 . . 3 3 . 9 . 10 . 4 . . . 11 . 12 5 5 . . . 13 . [GraphModel] [Vertices] 0 '9'3067R:C 0 1 '9'3068R:G 0 2 '9'3011R:A 0 3 '9'3012R:C 0 4 '9'3013R:A 0 5 '9'3014R:G 0 [Edges] 0 {'9'3011R:A -> '9'3012R:C: adjacent_5p } 0 1 {'9'3012R:C -> '9'3011R:A: adjacent_3p } 0 2 {'9'3011R:A -> '9'3068R:G: pairing parallel trans 57 Ss/Ss } 0 3 {'9'3068R:G -> '9'3011R:A: pairing parallel trans 57 Ss/Ss } 0 4 {'9'3012R:C -> '9'3013R:A: adjacent_5p } 0 5 {'9'3013R:A -> '9'3012R:C: adjacent_3p } 0 6 {'9'3013R:A -> '9'3014R:G: adjacent_5p } 0 7 {'9'3014R:G -> '9'3013R:A: adjacent_3p } 0 8 {'9'3014R:G -> '9'3067R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'9'3067R:C -> '9'3014R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'9'3014R:G -> '9'3068R:G: outward } 0 11 {'9'3068R:G -> '9'3014R:G: outward } 0 12 {'9'3067R:C -> '9'3068R:G: adjacent_5p upward } 0 13 {'9'3068R:G -> '9'3067R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 9 1 13 . 3 . . 11 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 10 . . 7 . [GraphModel] [Vertices] 0 '9'3112R:U 0 1 '9'3113R:C 0 2 '9'3066R:G 0 3 '9'3067R:C 0 4 '9'3068R:G 0 5 '9'3069R:U 0 [Edges] 0 {'9'3066R:G -> '9'3067R:C: adjacent_5p upward } 0 1 {'9'3067R:C -> '9'3066R:G: adjacent_3p downward } 0 2 {'9'3066R:G -> '9'3113R:C: pairing antiparallel trans one_hbond 122 Hw/Wh } 0 3 {'9'3113R:C -> '9'3066R:G: pairing antiparallel trans one_hbond 122 Wh/Hw } 0 4 {'9'3067R:C -> '9'3068R:G: adjacent_5p upward } 0 5 {'9'3068R:G -> '9'3067R:C: adjacent_3p downward } 0 6 {'9'3068R:G -> '9'3069R:U: adjacent_5p upward } 0 7 {'9'3069R:U -> '9'3068R:G: adjacent_3p downward } 0 8 {'9'3069R:U -> '9'3112R:U: pairing antiparallel cis XVI Ww/Ws } 0 9 {'9'3112R:U -> '9'3069R:U: pairing antiparallel cis XVI Ws/Ww } 0 10 {'9'3112R:U -> '9'3113R:C: adjacent_5p } 0 11 {'9'3113R:C -> '9'3112R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 A19R:G 0 1 A20R:C 0 2 A28R:G 0 3 A29R:A 0 4 A30R:U 0 5 A31R:C 0 [Edges] 0 {A19R:G -> A20R:C: adjacent_5p pairing antiparallel cis one_hbond Sw/Ss } 0 1 {A20R:C -> A19R:G: adjacent_3p pairing antiparallel cis one_hbond Ss/Sw } 0 2 {A19R:G -> A29R:A: upward } 0 3 {A29R:A -> A19R:G: downward } 0 4 {A19R:G -> A31R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A31R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A20R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A28R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A28R:G -> A29R:A: adjacent_5p } 0 9 {A29R:A -> A28R:G: adjacent_3p } 0 10 {A28R:G -> A31R:C: pairing antiparallel cis one_hbond Sw/Ss } 0 11 {A31R:C -> A28R:G: pairing antiparallel cis one_hbond Ss/Sw } 0 12 {A29R:A -> A30R:U: adjacent_5p } 0 13 {A30R:U -> A29R:A: adjacent_3p } 0 14 {A30R:U -> A31R:C: adjacent_5p } 0 15 {A31R:C -> A30R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 . 4 1 1 . 6 . . . 2 . 7 . 8 . 10 3 3 . 9 . 12 . 4 . . . 13 . 14 5 5 . 11 . 15 . [GraphModel] [Vertices] 0 A39R:C 0 1 A40R:A 0 2 A10R:C 0 3 A11R:G 0 4 A12R:A 0 5 A13R:G 0 [Edges] 0 {A10R:C -> A11R:G: adjacent_5p } 0 1 {A11R:G -> A10R:C: adjacent_3p } 0 2 {A10R:C -> A40R:A: pairing antiparallel trans one_hbond 78 Ws/Wh } 0 3 {A40R:A -> A10R:C: pairing antiparallel trans one_hbond 78 Wh/Ws } 0 4 {A11R:G -> A12R:A: adjacent_5p upward } 0 5 {A12R:A -> A11R:G: adjacent_3p downward } 0 6 {A12R:A -> A13R:G: adjacent_5p } 0 7 {A13R:G -> A12R:A: adjacent_3p } 0 8 {A13R:G -> A39R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A39R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A39R:C -> A40R:A: adjacent_5p upward } 0 11 {A40R:A -> A39R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 A48R:C 0 1 A49R:U 0 2 A362R:G 0 3 A363R:A 0 4 A364R:A 0 5 A365R:U 0 [Edges] 0 {A48R:C -> A49R:U: adjacent_5p } 0 1 {A49R:U -> A48R:C: adjacent_3p } 0 2 {A48R:C -> A365R:U: pairing parallel trans one_hbond Hh/Hw } 0 3 {A365R:U -> A48R:C: pairing parallel trans one_hbond Hw/Hh } 0 4 {A49R:U -> A362R:G: pairing antiparallel cis 93 Ww/Ss } 0 5 {A362R:G -> A49R:U: pairing antiparallel cis 93 Ss/Ww } 0 6 {A49R:U -> A365R:U: pairing antiparallel trans 81 Hh/Ww } 0 7 {A365R:U -> A49R:U: pairing antiparallel trans 81 Ww/Hh } 0 8 {A362R:G -> A363R:A: adjacent_5p } 0 9 {A363R:A -> A362R:G: adjacent_3p } 0 10 {A363R:A -> A364R:A: adjacent_5p upward } 0 11 {A364R:A -> A363R:A: adjacent_3p downward } 0 12 {A364R:A -> A365R:U: adjacent_5p } 0 13 {A365R:U -> A364R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . 6 2 . 5 . 8 . . 3 . . 9 . 10 . 4 . . . 11 . 12 5 3 7 . . 13 . [GraphModel] [Vertices] 0 A63R:C 0 1 A64R:G 0 2 A101R:A 0 3 A102R:G 0 4 A103R:C 0 5 A104R:G 0 [Edges] 0 {A63R:C -> A64R:G: adjacent_5p } 0 1 {A64R:G -> A63R:C: adjacent_3p } 0 2 {A63R:C -> A104R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A104R:G -> A63R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A64R:G -> A101R:A: pairing antiparallel trans one_hbond Wh/Bh } 0 5 {A101R:A -> A64R:G: pairing antiparallel trans one_hbond Bh/Wh } 0 6 {A101R:A -> A102R:G: adjacent_5p upward } 0 7 {A102R:G -> A101R:A: adjacent_3p downward } 0 8 {A102R:G -> A103R:C: adjacent_5p upward } 0 9 {A103R:C -> A102R:G: adjacent_3p downward } 0 10 {A103R:C -> A104R:G: adjacent_5p upward } 0 11 {A104R:G -> A103R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 A103R:C 0 1 A104R:G 0 2 A63R:C 0 3 A64R:G 0 4 A65R:U 0 5 A66R:G 0 [Edges] 0 {A63R:C -> A64R:G: adjacent_5p } 0 1 {A64R:G -> A63R:C: adjacent_3p } 0 2 {A63R:C -> A104R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A104R:G -> A63R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A64R:G -> A65R:U: adjacent_5p } 0 5 {A65R:U -> A64R:G: adjacent_3p } 0 6 {A65R:U -> A66R:G: adjacent_5p } 0 7 {A66R:G -> A65R:U: adjacent_3p } 0 8 {A66R:G -> A103R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A103R:C -> A66R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A103R:C -> A104R:G: adjacent_5p upward } 0 11 {A104R:G -> A103R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . [GraphModel] [Vertices] 0 A194R:C 0 1 A195R:A 0 2 A180R:U 0 3 A181R:G 0 4 A182R:U 0 5 A183R:G 0 [Edges] 0 {A180R:U -> A181R:G: adjacent_5p } 0 1 {A181R:G -> A180R:U: adjacent_3p } 0 2 {A180R:U -> A195R:A: pairing antiparallel trans Ww/Hh } 0 3 {A195R:A -> A180R:U: pairing antiparallel trans Hh/Ww } 0 4 {A181R:G -> A182R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 5 {A182R:U -> A181R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 6 {A181R:G -> A195R:A: outward } 0 7 {A195R:A -> A181R:G: outward } 0 8 {A182R:U -> A183R:G: adjacent_5p upward } 0 9 {A183R:G -> A182R:U: adjacent_3p downward } 0 10 {A183R:G -> A194R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A194R:C -> A183R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A194R:C -> A195R:A: adjacent_5p } 0 13 {A195R:A -> A194R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 3 7 . . 2 . 2 . 0 . . 3 . 6 1 . 4 . 4 . . . 5 . 8 5 10 . . . 9 . [GraphModel] [Vertices] 0 A231R:G 0 1 A232R:G 0 2 A129R:U 0 3 A129.AR:G 0 4 A130R:A 0 5 A131R:C 0 [Edges] 0 {A129R:U -> A129.AR:G: adjacent_5p } 0 1 {A129.AR:G -> A129R:U: adjacent_3p } 0 2 {A129R:U -> A232R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A232R:G -> A129R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A129.AR:G -> A130R:A: adjacent_5p } 0 5 {A130R:A -> A129.AR:G: adjacent_3p } 0 6 {A130R:A -> A131R:C: adjacent_5p } 0 7 {A131R:C -> A130R:A: adjacent_3p } 0 8 {A131R:C -> A231R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A231R:G -> A131R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A131R:C -> A232R:G: outward } 0 11 {A232R:G -> A131R:C: outward } 0 12 {A231R:G -> A232R:G: adjacent_5p upward } 0 13 {A232R:G -> A231R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 9 1 13 . 3 . . 11 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 10 . . 7 . [GraphModel] [Vertices] 0 A274R:A 0 1 A275R:G 0 2 A249R:U 0 3 A250R:A 0 4 A251R:G 0 5 A252R:U 0 [Edges] 0 {A249R:U -> A250R:A: adjacent_5p } 0 1 {A250R:A -> A249R:U: adjacent_3p } 0 2 {A249R:U -> A275R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A275R:G -> A249R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A250R:A -> A251R:G: adjacent_5p } 0 5 {A251R:G -> A250R:A: adjacent_3p } 0 6 {A250R:A -> A252R:U: outward } 0 7 {A252R:U -> A250R:A: outward } 0 8 {A251R:G -> A252R:U: adjacent_5p } 0 9 {A252R:U -> A251R:G: adjacent_3p } 0 10 {A252R:U -> A274R:A: pairing antiparallel cis XX Ww/Ww } 0 11 {A274R:A -> A252R:U: pairing antiparallel cis XX Ww/Ww } 0 12 {A274R:A -> A275R:G: adjacent_5p } 0 13 {A275R:G -> A274R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 6 4 . . . 5 . 8 5 10 . . 7 9 . [GraphModel] [Vertices] 0 A281R:G 0 1 A282R:A 0 2 A243R:A 0 3 A244R:U 0 4 A245R:C 0 5 A246R:A 0 [Edges] 0 {A243R:A -> A244R:U: adjacent_5p } 0 1 {A244R:U -> A243R:A: adjacent_3p } 0 2 {A243R:A -> A245R:C: downward } 0 3 {A245R:C -> A243R:A: upward } 0 4 {A243R:A -> A246R:A: upward } 0 5 {A246R:A -> A243R:A: downward } 0 6 {A243R:A -> A282R:A: pairing antiparallel trans V Ww/Hh } 0 7 {A282R:A -> A243R:A: pairing antiparallel trans V Hh/Ww } 0 8 {A244R:U -> A245R:C: adjacent_5p } 0 9 {A245R:C -> A244R:U: adjacent_3p } 0 10 {A245R:C -> A246R:A: adjacent_5p } 0 11 {A246R:A -> A245R:C: adjacent_3p } 0 12 {A246R:A -> A281R:G: pairing antiparallel trans XI Hh/Ss } 0 13 {A281R:G -> A246R:A: pairing antiparallel trans XI Ss/Hh } 0 14 {A246R:A -> A282R:A: outward } 0 15 {A282R:A -> A246R:A: outward } 0 16 {A281R:G -> A282R:A: adjacent_5p } 0 17 {A282R:A -> A281R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 16 . . . 13 1 17 . 7 . . 15 2 . 6 . 0 2 4 3 . . 1 . 8 . 4 . . 3 9 . 10 5 12 14 5 . 11 . [GraphModel] [Vertices] 0 A283R:C 0 1 A284R:G 0 2 A242R:C 0 3 A243R:A 0 4 A244R:U 0 5 A245R:C 0 [Edges] 0 {A242R:C -> A243R:A: adjacent_5p } 0 1 {A243R:A -> A242R:C: adjacent_3p } 0 2 {A242R:C -> A284R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A284R:G -> A242R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A243R:A -> A244R:U: adjacent_5p } 0 5 {A244R:U -> A243R:A: adjacent_3p } 0 6 {A243R:A -> A245R:C: downward } 0 7 {A245R:C -> A243R:A: upward } 0 8 {A244R:U -> A245R:C: adjacent_5p } 0 9 {A245R:C -> A244R:U: adjacent_3p } 0 10 {A245R:C -> A283R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 11 {A283R:C -> A245R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 12 {A245R:C -> A284R:G: outward } 0 13 {A284R:G -> A245R:C: outward } 0 14 {A283R:C -> A284R:G: adjacent_5p } 0 15 {A284R:G -> A283R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . . . 11 1 15 . 3 . . 13 2 . 2 . 0 . . 3 . . 1 . 4 6 4 . . . 5 . 8 5 10 12 . 7 9 . [GraphModel] [Vertices] 0 A313R:A 0 1 A314R:C 0 2 A113R:G 0 3 A114R:U 0 4 A115R:G 0 5 A116R:A 0 [Edges] 0 {A113R:G -> A114R:U: adjacent_5p upward } 0 1 {A114R:U -> A113R:G: adjacent_3p downward } 0 2 {A113R:G -> A314R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A314R:C -> A113R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A114R:U -> A115R:G: adjacent_5p upward } 0 5 {A115R:G -> A114R:U: adjacent_3p downward } 0 6 {A114R:U -> A313R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A313R:A -> A114R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A115R:G -> A116R:A: adjacent_5p } 0 9 {A116R:A -> A115R:G: adjacent_3p } 0 10 {A115R:G -> A313R:A: outward } 0 11 {A313R:A -> A115R:G: outward } 0 12 {A116R:A -> A313R:A: pairing antiparallel trans one_hbond 40 Wh/Ss } 0 13 {A313R:A -> A116R:A: pairing antiparallel trans one_hbond 40 Ss/Wh } 0 14 {A313R:A -> A314R:C: adjacent_5p upward } 0 15 {A314R:C -> A313R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . 7 11 13 1 15 . 3 . . . 2 . 2 . 0 . . 3 6 . 1 . 4 . 4 10 . . 5 . 8 5 12 . . . 9 . [GraphModel] [Vertices] 0 A321R:A 0 1 A322R:C 0 2 A329R:A 0 3 A330R:C 0 4 A331R:G 0 5 A332R:G 0 [Edges] 0 {A321R:A -> A322R:C: adjacent_5p upward } 0 1 {A322R:C -> A321R:A: adjacent_3p downward } 0 2 {A321R:A -> A332R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {A332R:G -> A321R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A322R:C -> A329R:A: pairing antiparallel trans XXV Ww/Hh } 0 5 {A329R:A -> A322R:C: pairing antiparallel trans XXV Hh/Ww } 0 6 {A329R:A -> A330R:C: adjacent_5p } 0 7 {A330R:C -> A329R:A: adjacent_3p } 0 8 {A329R:A -> A332R:G: upward } 0 9 {A332R:G -> A329R:A: downward } 0 10 {A330R:C -> A331R:G: adjacent_5p } 0 11 {A331R:G -> A330R:C: adjacent_3p } 0 12 {A331R:G -> A332R:G: adjacent_5p } 0 13 {A332R:G -> A331R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . [GraphModel] [Vertices] 0 A515R:G 0 1 A516R:U 0 2 A533R:A 0 3 A534R:U 0 4 A535R:A 0 5 A536R:C 0 [Edges] 0 {A515R:G -> A516R:U: adjacent_5p upward } 0 1 {A516R:U -> A515R:G: adjacent_3p downward } 0 2 {A515R:G -> A536R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A536R:C -> A515R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A516R:U -> A533R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {A533R:A -> A516R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {A533R:A -> A534R:U: adjacent_5p } 0 7 {A534R:U -> A533R:A: adjacent_3p } 0 8 {A533R:A -> A536R:C: upward } 0 9 {A536R:C -> A533R:A: downward } 0 10 {A534R:U -> A535R:A: adjacent_5p } 0 11 {A535R:A -> A534R:U: adjacent_3p } 0 12 {A535R:A -> A536R:C: adjacent_5p } 0 13 {A536R:C -> A535R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . [GraphModel] [Vertices] 0 A597R:G 0 1 A598R:U 0 2 A640R:A 0 3 A641R:U 0 4 A642R:A 0 5 A643R:C 0 [Edges] 0 {A597R:G -> A598R:U: adjacent_5p upward } 0 1 {A598R:U -> A597R:G: adjacent_3p downward } 0 2 {A597R:G -> A643R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A643R:C -> A597R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A598R:U -> A640R:A: pairing antiparallel cis XX Ww/Ww } 0 5 {A640R:A -> A598R:U: pairing antiparallel cis XX Ww/Ww } 0 6 {A640R:A -> A641R:U: adjacent_5p upward } 0 7 {A641R:U -> A640R:A: adjacent_3p downward } 0 8 {A641R:U -> A642R:A: adjacent_5p pairing parallel cis one_hbond Bs/Hw } 0 9 {A642R:A -> A641R:U: adjacent_3p pairing parallel cis one_hbond Hw/Bs } 0 10 {A642R:A -> A643R:C: adjacent_5p upward } 0 11 {A643R:C -> A642R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 A654R:G 0 1 A655R:A 0 2 A751R:U 0 3 A752R:G 0 4 A753R:A 0 5 A754R:C 0 [Edges] 0 {A654R:G -> A655R:A: adjacent_5p upward } 0 1 {A655R:A -> A654R:G: adjacent_3p downward } 0 2 {A654R:G -> A752R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 3 {A752R:G -> A654R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 4 {A654R:G -> A753R:A: outward } 0 5 {A753R:A -> A654R:G: outward } 0 6 {A654R:G -> A754R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A754R:C -> A654R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A655R:A -> A751R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {A751R:U -> A655R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {A751R:U -> A752R:G: adjacent_5p upward } 0 11 {A752R:G -> A751R:U: adjacent_3p downward } 0 12 {A752R:G -> A753R:A: adjacent_5p } 0 13 {A753R:A -> A752R:G: adjacent_3p } 0 14 {A753R:A -> A754R:C: adjacent_5p } 0 15 {A754R:C -> A753R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 4 6 1 1 . 8 . . . 2 . 9 . 10 . . 3 3 . 11 . 12 . 4 5 . . 13 . 14 5 7 . . . 15 . [GraphModel] [Vertices] 0 A704R:A 0 1 A705R:U 0 2 A685R:G 0 3 A686R:U 0 4 A687R:A 0 5 A688R:G 0 [Edges] 0 {A685R:G -> A686R:U: adjacent_5p upward } 0 1 {A686R:U -> A685R:G: adjacent_3p downward } 0 2 {A685R:G -> A705R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 3 {A705R:U -> A685R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 4 {A686R:U -> A687R:A: adjacent_5p } 0 5 {A687R:A -> A686R:U: adjacent_3p } 0 6 {A686R:U -> A704R:A: pairing antiparallel trans XXIV Ws/Hh } 0 7 {A704R:A -> A686R:U: pairing antiparallel trans XXIV Hh/Ws } 0 8 {A687R:A -> A688R:G: adjacent_5p } 0 9 {A688R:G -> A687R:A: adjacent_3p } 0 10 {A687R:A -> A704R:A: outward } 0 11 {A704R:A -> A687R:A: outward } 0 12 {A688R:G -> A704R:A: pairing parallel trans one_hbond Ss/Ss } 0 13 {A704R:A -> A688R:G: pairing parallel trans one_hbond Ss/Ss } 0 14 {A704R:A -> A705R:U: adjacent_5p upward } 0 15 {A705R:U -> A704R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . 7 11 13 1 15 . 3 . . . 2 . 2 . 0 . . 3 6 . 1 . 4 . 4 10 . . 5 . 8 5 12 . . . 9 . [GraphModel] [Vertices] 0 A732R:C 0 1 A733R:A 0 2 A722R:A 0 3 A723R:U 0 4 A724R:G 0 5 A725R:G 0 [Edges] 0 {A722R:A -> A723R:U: adjacent_5p } 0 1 {A723R:U -> A722R:A: adjacent_3p } 0 2 {A722R:A -> A724R:G: outward } 0 3 {A724R:G -> A722R:A: outward } 0 4 {A722R:A -> A733R:A: pairing parallel trans I Ww/Ww } 0 5 {A733R:A -> A722R:A: pairing parallel trans I Ww/Ww } 0 6 {A723R:U -> A724R:G: adjacent_5p } 0 7 {A724R:G -> A723R:U: adjacent_3p } 0 8 {A724R:G -> A725R:G: adjacent_5p upward } 0 9 {A725R:G -> A724R:G: adjacent_3p downward } 0 10 {A725R:G -> A732R:C: pairing antiparallel cis XIX Ww/Ww } 0 11 {A732R:C -> A725R:G: pairing antiparallel cis XIX Ww/Ww } 0 12 {A732R:C -> A733R:A: adjacent_5p } 0 13 {A733R:A -> A732R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 11 1 13 . 5 . . . 2 . 4 . 0 2 . 3 . . 1 . 6 . 4 . . 3 7 . 8 5 10 . . . 9 . [GraphModel] [Vertices] 0 A765R:G 0 1 A766R:A 0 2 A813R:U 0 3 A814R:A 0 4 A815R:A 0 5 A816R:A 0 [Edges] 0 {A765R:G -> A766R:A: adjacent_5p } 0 1 {A766R:A -> A765R:G: adjacent_3p } 0 2 {A765R:G -> A816R:A: pairing antiparallel cis one_hbond 55 Sw/Ww } 0 3 {A816R:A -> A765R:G: pairing antiparallel cis one_hbond 55 Ww/Sw } 0 4 {A766R:A -> A813R:U: pairing antiparallel trans XXIV Hh/Ws } 0 5 {A813R:U -> A766R:A: pairing antiparallel trans XXIV Ws/Hh } 0 6 {A766R:A -> A814R:A: outward } 0 7 {A814R:A -> A766R:A: outward } 0 8 {A813R:U -> A814R:A: adjacent_5p upward } 0 9 {A814R:A -> A813R:U: adjacent_3p downward } 0 10 {A814R:A -> A815R:A: adjacent_5p } 0 11 {A815R:A -> A814R:A: adjacent_3p } 0 12 {A814R:A -> A816R:A: upward } 0 13 {A816R:A -> A814R:A: downward } 0 14 {A815R:A -> A816R:A: adjacent_5p } 0 15 {A816R:A -> A815R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 6 . . 2 . 5 . 8 . . 3 . 7 9 . 10 12 4 . . . 11 . 14 5 3 . . 13 15 . [GraphModel] [Vertices] 0 A1046R:A 0 1 A1047R:G 0 2 A1210R:C 0 3 A1211R:U 0 4 A1212R:U 0 5 A1213R:A 0 [Edges] 0 {A1046R:A -> A1047R:G: adjacent_5p upward } 0 1 {A1047R:G -> A1046R:A: adjacent_3p downward } 0 2 {A1046R:A -> A1211R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 3 {A1211R:U -> A1046R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 4 {A1046R:A -> A1213R:A: pairing parallel trans one_hbond Ww/Ww } 0 5 {A1213R:A -> A1046R:A: pairing parallel trans one_hbond Ww/Ww } 0 6 {A1047R:G -> A1210R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1210R:C -> A1047R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1210R:C -> A1211R:U: adjacent_5p upward } 0 9 {A1211R:U -> A1210R:C: adjacent_3p downward } 0 10 {A1211R:U -> A1212R:U: adjacent_5p } 0 11 {A1212R:U -> A1211R:U: adjacent_3p } 0 12 {A1212R:U -> A1213R:A: adjacent_5p } 0 13 {A1213R:A -> A1212R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 . 4 1 1 . 6 . . . 2 . 7 . 8 . . 3 3 . 9 . 10 . 4 . . . 11 . 12 5 5 . . . 13 . [GraphModel] [Vertices] 0 A1199R:U 0 1 A1200R:C 0 2 A1055R:A 0 3 A1056R:U 0 4 A1057R:G 0 5 A1058R:G 0 [Edges] 0 {A1055R:A -> A1056R:U: adjacent_5p upward } 0 1 {A1056R:U -> A1055R:A: adjacent_3p downward } 0 2 {A1055R:A -> A1200R:C: pairing antiparallel trans XXV Hh/Ww } 0 3 {A1200R:C -> A1055R:A: pairing antiparallel trans XXV Ww/Hh } 0 4 {A1056R:U -> A1057R:G: adjacent_5p } 0 5 {A1057R:G -> A1056R:U: adjacent_3p } 0 6 {A1057R:G -> A1058R:G: adjacent_5p upward } 0 7 {A1058R:G -> A1057R:G: adjacent_3p downward } 0 8 {A1058R:G -> A1199R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {A1199R:U -> A1058R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {A1199R:U -> A1200R:C: adjacent_5p } 0 11 {A1200R:C -> A1199R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . [GraphModel] [Vertices] 0 A1205R:U 0 1 A1206R:G 0 2 A1052R:U 0 3 A1053R:G 0 4 A1054R:C 0 5 A1055R:A 0 [Edges] 0 {A1052R:U -> A1053R:G: adjacent_5p } 0 1 {A1053R:G -> A1052R:U: adjacent_3p } 0 2 {A1052R:U -> A1206R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A1206R:G -> A1052R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A1053R:G -> A1054R:C: adjacent_5p } 0 5 {A1054R:C -> A1053R:G: adjacent_3p } 0 6 {A1054R:C -> A1055R:A: adjacent_5p } 0 7 {A1055R:A -> A1054R:C: adjacent_3p } 0 8 {A1055R:A -> A1205R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 9 {A1205R:U -> A1055R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 10 {A1055R:A -> A1206R:G: outward } 0 11 {A1206R:G -> A1055R:A: outward } 0 12 {A1205R:U -> A1206R:G: adjacent_5p } 0 13 {A1206R:G -> A1205R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 9 1 13 . 3 . . 11 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 10 . . 7 . MOLECULE: [GraphModel] [Vertices] 0 A846R:C 0 1 A847R:U 0 2 A864R:A 0 3 A865R:A 0 4 A866R:U 0 5 A867R:G 0 [Edges] 0 {A846R:C -> A847R:U: adjacent_5p upward } 0 1 {A847R:U -> A846R:C: adjacent_3p downward } 0 2 {A846R:C -> A867R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A867R:G -> A846R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A847R:U -> A864R:A: pairing antiparallel cis XX Ww/Ww } 0 5 {A864R:A -> A847R:U: pairing antiparallel cis XX Ww/Ww } 0 6 {A864R:A -> A865R:A: adjacent_5p } 0 7 {A865R:A -> A864R:A: adjacent_3p } 0 8 {A865R:A -> A866R:U: adjacent_5p } 0 9 {A866R:U -> A865R:A: adjacent_3p } 0 10 {A865R:A -> A867R:G: downward } 0 11 {A867R:G -> A865R:A: upward } 0 12 {A866R:U -> A867R:G: adjacent_5p } 0 13 {A867R:G -> A866R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 10 4 . . . 9 . 12 5 3 . . 11 13 . [GraphModel] [Vertices] 0 A864R:A 0 1 A865R:A 0 2 A844R:U 0 3 A845R:G 0 4 A846R:C 0 5 A847R:U 0 [Edges] 0 {A844R:U -> A845R:G: adjacent_5p } 0 1 {A845R:G -> A844R:U: adjacent_3p } 0 2 {A844R:U -> A865R:A: pairing parallel trans XXI Ws/Ww } 0 3 {A865R:A -> A844R:U: pairing parallel trans XXI Ww/Ws } 0 4 {A845R:G -> A846R:C: adjacent_5p } 0 5 {A846R:C -> A845R:G: adjacent_3p } 0 6 {A846R:C -> A847R:U: adjacent_5p upward } 0 7 {A847R:U -> A846R:C: adjacent_3p downward } 0 8 {A847R:U -> A864R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A864R:A -> A847R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A864R:A -> A865R:A: adjacent_5p } 0 11 {A865R:A -> A864R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . [GraphModel] [Vertices] 0 A868R:C 0 1 A869R:C 0 2 B877R:G 0 3 B878R:A 0 4 B879R:U 0 5 B880R:G 0 [Edges] 0 {A868R:C -> A869R:C: adjacent_5p upward } 0 1 {A869R:C -> A868R:C: adjacent_3p downward } 0 2 {A868R:C -> B880R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B880R:G -> A868R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A869R:C -> B877R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {B877R:G -> A869R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {B877R:G -> B878R:A: adjacent_5p } 0 7 {B878R:A -> B877R:G: adjacent_3p } 0 8 {B878R:A -> B879R:U: adjacent_5p } 0 9 {B879R:U -> B878R:A: adjacent_3p } 0 10 {B878R:A -> B880R:G: downward } 0 11 {B880R:G -> B878R:A: upward } 0 12 {B879R:U -> B880R:G: adjacent_5p } 0 13 {B880R:G -> B879R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 10 4 . . . 9 . 12 5 3 . . 11 13 . [GraphModel] [Vertices] 0 B877R:G 0 1 B878R:A 0 2 A866R:U 0 3 A867R:G 0 4 A868R:C 0 5 A869R:C 0 [Edges] 0 {A866R:U -> A867R:G: adjacent_5p } 0 1 {A867R:G -> A866R:U: adjacent_3p } 0 2 {A866R:U -> B878R:A: pairing parallel trans XXI Ws/Ww } 0 3 {B878R:A -> A866R:U: pairing parallel trans XXI Ww/Ws } 0 4 {A867R:G -> A868R:C: adjacent_5p } 0 5 {A868R:C -> A867R:G: adjacent_3p } 0 6 {A868R:C -> A869R:C: adjacent_5p upward } 0 7 {A869R:C -> A868R:C: adjacent_3p downward } 0 8 {A869R:C -> B877R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B877R:G -> A869R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B877R:G -> B878R:A: adjacent_5p } 0 11 {B878R:A -> B877R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 C151R:U 0 1 C152R:C 0 2 C137R:G 0 3 C138R:A 0 4 C139R:G 0 5 C140R:U 0 [Edges] 0 {C137R:G -> C138R:A: adjacent_5p } 0 1 {C138R:A -> C137R:G: adjacent_3p } 0 2 {C137R:G -> C139R:G: upward } 0 3 {C139R:G -> C137R:G: downward } 0 4 {C137R:G -> C152R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {C152R:C -> C137R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {C138R:A -> C139R:G: adjacent_5p } 0 7 {C139R:G -> C138R:A: adjacent_3p } 0 8 {C139R:G -> C140R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 9 {C140R:U -> C139R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 10 {C139R:G -> C151R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 11 {C151R:U -> C139R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 12 {C140R:U -> C151R:U: pairing antiparallel cis XVI Ww/Ws } 0 13 {C151R:U -> C140R:U: pairing antiparallel cis XVI Ws/Ww } 0 14 {C140R:U -> C152R:C: outward } 0 15 {C152R:C -> C140R:U: outward } 0 16 {C151R:U -> C152R:C: adjacent_5p } 0 17 {C152R:C -> C151R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 16 . . 11 13 1 17 . 5 . . 15 2 . 4 . 0 2 . 3 . . 1 . 6 . 4 10 . 3 7 . 8 5 12 14 . . 9 . [GraphModel] [Vertices] 0 D351R:U 0 1 D352R:C 0 2 D337R:G 0 3 D338R:A 0 4 D339R:G 0 5 D340R:U 0 [Edges] 0 {D337R:G -> D338R:A: adjacent_5p } 0 1 {D338R:A -> D337R:G: adjacent_3p } 0 2 {D337R:G -> D339R:G: upward } 0 3 {D339R:G -> D337R:G: downward } 0 4 {D337R:G -> D352R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {D352R:C -> D337R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {D338R:A -> D339R:G: adjacent_5p } 0 7 {D339R:G -> D338R:A: adjacent_3p } 0 8 {D339R:G -> D340R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 9 {D340R:U -> D339R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 10 {D340R:U -> D351R:U: pairing antiparallel cis XVI Ww/Ws } 0 11 {D351R:U -> D340R:U: pairing antiparallel cis XVI Ws/Ww } 0 12 {D340R:U -> D352R:C: outward } 0 13 {D352R:C -> D340R:U: outward } 0 14 {D351R:U -> D352R:C: adjacent_5p } 0 15 {D352R:C -> D351R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 14 . . . 11 1 15 . 5 . . 13 2 . 4 . 0 2 . 3 . . 1 . 6 . 4 . . 3 7 . 8 5 10 12 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 C8R:G 0 1 C9R:U 0 2 C13R:A 0 3 C14R:A 0 4 C15R:U 0 5 C16R:C 0 [Edges] 0 {C8R:G -> C9R:U: adjacent_5p upward } 0 1 {C9R:U -> C8R:G: adjacent_3p downward } 0 2 {C8R:G -> C16R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C16R:C -> C8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C9R:U -> C13R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {C13R:A -> C9R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {C13R:A -> C14R:A: adjacent_5p } 0 7 {C14R:A -> C13R:A: adjacent_3p } 0 8 {C13R:A -> C16R:C: upward } 0 9 {C16R:C -> C13R:A: downward } 0 10 {C14R:A -> C15R:U: adjacent_5p upward } 0 11 {C15R:U -> C14R:A: adjacent_3p downward } 0 12 {C15R:U -> C16R:C: adjacent_5p } 0 13 {C16R:C -> C15R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . [GraphModel] [Vertices] 0 D8R:G 0 1 D9R:U 0 2 D13R:A 0 3 D14R:A 0 4 D15R:U 0 5 D16R:C 0 [Edges] 0 {D8R:G -> D9R:U: adjacent_5p upward } 0 1 {D9R:U -> D8R:G: adjacent_3p downward } 0 2 {D8R:G -> D16R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D16R:C -> D8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D9R:U -> D13R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {D13R:A -> D9R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {D13R:A -> D14R:A: adjacent_5p } 0 7 {D14R:A -> D13R:A: adjacent_3p } 0 8 {D13R:A -> D16R:C: upward } 0 9 {D16R:C -> D13R:A: downward } 0 10 {D14R:A -> D15R:U: adjacent_5p upward } 0 11 {D15R:U -> D14R:A: adjacent_3p downward } 0 12 {D15R:U -> D16R:C: adjacent_5p } 0 13 {D16R:C -> D15R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . MOLECULE: [GraphModel] [Vertices] 0 B953R:G 0 1 B954R:U 0 2 B958R:A 0 3 B959R:A 0 4 B960R:U 0 5 B961R:C 0 [Edges] 0 {B953R:G -> B954R:U: adjacent_5p upward } 0 1 {B954R:U -> B953R:G: adjacent_3p downward } 0 2 {B953R:G -> B961R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B961R:C -> B953R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B954R:U -> B958R:A: pairing antiparallel trans one_hbond Ws/Hw } 0 5 {B958R:A -> B954R:U: pairing antiparallel trans one_hbond Hw/Ws } 0 6 {B958R:A -> B959R:A: adjacent_5p } 0 7 {B959R:A -> B958R:A: adjacent_3p } 0 8 {B958R:A -> B961R:C: upward } 0 9 {B961R:C -> B958R:A: downward } 0 10 {B959R:A -> B960R:U: adjacent_5p upward } 0 11 {B960R:U -> B959R:A: adjacent_3p downward } 0 12 {B960R:U -> B961R:C: adjacent_5p } 0 13 {B961R:C -> B960R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . MOLECULE: [GraphModel] [Vertices] 0 B408R:G 0 1 B409R:U 0 2 B413R:A 0 3 B414R:U 0 4 B415R:C 0 5 B416R:C 0 [Edges] 0 {B408R:G -> B409R:U: adjacent_5p upward } 0 1 {B409R:U -> B408R:G: adjacent_3p downward } 0 2 {B408R:G -> B416R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B416R:C -> B408R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B409R:U -> B413R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {B413R:A -> B409R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {B413R:A -> B414R:U: adjacent_5p } 0 7 {B414R:U -> B413R:A: adjacent_3p } 0 8 {B413R:A -> B416R:C: upward } 0 9 {B416R:C -> B413R:A: downward } 0 10 {B414R:U -> B415R:C: adjacent_5p upward } 0 11 {B415R:C -> B414R:U: adjacent_3p downward } 0 12 {B415R:C -> B416R:C: adjacent_5p } 0 13 {B416R:C -> B415R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . MOLECULE: [GraphModel] [Vertices] 0 B8R:G 0 1 B9R:U 0 2 B13R:A 0 3 B14R:A 0 4 B15R:U 0 5 B16R:C 0 [Edges] 0 {B8R:G -> B9R:U: adjacent_5p upward } 0 1 {B9R:U -> B8R:G: adjacent_3p downward } 0 2 {B8R:G -> B16R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B16R:C -> B8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B9R:U -> B13R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {B13R:A -> B9R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {B13R:A -> B14R:A: adjacent_5p } 0 7 {B14R:A -> B13R:A: adjacent_3p } 0 8 {B13R:A -> B16R:C: upward } 0 9 {B16R:C -> B13R:A: downward } 0 10 {B14R:A -> B15R:U: adjacent_5p upward } 0 11 {B15R:U -> B14R:A: adjacent_3p downward } 0 12 {B15R:U -> B16R:C: adjacent_5p } 0 13 {B16R:C -> B15R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . MOLECULE: [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:A 0 2 A36R:U 0 3 A37R:A 0 4 A38R:A 0 5 A39R:G 0 [Edges] 0 {A5R:U -> A6R:A: adjacent_5p } 0 1 {A6R:A -> A5R:U: adjacent_3p } 0 2 {A5R:U -> A37R:A: inward } 0 3 {A37R:A -> A5R:U: inward } 0 4 {A5R:U -> A39R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 5 {A39R:G -> A5R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 6 {A6R:A -> A36R:U: pairing antiparallel trans XXIV Hh/Ws } 0 7 {A36R:U -> A6R:A: pairing antiparallel trans XXIV Ws/Hh } 0 8 {A6R:A -> A37R:A: outward } 0 9 {A37R:A -> A6R:A: outward } 0 10 {A36R:U -> A37R:A: adjacent_5p upward } 0 11 {A37R:A -> A36R:U: adjacent_3p downward } 0 12 {A37R:A -> A38R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 13 {A38R:A -> A37R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 14 {A38R:A -> A39R:G: adjacent_5p upward } 0 15 {A39R:G -> A38R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 . 4 1 1 . 6 8 . . 2 . 7 . 10 . . 3 3 9 11 . 12 . 4 . . . 13 . 14 5 5 . . . 15 . [GraphModel] [Vertices] 0 B48R:U 0 1 B49R:A 0 2 B79R:U 0 3 B80R:A 0 4 B81R:A 0 5 B82R:G 0 [Edges] 0 {B48R:U -> B49R:A: adjacent_5p } 0 1 {B49R:A -> B48R:U: adjacent_3p } 0 2 {B48R:U -> B80R:A: inward } 0 3 {B80R:A -> B48R:U: inward } 0 4 {B48R:U -> B82R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 5 {B82R:G -> B48R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 6 {B49R:A -> B79R:U: pairing antiparallel trans XXIV Hh/Ws } 0 7 {B79R:U -> B49R:A: pairing antiparallel trans XXIV Ws/Hh } 0 8 {B49R:A -> B80R:A: outward } 0 9 {B80R:A -> B49R:A: outward } 0 10 {B79R:U -> B80R:A: adjacent_5p upward } 0 11 {B80R:A -> B79R:U: adjacent_3p downward } 0 12 {B80R:A -> B81R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 13 {B81R:A -> B80R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 14 {B81R:A -> B82R:G: adjacent_5p upward } 0 15 {B82R:G -> B81R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . 2 . 4 1 1 . 6 8 . . 2 . 7 . 10 . . 3 3 9 11 . 12 . 4 . . . 13 . 14 5 5 . . . 15 . MOLECULE: [GraphModel] [Vertices] 0 A15R:G 0 1 A16R:G 0 2 A29R:G 0 3 A30R:U 0 4 A31R:G 0 5 A32R:A 0 [Edges] 0 {A15R:G -> A16R:G: adjacent_5p } 0 1 {A16R:G -> A15R:G: adjacent_3p } 0 2 {A15R:G -> A32R:A: pairing antiparallel cis Ww/Ss } 0 3 {A32R:A -> A15R:G: pairing antiparallel cis Ss/Ww } 0 4 {A16R:G -> A29R:G: pairing parallel cis one_hbond Ww/Hw } 0 5 {A29R:G -> A16R:G: pairing parallel cis one_hbond Hw/Ww } 0 6 {A29R:G -> A30R:U: adjacent_5p } 0 7 {A30R:U -> A29R:G: adjacent_3p } 0 8 {A29R:G -> A31R:G: outward } 0 9 {A31R:G -> A29R:G: outward } 0 10 {A30R:U -> A31R:G: adjacent_5p } 0 11 {A31R:G -> A30R:U: adjacent_3p } 0 12 {A31R:G -> A32R:A: adjacent_5p upward } 0 13 {A32R:A -> A31R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 8 . 3 . . 7 . 10 . 4 . . 9 11 . 12 5 3 . . . 13 . MOLECULE: [GraphModel] [Vertices] 0 B53R:G 0 1 B54R:U 0 2 B58R:A 0 3 B59R:G 0 4 B60R:U 0 5 B61R:C 0 [Edges] 0 {B53R:G -> B54R:U: adjacent_5p upward } 0 1 {B54R:U -> B53R:G: adjacent_3p downward } 0 2 {B53R:G -> B61R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B61R:C -> B53R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B54R:U -> B58R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {B58R:A -> B54R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {B58R:A -> B59R:G: adjacent_5p } 0 7 {B59R:G -> B58R:A: adjacent_3p } 0 8 {B58R:A -> B61R:C: upward } 0 9 {B61R:C -> B58R:A: downward } 0 10 {B59R:G -> B60R:U: adjacent_5p upward } 0 11 {B60R:U -> B59R:G: adjacent_3p downward } 0 12 {B60R:U -> B61R:C: adjacent_5p } 0 13 {B61R:C -> B60R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . [GraphModel] [Vertices] 0 E53R:G 0 1 E54R:U 0 2 E58R:A 0 3 E59R:G 0 4 E60R:U 0 5 E61R:C 0 [Edges] 0 {E53R:G -> E54R:U: adjacent_5p upward } 0 1 {E54R:U -> E53R:G: adjacent_3p downward } 0 2 {E53R:G -> E61R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E61R:C -> E53R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E54R:U -> E58R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {E58R:A -> E54R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {E58R:A -> E59R:G: adjacent_5p } 0 7 {E59R:G -> E58R:A: adjacent_3p } 0 8 {E58R:A -> E61R:C: upward } 0 9 {E61R:C -> E58R:A: downward } 0 10 {E59R:G -> E60R:U: adjacent_5p } 0 11 {E60R:U -> E59R:G: adjacent_3p } 0 12 {E60R:U -> E61R:C: adjacent_5p } 0 13 {E61R:C -> E60R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . MOLECULE: [GraphModel] [Vertices] 0 C53R:G 0 1 C54R:U 0 2 C58R:A 0 3 C59R:G 0 4 C60R:U 0 5 C61R:C 0 [Edges] 0 {C53R:G -> C54R:U: adjacent_5p upward } 0 1 {C54R:U -> C53R:G: adjacent_3p downward } 0 2 {C53R:G -> C61R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C61R:C -> C53R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C54R:U -> C58R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {C58R:A -> C54R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {C58R:A -> C59R:G: adjacent_5p } 0 7 {C59R:G -> C58R:A: adjacent_3p } 0 8 {C58R:A -> C61R:C: upward } 0 9 {C61R:C -> C58R:A: downward } 0 10 {C59R:G -> C60R:U: adjacent_5p outward } 0 11 {C60R:U -> C59R:G: adjacent_3p outward } 0 12 {C60R:U -> C61R:C: adjacent_5p } 0 13 {C61R:C -> C60R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . [GraphModel] [Vertices] 0 D53R:G 0 1 D54R:U 0 2 D58R:A 0 3 D59R:G 0 4 D60R:U 0 5 D61R:C 0 [Edges] 0 {D53R:G -> D54R:U: adjacent_5p upward } 0 1 {D54R:U -> D53R:G: adjacent_3p downward } 0 2 {D53R:G -> D61R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D61R:C -> D53R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D54R:U -> D58R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {D58R:A -> D54R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {D58R:A -> D59R:G: adjacent_5p } 0 7 {D59R:G -> D58R:A: adjacent_3p } 0 8 {D58R:A -> D61R:C: upward } 0 9 {D61R:C -> D58R:A: downward } 0 10 {D59R:G -> D60R:U: adjacent_5p outward } 0 11 {D60R:U -> D59R:G: adjacent_3p outward } 0 12 {D60R:U -> D61R:C: adjacent_5p } 0 13 {D61R:C -> D60R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . MOLECULE: [GraphModel] [Vertices] 0 B5R:C 0 1 B6R:G 0 2 A9R:G 0 3 A10R:G 0 4 A11R:C 0 5 A12R:G 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p } 0 1 {A10R:G -> A9R:G: adjacent_3p } 0 2 {A9R:G -> B6R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 3 {B6R:G -> A9R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 4 {A10R:G -> A11R:C: adjacent_5p } 0 5 {A11R:C -> A10R:G: adjacent_3p } 0 6 {A10R:G -> A12R:G: pairing parallel cis one_hbond 113 Ws/Hw } 0 7 {A12R:G -> A10R:G: pairing parallel cis one_hbond 113 Hw/Ws } 0 8 {A11R:C -> A12R:G: adjacent_5p } 0 9 {A12R:G -> A11R:C: adjacent_3p } 0 10 {A11R:C -> B6R:G: pairing antiparallel cis Ww/Ww } 0 11 {B6R:G -> A11R:C: pairing antiparallel cis Ww/Ww } 0 12 {A12R:G -> B5R:C: pairing antiparallel cis XIX Ww/Ww } 0 13 {B5R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 14 {A12R:G -> B6R:G: outward } 0 15 {B6R:G -> A12R:G: outward } 0 16 {B5R:C -> B6R:G: adjacent_5p upward } 0 17 {B6R:G -> B5R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 16 . . . 13 1 17 . 3 . 11 15 2 . 2 . 0 . . 3 . . 1 . 4 6 4 . 10 . 5 . 8 5 12 14 . 7 9 . [GraphModel] [Vertices] 0 B6R:G 0 1 B7R:G 0 2 A8R:A 0 3 A9R:G 0 4 A10R:G 0 5 A11R:C 0 [Edges] 0 {A8R:A -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:A: adjacent_3p downward } 0 2 {A8R:A -> B7R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {B7R:G -> A8R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A9R:G -> A10R:G: adjacent_5p } 0 5 {A10R:G -> A9R:G: adjacent_3p } 0 6 {A9R:G -> B6R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 7 {B6R:G -> A9R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 8 {A10R:G -> A11R:C: adjacent_5p } 0 9 {A11R:C -> A10R:G: adjacent_3p } 0 10 {A11R:C -> B6R:G: pairing antiparallel cis Ww/Ww } 0 11 {B6R:G -> A11R:C: pairing antiparallel cis Ww/Ww } 0 12 {B6R:G -> B7R:G: adjacent_5p upward } 0 13 {B7R:G -> B6R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . 7 . 11 1 13 . 3 . . . 2 . 2 . 0 . . 3 6 . 1 . 4 . 4 . . . 5 . 8 5 10 . . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:G 0 2 B31R:A 0 3 B32R:G 0 4 B33R:G 0 5 B34R:C 0 [Edges] 0 {A6R:G -> A7R:G: adjacent_5p upward } 0 1 {A7R:G -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> B34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B34R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:G -> B31R:A: pairing antiparallel cis VIII Ww/Ww } 0 5 {B31R:A -> A7R:G: pairing antiparallel cis VIII Ww/Ww } 0 6 {B31R:A -> B32R:G: adjacent_5p upward } 0 7 {B32R:G -> B31R:A: adjacent_3p downward } 0 8 {B32R:G -> B33R:G: adjacent_5p } 0 9 {B33R:G -> B32R:G: adjacent_3p } 0 10 {B33R:G -> B34R:C: adjacent_5p } 0 11 {B34R:C -> B33R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . . 3 . . 7 . 8 . 4 . . . 9 . 10 5 3 . . . 11 . [GraphModel] [Vertices] 0 B6R:G 0 1 B7R:G 0 2 A31R:A 0 3 A32R:G 0 4 A33R:G 0 5 A34R:C 0 [Edges] 0 {A31R:A -> A32R:G: adjacent_5p upward } 0 1 {A32R:G -> A31R:A: adjacent_3p downward } 0 2 {A31R:A -> B7R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {B7R:G -> A31R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A32R:G -> A33R:G: adjacent_5p } 0 5 {A33R:G -> A32R:G: adjacent_3p } 0 6 {A33R:G -> A34R:C: adjacent_5p } 0 7 {A34R:C -> A33R:G: adjacent_3p } 0 8 {A34R:C -> B6R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B6R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B6R:G -> B7R:G: adjacent_5p upward } 0 11 {B7R:G -> B6R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 10 . . . 9 1 11 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 R53R:G 0 1 R54R:U 0 2 R58R:A 0 3 R59R:G 0 4 R60R:C 0 5 R61R:C 0 [Edges] 0 {R53R:G -> R54R:U: adjacent_5p upward } 0 1 {R54R:U -> R53R:G: adjacent_3p downward } 0 2 {R53R:G -> R61R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {R61R:C -> R53R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {R54R:U -> R58R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {R58R:A -> R54R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {R58R:A -> R59R:G: adjacent_5p } 0 7 {R59R:G -> R58R:A: adjacent_3p } 0 8 {R58R:A -> R61R:C: upward } 0 9 {R61R:C -> R58R:A: downward } 0 10 {R59R:G -> R60R:C: adjacent_5p upward } 0 11 {R60R:C -> R59R:G: adjacent_3p downward } 0 12 {R60R:C -> R61R:C: adjacent_5p } 0 13 {R61R:C -> R60R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . . 2 1 1 . 4 . . . 2 . 5 . 6 . 8 3 . . 7 . 10 . 4 . . . 11 . 12 5 3 . 9 . 13 . MOLECULE: [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:G 0 2 B64R:A 0 3 B65R:G 0 4 B66R:G 0 5 B67R:C 0 [Edges] 0 {A4R:G -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B66R:G: pairing antiparallel cis one_hbond 115 Wh/Ws } 0 3 {B66R:G -> A4R:G: pairing antiparallel cis one_hbond 115 Ws/Wh } 0 4 {A4R:G -> B67R:C: pairing antiparallel cis Ww/Ww } 0 5 {B67R:C -> A4R:G: pairing antiparallel cis Ww/Ww } 0 6 {A5R:G -> B64R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {B64R:A -> A5R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {B64R:A -> B65R:G: adjacent_5p } 0 9 {B65R:G -> B64R:A: adjacent_3p } 0 10 {B65R:G -> B66R:G: adjacent_5p } 0 11 {B66R:G -> B65R:G: adjacent_3p } 0 12 {B66R:G -> B67R:C: adjacent_5p } 0 13 {B67R:C -> B66R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 0 . . 2 4 1 1 . 6 . . . 2 . 7 . 8 . . 3 . . 9 . 10 . 4 3 . . 11 . 12 5 5 . . . 13 . [GraphModel] [Vertices] 0 B39R:G 0 1 B40R:G 0 2 A29R:A 0 3 A30R:G 0 4 A31R:G 0 5 A32R:C 0 [Edges] 0 {A29R:A -> A30R:G: adjacent_5p } 0 1 {A30R:G -> A29R:A: adjacent_3p } 0 2 {A29R:A -> B40R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {B40R:G -> A29R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A30R:G -> A31R:G: adjacent_5p } 0 5 {A31R:G -> A30R:G: adjacent_3p } 0 6 {A31R:G -> A32R:C: adjacent_5p } 0 7 {A32R:C -> A31R:G: adjacent_3p } 0 8 {A31R:G -> B39R:G: pairing antiparallel cis one_hbond 115 Ws/Wh } 0 9 {B39R:G -> A31R:G: pairing antiparallel cis one_hbond 115 Wh/Ws } 0 10 {A32R:C -> B39R:G: pairing antiparallel cis Ww/Ww } 0 11 {B39R:G -> A32R:C: pairing antiparallel cis Ww/Ww } 0 12 {B39R:G -> B40R:G: adjacent_5p upward } 0 13 {B40R:G -> B39R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . 9 11 1 13 . 3 . . . 2 . 2 . 0 . . 3 . . 1 . 4 . 4 8 . . 5 . 6 5 10 . . . 7 . MOLECULE: [GraphModel] [Vertices] 0 B20R:C 0 1 B21R:G 0 2 B7R:U 0 3 B8R:U 0 4 B9R:G 0 5 B10R:G 0 [Edges] 0 {B7R:U -> B8R:U: adjacent_5p } 0 1 {B8R:U -> B7R:U: adjacent_3p } 0 2 {B7R:U -> B21R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {B21R:G -> B7R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {B8R:U -> B9R:G: adjacent_5p } 0 5 {B9R:G -> B8R:U: adjacent_3p } 0 6 {B9R:G -> B10R:G: adjacent_5p } 0 7 {B10R:G -> B9R:G: adjacent_3p } 0 8 {B10R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B20R:C -> B10R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B10R:G -> B21R:G: outward } 0 11 {B21R:G -> B10R:G: outward } 0 12 {B20R:C -> B21R:G: adjacent_5p upward } 0 13 {B21R:G -> B20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 5 0 . 12 . . . 9 1 13 . 3 . . 11 2 . 2 . 0 . . 3 . . 1 . 4 . 4 . . . 5 . 6 5 8 10 . . 7 .