MOLECULE: [GraphModel] [Vertices] 0 5R:G 0 1 6R:C 0 2 11R:C 0 3 12R:U 0 4 13R:C 0 [Edges] 0 {5R:G -> 6R:C: adjacent_5p } 0 1 {6R:C -> 5R:G: adjacent_3p } 0 2 {5R:G -> 13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {13R:C -> 5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {6R:C -> 11R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 5 {11R:C -> 6R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 6 {11R:C -> 12R:U: adjacent_5p upward } 0 7 {12R:U -> 11R:C: adjacent_3p downward } 0 8 {12R:U -> 13R:C: adjacent_5p } 0 9 {13R:C -> 12R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 16R:U 0 1 17R:G 0 2 10R:A 0 3 11R:G 0 4 12R:A 0 [Edges] 0 {10R:A -> 11R:G: adjacent_5p } 0 1 {11R:G -> 10R:A: adjacent_3p } 0 2 {10R:A -> 17R:G: pairing parallel trans one_hbond Bs/Ss } 0 3 {17R:G -> 10R:A: pairing parallel trans one_hbond Ss/Bs } 0 4 {11R:G -> 12R:A: adjacent_5p } 0 5 {12R:A -> 11R:G: adjacent_3p } 0 6 {12R:A -> 16R:U: pairing parallel trans one_hbond Bs/Wh } 0 7 {16R:U -> 12R:A: pairing parallel trans one_hbond Wh/Bs } 0 8 {16R:U -> 17R:G: adjacent_5p upward } 0 9 {17R:G -> 16R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A9R:A 0 1 A10R:A 0 2 A27R:A 0 3 A28R:U 0 4 A29R:A 0 [Edges] 0 {A9R:A -> A10R:A: adjacent_5p } 0 1 {A10R:A -> A9R:A: adjacent_3p } 0 2 {A9R:A -> A29R:A: pairing parallel trans one_hbond Hw/Hh } 0 3 {A29R:A -> A9R:A: pairing parallel trans one_hbond Hh/Hw } 0 4 {A10R:A -> A27R:A: pairing antiparallel trans one_hbond 40 Bh/Ss } 0 5 {A27R:A -> A10R:A: pairing antiparallel trans one_hbond 40 Ss/Bh } 0 6 {A27R:A -> A28R:U: adjacent_5p upward } 0 7 {A28R:U -> A27R:A: adjacent_3p downward } 0 8 {A28R:U -> A29R:A: adjacent_5p } 0 9 {A29R:A -> A28R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 8R:U 0 1 9R:G 0 2 16R:U 0 3 17R:A 0 4 18R:A 0 [Edges] 0 {8R:U -> 9R:G: adjacent_5p upward } 0 1 {9R:G -> 8R:U: adjacent_3p downward } 0 2 {8R:U -> 18R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {18R:A -> 8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {9R:G -> 16R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 5 {16R:U -> 9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 6 {16R:U -> 17R:A: adjacent_5p upward } 0 7 {17R:A -> 16R:U: adjacent_3p downward } 0 8 {17R:A -> 18R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 9 {18R:A -> 17R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 8R:C 0 1 9R:G 0 2 11R:A 0 3 12R:G 0 4 13R:G 0 [Edges] 0 {8R:C -> 9R:G: adjacent_5p } 0 1 {9R:G -> 8R:C: adjacent_3p } 0 2 {8R:C -> 13R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {13R:G -> 8R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {9R:G -> 11R:A: pairing parallel cis one_hbond Wh/Hw } 0 5 {11R:A -> 9R:G: pairing parallel cis one_hbond Hw/Wh } 0 6 {11R:A -> 12R:G: adjacent_5p } 0 7 {12R:G -> 11R:A: adjacent_3p } 0 8 {12R:G -> 13R:G: adjacent_5p } 0 9 {13R:G -> 12R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A18R:C 0 1 A19R:U 0 2 A5R:A 0 3 A6R:C 0 4 A7R:G 0 [Edges] 0 {A5R:A -> A6R:C: adjacent_5p } 0 1 {A6R:C -> A5R:A: adjacent_3p } 0 2 {A5R:A -> A7R:G: upward } 0 3 {A7R:G -> A5R:A: downward } 0 4 {A5R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {A19R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {A6R:C -> A7R:G: adjacent_5p } 0 7 {A7R:G -> A6R:C: adjacent_3p } 0 8 {A7R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A18R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A18R:C -> A19R:U: adjacent_5p } 0 11 {A19R:U -> A18R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 A14R:U 0 1 A15R:C 0 2 A31R:C 0 3 A32R:A 0 4 A33R:G 0 [Edges] 0 {A14R:U -> A15R:C: adjacent_5p upward } 0 1 {A15R:C -> A14R:U: adjacent_3p downward } 0 2 {A14R:U -> A33R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A33R:G -> A14R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A15R:C -> A31R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 5 {A31R:C -> A15R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 6 {A15R:C -> A32R:A: pairing antiparallel trans one_hbond 77 Ss/Hw } 0 7 {A32R:A -> A15R:C: pairing antiparallel trans one_hbond 77 Hw/Ss } 0 8 {A31R:C -> A32R:A: adjacent_5p } 0 9 {A32R:A -> A31R:C: adjacent_3p } 0 10 {A32R:A -> A33R:G: adjacent_5p upward } 0 11 {A33R:G -> A32R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 . 2 . 5 . 8 . 3 . 7 9 . 10 4 3 . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A47R:G 0 1 A48R:G 0 2 B71R:G 0 3 B72R:U 0 4 B73R:A 0 [Edges] 0 {A47R:G -> A48R:G: adjacent_5p upward } 0 1 {A48R:G -> A47R:G: adjacent_3p downward } 0 2 {A47R:G -> B73R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {B73R:A -> A47R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A48R:G -> B71R:G: pairing parallel cis VI Ww/Hh } 0 5 {B71R:G -> A48R:G: pairing parallel cis VI Hh/Ww } 0 6 {B71R:G -> B72R:U: adjacent_5p } 0 7 {B72R:U -> B71R:G: adjacent_3p } 0 8 {B71R:G -> B73R:A: outward } 0 9 {B73R:A -> B71R:G: outward } 0 10 {B72R:U -> B73R:A: adjacent_5p } 0 11 {B73R:A -> B72R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A50R:G 0 1 A51R:C 0 2 B67R:G 0 3 B68R:A 0 4 B69R:C 0 [Edges] 0 {A50R:G -> A51R:C: adjacent_5p upward } 0 1 {A51R:C -> A50R:G: adjacent_3p downward } 0 2 {A50R:G -> B69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B69R:C -> A50R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A51R:C -> B67R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {B67R:G -> A51R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {B67R:G -> B68R:A: adjacent_5p } 0 7 {B68R:A -> B67R:G: adjacent_3p } 0 8 {B67R:G -> B69R:C: upward } 0 9 {B69R:C -> B67R:G: downward } 0 10 {B68R:A -> B69R:C: adjacent_5p } 0 11 {B69R:C -> B68R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . MOLECULE: [GraphModel] [Vertices] 0 A15R:G 0 1 A16R:G 0 2 A6R:C 0 3 A7R:A 0 4 A8R:C 0 [Edges] 0 {A6R:C -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:C: adjacent_3p downward } 0 2 {A6R:C -> A16R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A16R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:A -> A8R:C: adjacent_5p upward } 0 5 {A8R:C -> A7R:A: adjacent_3p downward } 0 6 {A8R:C -> A15R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A15R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A15R:G -> A16R:G: adjacent_5p upward } 0 9 {A16R:G -> A15R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A14R:A 0 1 A15R:U 0 2 A29R:C 0 3 A30R:G 0 4 A31R:A 0 [Edges] 0 {A14R:A -> A15R:U: adjacent_5p } 0 1 {A15R:U -> A14R:A: adjacent_3p } 0 2 {A14R:A -> A31R:A: pairing parallel trans I Ww/Ww } 0 3 {A31R:A -> A14R:A: pairing parallel trans I Ww/Ww } 0 4 {A15R:U -> A29R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 5 {A29R:C -> A15R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 6 {A29R:C -> A30R:G: adjacent_5p inward } 0 7 {A30R:G -> A29R:C: adjacent_3p inward } 0 8 {A30R:G -> A31R:A: adjacent_5p } 0 9 {A31R:A -> A30R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 A18R:C 0 1 A19R:C 0 2 A26R:G 0 3 A27R:U 0 4 A28R:G 0 [Edges] 0 {A18R:C -> A19R:C: adjacent_5p upward } 0 1 {A19R:C -> A18R:C: adjacent_3p downward } 0 2 {A18R:C -> A28R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A28R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A19R:C -> A26R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A26R:G -> A19R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A26R:G -> A27R:U: adjacent_5p } 0 7 {A27R:U -> A26R:G: adjacent_3p } 0 8 {A27R:U -> A28R:G: adjacent_5p } 0 9 {A28R:G -> A27R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 C214R:A 0 1 C215R:U 0 2 C229R:C 0 3 C230R:G 0 4 C231R:A 0 [Edges] 0 {C214R:A -> C215R:U: adjacent_5p } 0 1 {C215R:U -> C214R:A: adjacent_3p } 0 2 {C214R:A -> C231R:A: pairing parallel trans I Ww/Ww } 0 3 {C231R:A -> C214R:A: pairing parallel trans I Ww/Ww } 0 4 {C215R:U -> C229R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 5 {C229R:C -> C215R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 6 {C229R:C -> C230R:G: adjacent_5p inward } 0 7 {C230R:G -> C229R:C: adjacent_3p inward } 0 8 {C230R:G -> C231R:A: adjacent_5p } 0 9 {C231R:A -> C230R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 C218R:C 0 1 C219R:C 0 2 C226R:G 0 3 C227R:U 0 4 C228R:G 0 [Edges] 0 {C218R:C -> C219R:C: adjacent_5p upward } 0 1 {C219R:C -> C218R:C: adjacent_3p downward } 0 2 {C218R:C -> C228R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C228R:G -> C218R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C219R:C -> C226R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {C226R:G -> C219R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {C226R:G -> C227R:U: adjacent_5p } 0 7 {C227R:U -> C226R:G: adjacent_3p } 0 8 {C227R:U -> C228R:G: adjacent_5p } 0 9 {C228R:G -> C227R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 E409R:U 0 1 E410R:G 0 2 E418R:C 0 3 E419R:C 0 4 E420R:A 0 [Edges] 0 {E409R:U -> E410R:G: adjacent_5p } 0 1 {E410R:G -> E409R:U: adjacent_3p } 0 2 {E409R:U -> E420R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {E420R:A -> E409R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {E410R:G -> E418R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 5 {E418R:C -> E410R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 6 {E418R:C -> E419R:C: adjacent_5p upward } 0 7 {E419R:C -> E418R:C: adjacent_3p downward } 0 8 {E419R:C -> E420R:A: adjacent_5p upward } 0 9 {E420R:A -> E419R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 E414R:A 0 1 E415R:U 0 2 E429R:C 0 3 E430R:G 0 4 E431R:A 0 [Edges] 0 {E414R:A -> E415R:U: adjacent_5p } 0 1 {E415R:U -> E414R:A: adjacent_3p } 0 2 {E414R:A -> E431R:A: pairing parallel trans I Ww/Ww } 0 3 {E431R:A -> E414R:A: pairing parallel trans I Ww/Ww } 0 4 {E415R:U -> E429R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 5 {E429R:C -> E415R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 6 {E429R:C -> E430R:G: adjacent_5p inward } 0 7 {E430R:G -> E429R:C: adjacent_3p inward } 0 8 {E430R:G -> E431R:A: adjacent_5p } 0 9 {E431R:A -> E430R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 E418R:C 0 1 E419R:C 0 2 E426R:G 0 3 E427R:U 0 4 E428R:G 0 [Edges] 0 {E418R:C -> E419R:C: adjacent_5p upward } 0 1 {E419R:C -> E418R:C: adjacent_3p downward } 0 2 {E418R:C -> E428R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E428R:G -> E418R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E419R:C -> E426R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {E426R:G -> E419R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {E426R:G -> E427R:U: adjacent_5p } 0 7 {E427R:U -> E426R:G: adjacent_3p } 0 8 {E427R:U -> E428R:G: adjacent_5p } 0 9 {E428R:G -> E427R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 G609R:U 0 1 G610R:G 0 2 G618R:C 0 3 G619R:C 0 4 G620R:A 0 [Edges] 0 {G609R:U -> G610R:G: adjacent_5p } 0 1 {G610R:G -> G609R:U: adjacent_3p } 0 2 {G609R:U -> G620R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {G620R:A -> G609R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {G610R:G -> G618R:C: pairing antiparallel cis one_hbond 123 Wh/Bh } 0 5 {G618R:C -> G610R:G: pairing antiparallel cis one_hbond 123 Bh/Wh } 0 6 {G618R:C -> G619R:C: adjacent_5p upward } 0 7 {G619R:C -> G618R:C: adjacent_3p downward } 0 8 {G619R:C -> G620R:A: adjacent_5p upward } 0 9 {G620R:A -> G619R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 G614R:A 0 1 G615R:U 0 2 G629R:C 0 3 G630R:G 0 4 G631R:A 0 [Edges] 0 {G614R:A -> G615R:U: adjacent_5p } 0 1 {G615R:U -> G614R:A: adjacent_3p } 0 2 {G614R:A -> G631R:A: pairing parallel trans one_hbond Ww/Ww } 0 3 {G631R:A -> G614R:A: pairing parallel trans one_hbond Ww/Ww } 0 4 {G615R:U -> G629R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 5 {G629R:C -> G615R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 6 {G629R:C -> G630R:G: adjacent_5p inward } 0 7 {G630R:G -> G629R:C: adjacent_3p inward } 0 8 {G630R:G -> G631R:A: adjacent_5p } 0 9 {G631R:A -> G630R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 G618R:C 0 1 G619R:C 0 2 G626R:G 0 3 G627R:U 0 4 G628R:G 0 [Edges] 0 {G618R:C -> G619R:C: adjacent_5p upward } 0 1 {G619R:C -> G618R:C: adjacent_3p downward } 0 2 {G618R:C -> G628R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {G628R:G -> G618R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {G619R:C -> G626R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {G626R:G -> G619R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {G626R:G -> G627R:U: adjacent_5p } 0 7 {G627R:U -> G626R:G: adjacent_3p } 0 8 {G627R:U -> G628R:G: adjacent_5p } 0 9 {G628R:G -> G627R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:A 0 2 B15R:U 0 3 B16R:C 0 4 B17R:G 0 [Edges] 0 {A3R:C -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B17R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> B15R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {B15R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {A4R:A -> B17R:G: outward } 0 7 {B17R:G -> A4R:A: outward } 0 8 {B15R:U -> B16R:C: adjacent_5p } 0 9 {B16R:C -> B15R:U: adjacent_3p } 0 10 {B16R:C -> B17R:G: adjacent_5p } 0 11 {B17R:G -> B16R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . 6 2 . 5 . 8 . 3 . . 9 . 10 4 3 7 . 11 . MOLECULE: [GraphModel] [Vertices] 0 A105R:G 0 1 A106R:G 0 2 B124R:G 0 3 B125R:U 0 4 B126R:A 0 [Edges] 0 {A105R:G -> A106R:G: adjacent_5p upward } 0 1 {A106R:G -> A105R:G: adjacent_3p downward } 0 2 {A105R:G -> B126R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {B126R:A -> A105R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A106R:G -> B124R:G: pairing parallel cis VI Ww/Hh } 0 5 {B124R:G -> A106R:G: pairing parallel cis VI Hh/Ww } 0 6 {B124R:G -> B125R:U: adjacent_5p } 0 7 {B125R:U -> B124R:G: adjacent_3p } 0 8 {B124R:G -> B126R:A: outward } 0 9 {B126R:A -> B124R:G: outward } 0 10 {B125R:U -> B126R:A: adjacent_5p } 0 11 {B126R:A -> B125R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A108R:G 0 1 A109R:C 0 2 B120R:G 0 3 B121R:A 0 4 B122R:C 0 [Edges] 0 {A108R:G -> A109R:C: adjacent_5p upward } 0 1 {A109R:C -> A108R:G: adjacent_3p downward } 0 2 {A108R:G -> B122R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B122R:C -> A108R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A109R:C -> B120R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {B120R:G -> A109R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {B120R:G -> B121R:A: adjacent_5p } 0 7 {B121R:A -> B120R:G: adjacent_3p } 0 8 {B120R:G -> B122R:C: upward } 0 9 {B122R:C -> B120R:G: downward } 0 10 {B121R:A -> B122R:C: adjacent_5p } 0 11 {B122R:C -> B121R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 C205R:G 0 1 C206R:G 0 2 D224R:G 0 3 D225R:U 0 4 D226R:A 0 [Edges] 0 {C205R:G -> C206R:G: adjacent_5p upward } 0 1 {C206R:G -> C205R:G: adjacent_3p downward } 0 2 {C205R:G -> D226R:A: pairing antiparallel cis one_hbond Wh/Bs } 0 3 {D226R:A -> C205R:G: pairing antiparallel cis one_hbond Bs/Wh } 0 4 {C206R:G -> D224R:G: pairing parallel cis VI Ww/Hh } 0 5 {D224R:G -> C206R:G: pairing parallel cis VI Hh/Ww } 0 6 {D224R:G -> D225R:U: adjacent_5p } 0 7 {D225R:U -> D224R:G: adjacent_3p } 0 8 {D224R:G -> D226R:A: outward } 0 9 {D226R:A -> D224R:G: outward } 0 10 {D225R:U -> D226R:A: adjacent_5p } 0 11 {D226R:A -> D225R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 C208R:G 0 1 C209R:C 0 2 D220R:G 0 3 D221R:A 0 4 D222R:C 0 [Edges] 0 {C208R:G -> C209R:C: adjacent_5p upward } 0 1 {C209R:C -> C208R:G: adjacent_3p downward } 0 2 {C208R:G -> D222R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D222R:C -> C208R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C209R:C -> D220R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {D220R:G -> C209R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {D220R:G -> D221R:A: adjacent_5p } 0 7 {D221R:A -> D220R:G: adjacent_3p } 0 8 {D220R:G -> D222R:C: upward } 0 9 {D222R:C -> D220R:G: downward } 0 10 {D221R:A -> D222R:C: adjacent_5p } 0 11 {D222R:C -> D221R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 E305R:G 0 1 E306R:G 0 2 F324R:G 0 3 F325R:U 0 4 F326R:A 0 [Edges] 0 {E305R:G -> E306R:G: adjacent_5p upward } 0 1 {E306R:G -> E305R:G: adjacent_3p downward } 0 2 {E305R:G -> F326R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {F326R:A -> E305R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {E306R:G -> F324R:G: pairing parallel cis VI Ww/Hh } 0 5 {F324R:G -> E306R:G: pairing parallel cis VI Hh/Ww } 0 6 {F324R:G -> F325R:U: adjacent_5p } 0 7 {F325R:U -> F324R:G: adjacent_3p } 0 8 {F324R:G -> F326R:A: outward } 0 9 {F326R:A -> F324R:G: outward } 0 10 {F325R:U -> F326R:A: adjacent_5p } 0 11 {F326R:A -> F325R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 E308R:G 0 1 E309R:C 0 2 F320R:G 0 3 F321R:A 0 4 F322R:C 0 [Edges] 0 {E308R:G -> E309R:C: adjacent_5p upward } 0 1 {E309R:C -> E308R:G: adjacent_3p downward } 0 2 {E308R:G -> F322R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {F322R:C -> E308R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E309R:C -> F320R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {F320R:G -> E309R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {F320R:G -> F321R:A: adjacent_5p } 0 7 {F321R:A -> F320R:G: adjacent_3p } 0 8 {F320R:G -> F322R:C: upward } 0 9 {F322R:C -> F320R:G: downward } 0 10 {F321R:A -> F322R:C: adjacent_5p } 0 11 {F322R:C -> F321R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 G405R:G 0 1 G406R:G 0 2 H424R:G 0 3 H425R:U 0 4 H426R:A 0 [Edges] 0 {G405R:G -> G406R:G: adjacent_5p upward } 0 1 {G406R:G -> G405R:G: adjacent_3p downward } 0 2 {G405R:G -> H426R:A: pairing antiparallel cis one_hbond Wh/Bs } 0 3 {H426R:A -> G405R:G: pairing antiparallel cis one_hbond Bs/Wh } 0 4 {G406R:G -> H424R:G: pairing parallel cis VI Ww/Hh } 0 5 {H424R:G -> G406R:G: pairing parallel cis VI Hh/Ww } 0 6 {H424R:G -> H425R:U: adjacent_5p } 0 7 {H425R:U -> H424R:G: adjacent_3p } 0 8 {H424R:G -> H426R:A: outward } 0 9 {H426R:A -> H424R:G: outward } 0 10 {H425R:U -> H426R:A: adjacent_5p } 0 11 {H426R:A -> H425R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 G408R:G 0 1 G409R:C 0 2 H420R:G 0 3 H421R:A 0 4 H422R:C 0 [Edges] 0 {G408R:G -> G409R:C: adjacent_5p upward } 0 1 {G409R:C -> G408R:G: adjacent_3p downward } 0 2 {G408R:G -> H422R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {H422R:C -> G408R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {G409R:C -> H420R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {H420R:G -> G409R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {H420R:G -> H421R:A: adjacent_5p } 0 7 {H421R:A -> H420R:G: adjacent_3p } 0 8 {H420R:G -> H422R:C: upward } 0 9 {H422R:C -> H420R:G: downward } 0 10 {H421R:A -> H422R:C: adjacent_5p } 0 11 {H422R:C -> H421R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . MOLECULE: [GraphModel] [Vertices] 0 5R:G 0 1 6R:G 0 2 24R:G 0 3 25R:U 0 4 26R:A 0 [Edges] 0 {5R:G -> 6R:G: adjacent_5p } 0 1 {6R:G -> 5R:G: adjacent_3p } 0 2 {5R:G -> 26R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {26R:A -> 5R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {6R:G -> 24R:G: pairing parallel trans III Ww/Ww } 0 5 {24R:G -> 6R:G: pairing parallel trans III Ww/Ww } 0 6 {24R:G -> 25R:U: adjacent_5p } 0 7 {25R:U -> 24R:G: adjacent_3p } 0 8 {24R:G -> 26R:A: outward } 0 9 {26R:A -> 24R:G: outward } 0 10 {25R:U -> 26R:A: adjacent_5p } 0 11 {26R:A -> 25R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 8R:G 0 1 9R:C 0 2 20R:G 0 3 21R:A 0 4 22R:C 0 [Edges] 0 {8R:G -> 9R:C: adjacent_5p upward } 0 1 {9R:C -> 8R:G: adjacent_3p downward } 0 2 {8R:G -> 22R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {22R:C -> 8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {9R:C -> 20R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {20R:G -> 9R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {20R:G -> 21R:A: adjacent_5p } 0 7 {21R:A -> 20R:G: adjacent_3p } 0 8 {21R:A -> 22R:C: adjacent_5p } 0 9 {22R:C -> 21R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:G 0 2 B9R:A 0 3 B10R:C 0 4 B11R:U 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p upward } 0 1 {A10R:G -> A9R:G: adjacent_3p downward } 0 2 {A9R:G -> B11R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {B11R:U -> A9R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A10R:G -> B9R:A: pairing antiparallel cis one_hbond 67 Wh/Hw } 0 5 {B9R:A -> A10R:G: pairing antiparallel cis one_hbond 67 Hw/Wh } 0 6 {A10R:G -> B10R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B10R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B9R:A -> B10R:C: adjacent_5p upward } 0 9 {B10R:C -> B9R:A: adjacent_3p downward } 0 10 {B10R:C -> B11R:U: adjacent_5p upward } 0 11 {B11R:U -> B10R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 . 2 . 5 . 8 . 3 . 7 9 . 10 4 3 . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A214R:A 0 1 A215R:U 0 2 A229R:C 0 3 A230R:G 0 4 A231R:A 0 [Edges] 0 {A214R:A -> A215R:U: adjacent_5p } 0 1 {A215R:U -> A214R:A: adjacent_3p } 0 2 {A214R:A -> A231R:A: pairing parallel trans I Ww/Ww } 0 3 {A231R:A -> A214R:A: pairing parallel trans I Ww/Ww } 0 4 {A215R:U -> A229R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 5 {A229R:C -> A215R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 6 {A229R:C -> A230R:G: adjacent_5p inward } 0 7 {A230R:G -> A229R:C: adjacent_3p inward } 0 8 {A230R:G -> A231R:A: adjacent_5p } 0 9 {A231R:A -> A230R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 A218R:C 0 1 A219R:C 0 2 A226R:G 0 3 A227R:U 0 4 A228R:G 0 [Edges] 0 {A218R:C -> A219R:C: adjacent_5p upward } 0 1 {A219R:C -> A218R:C: adjacent_3p downward } 0 2 {A218R:C -> A228R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A228R:G -> A218R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A219R:C -> A226R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A226R:G -> A219R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A226R:G -> A227R:U: adjacent_5p } 0 7 {A227R:U -> A226R:G: adjacent_3p } 0 8 {A227R:U -> A228R:G: adjacent_5p } 0 9 {A228R:G -> A227R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 B314R:A 0 1 B315R:U 0 2 B329R:C 0 3 B330R:G 0 4 B331R:A 0 [Edges] 0 {B314R:A -> B315R:U: adjacent_5p } 0 1 {B315R:U -> B314R:A: adjacent_3p } 0 2 {B314R:A -> B331R:A: pairing parallel trans I Ww/Ww } 0 3 {B331R:A -> B314R:A: pairing parallel trans I Ww/Ww } 0 4 {B315R:U -> B329R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 5 {B329R:C -> B315R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 6 {B329R:C -> B330R:G: adjacent_5p inward } 0 7 {B330R:G -> B329R:C: adjacent_3p inward } 0 8 {B330R:G -> B331R:A: adjacent_5p } 0 9 {B331R:A -> B330R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 B318R:C 0 1 B319R:C 0 2 B326R:G 0 3 B327R:U 0 4 B328R:G 0 [Edges] 0 {B318R:C -> B319R:C: adjacent_5p upward } 0 1 {B319R:C -> B318R:C: adjacent_3p downward } 0 2 {B318R:C -> B328R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B328R:G -> B318R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B319R:C -> B326R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {B326R:G -> B319R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {B326R:G -> B327R:U: adjacent_5p } 0 7 {B327R:U -> B326R:G: adjacent_3p } 0 8 {B327R:U -> B328R:G: adjacent_5p } 0 9 {B328R:G -> B327R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 C414R:A 0 1 C415R:U 0 2 C429R:C 0 3 C430R:G 0 4 C431R:A 0 [Edges] 0 {C414R:A -> C415R:U: adjacent_5p } 0 1 {C415R:U -> C414R:A: adjacent_3p } 0 2 {C414R:A -> C431R:A: pairing parallel trans I Ww/Ww } 0 3 {C431R:A -> C414R:A: pairing parallel trans I Ww/Ww } 0 4 {C415R:U -> C429R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 5 {C429R:C -> C415R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 6 {C429R:C -> C430R:G: adjacent_5p inward } 0 7 {C430R:G -> C429R:C: adjacent_3p inward } 0 8 {C430R:G -> C431R:A: adjacent_5p } 0 9 {C431R:A -> C430R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 C418R:C 0 1 C419R:C 0 2 C426R:G 0 3 C427R:U 0 4 C428R:G 0 [Edges] 0 {C418R:C -> C419R:C: adjacent_5p upward } 0 1 {C419R:C -> C418R:C: adjacent_3p downward } 0 2 {C418R:C -> C428R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {C428R:G -> C418R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {C419R:C -> C426R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {C426R:G -> C419R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {C426R:G -> C427R:U: adjacent_5p } 0 7 {C427R:U -> C426R:G: adjacent_3p } 0 8 {C427R:U -> C428R:G: adjacent_5p } 0 9 {C428R:G -> C427R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 D514R:A 0 1 D515R:U 0 2 D529R:C 0 3 D530R:G 0 4 D531R:A 0 [Edges] 0 {D514R:A -> D515R:U: adjacent_5p } 0 1 {D515R:U -> D514R:A: adjacent_3p } 0 2 {D514R:A -> D531R:A: pairing parallel trans I Ww/Ww } 0 3 {D531R:A -> D514R:A: pairing parallel trans I Ww/Ww } 0 4 {D515R:U -> D529R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 5 {D529R:C -> D515R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 6 {D529R:C -> D530R:G: adjacent_5p inward } 0 7 {D530R:G -> D529R:C: adjacent_3p inward } 0 8 {D530R:G -> D531R:A: adjacent_5p } 0 9 {D531R:A -> D530R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 D518R:C 0 1 D519R:C 0 2 D526R:G 0 3 D527R:U 0 4 D528R:G 0 [Edges] 0 {D518R:C -> D519R:C: adjacent_5p upward } 0 1 {D519R:C -> D518R:C: adjacent_3p downward } 0 2 {D518R:C -> D528R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {D528R:G -> D518R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D519R:C -> D526R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {D526R:G -> D519R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {D526R:G -> D527R:U: adjacent_5p } 0 7 {D527R:U -> D526R:G: adjacent_3p } 0 8 {D527R:U -> D528R:G: adjacent_5p } 0 9 {D528R:G -> D527R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 E114R:A 0 1 E115R:U 0 2 E129R:C 0 3 E130R:G 0 4 E131R:A 0 [Edges] 0 {E114R:A -> E115R:U: adjacent_5p } 0 1 {E115R:U -> E114R:A: adjacent_3p } 0 2 {E114R:A -> E131R:A: pairing parallel trans I Ww/Ww } 0 3 {E131R:A -> E114R:A: pairing parallel trans I Ww/Ww } 0 4 {E115R:U -> E129R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 5 {E129R:C -> E115R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 6 {E129R:C -> E130R:G: adjacent_5p inward } 0 7 {E130R:G -> E129R:C: adjacent_3p inward } 0 8 {E130R:G -> E131R:A: adjacent_5p } 0 9 {E131R:A -> E130R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 E118R:C 0 1 E119R:C 0 2 E126R:G 0 3 E127R:U 0 4 E128R:G 0 [Edges] 0 {E118R:C -> E119R:C: adjacent_5p upward } 0 1 {E119R:C -> E118R:C: adjacent_3p downward } 0 2 {E118R:C -> E128R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E128R:G -> E118R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {E119R:C -> E126R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {E126R:G -> E119R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {E126R:G -> E127R:U: adjacent_5p } 0 7 {E127R:U -> E126R:G: adjacent_3p } 0 8 {E127R:U -> E128R:G: adjacent_5p } 0 9 {E128R:G -> E127R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B7R:A 0 1 B8R:G 0 2 B10R:C 0 3 B11R:G 0 4 B12R:U 0 [Edges] 0 {B7R:A -> B8R:G: adjacent_5p upward } 0 1 {B8R:G -> B7R:A: adjacent_3p downward } 0 2 {B7R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B12R:U -> B7R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B8R:G -> B10R:C: pairing antiparallel trans one_hbond Ss/Hh } 0 5 {B10R:C -> B8R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 6 {B8R:G -> B11R:G: pairing antiparallel trans one_hbond 108 Sw/Hh } 0 7 {B11R:G -> B8R:G: pairing antiparallel trans one_hbond 108 Hh/Sw } 0 8 {B10R:C -> B11R:G: adjacent_5p upward } 0 9 {B11R:G -> B10R:C: adjacent_3p downward } 0 10 {B11R:G -> B12R:U: adjacent_5p } 0 11 {B12R:U -> B11R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 . 2 . 5 . 8 . 3 . 7 9 . 10 4 3 . . 11 . MOLECULE: [GraphModel] [Vertices] 0 B204R:G 0 1 B205R:A 0 2 B214R:U 0 3 B215R:A 0 4 B216R:C 0 [Edges] 0 {B204R:G -> B205R:A: adjacent_5p upward } 0 1 {B205R:A -> B204R:G: adjacent_3p downward } 0 2 {B204R:G -> B216R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B216R:C -> B204R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B205R:A -> B214R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 5 {B214R:U -> B205R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 6 {B205R:A -> B215R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 7 {B215R:A -> B205R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 8 {B214R:U -> B215R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 9 {B215R:A -> B214R:U: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 10 {B215R:A -> B216R:C: adjacent_5p upward } 0 11 {B216R:C -> B215R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 . 2 . 5 . 8 . 3 . 7 9 . 10 4 3 . . 11 . [GraphModel] [Vertices] 0 B205R:A 0 1 B206R:C 0 2 B213R:G 0 3 B214R:U 0 4 B215R:A 0 [Edges] 0 {B205R:A -> B206R:C: adjacent_5p upward } 0 1 {B206R:C -> B205R:A: adjacent_3p downward } 0 2 {B205R:A -> B214R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 3 {B214R:U -> B205R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 4 {B205R:A -> B215R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 5 {B215R:A -> B205R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 6 {B206R:C -> B213R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B213R:G -> B206R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {B213R:G -> B214R:U: adjacent_5p } 0 9 {B214R:U -> B213R:G: adjacent_3p } 0 10 {B214R:U -> B215R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 11 {B215R:A -> B214R:U: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . 2 4 1 1 . 6 . . 2 . 7 . 8 . 3 3 . 9 . 10 4 5 . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A22R:G 0 1 A23R:C 0 2 A5R:G 0 3 A6R:U 0 4 A7R:C 0 [Edges] 0 {A5R:G -> A6R:U: adjacent_5p } 0 1 {A6R:U -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:U -> A7R:C: adjacent_5p } 0 5 {A7R:C -> A6R:U: adjacent_3p } 0 6 {A7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A22R:G -> A23R:C: adjacent_5p upward } 0 9 {A23R:C -> A22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A21R:G 0 1 A22R:G 0 2 A6R:U 0 3 A7R:U 0 4 A8R:C 0 [Edges] 0 {A6R:U -> A7R:U: adjacent_5p } 0 1 {A7R:U -> A6R:U: adjacent_3p } 0 2 {A6R:U -> A22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A22R:G -> A6R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A7R:U -> A8R:C: adjacent_5p } 0 5 {A8R:C -> A7R:U: adjacent_3p } 0 6 {A8R:C -> A21R:G: pairing antiparallel cis Ww/Ww } 0 7 {A21R:G -> A8R:C: pairing antiparallel cis Ww/Ww } 0 8 {A21R:G -> A22R:G: adjacent_5p } 0 9 {A22R:G -> A21R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A23R:A 0 1 A24R:A 0 2 A6R:A 0 3 A7R:G 0 4 A8R:U 0 [Edges] 0 {A6R:A -> A7R:G: adjacent_5p } 0 1 {A7R:G -> A6R:A: adjacent_3p } 0 2 {A6R:A -> A8R:U: outward } 0 3 {A8R:U -> A6R:A: outward } 0 4 {A6R:A -> A24R:A: pairing parallel trans II Hh/Hh } 0 5 {A24R:A -> A6R:A: pairing parallel trans II Hh/Hh } 0 6 {A7R:G -> A8R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {A8R:U -> A7R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {A8R:U -> A23R:A: pairing antiparallel trans XXIV Ww/Hh } 0 9 {A23R:A -> A8R:U: pairing antiparallel trans XXIV Hh/Ww } 0 10 {A23R:A -> A24R:A: adjacent_5p upward } 0 11 {A24R:A -> A23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 A2063R:U 0 1 A2064R:U 0 2 A2081R:A 0 3 A2082R:G 0 4 A2083R:A 0 [Edges] 0 {A2063R:U -> A2064R:U: adjacent_5p } 0 1 {A2064R:U -> A2063R:U: adjacent_3p } 0 2 {A2063R:U -> A2083R:A: pairing antiparallel cis 43 Ww/Ss } 0 3 {A2083R:A -> A2063R:U: pairing antiparallel cis 43 Ss/Ww } 0 4 {A2064R:U -> A2081R:A: pairing antiparallel cis XX Ww/Ww } 0 5 {A2081R:A -> A2064R:U: pairing antiparallel cis XX Ww/Ww } 0 6 {A2081R:A -> A2082R:G: adjacent_5p upward } 0 7 {A2082R:G -> A2081R:A: adjacent_3p downward } 0 8 {A2082R:G -> A2083R:A: adjacent_5p upward } 0 9 {A2083R:A -> A2082R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 A2122R:C 0 1 A2123R:A 0 2 A2270R:G 0 3 A2271R:G 0 4 A2272R:G 0 [Edges] 0 {A2122R:C -> A2123R:A: adjacent_5p } 0 1 {A2123R:A -> A2122R:C: adjacent_3p } 0 2 {A2122R:C -> A2272R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2272R:G -> A2122R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2123R:A -> A2270R:G: pairing antiparallel trans XI Hh/Ss } 0 5 {A2270R:G -> A2123R:A: pairing antiparallel trans XI Ss/Hh } 0 6 {A2123R:A -> A2272R:G: outward } 0 7 {A2272R:G -> A2123R:A: outward } 0 8 {A2270R:G -> A2271R:G: adjacent_5p } 0 9 {A2271R:G -> A2270R:G: adjacent_3p } 0 10 {A2271R:G -> A2272R:G: adjacent_5p } 0 11 {A2272R:G -> A2271R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . 6 2 . 5 . 8 . 3 . . 9 . 10 4 3 7 . 11 . [GraphModel] [Vertices] 0 A2257R:G 0 1 A2258R:A 0 2 A2242R:U 0 3 A2243R:C 0 4 A2244R:A 0 [Edges] 0 {A2242R:U -> A2243R:C: adjacent_5p } 0 1 {A2243R:C -> A2242R:U: adjacent_3p } 0 2 {A2242R:U -> A2257R:G: inward } 0 3 {A2257R:G -> A2242R:U: inward } 0 4 {A2242R:U -> A2258R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {A2258R:A -> A2242R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {A2243R:C -> A2244R:A: adjacent_5p } 0 7 {A2244R:A -> A2243R:C: adjacent_3p } 0 8 {A2244R:A -> A2257R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {A2257R:G -> A2244R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {A2244R:A -> A2258R:A: outward } 0 11 {A2258R:A -> A2244R:A: outward } 0 12 {A2257R:G -> A2258R:A: adjacent_5p } 0 13 {A2258R:A -> A2257R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 12 3 . 9 1 13 . 5 . 11 2 2 4 . 0 . 3 . . 1 . 6 4 8 10 . 7 . [GraphModel] [Vertices] 0 A2298R:C 0 1 A2299R:G 0 2 A2308R:U 0 3 A2309R:C 0 4 A2310R:G 0 [Edges] 0 {A2298R:C -> A2299R:G: adjacent_5p upward } 0 1 {A2299R:G -> A2298R:C: adjacent_3p downward } 0 2 {A2298R:C -> A2310R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2310R:G -> A2298R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2299R:G -> A2308R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 5 {A2308R:U -> A2299R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 6 {A2308R:U -> A2309R:C: adjacent_5p } 0 7 {A2309R:C -> A2308R:U: adjacent_3p } 0 8 {A2309R:C -> A2310R:G: adjacent_5p } 0 9 {A2310R:G -> A2309R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 A2329R:C 0 1 A2330R:U 0 2 A2369R:A 0 3 A2370R:A 0 4 A2371R:G 0 [Edges] 0 {A2329R:C -> A2330R:U: adjacent_5p } 0 1 {A2330R:U -> A2329R:C: adjacent_3p } 0 2 {A2329R:C -> A2371R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2371R:G -> A2329R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2330R:U -> A2369R:A: pairing antiparallel trans XXIV Ww/Hh } 0 5 {A2369R:A -> A2330R:U: pairing antiparallel trans XXIV Hh/Ww } 0 6 {A2369R:A -> A2370R:A: adjacent_5p } 0 7 {A2370R:A -> A2369R:A: adjacent_3p } 0 8 {A2369R:A -> A2371R:G: upward } 0 9 {A2371R:G -> A2369R:A: downward } 0 10 {A2370R:A -> A2371R:G: adjacent_5p } 0 11 {A2371R:G -> A2370R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A2377R:U 0 1 A2378R:U 0 2 A2321R:A 0 3 A2322R:U 0 4 A2323R:G 0 [Edges] 0 {A2321R:A -> A2322R:U: adjacent_5p } 0 1 {A2322R:U -> A2321R:A: adjacent_3p } 0 2 {A2321R:A -> A2323R:G: outward } 0 3 {A2323R:G -> A2321R:A: outward } 0 4 {A2321R:A -> A2378R:U: pairing parallel trans XXI Ww/Ws } 0 5 {A2378R:U -> A2321R:A: pairing parallel trans XXI Ws/Ww } 0 6 {A2322R:U -> A2323R:G: adjacent_5p } 0 7 {A2323R:G -> A2322R:U: adjacent_3p } 0 8 {A2323R:G -> A2377R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {A2377R:U -> A2323R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {A2377R:U -> A2378R:U: adjacent_5p } 0 11 {A2378R:U -> A2377R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 A2407R:G 0 1 A2408R:A 0 2 A2379R:G 0 3 A2380R:A 0 4 A2381R:C 0 [Edges] 0 {A2379R:G -> A2380R:A: adjacent_5p } 0 1 {A2380R:A -> A2379R:G: adjacent_3p } 0 2 {A2379R:G -> A2381R:C: outward } 0 3 {A2381R:C -> A2379R:G: outward } 0 4 {A2379R:G -> A2408R:A: pairing parallel cis one_hbond Hw/Wh } 0 5 {A2408R:A -> A2379R:G: pairing parallel cis one_hbond Wh/Hw } 0 6 {A2380R:A -> A2381R:C: adjacent_5p } 0 7 {A2381R:C -> A2380R:A: adjacent_3p } 0 8 {A2381R:C -> A2407R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A2407R:G -> A2381R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A2407R:G -> A2408R:A: adjacent_5p upward } 0 11 {A2408R:A -> A2407R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 A2454R:C 0 1 A2455R:A 0 2 A2436R:U 0 3 A2437R:A 0 4 A2438R:G 0 [Edges] 0 {A2436R:U -> A2437R:A: adjacent_5p upward } 0 1 {A2437R:A -> A2436R:U: adjacent_3p downward } 0 2 {A2436R:U -> A2455R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A2455R:A -> A2436R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A2437R:A -> A2438R:G: adjacent_5p upward } 0 5 {A2438R:G -> A2437R:A: adjacent_3p downward } 0 6 {A2438R:G -> A2454R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A2454R:C -> A2438R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A2454R:C -> A2455R:A: adjacent_5p } 0 9 {A2455R:A -> A2454R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 A2461R:U 0 1 A2462R:G 0 2 A2427R:C 0 3 A2428R:G 0 4 A2429R:A 0 [Edges] 0 {A2427R:C -> A2428R:G: adjacent_5p } 0 1 {A2428R:G -> A2427R:C: adjacent_3p } 0 2 {A2427R:C -> A2462R:G: pairing parallel cis one_hbond Wh/Hw } 0 3 {A2462R:G -> A2427R:C: pairing parallel cis one_hbond Hw/Wh } 0 4 {A2428R:G -> A2429R:A: adjacent_5p } 0 5 {A2429R:A -> A2428R:G: adjacent_3p } 0 6 {A2428R:G -> A2461R:U: inward } 0 7 {A2461R:U -> A2428R:G: inward } 0 8 {A2428R:G -> A2462R:G: pairing parallel trans one_hbond Hw/C8 } 0 9 {A2462R:G -> A2428R:G: pairing parallel trans one_hbond C8/Hw } 0 10 {A2429R:A -> A2461R:U: pairing antiparallel trans XXIV Hh/Ws } 0 11 {A2461R:U -> A2429R:A: pairing antiparallel trans XXIV Ws/Hh } 0 12 {A2461R:U -> A2462R:G: adjacent_5p } 0 13 {A2462R:G -> A2461R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 12 . 7 11 1 13 . 3 9 . 2 . 2 . 0 . 3 6 8 1 . 4 4 10 . . 5 . [GraphModel] [Vertices] 0 A2477R:C 0 1 A2478R:U 0 2 A2108R:A 0 3 A2109R:U 0 4 A2110R:G 0 [Edges] 0 {A2108R:A -> A2109R:U: adjacent_5p } 0 1 {A2109R:U -> A2108R:A: adjacent_3p } 0 2 {A2108R:A -> A2110R:G: upward } 0 3 {A2110R:G -> A2108R:A: downward } 0 4 {A2108R:A -> A2478R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 5 {A2478R:U -> A2108R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 6 {A2109R:U -> A2110R:G: adjacent_5p } 0 7 {A2110R:G -> A2109R:U: adjacent_3p } 0 8 {A2110R:G -> A2477R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A2477R:C -> A2110R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A2110R:G -> A2478R:U: outward } 0 11 {A2478R:U -> A2110R:G: outward } 0 12 {A2477R:C -> A2478R:U: adjacent_5p } 0 13 {A2478R:U -> A2477R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 12 . . 9 1 13 . 5 . 11 2 . 4 . 0 2 3 . . 1 . 6 4 8 10 3 7 . [GraphModel] [Vertices] 0 A2485R:A 0 1 A2486R:A 0 2 A2102R:G 0 3 A2103R:A 0 4 A2104R:C 0 [Edges] 0 {A2102R:G -> A2103R:A: adjacent_5p } 0 1 {A2103R:A -> A2102R:G: adjacent_3p } 0 2 {A2102R:G -> A2486R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A2486R:A -> A2102R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A2103R:A -> A2104R:C: adjacent_5p } 0 5 {A2104R:C -> A2103R:A: adjacent_3p } 0 6 {A2104R:C -> A2485R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 7 {A2485R:A -> A2104R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 8 {A2104R:C -> A2486R:A: pairing antiparallel cis one_hbond Ws/Bs } 0 9 {A2486R:A -> A2104R:C: pairing antiparallel cis one_hbond Bs/Ws } 0 10 {A2485R:A -> A2486R:A: adjacent_5p upward } 0 11 {A2486R:A -> A2485R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 7 1 11 . 3 . 9 2 . 2 . 0 . 3 . . 1 . 4 4 6 8 . 5 . [GraphModel] [Vertices] 0 A2489R:G 0 1 A2490R:A 0 2 A2531R:U 0 3 A2532R:A 0 4 A2533R:C 0 [Edges] 0 {A2489R:G -> A2490R:A: adjacent_5p upward } 0 1 {A2490R:A -> A2489R:G: adjacent_3p downward } 0 2 {A2489R:G -> A2533R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A2533R:C -> A2489R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A2490R:A -> A2531R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {A2531R:U -> A2490R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {A2531R:U -> A2532R:A: adjacent_5p upward } 0 7 {A2532R:A -> A2531R:U: adjacent_3p downward } 0 8 {A2532R:A -> A2533R:C: adjacent_5p } 0 9 {A2533R:C -> A2532R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 A2528R:U 0 1 A2529R:G 0 2 A2492R:U 0 3 A2493R:C 0 4 A2494R:G 0 [Edges] 0 {A2492R:U -> A2493R:C: adjacent_5p upward } 0 1 {A2493R:C -> A2492R:U: adjacent_3p downward } 0 2 {A2492R:U -> A2529R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A2529R:G -> A2492R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A2493R:C -> A2494R:G: adjacent_5p } 0 5 {A2494R:G -> A2493R:C: adjacent_3p } 0 6 {A2494R:G -> A2528R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A2528R:U -> A2494R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A2528R:U -> A2529R:G: adjacent_5p } 0 9 {A2529R:G -> A2528R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 A2622R:A 0 1 A2623R:G 0 2 A2641R:C 0 3 A2642R:G 0 4 A2643R:G 0 [Edges] 0 {A2622R:A -> A2623R:G: adjacent_5p } 0 1 {A2623R:G -> A2622R:A: adjacent_3p } 0 2 {A2622R:A -> A2643R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A2643R:G -> A2622R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A2623R:G -> A2641R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A2641R:C -> A2623R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A2623R:G -> A2642R:G: outward } 0 7 {A2642R:G -> A2623R:G: outward } 0 8 {A2641R:C -> A2642R:G: adjacent_5p upward } 0 9 {A2642R:G -> A2641R:C: adjacent_3p downward } 0 10 {A2642R:G -> A2643R:G: adjacent_5p upward } 0 11 {A2643R:G -> A2642R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 . 2 . 5 . 8 . 3 . 7 9 . 10 4 3 . . 11 . [GraphModel] [Vertices] 0 A2651R:C 0 1 A2652R:U 0 2 A2092R:G 0 3 A2093R:G 0 4 A2094R:G 0 [Edges] 0 {A2092R:G -> A2093R:G: adjacent_5p pairing parallel cis one_hbond Sw/Hw } 0 1 {A2093R:G -> A2092R:G: adjacent_3p pairing parallel cis one_hbond Hw/Sw } 0 2 {A2092R:G -> A2652R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 3 {A2652R:U -> A2092R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 4 {A2093R:G -> A2094R:G: adjacent_5p upward } 0 5 {A2094R:G -> A2093R:G: adjacent_3p downward } 0 6 {A2093R:G -> A2652R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A2652R:U -> A2093R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A2094R:G -> A2651R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A2651R:C -> A2094R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A2651R:C -> A2652R:U: adjacent_5p upward } 0 11 {A2652R:U -> A2651R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 A2652R:U 0 1 A2653R:A 0 2 A2091R:G 0 3 A2092R:G 0 4 A2093R:G 0 [Edges] 0 {A2091R:G -> A2092R:G: adjacent_5p upward } 0 1 {A2092R:G -> A2091R:G: adjacent_3p downward } 0 2 {A2091R:G -> A2653R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A2653R:A -> A2091R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A2092R:G -> A2093R:G: adjacent_5p pairing parallel cis one_hbond Sw/Hw } 0 5 {A2093R:G -> A2092R:G: adjacent_3p pairing parallel cis one_hbond Hw/Sw } 0 6 {A2092R:G -> A2652R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 7 {A2652R:U -> A2092R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 8 {A2093R:G -> A2652R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {A2652R:U -> A2093R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {A2652R:U -> A2653R:A: adjacent_5p upward } 0 11 {A2653R:A -> A2652R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . 7 9 1 11 . 3 . . 2 . 2 . 0 . 3 6 . 1 . 4 4 8 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A11R:G 0 1 A12R:U 0 2 A16R:G 0 3 A17R:U 0 4 A18R:C 0 [Edges] 0 {A11R:G -> A12R:U: adjacent_5p upward } 0 1 {A12R:U -> A11R:G: adjacent_3p downward } 0 2 {A11R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A18R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A12R:U -> A16R:G: pairing parallel trans XXVII Ww/Ww } 0 5 {A16R:G -> A12R:U: pairing parallel trans XXVII Ww/Ww } 0 6 {A16R:G -> A17R:U: adjacent_5p } 0 7 {A17R:U -> A16R:G: adjacent_3p } 0 8 {A16R:G -> A18R:C: outward } 0 9 {A18R:C -> A16R:G: outward } 0 10 {A17R:U -> A18R:C: adjacent_5p } 0 11 {A18R:C -> A17R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A22R:A 0 1 A23R:A 0 2 A5R:A 0 3 A6R:G 0 4 A7R:U 0 [Edges] 0 {A5R:A -> A6R:G: adjacent_5p } 0 1 {A6R:G -> A5R:A: adjacent_3p } 0 2 {A5R:A -> A7R:U: outward } 0 3 {A7R:U -> A5R:A: outward } 0 4 {A5R:A -> A23R:A: pairing parallel trans II Hh/Hh } 0 5 {A23R:A -> A5R:A: pairing parallel trans II Hh/Hh } 0 6 {A6R:G -> A7R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {A7R:U -> A6R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {A7R:U -> A22R:A: pairing antiparallel trans XXIV Ww/Hh } 0 9 {A22R:A -> A7R:U: pairing antiparallel trans XXIV Hh/Ww } 0 10 {A22R:A -> A23R:A: adjacent_5p upward } 0 11 {A23R:A -> A22R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 D657R:G 0 1 D658R:G 0 2 E747R:C 0 3 E748R:C 0 4 E749R:C 0 [Edges] 0 {D657R:G -> D658R:G: adjacent_5p upward } 0 1 {D658R:G -> D657R:G: adjacent_3p downward } 0 2 {D657R:G -> E749R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E749R:C -> D657R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D658R:G -> E747R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {E747R:C -> D658R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {E747R:C -> E748R:C: adjacent_5p upward } 0 7 {E748R:C -> E747R:C: adjacent_3p downward } 0 8 {E748R:C -> E749R:C: adjacent_5p } 0 9 {E749R:C -> E748R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 E740R:U 0 1 E741R:G 0 2 D664R:G 0 3 D665R:A 0 4 D666R:G 0 [Edges] 0 {D664R:G -> D665R:A: adjacent_5p } 0 1 {D665R:A -> D664R:G: adjacent_3p } 0 2 {D664R:G -> E741R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 3 {E741R:G -> D664R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 4 {D665R:A -> D666R:G: adjacent_5p } 0 5 {D666R:G -> D665R:A: adjacent_3p } 0 6 {D666R:G -> E740R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {E740R:U -> D666R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {D666R:G -> E741R:G: outward } 0 9 {E741R:G -> D666R:G: outward } 0 10 {E740R:U -> E741R:G: adjacent_5p } 0 11 {E741R:G -> E740R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 7 1 11 . 3 . 9 2 . 2 . 0 . 3 . . 1 . 4 4 6 8 . 5 . [GraphModel] [Vertices] 0 E752R:G 0 1 E753R:A 0 2 D652R:U 0 3 D653R:A 0 4 D654R:G 0 [Edges] 0 {D652R:U -> D653R:A: adjacent_5p pairing antiparallel cis one_hbond Ss/C8 } 0 1 {D653R:A -> D652R:U: adjacent_3p pairing antiparallel cis one_hbond C8/Ss } 0 2 {D652R:U -> E752R:G: inward } 0 3 {E752R:G -> D652R:U: inward } 0 4 {D652R:U -> E753R:A: pairing antiparallel trans XXIV Ww/Hh } 0 5 {E753R:A -> D652R:U: pairing antiparallel trans XXIV Hh/Ww } 0 6 {D653R:A -> D654R:G: adjacent_5p } 0 7 {D654R:G -> D653R:A: adjacent_3p } 0 8 {D654R:G -> E752R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 9 {E752R:G -> D654R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 10 {D654R:G -> E753R:A: outward } 0 11 {E753R:A -> D654R:G: outward } 0 12 {E752R:G -> E753R:A: adjacent_5p } 0 13 {E753R:A -> E752R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 12 3 . 9 1 13 . 5 . 11 2 2 4 . 0 . 3 . . 1 . 6 4 8 10 . 7 . [GraphModel] [Vertices] 0 I657R:G 0 1 I658R:G 0 2 J747R:C 0 3 J748R:C 0 4 J749R:C 0 [Edges] 0 {I657R:G -> I658R:G: adjacent_5p upward } 0 1 {I658R:G -> I657R:G: adjacent_3p downward } 0 2 {I657R:G -> J749R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {J749R:C -> I657R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {I658R:G -> J747R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {J747R:C -> I658R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {J747R:C -> J748R:C: adjacent_5p upward } 0 7 {J748R:C -> J747R:C: adjacent_3p downward } 0 8 {J748R:C -> J749R:C: adjacent_5p } 0 9 {J749R:C -> J748R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 J740R:U 0 1 J741R:G 0 2 I664R:G 0 3 I665R:A 0 4 I666R:G 0 [Edges] 0 {I664R:G -> I665R:A: adjacent_5p } 0 1 {I665R:A -> I664R:G: adjacent_3p } 0 2 {I664R:G -> J741R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 3 {J741R:G -> I664R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 4 {I665R:A -> I666R:G: adjacent_5p } 0 5 {I666R:G -> I665R:A: adjacent_3p } 0 6 {I666R:G -> J740R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {J740R:U -> I666R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {I666R:G -> J741R:G: outward } 0 9 {J741R:G -> I666R:G: outward } 0 10 {J740R:U -> J741R:G: adjacent_5p } 0 11 {J741R:G -> J740R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 7 1 11 . 3 . 9 2 . 2 . 0 . 3 . . 1 . 4 4 6 8 . 5 . [GraphModel] [Vertices] 0 J752R:G 0 1 J753R:A 0 2 I652R:U 0 3 I653R:A 0 4 I654R:G 0 [Edges] 0 {I652R:U -> I653R:A: adjacent_5p } 0 1 {I653R:A -> I652R:U: adjacent_3p } 0 2 {I652R:U -> J752R:G: inward } 0 3 {J752R:G -> I652R:U: inward } 0 4 {I652R:U -> J753R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {J753R:A -> I652R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {I653R:A -> I654R:G: adjacent_5p } 0 7 {I654R:G -> I653R:A: adjacent_3p } 0 8 {I654R:G -> J752R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 9 {J752R:G -> I654R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 10 {I654R:G -> J753R:A: outward } 0 11 {J753R:A -> I654R:G: outward } 0 12 {J752R:G -> J753R:A: adjacent_5p } 0 13 {J753R:A -> J752R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 12 3 . 9 1 13 . 5 . 11 2 2 4 . 0 . 3 . . 1 . 6 4 8 10 . 7 . MOLECULE: [GraphModel] [Vertices] 0 A47R:G 0 1 A48R:G 0 2 A71R:G 0 3 A72R:U 0 4 A73R:A 0 [Edges] 0 {A47R:G -> A48R:G: adjacent_5p upward } 0 1 {A48R:G -> A47R:G: adjacent_3p downward } 0 2 {A47R:G -> A73R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A73R:A -> A47R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A48R:G -> A71R:G: pairing parallel trans III Ww/Ww } 0 5 {A71R:G -> A48R:G: pairing parallel trans III Ww/Ww } 0 6 {A71R:G -> A72R:U: adjacent_5p } 0 7 {A72R:U -> A71R:G: adjacent_3p } 0 8 {A71R:G -> A73R:A: outward } 0 9 {A73R:A -> A71R:G: outward } 0 10 {A72R:U -> A73R:A: adjacent_5p } 0 11 {A73R:A -> A72R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A50R:G 0 1 A51R:C 0 2 A67R:G 0 3 A68R:A 0 4 A69R:C 0 [Edges] 0 {A50R:G -> A51R:C: adjacent_5p upward } 0 1 {A51R:C -> A50R:G: adjacent_3p downward } 0 2 {A50R:G -> A69R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A69R:C -> A50R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A51R:C -> A67R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A67R:G -> A51R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A67R:G -> A68R:A: adjacent_5p } 0 7 {A68R:A -> A67R:G: adjacent_3p } 0 8 {A68R:A -> A69R:C: adjacent_5p } 0 9 {A69R:C -> A68R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 A63R:G 0 1 A64R:G 0 2 A54R:C 0 3 A60R:U 0 4 A61R:U 0 [Edges] 0 {A54R:C -> A60R:U: adjacent_5p upward } 0 1 {A60R:U -> A54R:C: adjacent_3p downward } 0 2 {A54R:C -> A64R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A64R:G -> A54R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A60R:U -> A61R:U: adjacent_5p } 0 5 {A61R:U -> A60R:U: adjacent_3p } 0 6 {A61R:U -> A63R:G: pairing antiparallel cis one_hbond Hh/Hw } 0 7 {A63R:G -> A61R:U: pairing antiparallel cis one_hbond Hw/Hh } 0 8 {A63R:G -> A64R:G: adjacent_5p outward } 0 9 {A64R:G -> A63R:G: adjacent_3p outward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 R14R:G 0 1 R15R:G 0 2 R5R:C 0 3 R6R:G 0 4 R7R:C 0 [Edges] 0 {R5R:C -> R6R:G: adjacent_5p } 0 1 {R6R:G -> R5R:C: adjacent_3p } 0 2 {R5R:C -> R7R:C: upward } 0 3 {R7R:C -> R5R:C: downward } 0 4 {R5R:C -> R15R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {R15R:G -> R5R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {R6R:G -> R7R:C: adjacent_5p } 0 7 {R7R:C -> R6R:G: adjacent_3p } 0 8 {R7R:C -> R14R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {R14R:G -> R7R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {R14R:G -> R15R:G: adjacent_5p upward } 0 11 {R15R:G -> R14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 B14R:A 0 1 B15R:G 0 2 B20.AR:C 0 3 B20.BR:A 0 4 B21R:A 0 [Edges] 0 {B14R:A -> B15R:G: adjacent_5p upward } 0 1 {B15R:G -> B14R:A: adjacent_3p downward } 0 2 {B14R:A -> B21R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 3 {B21R:A -> B14R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 4 {B15R:G -> B20.AR:C: pairing parallel trans 119 Ss/Ww } 0 5 {B20.AR:C -> B15R:G: pairing parallel trans 119 Ww/Ss } 0 6 {B20.AR:C -> B20.BR:A: adjacent_5p } 0 7 {B20.BR:A -> B20.AR:C: adjacent_3p } 0 8 {B20.BR:A -> B21R:A: adjacent_5p } 0 9 {B21R:A -> B20.BR:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 C28R:U 0 1 C29R:G 0 2 C9R:U 0 3 C10R:A 0 4 C11R:A 0 [Edges] 0 {C9R:U -> C10R:A: adjacent_5p upward } 0 1 {C10R:A -> C9R:U: adjacent_3p downward } 0 2 {C9R:U -> C29R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {C29R:G -> C9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {C10R:A -> C11R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 5 {C11R:A -> C10R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 6 {C11R:A -> C28R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {C28R:U -> C11R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {C11R:A -> C29R:G: outward } 0 9 {C29R:G -> C11R:A: outward } 0 10 {C28R:U -> C29R:G: adjacent_5p upward } 0 11 {C29R:G -> C28R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 7 1 11 . 3 . 9 2 . 2 . 0 . 3 . . 1 . 4 4 6 8 . 5 . [GraphModel] [Vertices] 0 D28R:U 0 1 D29R:G 0 2 D9R:U 0 3 D10R:A 0 4 D11R:A 0 [Edges] 0 {D9R:U -> D10R:A: adjacent_5p upward } 0 1 {D10R:A -> D9R:U: adjacent_3p downward } 0 2 {D9R:U -> D29R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {D29R:G -> D9R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {D10R:A -> D11R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 5 {D11R:A -> D10R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 6 {D11R:A -> D28R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {D28R:U -> D11R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {D11R:A -> D29R:G: outward } 0 9 {D29R:G -> D11R:A: outward } 0 10 {D28R:U -> D29R:G: adjacent_5p upward } 0 11 {D29R:G -> D28R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 7 1 11 . 3 . 9 2 . 2 . 0 . 3 . . 1 . 4 4 6 8 . 5 . MOLECULE: [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:G 0 2 A26R:G 0 3 A27R:U 0 4 A28R:A 0 [Edges] 0 {A7R:G -> A8R:G: adjacent_5p } 0 1 {A8R:G -> A7R:G: adjacent_3p } 0 2 {A7R:G -> A28R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A28R:A -> A7R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A8R:G -> A26R:G: pairing parallel trans III Ww/Ww } 0 5 {A26R:G -> A8R:G: pairing parallel trans III Ww/Ww } 0 6 {A26R:G -> A27R:U: adjacent_5p } 0 7 {A27R:U -> A26R:G: adjacent_3p } 0 8 {A26R:G -> A28R:A: outward } 0 9 {A28R:A -> A26R:G: outward } 0 10 {A27R:U -> A28R:A: adjacent_5p } 0 11 {A28R:A -> A27R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A10R:G 0 1 A11R:C 0 2 A22R:G 0 3 A23R:A 0 4 A24R:C 0 [Edges] 0 {A10R:G -> A11R:C: adjacent_5p } 0 1 {A11R:C -> A10R:G: adjacent_3p } 0 2 {A10R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:C -> A10R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A11R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A22R:G -> A11R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A22R:G -> A23R:A: adjacent_5p } 0 7 {A23R:A -> A22R:G: adjacent_3p } 0 8 {A22R:G -> A24R:C: upward } 0 9 {A24R:C -> A22R:G: downward } 0 10 {A23R:A -> A24R:C: adjacent_5p } 0 11 {A24R:C -> A23R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . MOLECULE: [GraphModel] [Vertices] 0 A9R:U 0 1 A10R:A 0 2 B4R:U 0 3 B5R:A 0 4 B6R:A 0 [Edges] 0 {A9R:U -> A10R:A: adjacent_5p upward } 0 1 {A10R:A -> A9R:U: adjacent_3p downward } 0 2 {A9R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B6R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A10R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {B4R:U -> A10R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {A10R:A -> B6R:A: outward } 0 7 {B6R:A -> A10R:A: outward } 0 8 {B4R:U -> B5R:A: adjacent_5p } 0 9 {B5R:A -> B4R:U: adjacent_3p } 0 10 {B5R:A -> B6R:A: adjacent_5p } 0 11 {B6R:A -> B5R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . 6 2 . 5 . 8 . 3 . . 9 . 10 4 3 7 . 11 . [GraphModel] [Vertices] 0 B9R:U 0 1 B10R:A 0 2 A4R:U 0 3 A5R:A 0 4 A6R:A 0 [Edges] 0 {A4R:U -> A5R:A: adjacent_5p } 0 1 {A5R:A -> A4R:U: adjacent_3p } 0 2 {A4R:U -> B10R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B10R:A -> A4R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:A -> A6R:A: adjacent_5p } 0 5 {A6R:A -> A5R:A: adjacent_3p } 0 6 {A6R:A -> B9R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B9R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:A -> B10R:A: outward } 0 9 {B10R:A -> A6R:A: outward } 0 10 {B9R:U -> B10R:A: adjacent_5p upward } 0 11 {B10R:A -> B9R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 7 1 11 . 3 . 9 2 . 2 . 0 . 3 . . 1 . 4 4 6 8 . 5 . MOLECULE: [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:A 0 2 A15R:A 0 3 A16R:G 0 4 A17R:U 0 [Edges] 0 {A6R:A -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> A17R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {A17R:U -> A6R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {A7R:A -> A15R:A: pairing parallel trans II Hh/Hh } 0 5 {A15R:A -> A7R:A: pairing parallel trans II Hh/Hh } 0 6 {A15R:A -> A16R:G: adjacent_5p } 0 7 {A16R:G -> A15R:A: adjacent_3p } 0 8 {A15R:A -> A17R:U: outward } 0 9 {A17R:U -> A15R:A: outward } 0 10 {A16R:G -> A17R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {A17R:U -> A16R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A14R:A 0 1 A15R:A 0 2 A7R:A 0 3 A8R:A 0 4 A9R:U 0 [Edges] 0 {A7R:A -> A8R:A: adjacent_5p upward } 0 1 {A8R:A -> A7R:A: adjacent_3p downward } 0 2 {A7R:A -> A15R:A: pairing parallel trans II Hh/Hh } 0 3 {A15R:A -> A7R:A: pairing parallel trans II Hh/Hh } 0 4 {A8R:A -> A9R:U: adjacent_5p } 0 5 {A9R:U -> A8R:A: adjacent_3p } 0 6 {A9R:U -> A14R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {A14R:A -> A9R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {A14R:A -> A15R:A: adjacent_5p } 0 9 {A15R:A -> A14R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 B545R:A 0 1 B546R:U 0 2 B525R:A 0 3 B526R:C 0 4 B527R:G 0 [Edges] 0 {B525R:A -> B526R:C: adjacent_5p upward } 0 1 {B526R:C -> B525R:A: adjacent_3p downward } 0 2 {B525R:A -> B546R:U: pairing antiparallel trans one_hbond 52 Hw/Wh } 0 3 {B546R:U -> B525R:A: pairing antiparallel trans one_hbond 52 Wh/Hw } 0 4 {B526R:C -> B527R:G: adjacent_5p upward } 0 5 {B527R:G -> B526R:C: adjacent_3p downward } 0 6 {B527R:G -> B545R:A: pairing antiparallel cis VIII Ww/Ww } 0 7 {B545R:A -> B527R:G: pairing antiparallel cis VIII Ww/Ww } 0 8 {B545R:A -> B546R:U: adjacent_5p upward } 0 9 {B546R:U -> B545R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 B546R:U 0 1 B547R:G 0 2 B523R:G 0 3 B524R:A 0 4 B525R:A 0 [Edges] 0 {B523R:G -> B524R:A: adjacent_5p upward } 0 1 {B524R:A -> B523R:G: adjacent_3p downward } 0 2 {B523R:G -> B547R:G: pairing antiparallel trans VII Hh/Ww } 0 3 {B547R:G -> B523R:G: pairing antiparallel trans VII Ww/Hh } 0 4 {B524R:A -> B525R:A: adjacent_5p upward } 0 5 {B525R:A -> B524R:A: adjacent_3p downward } 0 6 {B525R:A -> B546R:U: pairing antiparallel trans one_hbond 52 Hw/Wh } 0 7 {B546R:U -> B525R:A: pairing antiparallel trans one_hbond 52 Wh/Hw } 0 8 {B546R:U -> B547R:G: adjacent_5p } 0 9 {B547R:G -> B546R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A6R:U 0 1 A7R:U 0 2 A10R:A 0 3 A11R:A 0 4 A12R:A 0 [Edges] 0 {A6R:U -> A7R:U: adjacent_5p } 0 1 {A7R:U -> A6R:U: adjacent_3p } 0 2 {A6R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A12R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:U -> A10R:A: pairing antiparallel trans one_hbond Bs/Hw } 0 5 {A10R:A -> A7R:U: pairing antiparallel trans one_hbond Hw/Bs } 0 6 {A10R:A -> A11R:A: adjacent_5p upward } 0 7 {A11R:A -> A10R:A: adjacent_3p downward } 0 8 {A11R:A -> A12R:A: adjacent_5p } 0 9 {A12R:A -> A11R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 F20R:A 0 1 F21R:A 0 2 C9R:A 0 3 C10R:G 0 4 C11R:U 0 [Edges] 0 {C9R:A -> C10R:G: adjacent_5p } 0 1 {C10R:G -> C9R:A: adjacent_3p } 0 2 {C9R:A -> C11R:U: outward } 0 3 {C11R:U -> C9R:A: outward } 0 4 {C9R:A -> F21R:A: pairing parallel trans II Hh/Hh } 0 5 {F21R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 6 {C10R:G -> C11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {C11R:U -> C10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {C11R:U -> F20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 9 {F20R:A -> C11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 10 {F20R:A -> F21R:A: adjacent_5p upward } 0 11 {F21R:A -> F20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 D20R:A 0 1 D21R:A 0 2 D9R:A 0 3 D10R:G 0 4 D11R:U 0 [Edges] 0 {D9R:A -> D10R:G: adjacent_5p } 0 1 {D10R:G -> D9R:A: adjacent_3p } 0 2 {D9R:A -> D11R:U: outward } 0 3 {D11R:U -> D9R:A: outward } 0 4 {D9R:A -> D21R:A: pairing parallel trans II Hh/Hh } 0 5 {D21R:A -> D9R:A: pairing parallel trans II Hh/Hh } 0 6 {D10R:G -> D11R:U: adjacent_5p } 0 7 {D11R:U -> D10R:G: adjacent_3p } 0 8 {D11R:U -> D20R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {D20R:A -> D11R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {D20R:A -> D21R:A: adjacent_5p upward } 0 11 {D21R:A -> D20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 C20R:A 0 1 C21R:A 0 2 C9R:A 0 3 C10R:G 0 4 C11R:U 0 [Edges] 0 {C9R:A -> C10R:G: adjacent_5p } 0 1 {C10R:G -> C9R:A: adjacent_3p } 0 2 {C9R:A -> C11R:U: outward } 0 3 {C11R:U -> C9R:A: outward } 0 4 {C9R:A -> C21R:A: pairing parallel trans II Hh/Hh } 0 5 {C21R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 6 {C10R:G -> C11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {C11R:U -> C10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {C11R:U -> C20R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {C20R:A -> C11R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {C20R:A -> C21R:A: adjacent_5p upward } 0 11 {C21R:A -> C20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 D20R:A 0 1 D21R:A 0 2 D9R:A 0 3 D10R:G 0 4 D11R:U 0 [Edges] 0 {D9R:A -> D10R:G: adjacent_5p } 0 1 {D10R:G -> D9R:A: adjacent_3p } 0 2 {D9R:A -> D11R:U: outward } 0 3 {D11R:U -> D9R:A: outward } 0 4 {D9R:A -> D21R:A: pairing parallel trans II Hh/Hh } 0 5 {D21R:A -> D9R:A: pairing parallel trans II Hh/Hh } 0 6 {D10R:G -> D11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {D11R:U -> D10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {D11R:U -> D20R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {D20R:A -> D11R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {D20R:A -> D21R:A: adjacent_5p upward } 0 11 {D21R:A -> D20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 A16R:C 0 1 A17R:C 0 2 A5R:G 0 3 A6R:U 0 4 A7R:G 0 [Edges] 0 {A5R:G -> A6R:U: adjacent_5p } 0 1 {A6R:U -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A7R:G: upward } 0 3 {A7R:G -> A5R:G: downward } 0 4 {A5R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A17R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A6R:U -> A7R:G: adjacent_5p } 0 7 {A7R:G -> A6R:U: adjacent_3p } 0 8 {A7R:G -> A16R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A16R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A16R:C -> A17R:C: adjacent_5p } 0 11 {A17R:C -> A16R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 A6R:U 0 1 A7R:U 0 2 A9R:U 0 3 A10R:C 0 4 A11R:A 0 [Edges] 0 {A6R:U -> A7R:U: adjacent_5p upward } 0 1 {A7R:U -> A6R:U: adjacent_3p downward } 0 2 {A6R:U -> A11R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {A11R:A -> A6R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A7R:U -> A9R:U: pairing parallel cis one_hbond Ws/Hh } 0 5 {A9R:U -> A7R:U: pairing parallel cis one_hbond Hh/Ws } 0 6 {A9R:U -> A10R:C: adjacent_5p } 0 7 {A10R:C -> A9R:U: adjacent_3p } 0 8 {A9R:U -> A11R:A: outward } 0 9 {A11R:A -> A9R:U: outward } 0 10 {A10R:C -> A11R:A: adjacent_5p } 0 11 {A11R:A -> A10R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . MOLECULE: [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 B12R:U 0 3 B13R:A 0 4 B14R:C 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B14R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B14R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> B12R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {B12R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {A5R:A -> B14R:C: outward } 0 7 {B14R:C -> A5R:A: outward } 0 8 {B12R:U -> B13R:A: adjacent_5p } 0 9 {B13R:A -> B12R:U: adjacent_3p } 0 10 {B13R:A -> B14R:C: adjacent_5p } 0 11 {B14R:C -> B13R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . 6 2 . 5 . 8 . 3 . . 9 . 10 4 3 7 . 11 . [GraphModel] [Vertices] 0 C24R:G 0 1 C25R:A 0 2 D32R:U 0 3 D33R:A 0 4 D34R:C 0 [Edges] 0 {C24R:G -> C25R:A: adjacent_5p upward } 0 1 {C25R:A -> C24R:G: adjacent_3p downward } 0 2 {C24R:G -> D34R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D34R:C -> C24R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C25R:A -> D32R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {D32R:U -> C25R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {D32R:U -> D33R:A: adjacent_5p } 0 7 {D33R:A -> D32R:U: adjacent_3p } 0 8 {D33R:A -> D34R:C: adjacent_5p } 0 9 {D34R:C -> D33R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A21R:G 0 1 A22R:G 0 2 A12R:C 0 3 A13R:G 0 4 A14R:C 0 [Edges] 0 {A12R:C -> A13R:G: adjacent_5p upward } 0 1 {A13R:G -> A12R:C: adjacent_3p downward } 0 2 {A12R:C -> A22R:G: pairing antiparallel cis one_hbond Bh/Wh } 0 3 {A22R:G -> A12R:C: pairing antiparallel cis one_hbond Wh/Bh } 0 4 {A13R:G -> A14R:C: adjacent_5p upward } 0 5 {A14R:C -> A13R:G: adjacent_3p downward } 0 6 {A14R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A21R:G -> A22R:G: adjacent_5p } 0 9 {A22R:G -> A21R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 B20R:C 0 1 B21R:C 0 2 A5R:G 0 3 A6R:A 0 4 A7R:G 0 [Edges] 0 {A5R:G -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:G: adjacent_3p downward } 0 2 {A5R:G -> B21R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B21R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:A -> A7R:G: adjacent_5p upward } 0 5 {A7R:G -> A6R:A: adjacent_3p downward } 0 6 {A7R:G -> B20R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B20R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B20R:C -> B21R:C: adjacent_5p upward } 0 9 {B21R:C -> B20R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 9R:G 0 1 10R:G 0 2 30R:C 0 3 31R:C 0 4 32R:G 0 [Edges] 0 {9R:G -> 10R:G: adjacent_5p upward } 0 1 {10R:G -> 9R:G: adjacent_3p downward } 0 2 {9R:G -> 31R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {31R:C -> 9R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {9R:G -> 32R:G: pairing antiparallel trans 34 Bs/Hh } 0 5 {32R:G -> 9R:G: pairing antiparallel trans 34 Hh/Bs } 0 6 {10R:G -> 30R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {30R:C -> 10R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {30R:C -> 31R:C: adjacent_5p upward } 0 9 {31R:C -> 30R:C: adjacent_3p downward } 0 10 {31R:C -> 32R:G: adjacent_5p } 0 11 {32R:G -> 31R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . 2 4 1 1 . 6 . . 2 . 7 . 8 . 3 3 . 9 . 10 4 5 . . 11 . MOLECULE: [GraphModel] [Vertices] 0 A3R:G 0 1 A4R:C 0 2 A12R:G 0 3 A13R:G 0 4 A14R:C 0 [Edges] 0 {A3R:G -> A4R:C: adjacent_5p } 0 1 {A4R:C -> A3R:G: adjacent_3p } 0 2 {A3R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A14R:C -> A3R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:C -> A12R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 5 {A12R:G -> A4R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 6 {A12R:G -> A13R:G: adjacent_5p upward } 0 7 {A13R:G -> A12R:G: adjacent_3p downward } 0 8 {A13R:G -> A14R:C: adjacent_5p upward } 0 9 {A14R:C -> A13R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B29R:G 0 1 B30R:G 0 2 A11R:A 0 3 A12R:G 0 4 A13R:U 0 [Edges] 0 {A11R:A -> A12R:G: adjacent_5p } 0 1 {A12R:G -> A11R:A: adjacent_3p } 0 2 {A11R:A -> B30R:G: pairing parallel cis one_hbond 66 Wh/Wh } 0 3 {B30R:G -> A11R:A: pairing parallel cis one_hbond 66 Wh/Wh } 0 4 {A12R:G -> A13R:U: adjacent_5p upward } 0 5 {A13R:U -> A12R:G: adjacent_3p downward } 0 6 {A13R:U -> B29R:G: pairing antiparallel trans one_hbond Bh/Ww } 0 7 {B29R:G -> A13R:U: pairing antiparallel trans one_hbond Ww/Bh } 0 8 {B29R:G -> B30R:G: adjacent_5p } 0 9 {B30R:G -> B29R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A22R:A 0 1 A23R:C 0 2 A9R:A 0 3 A10R:U 0 4 A11R:G 0 [Edges] 0 {A9R:A -> A10R:U: adjacent_5p } 0 1 {A10R:U -> A9R:A: adjacent_3p } 0 2 {A9R:A -> A11R:G: outward } 0 3 {A11R:G -> A9R:A: outward } 0 4 {A9R:A -> A23R:C: pairing parallel trans XXVI Ww/Ww } 0 5 {A23R:C -> A9R:A: pairing parallel trans XXVI Ww/Ww } 0 6 {A10R:U -> A11R:G: adjacent_5p } 0 7 {A11R:G -> A10R:U: adjacent_3p } 0 8 {A11R:G -> A22R:A: pairing antiparallel cis VIII Ww/Ww } 0 9 {A22R:A -> A11R:G: pairing antiparallel cis VIII Ww/Ww } 0 10 {A22R:A -> A23R:C: adjacent_5p upward } 0 11 {A23R:C -> A22R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 A23R:C 0 1 A24R:G 0 2 A7R:C 0 3 A8R:A 0 4 A9R:A 0 [Edges] 0 {A7R:C -> A8R:A: adjacent_5p upward } 0 1 {A8R:A -> A7R:C: adjacent_3p downward } 0 2 {A7R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:A -> A9R:A: adjacent_5p inward } 0 5 {A9R:A -> A8R:A: adjacent_3p inward } 0 6 {A9R:A -> A23R:C: pairing parallel trans XXVI Ww/Ww } 0 7 {A23R:C -> A9R:A: pairing parallel trans XXVI Ww/Ww } 0 8 {A23R:C -> A24R:G: adjacent_5p } 0 9 {A24R:G -> A23R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 R14R:C 0 1 R15R:C 0 2 R5R:G 0 3 R6R:C 0 4 R7R:G 0 [Edges] 0 {R5R:G -> R6R:C: adjacent_5p } 0 1 {R6R:C -> R5R:G: adjacent_3p } 0 2 {R5R:G -> R7R:G: upward } 0 3 {R7R:G -> R5R:G: downward } 0 4 {R5R:G -> R15R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {R15R:C -> R5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {R6R:C -> R7R:G: adjacent_5p } 0 7 {R7R:G -> R6R:C: adjacent_3p } 0 8 {R7R:G -> R14R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {R14R:C -> R7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {R7R:G -> R15R:C: outward } 0 11 {R15R:C -> R7R:G: outward } 0 12 {R14R:C -> R15R:C: adjacent_5p } 0 13 {R15R:C -> R14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 12 . . 9 1 13 . 5 . 11 2 . 4 . 0 2 3 . . 1 . 6 4 8 10 3 7 . [GraphModel] [Vertices] 0 S14R:C 0 1 S15R:C 0 2 S5R:G 0 3 S6R:C 0 4 S7R:G 0 [Edges] 0 {S5R:G -> S6R:C: adjacent_5p } 0 1 {S6R:C -> S5R:G: adjacent_3p } 0 2 {S5R:G -> S7R:G: upward } 0 3 {S7R:G -> S5R:G: downward } 0 4 {S5R:G -> S15R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {S15R:C -> S5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {S6R:C -> S7R:G: adjacent_5p } 0 7 {S7R:G -> S6R:C: adjacent_3p } 0 8 {S7R:G -> S14R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {S14R:C -> S7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {S14R:C -> S15R:C: adjacent_5p } 0 11 {S15R:C -> S14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 B21R:G 0 1 B22R:G 0 2 B46R:C 0 3 B47R:C 0 4 B48R:C 0 [Edges] 0 {B21R:G -> B22R:G: adjacent_5p upward } 0 1 {B22R:G -> B21R:G: adjacent_3p downward } 0 2 {B21R:G -> B48R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B48R:C -> B21R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B22R:G -> B46R:C: pairing antiparallel cis one_hbond 130 Ww/Ws } 0 5 {B46R:C -> B22R:G: pairing antiparallel cis one_hbond 130 Ws/Ww } 0 6 {B46R:C -> B47R:C: adjacent_5p } 0 7 {B47R:C -> B46R:C: adjacent_3p } 0 8 {B47R:C -> B48R:C: adjacent_5p } 0 9 {B48R:C -> B47R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 B39R:U 0 1 B40R:G 0 2 B28R:G 0 3 B29R:A 0 4 B30R:G 0 [Edges] 0 {B28R:G -> B29R:A: adjacent_5p } 0 1 {B29R:A -> B28R:G: adjacent_3p } 0 2 {B28R:G -> B40R:G: pairing antiparallel cis one_hbond 115 Ww/Wh } 0 3 {B40R:G -> B28R:G: pairing antiparallel cis one_hbond 115 Wh/Ww } 0 4 {B29R:A -> B30R:G: adjacent_5p } 0 5 {B30R:G -> B29R:A: adjacent_3p } 0 6 {B30R:G -> B39R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B39R:U -> B30R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B30R:G -> B40R:G: outward } 0 9 {B40R:G -> B30R:G: outward } 0 10 {B39R:U -> B40R:G: adjacent_5p } 0 11 {B40R:G -> B39R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 7 1 11 . 3 . 9 2 . 2 . 0 . 3 . . 1 . 4 4 6 8 . 5 . MOLECULE: [GraphModel] [Vertices] 0 A15R:C 0 1 A16R:U 0 2 A55R:A 0 3 A56R:U 0 4 A57R:G 0 [Edges] 0 {A15R:C -> A16R:U: adjacent_5p } 0 1 {A16R:U -> A15R:C: adjacent_3p } 0 2 {A15R:C -> A57R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A57R:G -> A15R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A16R:U -> A55R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {A55R:A -> A16R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {A55R:A -> A56R:U: adjacent_5p } 0 7 {A56R:U -> A55R:A: adjacent_3p } 0 8 {A55R:A -> A57R:G: upward } 0 9 {A57R:G -> A55R:A: downward } 0 10 {A56R:U -> A57R:G: adjacent_5p } 0 11 {A57R:G -> A56R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . MOLECULE: [GraphModel] [Vertices] 0 C3R:A 0 1 C4R:U 0 2 C25R:A 0 3 C26R:A 0 4 C27R:A 0 [Edges] 0 {C3R:A -> C4R:U: adjacent_5p upward } 0 1 {C4R:U -> C3R:A: adjacent_3p downward } 0 2 {C3R:A -> C27R:A: pairing antiparallel trans 41 Ss/Hh } 0 3 {C27R:A -> C3R:A: pairing antiparallel trans 41 Hh/Ss } 0 4 {C4R:U -> C25R:A: pairing antiparallel cis XX Ww/Ww } 0 5 {C25R:A -> C4R:U: pairing antiparallel cis XX Ww/Ww } 0 6 {C25R:A -> C26R:A: adjacent_5p } 0 7 {C26R:A -> C25R:A: adjacent_3p } 0 8 {C26R:A -> C27R:A: adjacent_5p } 0 9 {C27R:A -> C26R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A7R:G 0 1 A8R:C 0 2 A12R:G 0 3 A13R:U 0 4 A14R:C 0 [Edges] 0 {A7R:G -> A8R:C: adjacent_5p upward } 0 1 {A8R:C -> A7R:G: adjacent_3p downward } 0 2 {A7R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A14R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A8R:C -> A12R:G: pairing antiparallel trans one_hbond 117 Wh/Hh } 0 5 {A12R:G -> A8R:C: pairing antiparallel trans one_hbond 117 Hh/Wh } 0 6 {A12R:G -> A13R:U: adjacent_5p } 0 7 {A13R:U -> A12R:G: adjacent_3p } 0 8 {A12R:G -> A14R:C: upward } 0 9 {A14R:C -> A12R:G: downward } 0 10 {A13R:U -> A14R:C: adjacent_5p } 0 11 {A14R:C -> A13R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A14R:C 0 1 A15R:C 0 2 A23R:A 0 3 A24R:A 0 4 A25R:A 0 [Edges] 0 {A14R:C -> A15R:C: adjacent_5p } 0 1 {A15R:C -> A14R:C: adjacent_3p } 0 2 {A14R:C -> A25R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 3 {A25R:A -> A14R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 4 {A15R:C -> A23R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 5 {A23R:A -> A15R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 6 {A23R:A -> A24R:A: adjacent_5p upward } 0 7 {A24R:A -> A23R:A: adjacent_3p downward } 0 8 {A24R:A -> A25R:A: adjacent_5p upward } 0 9 {A25R:A -> A24R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 A25R:A 0 1 A26R:C 0 2 A12R:G 0 3 A13R:U 0 4 A14R:C 0 [Edges] 0 {A12R:G -> A13R:U: adjacent_5p } 0 1 {A13R:U -> A12R:G: adjacent_3p } 0 2 {A12R:G -> A14R:C: upward } 0 3 {A14R:C -> A12R:G: downward } 0 4 {A12R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A26R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A13R:U -> A14R:C: adjacent_5p } 0 7 {A14R:C -> A13R:U: adjacent_3p } 0 8 {A14R:C -> A25R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 9 {A25R:A -> A14R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 10 {A25R:A -> A26R:C: adjacent_5p upward } 0 11 {A26R:C -> A25R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 A134R:G 0 1 A135R:U 0 2 A187R:A 0 3 A188R:G 0 4 A189R:C 0 [Edges] 0 {A134R:G -> A135R:U: adjacent_5p upward } 0 1 {A135R:U -> A134R:G: adjacent_3p downward } 0 2 {A134R:G -> A189R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A189R:C -> A134R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A135R:U -> A187R:A: pairing parallel cis XXIII Ww/Hh } 0 5 {A187R:A -> A135R:U: pairing parallel cis XXIII Hh/Ww } 0 6 {A187R:A -> A188R:G: adjacent_5p } 0 7 {A188R:G -> A187R:A: adjacent_3p } 0 8 {A187R:A -> A189R:C: outward } 0 9 {A189R:C -> A187R:A: outward } 0 10 {A188R:G -> A189R:C: adjacent_5p } 0 11 {A189R:C -> A188R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A192R:A 0 1 A193R:C 0 2 A129R:G 0 3 A130R:U 0 4 A131R:U 0 [Edges] 0 {A129R:G -> A130R:U: adjacent_5p } 0 1 {A130R:U -> A129R:G: adjacent_3p } 0 2 {A129R:G -> A193R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A193R:C -> A129R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A130R:U -> A131R:U: adjacent_5p } 0 5 {A131R:U -> A130R:U: adjacent_3p } 0 6 {A131R:U -> A192R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A192R:A -> A131R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A192R:A -> A193R:C: adjacent_5p upward } 0 9 {A193R:C -> A192R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 A205R:U 0 1 A206R:A 0 2 A114R:A 0 3 A115R:A 0 4 A116R:G 0 [Edges] 0 {A114R:A -> A115R:A: adjacent_5p upward } 0 1 {A115R:A -> A114R:A: adjacent_3p downward } 0 2 {A114R:A -> A206R:A: pairing antiparallel trans one_hbond 41 Hh/Ss } 0 3 {A206R:A -> A114R:A: pairing antiparallel trans one_hbond 41 Ss/Hh } 0 4 {A115R:A -> A116R:G: adjacent_5p upward } 0 5 {A116R:G -> A115R:A: adjacent_3p downward } 0 6 {A116R:G -> A205R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A205R:U -> A116R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A205R:U -> A206R:A: adjacent_5p upward } 0 9 {A206R:A -> A205R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 A223R:C 0 1 A224R:U 0 2 A248R:A 0 3 A249R:U 0 4 A250R:G 0 [Edges] 0 {A223R:C -> A224R:U: adjacent_5p upward } 0 1 {A224R:U -> A223R:C: adjacent_3p downward } 0 2 {A223R:C -> A250R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A250R:G -> A223R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A224R:U -> A248R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {A248R:A -> A224R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {A248R:A -> A249R:U: adjacent_5p } 0 7 {A249R:U -> A248R:A: adjacent_3p } 0 8 {A248R:A -> A250R:G: upward } 0 9 {A250R:G -> A248R:A: downward } 0 10 {A249R:U -> A250R:G: adjacent_5p } 0 11 {A250R:G -> A249R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A226R:A 0 1 A227R:G 0 2 A247R:U 0 3 A248R:A 0 4 A249R:U 0 [Edges] 0 {A226R:A -> A227R:G: adjacent_5p upward } 0 1 {A227R:G -> A226R:A: adjacent_3p downward } 0 2 {A226R:A -> A249R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A249R:U -> A226R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A227R:G -> A247R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 5 {A247R:U -> A227R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 6 {A247R:U -> A248R:A: adjacent_5p } 0 7 {A248R:A -> A247R:U: adjacent_3p } 0 8 {A248R:A -> A249R:U: adjacent_5p } 0 9 {A249R:U -> A248R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 B134R:G 0 1 B135R:U 0 2 B187R:A 0 3 B188R:G 0 4 B189R:C 0 [Edges] 0 {B134R:G -> B135R:U: adjacent_5p upward } 0 1 {B135R:U -> B134R:G: adjacent_3p downward } 0 2 {B134R:G -> B189R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B189R:C -> B134R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B135R:U -> B187R:A: pairing parallel cis XXIII Ww/Hh } 0 5 {B187R:A -> B135R:U: pairing parallel cis XXIII Hh/Ww } 0 6 {B187R:A -> B188R:G: adjacent_5p } 0 7 {B188R:G -> B187R:A: adjacent_3p } 0 8 {B187R:A -> B189R:C: outward } 0 9 {B189R:C -> B187R:A: outward } 0 10 {B188R:G -> B189R:C: adjacent_5p } 0 11 {B189R:C -> B188R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 B192R:A 0 1 B193R:C 0 2 B129R:G 0 3 B130R:U 0 4 B131R:U 0 [Edges] 0 {B129R:G -> B130R:U: adjacent_5p } 0 1 {B130R:U -> B129R:G: adjacent_3p } 0 2 {B129R:G -> B193R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B193R:C -> B129R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B130R:U -> B131R:U: adjacent_5p } 0 5 {B131R:U -> B130R:U: adjacent_3p } 0 6 {B131R:U -> B192R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {B192R:A -> B131R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {B192R:A -> B193R:C: adjacent_5p upward } 0 9 {B193R:C -> B192R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 B205R:U 0 1 B206R:A 0 2 B114R:A 0 3 B115R:A 0 4 B116R:G 0 [Edges] 0 {B114R:A -> B115R:A: adjacent_5p upward } 0 1 {B115R:A -> B114R:A: adjacent_3p downward } 0 2 {B114R:A -> B206R:A: pairing antiparallel trans one_hbond 41 Hh/Ss } 0 3 {B206R:A -> B114R:A: pairing antiparallel trans one_hbond 41 Ss/Hh } 0 4 {B115R:A -> B116R:G: adjacent_5p upward } 0 5 {B116R:G -> B115R:A: adjacent_3p downward } 0 6 {B116R:G -> B205R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {B205R:U -> B116R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {B205R:U -> B206R:A: adjacent_5p upward } 0 9 {B206R:A -> B205R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 B223R:C 0 1 B224R:U 0 2 B248R:A 0 3 B249R:U 0 4 B250R:G 0 [Edges] 0 {B223R:C -> B224R:U: adjacent_5p upward } 0 1 {B224R:U -> B223R:C: adjacent_3p downward } 0 2 {B223R:C -> B250R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B250R:G -> B223R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B224R:U -> B248R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {B248R:A -> B224R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {B248R:A -> B249R:U: adjacent_5p } 0 7 {B249R:U -> B248R:A: adjacent_3p } 0 8 {B248R:A -> B250R:G: upward } 0 9 {B250R:G -> B248R:A: downward } 0 10 {B249R:U -> B250R:G: adjacent_5p } 0 11 {B250R:G -> B249R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 B226R:A 0 1 B227R:G 0 2 B247R:U 0 3 B248R:A 0 4 B249R:U 0 [Edges] 0 {B226R:A -> B227R:G: adjacent_5p upward } 0 1 {B227R:G -> B226R:A: adjacent_3p downward } 0 2 {B226R:A -> B249R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {B249R:U -> B226R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {B227R:G -> B247R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 5 {B247R:U -> B227R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 6 {B247R:U -> B248R:A: adjacent_5p } 0 7 {B248R:A -> B247R:U: adjacent_3p } 0 8 {B248R:A -> B249R:U: adjacent_5p } 0 9 {B249R:U -> B248R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:U 0 2 B5R:A 0 3 B6R:A 0 4 B7R:C 0 [Edges] 0 {A4R:G -> A5R:U: adjacent_5p upward } 0 1 {A5R:U -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B7R:C -> A4R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:U -> B5R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 5 {B5R:A -> A5R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 6 {A5R:U -> B6R:A: pairing antiparallel cis Ws/Ww } 0 7 {B6R:A -> A5R:U: pairing antiparallel cis Ww/Ws } 0 8 {B5R:A -> B6R:A: adjacent_5p upward } 0 9 {B6R:A -> B5R:A: adjacent_3p downward } 0 10 {B6R:A -> B7R:C: adjacent_5p upward } 0 11 {B7R:C -> B6R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 . 2 . 5 . 8 . 3 . 7 9 . 10 4 3 . . 11 . [GraphModel] [Vertices] 0 A5R:U 0 1 A6R:A 0 2 B4R:U 0 3 B5R:A 0 4 B6R:A 0 [Edges] 0 {A5R:U -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:U: adjacent_3p downward } 0 2 {A5R:U -> B5R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B5R:A -> A5R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A5R:U -> B6R:A: pairing antiparallel cis Ws/Ww } 0 5 {B6R:A -> A5R:U: pairing antiparallel cis Ww/Ws } 0 6 {A6R:A -> B4R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B4R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A6R:A -> B5R:A: outward } 0 9 {B5R:A -> A6R:A: outward } 0 10 {B4R:U -> B5R:A: adjacent_5p } 0 11 {B5R:A -> B4R:U: adjacent_3p } 0 12 {B5R:A -> B6R:A: adjacent_5p upward } 0 13 {B6R:A -> B5R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . 2 4 1 1 . 6 8 . 2 . 7 . 10 . 3 3 9 11 . 12 4 5 . . 13 . MOLECULE: [GraphModel] [Vertices] 0 B21R:G 0 1 B22R:A 0 2 B60R:U 0 3 B61R:U 0 4 B62R:A 0 [Edges] 0 {B21R:G -> B22R:A: adjacent_5p } 0 1 {B22R:A -> B21R:G: adjacent_3p } 0 2 {B21R:G -> B60R:U: inward } 0 3 {B60R:U -> B21R:G: inward } 0 4 {B21R:G -> B62R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {B62R:A -> B21R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {B22R:A -> B60R:U: pairing antiparallel trans XXIV Hh/Ww } 0 7 {B60R:U -> B22R:A: pairing antiparallel trans XXIV Ww/Hh } 0 8 {B22R:A -> B61R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 9 {B61R:U -> B22R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 10 {B22R:A -> B62R:A: outward } 0 11 {B62R:A -> B22R:A: outward } 0 12 {B60R:U -> B61R:U: adjacent_5p } 0 13 {B61R:U -> B60R:U: adjacent_3p } 0 14 {B61R:U -> B62R:A: adjacent_5p } 0 15 {B62R:A -> B61R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 2 . 4 1 1 . 6 8 10 2 3 7 . 12 . 3 . 9 13 . 14 4 5 11 . 15 . [GraphModel] [Vertices] 0 B22R:A 0 1 B23R:A 0 2 B59R:A 0 3 B60R:U 0 4 B61R:U 0 [Edges] 0 {B22R:A -> B23R:A: adjacent_5p upward } 0 1 {B23R:A -> B22R:A: adjacent_3p downward } 0 2 {B22R:A -> B60R:U: pairing antiparallel trans XXIV Hh/Ww } 0 3 {B60R:U -> B22R:A: pairing antiparallel trans XXIV Ww/Hh } 0 4 {B22R:A -> B61R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 5 {B61R:U -> B22R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 6 {B23R:A -> B59R:A: pairing antiparallel trans V Hh/Ww } 0 7 {B59R:A -> B23R:A: pairing antiparallel trans V Ww/Hh } 0 8 {B23R:A -> B61R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 9 {B61R:U -> B23R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 10 {B59R:A -> B60R:U: adjacent_5p upward } 0 11 {B60R:U -> B59R:A: adjacent_3p downward } 0 12 {B60R:U -> B61R:U: adjacent_5p } 0 13 {B61R:U -> B60R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . 2 4 1 1 . 6 . 8 2 . 7 . 10 . 3 3 . 11 . 12 4 5 9 . 13 . [GraphModel] [Vertices] 0 B23R:A 0 1 B24R:A 0 2 B57R:A 0 3 B58R:U 0 4 B59R:A 0 [Edges] 0 {B23R:A -> B24R:A: adjacent_5p upward } 0 1 {B24R:A -> B23R:A: adjacent_3p downward } 0 2 {B23R:A -> B59R:A: pairing antiparallel trans V Hh/Ww } 0 3 {B59R:A -> B23R:A: pairing antiparallel trans V Ww/Hh } 0 4 {B24R:A -> B57R:A: pairing antiparallel trans one_hbond Wh/Hh } 0 5 {B57R:A -> B24R:A: pairing antiparallel trans one_hbond Hh/Wh } 0 6 {B57R:A -> B58R:U: adjacent_5p } 0 7 {B58R:U -> B57R:A: adjacent_3p } 0 8 {B57R:A -> B59R:A: upward } 0 9 {B59R:A -> B57R:A: downward } 0 10 {B58R:U -> B59R:A: adjacent_5p } 0 11 {B59R:A -> B58R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 B61R:U 0 1 B62R:A 0 2 B21R:G 0 3 B22R:A 0 4 B23R:A 0 [Edges] 0 {B21R:G -> B22R:A: adjacent_5p } 0 1 {B22R:A -> B21R:G: adjacent_3p } 0 2 {B21R:G -> B62R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {B62R:A -> B21R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {B22R:A -> B23R:A: adjacent_5p upward } 0 5 {B23R:A -> B22R:A: adjacent_3p downward } 0 6 {B22R:A -> B61R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 7 {B61R:U -> B22R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 8 {B22R:A -> B62R:A: outward } 0 9 {B62R:A -> B22R:A: outward } 0 10 {B23R:A -> B61R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 11 {B61R:U -> B23R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 12 {B61R:U -> B62R:A: adjacent_5p } 0 13 {B62R:A -> B61R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 12 . 7 11 1 13 . 3 9 . 2 . 2 . 0 . 3 6 8 1 . 4 4 10 . . 5 . [GraphModel] [Vertices] 0 D11R:C 0 1 D12R:A 0 2 E9R:A 0 3 E10R:A 0 4 E11R:G 0 [Edges] 0 {D11R:C -> D12R:A: adjacent_5p } 0 1 {D12R:A -> D11R:C: adjacent_3p } 0 2 {D11R:C -> E11R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {E11R:G -> D11R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {D12R:A -> E9R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 5 {E9R:A -> D12R:A: pairing antiparallel trans one_hbond Hh/Ss } 0 6 {E9R:A -> E10R:A: adjacent_5p upward } 0 7 {E10R:A -> E9R:A: adjacent_3p downward } 0 8 {E10R:A -> E11R:G: adjacent_5p upward } 0 9 {E11R:G -> E10R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 E8R:G 0 1 E9R:A 0 2 D12R:A 0 3 D13R:G 0 4 D14R:U 0 [Edges] 0 {D12R:A -> D13R:G: adjacent_5p } 0 1 {D13R:G -> D12R:A: adjacent_3p } 0 2 {D12R:A -> E8R:G: inward } 0 3 {E8R:G -> D12R:A: inward } 0 4 {D12R:A -> E9R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 5 {E9R:A -> D12R:A: pairing antiparallel trans one_hbond Hh/Ss } 0 6 {D13R:G -> D14R:U: adjacent_5p } 0 7 {D14R:U -> D13R:G: adjacent_3p } 0 8 {D14R:U -> E8R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 9 {E8R:G -> D14R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 10 {D14R:U -> E9R:A: outward } 0 11 {E9R:A -> D14R:U: outward } 0 12 {E8R:G -> E9R:A: adjacent_5p } 0 13 {E9R:A -> E8R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 12 3 . 9 1 13 . 5 . 11 2 2 4 . 0 . 3 . . 1 . 6 4 8 10 . 7 . [GraphModel] [Vertices] 0 E21R:G 0 1 E22R:A 0 2 E60R:U 0 3 E61R:U 0 4 E62R:A 0 [Edges] 0 {E21R:G -> E22R:A: adjacent_5p } 0 1 {E22R:A -> E21R:G: adjacent_3p } 0 2 {E21R:G -> E60R:U: inward } 0 3 {E60R:U -> E21R:G: inward } 0 4 {E21R:G -> E62R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 5 {E62R:A -> E21R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 6 {E22R:A -> E60R:U: pairing antiparallel trans XXIV Hh/Ww } 0 7 {E60R:U -> E22R:A: pairing antiparallel trans XXIV Ww/Hh } 0 8 {E22R:A -> E61R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 9 {E61R:U -> E22R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 10 {E22R:A -> E62R:A: outward } 0 11 {E62R:A -> E22R:A: outward } 0 12 {E60R:U -> E61R:U: adjacent_5p } 0 13 {E61R:U -> E60R:U: adjacent_3p } 0 14 {E61R:U -> E62R:A: adjacent_5p } 0 15 {E62R:A -> E61R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 2 . 4 1 1 . 6 8 10 2 3 7 . 12 . 3 . 9 13 . 14 4 5 11 . 15 . [GraphModel] [Vertices] 0 E22R:A 0 1 E23R:A 0 2 E59R:A 0 3 E60R:U 0 4 E61R:U 0 [Edges] 0 {E22R:A -> E23R:A: adjacent_5p upward } 0 1 {E23R:A -> E22R:A: adjacent_3p downward } 0 2 {E22R:A -> E60R:U: pairing antiparallel trans XXIV Hh/Ww } 0 3 {E60R:U -> E22R:A: pairing antiparallel trans XXIV Ww/Hh } 0 4 {E22R:A -> E61R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 5 {E61R:U -> E22R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 6 {E23R:A -> E59R:A: pairing antiparallel trans V Hh/Ww } 0 7 {E59R:A -> E23R:A: pairing antiparallel trans V Ww/Hh } 0 8 {E23R:A -> E61R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {E61R:U -> E23R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {E59R:A -> E60R:U: adjacent_5p upward } 0 11 {E60R:U -> E59R:A: adjacent_3p downward } 0 12 {E60R:U -> E61R:U: adjacent_5p } 0 13 {E61R:U -> E60R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . 2 4 1 1 . 6 . 8 2 . 7 . 10 . 3 3 . 11 . 12 4 5 9 . 13 . [GraphModel] [Vertices] 0 E23R:A 0 1 E24R:A 0 2 E57R:A 0 3 E58R:U 0 4 E59R:A 0 [Edges] 0 {E23R:A -> E24R:A: adjacent_5p upward } 0 1 {E24R:A -> E23R:A: adjacent_3p downward } 0 2 {E23R:A -> E59R:A: pairing antiparallel trans V Hh/Ww } 0 3 {E59R:A -> E23R:A: pairing antiparallel trans V Ww/Hh } 0 4 {E24R:A -> E57R:A: pairing antiparallel trans one_hbond Wh/Hh } 0 5 {E57R:A -> E24R:A: pairing antiparallel trans one_hbond Hh/Wh } 0 6 {E57R:A -> E58R:U: adjacent_5p } 0 7 {E58R:U -> E57R:A: adjacent_3p } 0 8 {E57R:A -> E59R:A: upward } 0 9 {E59R:A -> E57R:A: downward } 0 10 {E58R:U -> E59R:A: adjacent_5p } 0 11 {E59R:A -> E58R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 E61R:U 0 1 E62R:A 0 2 E21R:G 0 3 E22R:A 0 4 E23R:A 0 [Edges] 0 {E21R:G -> E22R:A: adjacent_5p } 0 1 {E22R:A -> E21R:G: adjacent_3p } 0 2 {E21R:G -> E62R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 3 {E62R:A -> E21R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 4 {E22R:A -> E23R:A: adjacent_5p upward } 0 5 {E23R:A -> E22R:A: adjacent_3p downward } 0 6 {E22R:A -> E61R:U: pairing antiparallel trans one_hbond 46 Wh/Ws } 0 7 {E61R:U -> E22R:A: pairing antiparallel trans one_hbond 46 Ws/Wh } 0 8 {E22R:A -> E62R:A: outward } 0 9 {E62R:A -> E22R:A: outward } 0 10 {E23R:A -> E61R:U: pairing antiparallel cis XX Ww/Ww } 0 11 {E61R:U -> E23R:A: pairing antiparallel cis XX Ww/Ww } 0 12 {E61R:U -> E62R:A: adjacent_5p } 0 13 {E62R:A -> E61R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 12 . 7 11 1 13 . 3 9 . 2 . 2 . 0 . 3 6 8 1 . 4 4 10 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A13R:G 0 1 A14R:C 0 2 A26R:G 0 3 A27R:G 0 4 A28R:A 0 [Edges] 0 {A13R:G -> A14R:C: adjacent_5p upward } 0 1 {A14R:C -> A13R:G: adjacent_3p downward } 0 2 {A13R:G -> A26R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 3 {A26R:G -> A13R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 4 {A13R:G -> A28R:A: pairing antiparallel cis VIII Ww/Ww } 0 5 {A28R:A -> A13R:G: pairing antiparallel cis VIII Ww/Ww } 0 6 {A14R:C -> A26R:G: pairing antiparallel cis one_hbond 128 Ww/Bs } 0 7 {A26R:G -> A14R:C: pairing antiparallel cis one_hbond 128 Bs/Ww } 0 8 {A26R:G -> A27R:G: adjacent_5p } 0 9 {A27R:G -> A26R:G: adjacent_3p } 0 10 {A27R:G -> A28R:A: adjacent_5p } 0 11 {A28R:A -> A27R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 2 . 4 1 1 . 6 . . 2 3 7 . 8 . 3 . . 9 . 10 4 5 . . 11 . [GraphModel] [Vertices] 0 A14R:C 0 1 A15R:U 0 2 A24R:A 0 3 A25R:G 0 4 A26R:G 0 [Edges] 0 {A14R:C -> A15R:U: adjacent_5p } 0 1 {A15R:U -> A14R:C: adjacent_3p } 0 2 {A14R:C -> A25R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A25R:G -> A14R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A14R:C -> A26R:G: pairing antiparallel cis one_hbond 128 Ww/Bs } 0 5 {A26R:G -> A14R:C: pairing antiparallel cis one_hbond 128 Bs/Ww } 0 6 {A15R:U -> A24R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A24R:A -> A15R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A15R:U -> A25R:G: outward } 0 9 {A25R:G -> A15R:U: outward } 0 10 {A24R:A -> A25R:G: adjacent_5p upward } 0 11 {A25R:G -> A24R:A: adjacent_3p downward } 0 12 {A25R:G -> A26R:G: adjacent_5p upward } 0 13 {A26R:G -> A25R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . 2 4 1 1 . 6 8 . 2 . 7 . 10 . 3 3 9 11 . 12 4 5 . . 13 . [GraphModel] [Vertices] 0 A33R:G 0 1 A34R:G 0 2 A6R:G 0 3 A7R:G 0 4 A8R:A 0 [Edges] 0 {A6R:G -> A7R:G: adjacent_5p } 0 1 {A7R:G -> A6R:G: adjacent_3p } 0 2 {A6R:G -> A8R:A: outward } 0 3 {A8R:A -> A6R:G: outward } 0 4 {A6R:G -> A34R:G: pairing parallel trans III Ww/Ww } 0 5 {A34R:G -> A6R:G: pairing parallel trans III Ww/Ww } 0 6 {A7R:G -> A8R:A: adjacent_5p } 0 7 {A8R:A -> A7R:G: adjacent_3p } 0 8 {A8R:A -> A33R:G: pairing antiparallel cis VIII Ww/Ww } 0 9 {A33R:G -> A8R:A: pairing antiparallel cis VIII Ww/Ww } 0 10 {A33R:G -> A34R:G: adjacent_5p upward } 0 11 {A34R:G -> A33R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 A34R:G 0 1 A35R:G 0 2 A4R:C 0 3 A5R:A 0 4 A6R:G 0 [Edges] 0 {A4R:C -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> A35R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A35R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> A6R:G: adjacent_5p inward } 0 5 {A6R:G -> A5R:A: adjacent_3p inward } 0 6 {A6R:G -> A34R:G: pairing parallel trans III Ww/Ww } 0 7 {A34R:G -> A6R:G: pairing parallel trans III Ww/Ww } 0 8 {A34R:G -> A35R:G: adjacent_5p } 0 9 {A35R:G -> A34R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A7R:A 0 1 A8R:G 0 2 A17R:C 0 3 A18R:U 0 4 A19R:U 0 [Edges] 0 {A7R:A -> A8R:G: adjacent_5p upward } 0 1 {A8R:G -> A7R:A: adjacent_3p downward } 0 2 {A7R:A -> A19R:U: pairing antiparallel cis one_hbond Bs/Wh } 0 3 {A19R:U -> A7R:A: pairing antiparallel cis one_hbond Wh/Bs } 0 4 {A8R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A17R:C -> A18R:U: adjacent_5p upward } 0 7 {A18R:U -> A17R:C: adjacent_3p downward } 0 8 {A18R:U -> A19R:U: adjacent_5p } 0 9 {A19R:U -> A18R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A14R:G 0 1 A15R:A 0 2 A8R:U 0 3 A9R:C 0 4 A10R:U 0 [Edges] 0 {A8R:U -> A9R:C: adjacent_5p } 0 1 {A9R:C -> A8R:U: adjacent_3p } 0 2 {A8R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A15R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A9R:C -> A10R:U: adjacent_5p upward } 0 5 {A10R:U -> A9R:C: adjacent_3p downward } 0 6 {A9R:C -> A14R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A14R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A10R:U -> A14R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 9 {A14R:G -> A10R:U: pairing antiparallel cis one_hbond Wh/Ww } 0 10 {A14R:G -> A15R:A: adjacent_5p upward } 0 11 {A15R:A -> A14R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . 7 9 1 11 . 3 . . 2 . 2 . 0 . 3 6 . 1 . 4 4 8 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A17R:C 0 1 A18R:A 0 2 A6R:U 0 3 A7R:U 0 4 A8R:G 0 [Edges] 0 {A6R:U -> A7R:U: adjacent_5p } 0 1 {A7R:U -> A6R:U: adjacent_3p } 0 2 {A6R:U -> A18R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A18R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:U -> A8R:G: adjacent_5p } 0 5 {A8R:G -> A7R:U: adjacent_3p } 0 6 {A8R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A17R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A8R:G -> A18R:A: outward } 0 9 {A18R:A -> A8R:G: outward } 0 10 {A17R:C -> A18R:A: adjacent_5p upward } 0 11 {A18R:A -> A17R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 7 1 11 . 3 . 9 2 . 2 . 0 . 3 . . 1 . 4 4 6 8 . 5 . MOLECULE: [GraphModel] [Vertices] 0 A28R:C 0 1 A29R:G 0 2 A3R:U 0 3 A4R:A 0 4 A5R:G 0 [Edges] 0 {A3R:U -> A4R:A: adjacent_5p } 0 1 {A4R:A -> A3R:U: adjacent_3p } 0 2 {A3R:U -> A29R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A29R:G -> A3R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A4R:A -> A5R:G: adjacent_5p upward } 0 5 {A5R:G -> A4R:A: adjacent_3p downward } 0 6 {A5R:G -> A28R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A28R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A28R:C -> A29R:G: adjacent_5p } 0 9 {A29R:G -> A28R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 C514R:A 0 1 C515R:G 0 2 C520R:U 0 3 C520.AR:U 0 4 C521R:A 0 [Edges] 0 {C514R:A -> C515R:G: adjacent_5p upward } 0 1 {C515R:G -> C514R:A: adjacent_3p downward } 0 2 {C514R:A -> C521R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 3 {C521R:A -> C514R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 4 {C515R:G -> C520R:U: pairing antiparallel cis one_hbond Sw/Wh } 0 5 {C520R:U -> C515R:G: pairing antiparallel cis one_hbond Wh/Sw } 0 6 {C520R:U -> C520.AR:U: adjacent_5p } 0 7 {C520.AR:U -> C520R:U: adjacent_3p } 0 8 {C520.AR:U -> C521R:A: adjacent_5p } 0 9 {C521R:A -> C520.AR:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 D514R:A 0 1 D515R:G 0 2 D520R:U 0 3 D520.AR:U 0 4 D521R:A 0 [Edges] 0 {D514R:A -> D515R:G: adjacent_5p upward } 0 1 {D515R:G -> D514R:A: adjacent_3p downward } 0 2 {D514R:A -> D521R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 3 {D521R:A -> D514R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 4 {D515R:G -> D520R:U: pairing antiparallel cis one_hbond Sw/Wh } 0 5 {D520R:U -> D515R:G: pairing antiparallel cis one_hbond Wh/Sw } 0 6 {D520R:U -> D520.AR:U: adjacent_5p } 0 7 {D520.AR:U -> D520R:U: adjacent_3p } 0 8 {D520.AR:U -> D521R:A: adjacent_5p } 0 9 {D521R:A -> D520.AR:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A12R:A 0 1 A13R:C 0 2 A17R:G 0 3 A18R:C 0 4 A19R:U 0 [Edges] 0 {A12R:A -> A13R:C: adjacent_5p upward } 0 1 {A13R:C -> A12R:A: adjacent_3p downward } 0 2 {A12R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A19R:U -> A12R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A13R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A17R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A17R:G -> A18R:C: adjacent_5p } 0 7 {A18R:C -> A17R:G: adjacent_3p } 0 8 {A17R:G -> A19R:U: upward } 0 9 {A19R:U -> A17R:G: downward } 0 10 {A18R:C -> A19R:U: adjacent_5p } 0 11 {A19R:U -> A18R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A23R:A 0 1 A24R:C 0 2 A6R:G 0 3 A7R:C 0 4 A8R:U 0 [Edges] 0 {A6R:G -> A7R:C: adjacent_5p } 0 1 {A7R:C -> A6R:G: adjacent_3p } 0 2 {A6R:G -> A24R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:C -> A8R:U: adjacent_5p } 0 5 {A8R:U -> A7R:C: adjacent_3p } 0 6 {A8R:U -> A23R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A23R:A -> A8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A23R:A -> A24R:C: adjacent_5p upward } 0 9 {A24R:C -> A23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A6R:C 0 1 A7R:C 0 2 A17R:G 0 3 A18R:A 0 4 A19R:G 0 [Edges] 0 {A6R:C -> A7R:C: adjacent_5p } 0 1 {A7R:C -> A6R:C: adjacent_3p } 0 2 {A6R:C -> A19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A19R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A17R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A17R:G -> A18R:A: adjacent_5p upward } 0 7 {A18R:A -> A17R:G: adjacent_3p downward } 0 8 {A18R:A -> A19R:G: adjacent_5p upward } 0 9 {A19R:G -> A18R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 B114R:G 0 1 B115R:G 0 2 A5R:C 0 3 A6R:G 0 4 A7R:C 0 [Edges] 0 {A5R:C -> A6R:G: adjacent_5p } 0 1 {A6R:G -> A5R:C: adjacent_3p } 0 2 {A5R:C -> B115R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B115R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:G -> A7R:C: adjacent_5p downward } 0 5 {A7R:C -> A6R:G: adjacent_3p upward } 0 6 {A7R:C -> B114R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {B114R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A7R:C -> B115R:G: outward } 0 9 {B115R:G -> A7R:C: outward } 0 10 {B114R:G -> B115R:G: adjacent_5p upward } 0 11 {B115R:G -> B114R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 7 1 11 . 3 . 9 2 . 2 . 0 . 3 . . 1 . 4 4 6 8 . 5 . MOLECULE: [GraphModel] [Vertices] 0 A19R:U 0 1 A20R:C 0 2 A41R:G 0 3 A42R:U 0 4 A43R:G 0 [Edges] 0 {A19R:U -> A20R:C: adjacent_5p } 0 1 {A20R:C -> A19R:U: adjacent_3p } 0 2 {A19R:U -> A43R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A43R:G -> A19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A20R:C -> A41R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A41R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A41R:G -> A42R:U: adjacent_5p } 0 7 {A42R:U -> A41R:G: adjacent_3p } 0 8 {A41R:G -> A43R:G: upward } 0 9 {A43R:G -> A41R:G: downward } 0 10 {A42R:U -> A43R:G: adjacent_5p } 0 11 {A43R:G -> A42R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A50R:C 0 1 A51R:C 0 2 A5R:G 0 3 A6R:U 0 4 A7R:G 0 [Edges] 0 {A5R:G -> A6R:U: adjacent_5p } 0 1 {A6R:U -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A7R:G: upward } 0 3 {A7R:G -> A5R:G: downward } 0 4 {A5R:G -> A51R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A51R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A6R:U -> A7R:G: adjacent_5p } 0 7 {A7R:G -> A6R:U: adjacent_3p } 0 8 {A7R:G -> A50R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A50R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A50R:C -> A51R:C: adjacent_5p upward } 0 11 {A51R:C -> A50R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 A6R:A 0 1 A7R:A 0 2 A27R:A 0 3 A28R:G 0 4 A29R:U 0 [Edges] 0 {A6R:A -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:A: adjacent_3p downward } 0 2 {A6R:A -> A29R:U: pairing antiparallel trans XXIV Hh/Ww } 0 3 {A29R:U -> A6R:A: pairing antiparallel trans XXIV Ww/Hh } 0 4 {A7R:A -> A27R:A: pairing parallel trans II Hh/Hh } 0 5 {A27R:A -> A7R:A: pairing parallel trans II Hh/Hh } 0 6 {A27R:A -> A28R:G: adjacent_5p } 0 7 {A28R:G -> A27R:A: adjacent_3p } 0 8 {A27R:A -> A29R:U: outward } 0 9 {A29R:U -> A27R:A: outward } 0 10 {A28R:G -> A29R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {A29R:U -> A28R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . MOLECULE: [GraphModel] [Vertices] 0 A8R:A 0 1 A9R:G 0 2 A69R:C 0 3 A70R:C 0 4 A71R:U 0 [Edges] 0 {A8R:A -> A9R:G: adjacent_5p upward } 0 1 {A9R:G -> A8R:A: adjacent_3p downward } 0 2 {A8R:A -> A71R:U: pairing antiparallel cis Ww/Ws } 0 3 {A71R:U -> A8R:A: pairing antiparallel cis Ws/Ww } 0 4 {A9R:G -> A69R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 5 {A69R:C -> A9R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 6 {A9R:G -> A70R:C: pairing antiparallel cis Ww/Ww } 0 7 {A70R:C -> A9R:G: pairing antiparallel cis Ww/Ww } 0 8 {A69R:C -> A70R:C: adjacent_5p upward } 0 9 {A70R:C -> A69R:C: adjacent_3p downward } 0 10 {A70R:C -> A71R:U: adjacent_5p upward } 0 11 {A71R:U -> A70R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 . 2 . 5 . 8 . 3 . 7 9 . 10 4 3 . . 11 . [GraphModel] [Vertices] 0 A19R:U 0 1 A20R:C 0 2 A63R:G 0 3 A64R:U 0 4 A65R:G 0 [Edges] 0 {A19R:U -> A20R:C: adjacent_5p } 0 1 {A20R:C -> A19R:U: adjacent_3p } 0 2 {A19R:U -> A65R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A65R:G -> A19R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A20R:C -> A63R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A63R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A63R:G -> A64R:U: adjacent_5p } 0 7 {A64R:U -> A63R:G: adjacent_3p } 0 8 {A63R:G -> A65R:G: upward } 0 9 {A65R:G -> A63R:G: downward } 0 10 {A64R:U -> A65R:G: adjacent_5p } 0 11 {A65R:G -> A64R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A30R:A 0 1 A31R:A 0 2 A51R:A 0 3 A52R:G 0 4 A53R:U 0 [Edges] 0 {A30R:A -> A31R:A: adjacent_5p upward } 0 1 {A31R:A -> A30R:A: adjacent_3p downward } 0 2 {A30R:A -> A53R:U: pairing antiparallel trans XXIV Hh/Ww } 0 3 {A53R:U -> A30R:A: pairing antiparallel trans XXIV Ww/Hh } 0 4 {A31R:A -> A51R:A: pairing parallel trans II Hh/Hh } 0 5 {A51R:A -> A31R:A: pairing parallel trans II Hh/Hh } 0 6 {A51R:A -> A52R:G: adjacent_5p } 0 7 {A52R:G -> A51R:A: adjacent_3p } 0 8 {A51R:A -> A53R:U: outward } 0 9 {A53R:U -> A51R:A: outward } 0 10 {A52R:G -> A53R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {A53R:U -> A52R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A72R:C 0 1 A73R:C 0 2 A5R:G 0 3 A6R:U 0 4 A7R:G 0 [Edges] 0 {A5R:G -> A6R:U: adjacent_5p } 0 1 {A6R:U -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A7R:G: upward } 0 3 {A7R:G -> A5R:G: downward } 0 4 {A5R:G -> A73R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A73R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A6R:U -> A7R:G: adjacent_5p } 0 7 {A7R:G -> A6R:U: adjacent_3p } 0 8 {A7R:G -> A72R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A72R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A72R:C -> A73R:C: adjacent_5p upward } 0 11 {A73R:C -> A72R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:U 0 2 A9R:G 0 3 A10R:U 0 4 A11R:G 0 [Edges] 0 {A5R:C -> A6R:U: adjacent_5p } 0 1 {A6R:U -> A5R:C: adjacent_3p } 0 2 {A5R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A11R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:U -> A9R:G: pairing parallel trans 87 Bs/Ww } 0 5 {A9R:G -> A6R:U: pairing parallel trans 87 Ww/Bs } 0 6 {A9R:G -> A10R:U: adjacent_5p } 0 7 {A10R:U -> A9R:G: adjacent_3p } 0 8 {A10R:U -> A11R:G: adjacent_5p } 0 9 {A11R:G -> A10R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A20R:A 0 1 A21R:A 0 2 A9R:A 0 3 A10R:G 0 4 A11R:U 0 [Edges] 0 {A9R:A -> A10R:G: adjacent_5p } 0 1 {A10R:G -> A9R:A: adjacent_3p } 0 2 {A9R:A -> A11R:U: outward } 0 3 {A11R:U -> A9R:A: outward } 0 4 {A9R:A -> A21R:A: pairing parallel trans II Hh/Hh } 0 5 {A21R:A -> A9R:A: pairing parallel trans II Hh/Hh } 0 6 {A10R:G -> A11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {A11R:U -> A10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {A11R:U -> A20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 9 {A20R:A -> A11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 10 {A20R:A -> A21R:A: adjacent_5p upward } 0 11 {A21R:A -> A20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 B20R:A 0 1 B21R:A 0 2 B9R:A 0 3 B10R:G 0 4 B11R:U 0 [Edges] 0 {B9R:A -> B10R:G: adjacent_5p } 0 1 {B10R:G -> B9R:A: adjacent_3p } 0 2 {B9R:A -> B11R:U: outward } 0 3 {B11R:U -> B9R:A: outward } 0 4 {B9R:A -> B21R:A: pairing parallel trans II Hh/Hh } 0 5 {B21R:A -> B9R:A: pairing parallel trans II Hh/Hh } 0 6 {B10R:G -> B11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {B11R:U -> B10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {B11R:U -> B20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 9 {B20R:A -> B11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 10 {B20R:A -> B21R:A: adjacent_5p upward } 0 11 {B21R:A -> B20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 C20R:A 0 1 C21R:A 0 2 C9R:A 0 3 C10R:G 0 4 C11R:U 0 [Edges] 0 {C9R:A -> C10R:G: adjacent_5p } 0 1 {C10R:G -> C9R:A: adjacent_3p } 0 2 {C9R:A -> C11R:U: outward } 0 3 {C11R:U -> C9R:A: outward } 0 4 {C9R:A -> C21R:A: pairing parallel trans II Hh/Hh } 0 5 {C21R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 6 {C10R:G -> C11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {C11R:U -> C10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {C11R:U -> C20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 9 {C20R:A -> C11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 10 {C20R:A -> C21R:A: adjacent_5p upward } 0 11 {C21R:A -> C20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 A20R:A 0 1 A21R:A 0 2 A9R:A 0 3 A10R:G 0 4 A11R:U 0 [Edges] 0 {A9R:A -> A10R:G: adjacent_5p } 0 1 {A10R:G -> A9R:A: adjacent_3p } 0 2 {A9R:A -> A11R:U: outward } 0 3 {A11R:U -> A9R:A: outward } 0 4 {A9R:A -> A21R:A: pairing parallel trans II Hh/Hh } 0 5 {A21R:A -> A9R:A: pairing parallel trans II Hh/Hh } 0 6 {A10R:G -> A11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {A11R:U -> A10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {A11R:U -> A20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 9 {A20R:A -> A11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 10 {A20R:A -> A21R:A: adjacent_5p upward } 0 11 {A21R:A -> A20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 B20R:A 0 1 B21R:A 0 2 B9R:A 0 3 B10R:G 0 4 B11R:U 0 [Edges] 0 {B9R:A -> B10R:G: adjacent_5p } 0 1 {B10R:G -> B9R:A: adjacent_3p } 0 2 {B9R:A -> B11R:U: outward } 0 3 {B11R:U -> B9R:A: outward } 0 4 {B9R:A -> B21R:A: pairing parallel trans II Hh/Hh } 0 5 {B21R:A -> B9R:A: pairing parallel trans II Hh/Hh } 0 6 {B10R:G -> B11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {B11R:U -> B10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {B11R:U -> B20R:A: pairing antiparallel trans XXIV Ww/Hh } 0 9 {B20R:A -> B11R:U: pairing antiparallel trans XXIV Hh/Ww } 0 10 {B20R:A -> B21R:A: adjacent_5p upward } 0 11 {B21R:A -> B20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 C20R:A 0 1 C21R:A 0 2 C9R:A 0 3 C10R:G 0 4 C11R:U 0 [Edges] 0 {C9R:A -> C10R:G: adjacent_5p } 0 1 {C10R:G -> C9R:A: adjacent_3p } 0 2 {C9R:A -> C11R:U: outward } 0 3 {C11R:U -> C9R:A: outward } 0 4 {C9R:A -> C21R:A: pairing parallel trans II Hh/Hh } 0 5 {C21R:A -> C9R:A: pairing parallel trans II Hh/Hh } 0 6 {C10R:G -> C11R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {C11R:U -> C10R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {C11R:U -> C20R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {C20R:A -> C11R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {C20R:A -> C21R:A: adjacent_5p upward } 0 11 {C21R:A -> C20R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 A22R:C 0 1 A23R:G 0 2 A3R:C 0 3 A4R:A 0 4 A5R:G 0 [Edges] 0 {A3R:C -> A4R:A: adjacent_5p upward } 0 1 {A4R:A -> A3R:C: adjacent_3p downward } 0 2 {A3R:C -> A23R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:A -> A5R:G: adjacent_5p } 0 5 {A5R:G -> A4R:A: adjacent_3p } 0 6 {A5R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A22R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A22R:C -> A23R:G: adjacent_5p } 0 9 {A23R:G -> A22R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 T32R:C 0 1 T33R:U 0 2 T36R:U 0 3 T37R:A 0 4 T38R:A 0 [Edges] 0 {T32R:C -> T33R:U: adjacent_5p upward } 0 1 {T33R:U -> T32R:C: adjacent_3p downward } 0 2 {T32R:C -> T38R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 3 {T38R:A -> T32R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 4 {T33R:U -> T36R:U: pairing parallel trans one_hbond Ss/Ww } 0 5 {T36R:U -> T33R:U: pairing parallel trans one_hbond Ww/Ss } 0 6 {T36R:U -> T37R:A: adjacent_5p } 0 7 {T37R:A -> T36R:U: adjacent_3p } 0 8 {T36R:U -> T38R:A: outward } 0 9 {T38R:A -> T36R:U: outward } 0 10 {T37R:A -> T38R:A: adjacent_5p } 0 11 {T38R:A -> T37R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . MOLECULE: [GraphModel] [Vertices] 0 A8R:A 0 1 A9R:A 0 2 A17R:A 0 3 A18R:G 0 4 A19R:U 0 [Edges] 0 {A8R:A -> A9R:A: adjacent_5p upward } 0 1 {A9R:A -> A8R:A: adjacent_3p downward } 0 2 {A8R:A -> A19R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {A19R:U -> A8R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {A9R:A -> A17R:A: pairing parallel trans 35 Hh/Hh } 0 5 {A17R:A -> A9R:A: pairing parallel trans 35 Hh/Hh } 0 6 {A17R:A -> A18R:G: adjacent_5p } 0 7 {A18R:G -> A17R:A: adjacent_3p } 0 8 {A17R:A -> A19R:U: outward } 0 9 {A19R:U -> A17R:A: outward } 0 10 {A18R:G -> A19R:U: adjacent_5p pairing parallel cis 89 Ss/Hh } 0 11 {A19R:U -> A18R:G: adjacent_3p pairing parallel cis 89 Hh/Ss } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . MOLECULE: [GraphModel] [Vertices] 0 A7R:U 0 1 A8R:A 0 2 A26R:G 0 3 A27R:U 0 4 A28R:A 0 [Edges] 0 {A7R:U -> A8R:A: adjacent_5p } 0 1 {A8R:A -> A7R:U: adjacent_3p } 0 2 {A7R:U -> A28R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A28R:A -> A7R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A8R:A -> A26R:G: pairing parallel trans one_hbond Hh/C8 } 0 5 {A26R:G -> A8R:A: pairing parallel trans one_hbond C8/Hh } 0 6 {A8R:A -> A27R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {A27R:U -> A8R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {A8R:A -> A28R:A: outward } 0 9 {A28R:A -> A8R:A: outward } 0 10 {A26R:G -> A27R:U: adjacent_5p } 0 11 {A27R:U -> A26R:G: adjacent_3p } 0 12 {A27R:U -> A28R:A: adjacent_5p } 0 13 {A28R:A -> A27R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 8 2 . 5 . 10 . 3 . 7 11 . 12 4 3 9 . 13 . MOLECULE: [GraphModel] [Vertices] 0 B6R:C 0 1 B7R:C 0 2 B14R:G 0 3 B15R:U 0 4 B16R:G 0 [Edges] 0 {B6R:C -> B7R:C: adjacent_5p upward } 0 1 {B7R:C -> B6R:C: adjacent_3p downward } 0 2 {B6R:C -> B16R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B16R:G -> B6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {B7R:C -> B14R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {B14R:G -> B7R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {B14R:G -> B15R:U: adjacent_5p } 0 7 {B15R:U -> B14R:G: adjacent_3p } 0 8 {B15R:U -> B16R:G: adjacent_5p } 0 9 {B16R:G -> B15R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A16R:U 0 1 A17R:G 0 2 A34R:C 0 3 A35R:A 0 4 A36R:A 0 [Edges] 0 {A16R:U -> A17R:G: adjacent_5p upward } 0 1 {A17R:G -> A16R:U: adjacent_3p downward } 0 2 {A16R:U -> A36R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A36R:A -> A16R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A17R:G -> A34R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A34R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A34R:C -> A35R:A: adjacent_5p upward } 0 7 {A35R:A -> A34R:C: adjacent_3p downward } 0 8 {A35R:A -> A36R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 9 {A36R:A -> A35R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 A39R:C 0 1 A40R:C 0 2 A9R:G 0 3 A10R:C 0 4 A11R:G 0 [Edges] 0 {A9R:G -> A10R:C: adjacent_5p } 0 1 {A10R:C -> A9R:G: adjacent_3p } 0 2 {A9R:G -> A11R:G: upward } 0 3 {A11R:G -> A9R:G: downward } 0 4 {A9R:G -> A40R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A40R:C -> A9R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A10R:C -> A11R:G: adjacent_5p } 0 7 {A11R:G -> A10R:C: adjacent_3p } 0 8 {A11R:G -> A39R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A39R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A39R:C -> A40R:C: adjacent_5p } 0 11 {A40R:C -> A39R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 A41R:C 0 1 A42R:U 0 2 A6R:A 0 3 A7R:U 0 4 A8R:G 0 [Edges] 0 {A6R:A -> A7R:U: adjacent_5p } 0 1 {A7R:U -> A6R:A: adjacent_3p } 0 2 {A6R:A -> A8R:G: upward } 0 3 {A8R:G -> A6R:A: downward } 0 4 {A6R:A -> A42R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {A42R:U -> A6R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {A7R:U -> A8R:G: adjacent_5p } 0 7 {A8R:G -> A7R:U: adjacent_3p } 0 8 {A8R:G -> A41R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A41R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A41R:C -> A42R:U: adjacent_5p } 0 11 {A42R:U -> A41R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 B16R:U 0 1 B17R:G 0 2 B34R:C 0 3 B35R:A 0 4 B36R:A 0 [Edges] 0 {B16R:U -> B17R:G: adjacent_5p upward } 0 1 {B17R:G -> B16R:U: adjacent_3p downward } 0 2 {B16R:U -> B36R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B36R:A -> B16R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B17R:G -> B34R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {B34R:C -> B17R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {B34R:C -> B35R:A: adjacent_5p upward } 0 7 {B35R:A -> B34R:C: adjacent_3p downward } 0 8 {B35R:A -> B36R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 9 {B36R:A -> B35R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 B39R:C 0 1 B40R:C 0 2 B9R:G 0 3 B10R:C 0 4 B11R:G 0 [Edges] 0 {B9R:G -> B10R:C: adjacent_5p } 0 1 {B10R:C -> B9R:G: adjacent_3p } 0 2 {B9R:G -> B11R:G: upward } 0 3 {B11R:G -> B9R:G: downward } 0 4 {B9R:G -> B40R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {B40R:C -> B9R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {B10R:C -> B11R:G: adjacent_5p } 0 7 {B11R:G -> B10R:C: adjacent_3p } 0 8 {B11R:G -> B39R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B39R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B39R:C -> B40R:C: adjacent_5p upward } 0 11 {B40R:C -> B39R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 B41R:C 0 1 B42R:U 0 2 B6R:A 0 3 B7R:U 0 4 B8R:G 0 [Edges] 0 {B6R:A -> B7R:U: adjacent_5p } 0 1 {B7R:U -> B6R:A: adjacent_3p } 0 2 {B6R:A -> B8R:G: upward } 0 3 {B8R:G -> B6R:A: downward } 0 4 {B6R:A -> B42R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {B42R:U -> B6R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {B7R:U -> B8R:G: adjacent_5p } 0 7 {B8R:G -> B7R:U: adjacent_3p } 0 8 {B8R:G -> B41R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B41R:C -> B8R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B41R:C -> B42R:U: adjacent_5p } 0 11 {B42R:U -> B41R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 A923R:C 0 1 A924R:C 0 2 A912R:G 0 3 A913R:U 0 4 A914R:G 0 [Edges] 0 {A912R:G -> A913R:U: adjacent_5p } 0 1 {A913R:U -> A912R:G: adjacent_3p } 0 2 {A912R:G -> A924R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A924R:C -> A912R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A913R:U -> A914R:G: adjacent_5p upward } 0 5 {A914R:G -> A913R:U: adjacent_3p downward } 0 6 {A914R:G -> A923R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A923R:C -> A914R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A923R:C -> A924R:C: adjacent_5p upward } 0 9 {A924R:C -> A923R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 12R:C 0 1 13R:C 0 2 20R:G 0 3 21R:A 0 4 22R:G 0 [Edges] 0 {12R:C -> 13R:C: adjacent_5p upward } 0 1 {13R:C -> 12R:C: adjacent_3p downward } 0 2 {12R:C -> 22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {22R:G -> 12R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {13R:C -> 20R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {20R:G -> 13R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {20R:G -> 21R:A: adjacent_5p } 0 7 {21R:A -> 20R:G: adjacent_3p } 0 8 {21R:A -> 22R:G: adjacent_5p } 0 9 {22R:G -> 21R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A5R:C 0 1 A6R:C 0 2 A18R:A 0 3 A19R:U 0 4 A20R:G 0 [Edges] 0 {A5R:C -> A6R:C: adjacent_5p upward } 0 1 {A6R:C -> A5R:C: adjacent_3p downward } 0 2 {A5R:C -> A20R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A20R:G -> A5R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:C -> A18R:A: pairing antiparallel cis 78 Ww/Bh } 0 5 {A18R:A -> A6R:C: pairing antiparallel cis 78 Bh/Ww } 0 6 {A18R:A -> A19R:U: adjacent_5p } 0 7 {A19R:U -> A18R:A: adjacent_3p } 0 8 {A18R:A -> A20R:G: upward } 0 9 {A20R:G -> A18R:A: downward } 0 10 {A19R:U -> A20R:G: adjacent_5p } 0 11 {A20R:G -> A19R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . MOLECULE: [GraphModel] [Vertices] 0 8R:G 0 1 9R:G 0 2 18R:C 0 3 19R:A 0 4 20R:C 0 [Edges] 0 {8R:G -> 9R:G: adjacent_5p } 0 1 {9R:G -> 8R:G: adjacent_3p } 0 2 {8R:G -> 20R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {20R:C -> 8R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {9R:G -> 18R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {18R:C -> 9R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {18R:C -> 19R:A: adjacent_5p } 0 7 {19R:A -> 18R:C: adjacent_3p } 0 8 {19R:A -> 20R:C: adjacent_5p downward } 0 9 {20R:C -> 19R:A: adjacent_3p upward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A45R:U 0 1 A46R:A 0 2 A8R:U 0 3 A9R:A 0 4 A10R:A 0 [Edges] 0 {A8R:U -> A9R:A: adjacent_5p } 0 1 {A9R:A -> A8R:U: adjacent_3p } 0 2 {A8R:U -> A46R:A: pairing antiparallel cis one_hbond Ss/Bs } 0 3 {A46R:A -> A8R:U: pairing antiparallel cis one_hbond Bs/Ss } 0 4 {A9R:A -> A10R:A: adjacent_5p } 0 5 {A10R:A -> A9R:A: adjacent_3p } 0 6 {A9R:A -> A46R:A: outward } 0 7 {A46R:A -> A9R:A: outward } 0 8 {A10R:A -> A45R:U: pairing parallel cis XXIII Hh/Ww } 0 9 {A45R:U -> A10R:A: pairing parallel cis XXIII Ww/Hh } 0 10 {A45R:U -> A46R:A: adjacent_5p } 0 11 {A46R:A -> A45R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 B324R:G 0 1 B325R:A 0 2 B335R:U 0 3 B336R:U 0 4 B337R:C 0 [Edges] 0 {B324R:G -> B325R:A: adjacent_5p upward } 0 1 {B325R:A -> B324R:G: adjacent_3p downward } 0 2 {B324R:G -> B337R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B337R:C -> B324R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B325R:A -> B335R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 5 {B335R:U -> B325R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 6 {B325R:A -> B336R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B336R:U -> B325R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B335R:U -> B336R:U: adjacent_5p upward } 0 9 {B336R:U -> B335R:U: adjacent_3p downward } 0 10 {B336R:U -> B337R:C: adjacent_5p upward } 0 11 {B337R:C -> B336R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 . 2 . 5 . 8 . 3 . 7 9 . 10 4 3 . . 11 . [GraphModel] [Vertices] 0 B334R:G 0 1 B335R:U 0 2 B325R:A 0 3 B326R:A 0 4 B327R:C 0 [Edges] 0 {B325R:A -> B326R:A: adjacent_5p upward } 0 1 {B326R:A -> B325R:A: adjacent_3p downward } 0 2 {B325R:A -> B335R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {B335R:U -> B325R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {B326R:A -> B327R:C: adjacent_5p upward } 0 5 {B327R:C -> B326R:A: adjacent_3p downward } 0 6 {B326R:A -> B335R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B335R:U -> B326R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {B327R:C -> B334R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {B334R:G -> B327R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {B334R:G -> B335R:U: adjacent_5p upward } 0 11 {B335R:U -> B334R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 B345R:C 0 1 B346R:C 0 2 B318R:G 0 3 B319R:U 0 4 B320R:G 0 [Edges] 0 {B318R:G -> B319R:U: adjacent_5p } 0 1 {B319R:U -> B318R:G: adjacent_3p } 0 2 {B318R:G -> B346R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B346R:C -> B318R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B319R:U -> B320R:G: adjacent_5p } 0 5 {B320R:G -> B319R:U: adjacent_3p } 0 6 {B320R:G -> B345R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B345R:C -> B320R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B320R:G -> B346R:C: outward } 0 9 {B346R:C -> B320R:G: outward } 0 10 {B345R:C -> B346R:C: adjacent_5p } 0 11 {B346R:C -> B345R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 7 1 11 . 3 . 9 2 . 2 . 0 . 3 . . 1 . 4 4 6 8 . 5 . MOLECULE: [GraphModel] [Vertices] 0 A45R:A 0 1 A46R:G 0 2 A23R:A 0 3 A24R:A 0 4 A25R:U 0 [Edges] 0 {A23R:A -> A24R:A: adjacent_5p } 0 1 {A24R:A -> A23R:A: adjacent_3p } 0 2 {A23R:A -> A46R:G: pairing parallel trans X Ww/Ss } 0 3 {A46R:G -> A23R:A: pairing parallel trans X Ss/Ww } 0 4 {A24R:A -> A25R:U: adjacent_5p } 0 5 {A25R:U -> A24R:A: adjacent_3p } 0 6 {A25R:U -> A45R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {A45R:A -> A25R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {A45R:A -> A46R:G: adjacent_5p upward } 0 9 {A46R:G -> A45R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 A46R:G 0 1 A47R:U 0 2 A51R:U 0 3 A52R:A 0 4 A53R:C 0 [Edges] 0 {A46R:G -> A47R:U: adjacent_5p } 0 1 {A47R:U -> A46R:G: adjacent_3p } 0 2 {A46R:G -> A53R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A53R:C -> A46R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A47R:U -> A51R:U: pairing antiparallel trans one_hbond 81 Ww/Hw } 0 5 {A51R:U -> A47R:U: pairing antiparallel trans one_hbond 81 Hw/Ww } 0 6 {A51R:U -> A52R:A: adjacent_5p upward } 0 7 {A52R:A -> A51R:U: adjacent_3p downward } 0 8 {A52R:A -> A53R:C: adjacent_5p upward } 0 9 {A53R:C -> A52R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A95R:G 0 1 A96R:C 0 2 A107R:G 0 3 A108R:A 0 4 A109R:C 0 [Edges] 0 {A95R:G -> A96R:C: adjacent_5p upward } 0 1 {A96R:C -> A95R:G: adjacent_3p downward } 0 2 {A95R:G -> A109R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A109R:C -> A95R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A96R:C -> A107R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A107R:G -> A96R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A107R:G -> A108R:A: adjacent_5p } 0 7 {A108R:A -> A107R:G: adjacent_3p } 0 8 {A107R:G -> A109R:C: upward } 0 9 {A109R:C -> A107R:G: downward } 0 10 {A108R:A -> A109R:C: adjacent_5p } 0 11 {A109R:C -> A108R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A140R:G 0 1 A141R:G 0 2 A158R:U 0 3 A159R:G 0 4 A160R:C 0 [Edges] 0 {A140R:G -> A141R:G: adjacent_5p upward } 0 1 {A141R:G -> A140R:G: adjacent_3p downward } 0 2 {A140R:G -> A160R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A160R:C -> A140R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A141R:G -> A158R:U: pairing antiparallel cis one_hbond Ws/Ws } 0 5 {A158R:U -> A141R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 6 {A158R:U -> A159R:G: adjacent_5p } 0 7 {A159R:G -> A158R:U: adjacent_3p } 0 8 {A159R:G -> A160R:C: adjacent_5p } 0 9 {A160R:C -> A159R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 A181R:G 0 1 A182R:G 0 2 A187R:A 0 3 A188R:G 0 4 A189R:C 0 [Edges] 0 {A181R:G -> A182R:G: adjacent_5p upward } 0 1 {A182R:G -> A181R:G: adjacent_3p downward } 0 2 {A181R:G -> A189R:C: pairing antiparallel cis Ww/Ww } 0 3 {A189R:C -> A181R:G: pairing antiparallel cis Ww/Ww } 0 4 {A182R:G -> A187R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 5 {A187R:A -> A182R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 6 {A187R:A -> A188R:G: adjacent_5p } 0 7 {A188R:G -> A187R:A: adjacent_3p } 0 8 {A187R:A -> A189R:C: upward } 0 9 {A189R:C -> A187R:A: downward } 0 10 {A188R:G -> A189R:C: adjacent_5p } 0 11 {A189R:C -> A188R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A195R:G 0 1 A196R:C 0 2 A217R:G 0 3 A218R:G 0 4 A219R:C 0 [Edges] 0 {A195R:G -> A196R:C: adjacent_5p upward } 0 1 {A196R:C -> A195R:G: adjacent_3p downward } 0 2 {A195R:G -> A219R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A219R:C -> A195R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A196R:C -> A217R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A217R:G -> A196R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A217R:G -> A218R:G: adjacent_5p } 0 7 {A218R:G -> A217R:G: adjacent_3p } 0 8 {A217R:G -> A219R:C: upward } 0 9 {A219R:C -> A217R:G: downward } 0 10 {A218R:G -> A219R:C: adjacent_5p downward } 0 11 {A219R:C -> A218R:G: adjacent_3p upward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . MOLECULE: [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:A 0 2 A28R:A 0 3 A29R:A 0 4 A30R:A 0 [Edges] 0 {A6R:G -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> A30R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {A30R:A -> A6R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {A7R:A -> A28R:A: pairing parallel trans I Ww/Ww } 0 5 {A28R:A -> A7R:A: pairing parallel trans I Ww/Ww } 0 6 {A28R:A -> A29R:A: adjacent_5p } 0 7 {A29R:A -> A28R:A: adjacent_3p } 0 8 {A28R:A -> A30R:A: outward } 0 9 {A30R:A -> A28R:A: outward } 0 10 {A29R:A -> A30R:A: adjacent_5p } 0 11 {A30R:A -> A29R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . MOLECULE: [GraphModel] [Vertices] 0 B25R:U 0 1 B26R:G 0 2 B39R:C 0 3 B40R:U 0 4 B41R:C 0 [Edges] 0 {B25R:U -> B26R:G: adjacent_5p } 0 1 {B26R:G -> B25R:U: adjacent_3p } 0 2 {B25R:U -> B41R:C: pairing antiparallel trans one_hbond Ww/Ss } 0 3 {B41R:C -> B25R:U: pairing antiparallel trans one_hbond Ss/Ww } 0 4 {B26R:G -> B39R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {B39R:C -> B26R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {B39R:C -> B40R:U: adjacent_5p } 0 7 {B40R:U -> B39R:C: adjacent_3p } 0 8 {B40R:U -> B41R:C: adjacent_5p upward } 0 9 {B41R:C -> B40R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 13R:G 0 1 14R:U 0 2 6R:A 0 3 7R:C 0 4 8R:G 0 [Edges] 0 {6R:A -> 7R:C: adjacent_5p upward } 0 1 {7R:C -> 6R:A: adjacent_3p downward } 0 2 {6R:A -> 14R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {14R:U -> 6R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {7R:C -> 8R:G: adjacent_5p } 0 5 {8R:G -> 7R:C: adjacent_3p } 0 6 {7R:C -> 13R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {13R:G -> 7R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {8R:G -> 13R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 9 {13R:G -> 8R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 10 {13R:G -> 14R:U: adjacent_5p upward } 0 11 {14R:U -> 13R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . 7 9 1 11 . 3 . . 2 . 2 . 0 . 3 6 . 1 . 4 4 8 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 C61R:C 0 1 C62R:C 0 2 C52R:G 0 3 C53R:G 0 4 C54R:U 0 [Edges] 0 {C52R:G -> C53R:G: adjacent_5p upward } 0 1 {C53R:G -> C52R:G: adjacent_3p downward } 0 2 {C52R:G -> C62R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {C62R:C -> C52R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {C53R:G -> C54R:U: adjacent_5p upward } 0 5 {C54R:U -> C53R:G: adjacent_3p downward } 0 6 {C53R:G -> C61R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {C61R:C -> C53R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {C54R:U -> C61R:C: pairing antiparallel cis one_hbond 106 Ww/Ws } 0 9 {C61R:C -> C54R:U: pairing antiparallel cis one_hbond 106 Ws/Ww } 0 10 {C61R:C -> C62R:C: adjacent_5p } 0 11 {C62R:C -> C61R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . 7 9 1 11 . 3 . . 2 . 2 . 0 . 3 6 . 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 D61R:C 0 1 D62R:C 0 2 D52R:G 0 3 D53R:G 0 4 D54R:U 0 [Edges] 0 {D52R:G -> D53R:G: adjacent_5p upward } 0 1 {D53R:G -> D52R:G: adjacent_3p downward } 0 2 {D52R:G -> D62R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {D62R:C -> D52R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {D53R:G -> D54R:U: adjacent_5p upward } 0 5 {D54R:U -> D53R:G: adjacent_3p downward } 0 6 {D53R:G -> D61R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 7 {D61R:C -> D53R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 8 {D54R:U -> D61R:C: pairing antiparallel cis one_hbond 106 Ww/Ws } 0 9 {D61R:C -> D54R:U: pairing antiparallel cis one_hbond 106 Ws/Ww } 0 10 {D61R:C -> D62R:C: adjacent_5p } 0 11 {D62R:C -> D61R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . 7 9 1 11 . 3 . . 2 . 2 . 0 . 3 6 . 1 . 4 4 8 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 '0'33R:G 0 1 '0'34R:C 0 2 '0'448R:G 0 3 '0'449R:A 0 4 '0'450R:C 0 [Edges] 0 {'0'33R:G -> '0'34R:C: adjacent_5p upward } 0 1 {'0'34R:C -> '0'33R:G: adjacent_3p downward } 0 2 {'0'33R:G -> '0'450R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'450R:C -> '0'33R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'34R:C -> '0'448R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'448R:G -> '0'34R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'448R:G -> '0'449R:A: adjacent_5p } 0 7 {'0'449R:A -> '0'448R:G: adjacent_3p } 0 8 {'0'449R:A -> '0'450R:C: adjacent_5p } 0 9 {'0'450R:C -> '0'449R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'39R:G 0 1 '0'40R:C 0 2 '0'441R:A 0 3 '0'442R:A 0 4 '0'443R:C 0 [Edges] 0 {'0'39R:G -> '0'40R:C: adjacent_5p upward } 0 1 {'0'40R:C -> '0'39R:G: adjacent_3p downward } 0 2 {'0'39R:G -> '0'443R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'443R:C -> '0'39R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'40R:C -> '0'441R:A: pairing antiparallel cis 71 Ww/Ww } 0 5 {'0'441R:A -> '0'40R:C: pairing antiparallel cis 71 Ww/Ww } 0 6 {'0'40R:C -> '0'442R:A: pairing antiparallel cis one_hbond 78 Ww/Wh } 0 7 {'0'442R:A -> '0'40R:C: pairing antiparallel cis one_hbond 78 Wh/Ww } 0 8 {'0'441R:A -> '0'442R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 9 {'0'442R:A -> '0'441R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 10 {'0'442R:A -> '0'443R:C: adjacent_5p upward } 0 11 {'0'443R:C -> '0'442R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 . 2 . 5 . 8 . 3 . 7 9 . 10 4 3 . . 11 . [GraphModel] [Vertices] 0 '0'40R:C 0 1 '0'41R:G 0 2 '0'440R:C 0 3 '0'441R:A 0 4 '0'442R:A 0 [Edges] 0 {'0'40R:C -> '0'41R:G: adjacent_5p upward } 0 1 {'0'41R:G -> '0'40R:C: adjacent_3p downward } 0 2 {'0'40R:C -> '0'441R:A: pairing antiparallel cis 71 Ww/Ww } 0 3 {'0'441R:A -> '0'40R:C: pairing antiparallel cis 71 Ww/Ww } 0 4 {'0'40R:C -> '0'442R:A: pairing antiparallel cis one_hbond 78 Ww/Wh } 0 5 {'0'442R:A -> '0'40R:C: pairing antiparallel cis one_hbond 78 Wh/Ww } 0 6 {'0'41R:G -> '0'440R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'440R:C -> '0'41R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'440R:C -> '0'441R:A: adjacent_5p upward } 0 9 {'0'441R:A -> '0'440R:C: adjacent_3p downward } 0 10 {'0'441R:A -> '0'442R:A: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 11 {'0'442R:A -> '0'441R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . 2 4 1 1 . 6 . . 2 . 7 . 8 . 3 3 . 9 . 10 4 5 . . 11 . [GraphModel] [Vertices] 0 '0'41R:G 0 1 '0'42R:C 0 2 '0'149R:G 0 3 '0'150R:G 0 4 '0'151R:A 0 [Edges] 0 {'0'41R:G -> '0'42R:C: adjacent_5p } 0 1 {'0'42R:C -> '0'41R:G: adjacent_3p } 0 2 {'0'41R:G -> '0'151R:A: pairing parallel trans one_hbond Sw/Ww } 0 3 {'0'151R:A -> '0'41R:G: pairing parallel trans one_hbond Ww/Sw } 0 4 {'0'42R:C -> '0'149R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'149R:G -> '0'42R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'149R:G -> '0'150R:G: adjacent_5p upward } 0 7 {'0'150R:G -> '0'149R:G: adjacent_3p downward } 0 8 {'0'150R:G -> '0'151R:A: adjacent_5p } 0 9 {'0'151R:A -> '0'150R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'48R:A 0 1 '0'49R:A 0 2 '0'112R:G 0 3 '0'113R:A 0 4 '0'114R:A 0 [Edges] 0 {'0'48R:A -> '0'49R:A: adjacent_5p upward } 0 1 {'0'49R:A -> '0'48R:A: adjacent_3p downward } 0 2 {'0'48R:A -> '0'113R:A: outward } 0 3 {'0'113R:A -> '0'48R:A: outward } 0 4 {'0'48R:A -> '0'114R:A: pairing parallel trans II Hh/Hh } 0 5 {'0'114R:A -> '0'48R:A: pairing parallel trans II Hh/Hh } 0 6 {'0'49R:A -> '0'112R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {'0'112R:G -> '0'49R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {'0'112R:G -> '0'113R:A: adjacent_5p } 0 9 {'0'113R:A -> '0'112R:G: adjacent_3p } 0 10 {'0'112R:G -> '0'114R:A: inward } 0 11 {'0'114R:A -> '0'112R:G: inward } 0 12 {'0'113R:A -> '0'114R:A: adjacent_5p outward } 0 13 {'0'114R:A -> '0'113R:A: adjacent_3p outward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . 2 4 1 1 . 6 . . 2 . 7 . 8 10 3 3 . 9 . 12 4 5 . 11 13 . [GraphModel] [Vertices] 0 '0'112R:G 0 1 '0'113R:A 0 2 '0'47R:G 0 3 '0'48R:A 0 4 '0'49R:A 0 [Edges] 0 {'0'47R:G -> '0'48R:A: adjacent_5p } 0 1 {'0'48R:A -> '0'47R:G: adjacent_3p } 0 2 {'0'47R:G -> '0'113R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 3 {'0'113R:A -> '0'47R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 4 {'0'48R:A -> '0'49R:A: adjacent_5p upward } 0 5 {'0'49R:A -> '0'48R:A: adjacent_3p downward } 0 6 {'0'48R:A -> '0'113R:A: outward } 0 7 {'0'113R:A -> '0'48R:A: outward } 0 8 {'0'49R:A -> '0'112R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {'0'112R:G -> '0'49R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {'0'112R:G -> '0'113R:A: adjacent_5p } 0 11 {'0'113R:A -> '0'112R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 '0'153R:C 0 1 '0'154R:C 0 2 '0'182R:G 0 3 '0'183R:A 0 4 '0'184R:G 0 [Edges] 0 {'0'153R:C -> '0'154R:C: adjacent_5p } 0 1 {'0'154R:C -> '0'153R:C: adjacent_3p } 0 2 {'0'153R:C -> '0'184R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'184R:G -> '0'153R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'154R:C -> '0'182R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'182R:G -> '0'154R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'182R:G -> '0'183R:A: adjacent_5p } 0 7 {'0'183R:A -> '0'182R:G: adjacent_3p } 0 8 {'0'183R:A -> '0'184R:G: adjacent_5p upward } 0 9 {'0'184R:G -> '0'183R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'160R:A 0 1 '0'161R:A 0 2 '0'174R:A 0 3 '0'175R:G 0 4 '0'176R:U 0 [Edges] 0 {'0'160R:A -> '0'161R:A: adjacent_5p upward } 0 1 {'0'161R:A -> '0'160R:A: adjacent_3p downward } 0 2 {'0'160R:A -> '0'176R:U: pairing antiparallel trans XXIV Hh/Ww } 0 3 {'0'176R:U -> '0'160R:A: pairing antiparallel trans XXIV Ww/Hh } 0 4 {'0'161R:A -> '0'174R:A: pairing parallel trans II Hh/Hh } 0 5 {'0'174R:A -> '0'161R:A: pairing parallel trans II Hh/Hh } 0 6 {'0'174R:A -> '0'175R:G: adjacent_5p } 0 7 {'0'175R:G -> '0'174R:A: adjacent_3p } 0 8 {'0'174R:A -> '0'176R:U: outward } 0 9 {'0'176R:U -> '0'174R:A: outward } 0 10 {'0'175R:G -> '0'176R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {'0'176R:U -> '0'175R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'195R:C 0 1 '0'196R:G 0 2 '0'199R:A 0 3 '0'200R:U 0 4 '0'201R:G 0 [Edges] 0 {'0'195R:C -> '0'196R:G: adjacent_5p upward } 0 1 {'0'196R:G -> '0'195R:C: adjacent_3p downward } 0 2 {'0'195R:C -> '0'201R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'201R:G -> '0'195R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'196R:G -> '0'199R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {'0'199R:A -> '0'196R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {'0'199R:A -> '0'200R:U: adjacent_5p } 0 7 {'0'200R:U -> '0'199R:A: adjacent_3p } 0 8 {'0'199R:A -> '0'201R:G: upward } 0 9 {'0'201R:G -> '0'199R:A: downward } 0 10 {'0'200R:U -> '0'201R:G: adjacent_5p } 0 11 {'0'201R:G -> '0'200R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'202R:U 0 1 '0'203R:G 0 2 '0'192R:A 0 3 '0'193R:A 0 4 '0'194R:A 0 [Edges] 0 {'0'192R:A -> '0'193R:A: adjacent_5p } 0 1 {'0'193R:A -> '0'192R:A: adjacent_3p } 0 2 {'0'192R:A -> '0'194R:A: upward } 0 3 {'0'194R:A -> '0'192R:A: downward } 0 4 {'0'192R:A -> '0'203R:G: pairing antiparallel trans XI Hh/Ss } 0 5 {'0'203R:G -> '0'192R:A: pairing antiparallel trans XI Ss/Hh } 0 6 {'0'193R:A -> '0'194R:A: adjacent_5p } 0 7 {'0'194R:A -> '0'193R:A: adjacent_3p } 0 8 {'0'194R:A -> '0'202R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {'0'202R:U -> '0'194R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {'0'202R:U -> '0'203R:G: adjacent_5p upward } 0 11 {'0'203R:G -> '0'202R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 '0'203R:G 0 1 '0'204R:A 0 2 '0'190R:G 0 3 '0'191R:A 0 4 '0'192R:A 0 [Edges] 0 {'0'190R:G -> '0'191R:A: adjacent_5p } 0 1 {'0'191R:A -> '0'190R:G: adjacent_3p } 0 2 {'0'190R:G -> '0'204R:A: pairing antiparallel cis one_hbond Ss/Bs } 0 3 {'0'204R:A -> '0'190R:G: pairing antiparallel cis one_hbond Bs/Ss } 0 4 {'0'191R:A -> '0'192R:A: adjacent_5p } 0 5 {'0'192R:A -> '0'191R:A: adjacent_3p } 0 6 {'0'191R:A -> '0'204R:A: outward } 0 7 {'0'204R:A -> '0'191R:A: outward } 0 8 {'0'192R:A -> '0'203R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {'0'203R:G -> '0'192R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {'0'203R:G -> '0'204R:A: adjacent_5p } 0 11 {'0'204R:A -> '0'203R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 '0'226R:A 0 1 '0'227R:A 0 2 '0'212R:A 0 3 '0'213R:G 0 4 '0'214R:U 0 [Edges] 0 {'0'212R:A -> '0'213R:G: adjacent_5p } 0 1 {'0'213R:G -> '0'212R:A: adjacent_3p } 0 2 {'0'212R:A -> '0'214R:U: outward } 0 3 {'0'214R:U -> '0'212R:A: outward } 0 4 {'0'212R:A -> '0'227R:A: pairing parallel trans II Hh/Hh } 0 5 {'0'227R:A -> '0'212R:A: pairing parallel trans II Hh/Hh } 0 6 {'0'213R:G -> '0'214R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {'0'214R:U -> '0'213R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {'0'214R:U -> '0'226R:A: pairing antiparallel trans XXIV Ww/Hh } 0 9 {'0'226R:A -> '0'214R:U: pairing antiparallel trans XXIV Hh/Ww } 0 10 {'0'226R:A -> '0'227R:A: adjacent_5p upward } 0 11 {'0'227R:A -> '0'226R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 '0'274R:G 0 1 '0'275R:G 0 2 '0'374R:U 0 3 '0'375R:G 0 4 '0'376R:C 0 [Edges] 0 {'0'274R:G -> '0'275R:G: adjacent_5p upward } 0 1 {'0'275R:G -> '0'274R:G: adjacent_3p downward } 0 2 {'0'274R:G -> '0'376R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'376R:C -> '0'274R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'275R:G -> '0'374R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 5 {'0'374R:U -> '0'275R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 6 {'0'374R:U -> '0'375R:G: adjacent_5p } 0 7 {'0'375R:G -> '0'374R:U: adjacent_3p } 0 8 {'0'375R:G -> '0'376R:C: adjacent_5p } 0 9 {'0'376R:C -> '0'375R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'304R:G 0 1 '0'305R:A 0 2 '0'345R:G 0 3 '0'346R:U 0 4 '0'347R:A 0 [Edges] 0 {'0'304R:G -> '0'305R:A: adjacent_5p } 0 1 {'0'305R:A -> '0'304R:G: adjacent_3p } 0 2 {'0'304R:G -> '0'347R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {'0'347R:A -> '0'304R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {'0'305R:A -> '0'345R:G: pairing antiparallel cis one_hbond 67 Hw/Wh } 0 5 {'0'345R:G -> '0'305R:A: pairing antiparallel cis one_hbond 67 Wh/Hw } 0 6 {'0'345R:G -> '0'346R:U: adjacent_5p upward } 0 7 {'0'346R:U -> '0'345R:G: adjacent_3p downward } 0 8 {'0'346R:U -> '0'347R:A: adjacent_5p } 0 9 {'0'347R:A -> '0'346R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'312R:U 0 1 '0'313R:U 0 2 '0'317R:A 0 3 '0'318R:C 0 4 '0'319R:A 0 [Edges] 0 {'0'312R:U -> '0'313R:U: adjacent_5p upward } 0 1 {'0'313R:U -> '0'312R:U: adjacent_3p downward } 0 2 {'0'312R:U -> '0'319R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'319R:A -> '0'312R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'313R:U -> '0'317R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {'0'317R:A -> '0'313R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {'0'317R:A -> '0'318R:C: adjacent_5p } 0 7 {'0'318R:C -> '0'317R:A: adjacent_3p } 0 8 {'0'317R:A -> '0'319R:A: upward } 0 9 {'0'319R:A -> '0'317R:A: downward } 0 10 {'0'318R:C -> '0'319R:A: adjacent_5p } 0 11 {'0'319R:A -> '0'318R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'322R:G 0 1 '0'323R:C 0 2 '0'307R:G 0 3 '0'308R:U 0 4 '0'309R:C 0 [Edges] 0 {'0'307R:G -> '0'308R:U: adjacent_5p } 0 1 {'0'308R:U -> '0'307R:G: adjacent_3p } 0 2 {'0'307R:G -> '0'309R:C: upward } 0 3 {'0'309R:C -> '0'307R:G: downward } 0 4 {'0'307R:G -> '0'323R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'323R:C -> '0'307R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'308R:U -> '0'309R:C: adjacent_5p } 0 7 {'0'309R:C -> '0'308R:U: adjacent_3p } 0 8 {'0'309R:C -> '0'322R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'322R:G -> '0'309R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'322R:G -> '0'323R:C: adjacent_5p upward } 0 11 {'0'323R:C -> '0'322R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 '0'339R:A 0 1 '0'340R:A 0 2 '0'306R:A 0 3 '0'307R:G 0 4 '0'308R:U 0 [Edges] 0 {'0'306R:A -> '0'307R:G: adjacent_5p } 0 1 {'0'307R:G -> '0'306R:A: adjacent_3p } 0 2 {'0'306R:A -> '0'340R:A: pairing parallel trans one_hbond Bs/Ss } 0 3 {'0'340R:A -> '0'306R:A: pairing parallel trans one_hbond Ss/Bs } 0 4 {'0'307R:G -> '0'308R:U: adjacent_5p } 0 5 {'0'308R:U -> '0'307R:G: adjacent_3p } 0 6 {'0'308R:U -> '0'339R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'339R:A -> '0'308R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'339R:A -> '0'340R:A: adjacent_5p } 0 9 {'0'340R:A -> '0'339R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 '0'345R:G 0 1 '0'346R:U 0 2 '0'329R:A 0 3 '0'330R:C 0 4 '0'331R:A 0 [Edges] 0 {'0'329R:A -> '0'330R:C: adjacent_5p } 0 1 {'0'330R:C -> '0'329R:A: adjacent_3p } 0 2 {'0'329R:A -> '0'346R:U: pairing antiparallel cis 43 Ss/Ww } 0 3 {'0'346R:U -> '0'329R:A: pairing antiparallel cis 43 Ww/Ss } 0 4 {'0'330R:C -> '0'331R:A: adjacent_5p } 0 5 {'0'331R:A -> '0'330R:C: adjacent_3p } 0 6 {'0'331R:A -> '0'345R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {'0'345R:G -> '0'331R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {'0'345R:G -> '0'346R:U: adjacent_5p upward } 0 9 {'0'346R:U -> '0'345R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 '0'407R:A 0 1 '0'408R:A 0 2 '0'380R:A 0 3 '0'381R:G 0 4 '0'382R:U 0 [Edges] 0 {'0'380R:A -> '0'381R:G: adjacent_5p } 0 1 {'0'381R:G -> '0'380R:A: adjacent_3p } 0 2 {'0'380R:A -> '0'408R:A: pairing parallel trans II Hh/Hh } 0 3 {'0'408R:A -> '0'380R:A: pairing parallel trans II Hh/Hh } 0 4 {'0'381R:G -> '0'382R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 5 {'0'382R:U -> '0'381R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 6 {'0'382R:U -> '0'407R:A: pairing antiparallel trans XXIV Ws/Hh } 0 7 {'0'407R:A -> '0'382R:U: pairing antiparallel trans XXIV Hh/Ws } 0 8 {'0'407R:A -> '0'408R:A: adjacent_5p upward } 0 9 {'0'408R:A -> '0'407R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 '0'476R:A 0 1 '0'477R:A 0 2 '0'463R:A 0 3 '0'464R:G 0 4 '0'465R:U 0 [Edges] 0 {'0'463R:A -> '0'464R:G: adjacent_5p } 0 1 {'0'464R:G -> '0'463R:A: adjacent_3p } 0 2 {'0'463R:A -> '0'465R:U: outward } 0 3 {'0'465R:U -> '0'463R:A: outward } 0 4 {'0'463R:A -> '0'477R:A: pairing parallel trans II Hh/Hh } 0 5 {'0'477R:A -> '0'463R:A: pairing parallel trans II Hh/Hh } 0 6 {'0'464R:G -> '0'465R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {'0'465R:U -> '0'464R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {'0'465R:U -> '0'476R:A: pairing antiparallel trans XXIV Ww/Hh } 0 9 {'0'476R:A -> '0'465R:U: pairing antiparallel trans XXIV Hh/Ww } 0 10 {'0'476R:A -> '0'477R:A: adjacent_5p upward } 0 11 {'0'477R:A -> '0'476R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 '0'502R:A 0 1 '0'503R:G 0 2 '0'488R:U 0 3 '0'489R:A 0 4 '0'490R:C 0 [Edges] 0 {'0'488R:U -> '0'489R:A: adjacent_5p } 0 1 {'0'489R:A -> '0'488R:U: adjacent_3p } 0 2 {'0'488R:U -> '0'503R:G: pairing antiparallel cis 84 Bs/Ww } 0 3 {'0'503R:G -> '0'488R:U: pairing antiparallel cis 84 Ww/Bs } 0 4 {'0'489R:A -> '0'490R:C: adjacent_5p upward } 0 5 {'0'490R:C -> '0'489R:A: adjacent_3p downward } 0 6 {'0'489R:A -> '0'503R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {'0'503R:G -> '0'489R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {'0'490R:C -> '0'502R:A: pairing antiparallel cis 71 Ww/Ww } 0 9 {'0'502R:A -> '0'490R:C: pairing antiparallel cis 71 Ww/Ww } 0 10 {'0'502R:A -> '0'503R:G: adjacent_5p upward } 0 11 {'0'503R:G -> '0'502R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 '0'511R:A 0 1 '0'512R:G 0 2 '0'504R:G 0 3 '0'505R:C 0 4 '0'506R:G 0 [Edges] 0 {'0'504R:G -> '0'505R:C: adjacent_5p upward } 0 1 {'0'505R:C -> '0'504R:G: adjacent_3p downward } 0 2 {'0'504R:G -> '0'512R:G: pairing antiparallel trans 115 Ww/Bh } 0 3 {'0'512R:G -> '0'504R:G: pairing antiparallel trans 115 Bh/Ww } 0 4 {'0'505R:C -> '0'506R:G: adjacent_5p upward } 0 5 {'0'506R:G -> '0'505R:C: adjacent_3p downward } 0 6 {'0'506R:G -> '0'511R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 7 {'0'511R:A -> '0'506R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 8 {'0'511R:A -> '0'512R:G: adjacent_5p } 0 9 {'0'512R:G -> '0'511R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 '0'641R:G 0 1 '0'642R:G 0 2 '0'1358R:A 0 3 '0'1359R:U 0 4 '0'1360R:C 0 [Edges] 0 {'0'641R:G -> '0'642R:G: adjacent_5p upward } 0 1 {'0'642R:G -> '0'641R:G: adjacent_3p downward } 0 2 {'0'641R:G -> '0'1360R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1360R:C -> '0'641R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'642R:G -> '0'1358R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {'0'1358R:A -> '0'642R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {'0'1358R:A -> '0'1359R:U: adjacent_5p } 0 7 {'0'1359R:U -> '0'1358R:A: adjacent_3p } 0 8 {'0'1358R:A -> '0'1360R:C: upward } 0 9 {'0'1360R:C -> '0'1358R:A: downward } 0 10 {'0'1359R:U -> '0'1360R:C: adjacent_5p } 0 11 {'0'1360R:C -> '0'1359R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'645R:U 0 1 '0'646R:G 0 2 '0'759R:C 0 3 '0'760R:G 0 4 '0'761R:A 0 [Edges] 0 {'0'645R:U -> '0'646R:G: adjacent_5p } 0 1 {'0'646R:G -> '0'645R:U: adjacent_3p } 0 2 {'0'645R:U -> '0'761R:A: pairing parallel trans 42 Ws/Ss } 0 3 {'0'761R:A -> '0'645R:U: pairing parallel trans 42 Ss/Ws } 0 4 {'0'646R:G -> '0'759R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'759R:C -> '0'646R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'646R:G -> '0'761R:A: downward } 0 7 {'0'761R:A -> '0'646R:G: upward } 0 8 {'0'759R:C -> '0'760R:G: adjacent_5p } 0 9 {'0'760R:G -> '0'759R:C: adjacent_3p } 0 10 {'0'759R:C -> '0'761R:A: inward } 0 11 {'0'761R:A -> '0'759R:C: inward } 0 12 {'0'760R:G -> '0'761R:A: adjacent_5p upward } 0 13 {'0'761R:A -> '0'760R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . 6 2 . 5 . 8 10 3 . . 9 . 12 4 3 7 11 13 . [GraphModel] [Vertices] 0 '0'767R:A 0 1 '0'768R:U 0 2 '0'893R:C 0 3 '0'894R:A 0 4 '0'895R:A 0 [Edges] 0 {'0'767R:A -> '0'768R:U: adjacent_5p } 0 1 {'0'768R:U -> '0'767R:A: adjacent_3p } 0 2 {'0'767R:A -> '0'895R:A: pairing antiparallel trans V Hh/Ww } 0 3 {'0'895R:A -> '0'767R:A: pairing antiparallel trans V Ww/Hh } 0 4 {'0'768R:U -> '0'893R:C: pairing parallel trans one_hbond 105 Wh/Wh } 0 5 {'0'893R:C -> '0'768R:U: pairing parallel trans one_hbond 105 Wh/Wh } 0 6 {'0'768R:U -> '0'895R:A: outward } 0 7 {'0'895R:A -> '0'768R:U: outward } 0 8 {'0'893R:C -> '0'894R:A: adjacent_5p } 0 9 {'0'894R:A -> '0'893R:C: adjacent_3p } 0 10 {'0'894R:A -> '0'895R:A: adjacent_5p } 0 11 {'0'895R:A -> '0'894R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . 6 2 . 5 . 8 . 3 . . 9 . 10 4 3 7 . 11 . [GraphModel] [Vertices] 0 '0'788R:A 0 1 '0'789R:C 0 2 '0'856R:G 0 3 '0'857R:A 0 4 '0'858R:U 0 [Edges] 0 {'0'788R:A -> '0'789R:C: adjacent_5p upward } 0 1 {'0'789R:C -> '0'788R:A: adjacent_3p downward } 0 2 {'0'788R:A -> '0'858R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'858R:U -> '0'788R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'789R:C -> '0'856R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'856R:G -> '0'789R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'856R:G -> '0'857R:A: adjacent_5p } 0 7 {'0'857R:A -> '0'856R:G: adjacent_3p } 0 8 {'0'856R:G -> '0'858R:U: upward } 0 9 {'0'858R:U -> '0'856R:G: downward } 0 10 {'0'857R:A -> '0'858R:U: adjacent_5p } 0 11 {'0'858R:U -> '0'857R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'793R:A 0 1 '0'794R:U 0 2 '0'819R:A 0 3 '0'820R:G 0 4 '0'821R:U 0 [Edges] 0 {'0'793R:A -> '0'794R:U: adjacent_5p upward } 0 1 {'0'794R:U -> '0'793R:A: adjacent_3p downward } 0 2 {'0'793R:A -> '0'821R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'821R:U -> '0'793R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'794R:U -> '0'819R:A: pairing antiparallel cis XX Ww/Ww } 0 5 {'0'819R:A -> '0'794R:U: pairing antiparallel cis XX Ww/Ww } 0 6 {'0'819R:A -> '0'820R:G: adjacent_5p } 0 7 {'0'820R:G -> '0'819R:A: adjacent_3p } 0 8 {'0'819R:A -> '0'821R:U: upward } 0 9 {'0'821R:U -> '0'819R:A: downward } 0 10 {'0'820R:G -> '0'821R:U: adjacent_5p } 0 11 {'0'821R:U -> '0'820R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'847R:C 0 1 '0'848R:C 0 2 '0'834R:G 0 3 '0'835R:U 0 4 '0'836R:G 0 [Edges] 0 {'0'834R:G -> '0'835R:U: adjacent_5p } 0 1 {'0'835R:U -> '0'834R:G: adjacent_3p } 0 2 {'0'834R:G -> '0'836R:G: upward } 0 3 {'0'836R:G -> '0'834R:G: downward } 0 4 {'0'834R:G -> '0'848R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'848R:C -> '0'834R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'835R:U -> '0'836R:G: adjacent_5p } 0 7 {'0'836R:G -> '0'835R:U: adjacent_3p } 0 8 {'0'836R:G -> '0'847R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'847R:C -> '0'836R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'847R:C -> '0'848R:C: adjacent_5p upward } 0 11 {'0'848R:C -> '0'847R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 '0'850R:U 0 1 '0'851R:C 0 2 '0'830R:G 0 3 '0'831R:U 0 4 '0'832R:U 0 [Edges] 0 {'0'830R:G -> '0'831R:U: adjacent_5p upward } 0 1 {'0'831R:U -> '0'830R:G: adjacent_3p downward } 0 2 {'0'830R:G -> '0'851R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'851R:C -> '0'830R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'831R:U -> '0'832R:U: adjacent_5p } 0 5 {'0'832R:U -> '0'831R:U: adjacent_3p } 0 6 {'0'832R:U -> '0'850R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {'0'850R:U -> '0'832R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {'0'850R:U -> '0'851R:C: adjacent_5p upward } 0 9 {'0'851R:C -> '0'850R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 '0'872R:U 0 1 '0'873R:G 0 2 '0'876R:A 0 3 '0'877R:G 0 4 '0'878R:G 0 [Edges] 0 {'0'872R:U -> '0'873R:G: adjacent_5p upward } 0 1 {'0'873R:G -> '0'872R:U: adjacent_3p downward } 0 2 {'0'872R:U -> '0'878R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'878R:G -> '0'872R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'873R:G -> '0'876R:A: pairing parallel trans X Ss/Ww } 0 5 {'0'876R:A -> '0'873R:G: pairing parallel trans X Ww/Ss } 0 6 {'0'876R:A -> '0'877R:G: adjacent_5p } 0 7 {'0'877R:G -> '0'876R:A: adjacent_3p } 0 8 {'0'876R:A -> '0'878R:G: outward } 0 9 {'0'878R:G -> '0'876R:A: outward } 0 10 {'0'877R:G -> '0'878R:G: adjacent_5p } 0 11 {'0'878R:G -> '0'877R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'943R:A 0 1 '0'944R:G 0 2 '0'1023R:C 0 3 '0'1024R:G 0 4 '0'1025R:C 0 [Edges] 0 {'0'943R:A -> '0'944R:G: adjacent_5p } 0 1 {'0'944R:G -> '0'943R:A: adjacent_3p } 0 2 {'0'943R:A -> '0'1025R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 3 {'0'1025R:C -> '0'943R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 4 {'0'944R:G -> '0'1023R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'1023R:C -> '0'944R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'1023R:C -> '0'1024R:G: adjacent_5p upward } 0 7 {'0'1024R:G -> '0'1023R:C: adjacent_3p downward } 0 8 {'0'1024R:G -> '0'1025R:C: adjacent_5p upward } 0 9 {'0'1025R:C -> '0'1024R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'956R:G 0 1 '0'957R:A 0 2 '0'1009R:U 0 3 '0'1010R:C 0 4 '0'1011R:C 0 [Edges] 0 {'0'956R:G -> '0'957R:A: adjacent_5p upward } 0 1 {'0'957R:A -> '0'956R:G: adjacent_3p downward } 0 2 {'0'956R:G -> '0'1011R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1011R:C -> '0'956R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'957R:A -> '0'1009R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {'0'1009R:U -> '0'957R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {'0'1009R:U -> '0'1010R:C: adjacent_5p pairing parallel cis 99 Bs/Hh } 0 7 {'0'1010R:C -> '0'1009R:U: adjacent_3p pairing parallel cis 99 Hh/Bs } 0 8 {'0'1010R:C -> '0'1011R:C: adjacent_5p } 0 9 {'0'1011R:C -> '0'1010R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'1023R:C 0 1 '0'1024R:G 0 2 '0'942R:U 0 3 '0'943R:A 0 4 '0'944R:G 0 [Edges] 0 {'0'942R:U -> '0'943R:A: adjacent_5p } 0 1 {'0'943R:A -> '0'942R:U: adjacent_3p } 0 2 {'0'942R:U -> '0'1024R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'1024R:G -> '0'942R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'943R:A -> '0'944R:G: adjacent_5p } 0 5 {'0'944R:G -> '0'943R:A: adjacent_3p } 0 6 {'0'944R:G -> '0'1023R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1023R:C -> '0'944R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1023R:C -> '0'1024R:G: adjacent_5p upward } 0 9 {'0'1024R:G -> '0'1023R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 '0'1054R:G 0 1 '0'1055R:G 0 2 '0'1058R:A 0 3 '0'1059R:G 0 4 '0'1060R:C 0 [Edges] 0 {'0'1054R:G -> '0'1055R:G: adjacent_5p upward } 0 1 {'0'1055R:G -> '0'1054R:G: adjacent_3p downward } 0 2 {'0'1054R:G -> '0'1060R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1060R:C -> '0'1054R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1055R:G -> '0'1058R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 5 {'0'1058R:A -> '0'1055R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 6 {'0'1058R:A -> '0'1059R:G: adjacent_5p } 0 7 {'0'1059R:G -> '0'1058R:A: adjacent_3p } 0 8 {'0'1058R:A -> '0'1060R:C: upward } 0 9 {'0'1060R:C -> '0'1058R:A: downward } 0 10 {'0'1059R:G -> '0'1060R:C: adjacent_5p } 0 11 {'0'1060R:C -> '0'1059R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'1073R:A 0 1 '0'1074R:G 0 2 '0'1085R:C 0 3 '0'1086R:A 0 4 '0'1087R:G 0 [Edges] 0 {'0'1073R:A -> '0'1074R:G: adjacent_5p upward } 0 1 {'0'1074R:G -> '0'1073R:A: adjacent_3p downward } 0 2 {'0'1073R:A -> '0'1087R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 3 {'0'1087R:G -> '0'1073R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 4 {'0'1074R:G -> '0'1085R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'1085R:C -> '0'1074R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'1085R:C -> '0'1086R:A: adjacent_5p upward } 0 7 {'0'1086R:A -> '0'1085R:C: adjacent_3p downward } 0 8 {'0'1086R:A -> '0'1087R:G: adjacent_5p } 0 9 {'0'1087R:G -> '0'1086R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'1095R:U 0 1 '0'1096R:U 0 2 '0'1259R:A 0 3 '0'1260R:G 0 4 '0'1261R:A 0 [Edges] 0 {'0'1095R:U -> '0'1096R:U: adjacent_5p upward } 0 1 {'0'1096R:U -> '0'1095R:U: adjacent_3p downward } 0 2 {'0'1095R:U -> '0'1261R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1261R:A -> '0'1095R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1096R:U -> '0'1259R:A: pairing antiparallel trans XXIV Ww/Hh } 0 5 {'0'1259R:A -> '0'1096R:U: pairing antiparallel trans XXIV Hh/Ww } 0 6 {'0'1259R:A -> '0'1260R:G: adjacent_5p } 0 7 {'0'1260R:G -> '0'1259R:A: adjacent_3p } 0 8 {'0'1259R:A -> '0'1261R:A: upward } 0 9 {'0'1261R:A -> '0'1259R:A: downward } 0 10 {'0'1260R:G -> '0'1261R:A: adjacent_5p } 0 11 {'0'1261R:A -> '0'1260R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'1115R:U 0 1 '0'1116R:U 0 2 '0'1246R:A 0 3 '0'1247R:A 0 4 '0'1248R:A 0 [Edges] 0 {'0'1115R:U -> '0'1116R:U: adjacent_5p } 0 1 {'0'1116R:U -> '0'1115R:U: adjacent_3p } 0 2 {'0'1115R:U -> '0'1248R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1248R:A -> '0'1115R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1116R:U -> '0'1246R:A: pairing antiparallel trans one_hbond 46 Ws/Bh } 0 5 {'0'1246R:A -> '0'1116R:U: pairing antiparallel trans one_hbond 46 Bh/Ws } 0 6 {'0'1246R:A -> '0'1247R:A: adjacent_5p } 0 7 {'0'1247R:A -> '0'1246R:A: adjacent_3p } 0 8 {'0'1246R:A -> '0'1248R:A: upward } 0 9 {'0'1248R:A -> '0'1246R:A: downward } 0 10 {'0'1247R:A -> '0'1248R:A: adjacent_5p } 0 11 {'0'1248R:A -> '0'1247R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'1213R:C 0 1 '0'1214R:G 0 2 '0'1152R:A 0 3 '0'1153R:C 0 4 '0'1154R:A 0 [Edges] 0 {'0'1152R:A -> '0'1153R:C: adjacent_5p upward } 0 1 {'0'1153R:C -> '0'1152R:A: adjacent_3p downward } 0 2 {'0'1152R:A -> '0'1214R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 3 {'0'1214R:G -> '0'1152R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 4 {'0'1153R:C -> '0'1154R:A: adjacent_5p upward } 0 5 {'0'1154R:A -> '0'1153R:C: adjacent_3p downward } 0 6 {'0'1154R:A -> '0'1213R:C: pairing antiparallel trans one_hbond 78 Wh/Ws } 0 7 {'0'1213R:C -> '0'1154R:A: pairing antiparallel trans one_hbond 78 Ws/Wh } 0 8 {'0'1213R:C -> '0'1214R:G: adjacent_5p upward } 0 9 {'0'1214R:G -> '0'1213R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 '0'1225R:C 0 1 '0'1226R:G 0 2 '0'1136R:U 0 3 '0'1137R:G 0 4 '0'1138R:G 0 [Edges] 0 {'0'1136R:U -> '0'1137R:G: adjacent_5p } 0 1 {'0'1137R:G -> '0'1136R:U: adjacent_3p } 0 2 {'0'1136R:U -> '0'1226R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'1226R:G -> '0'1136R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'1137R:G -> '0'1138R:G: adjacent_5p } 0 5 {'0'1138R:G -> '0'1137R:G: adjacent_3p } 0 6 {'0'1138R:G -> '0'1225R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1225R:C -> '0'1138R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1138R:G -> '0'1226R:G: outward } 0 9 {'0'1226R:G -> '0'1138R:G: outward } 0 10 {'0'1225R:C -> '0'1226R:G: adjacent_5p } 0 11 {'0'1226R:G -> '0'1225R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 7 1 11 . 3 . 9 2 . 2 . 0 . 3 . . 1 . 4 4 6 8 . 5 . [GraphModel] [Vertices] 0 '0'1253R:C 0 1 '0'1254R:C 0 2 '0'1108R:G 0 3 '0'1109R:U 0 4 '0'1110R:G 0 [Edges] 0 {'0'1108R:G -> '0'1109R:U: adjacent_5p } 0 1 {'0'1109R:U -> '0'1108R:G: adjacent_3p } 0 2 {'0'1108R:G -> '0'1110R:G: upward } 0 3 {'0'1110R:G -> '0'1108R:G: downward } 0 4 {'0'1108R:G -> '0'1254R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'1254R:C -> '0'1108R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'1109R:U -> '0'1110R:G: adjacent_5p } 0 7 {'0'1110R:G -> '0'1109R:U: adjacent_3p } 0 8 {'0'1110R:G -> '0'1253R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'1253R:C -> '0'1110R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'1253R:C -> '0'1254R:C: adjacent_5p } 0 11 {'0'1254R:C -> '0'1253R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 '0'1258R:G 0 1 '0'1259R:A 0 2 '0'1096R:U 0 3 '0'1097R:A 0 4 '0'1098R:A 0 [Edges] 0 {'0'1096R:U -> '0'1097R:A: adjacent_5p } 0 1 {'0'1097R:A -> '0'1096R:U: adjacent_3p } 0 2 {'0'1096R:U -> '0'1259R:A: pairing antiparallel trans XXIV Ww/Hh } 0 3 {'0'1259R:A -> '0'1096R:U: pairing antiparallel trans XXIV Hh/Ww } 0 4 {'0'1097R:A -> '0'1098R:A: adjacent_5p upward } 0 5 {'0'1098R:A -> '0'1097R:A: adjacent_3p downward } 0 6 {'0'1097R:A -> '0'1259R:A: outward } 0 7 {'0'1259R:A -> '0'1097R:A: outward } 0 8 {'0'1098R:A -> '0'1258R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {'0'1258R:G -> '0'1098R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {'0'1258R:G -> '0'1259R:A: adjacent_5p } 0 11 {'0'1259R:A -> '0'1258R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 '0'1302R:G 0 1 '0'1303R:C 0 2 '0'1351R:G 0 3 '0'1352R:A 0 4 '0'1353R:C 0 [Edges] 0 {'0'1302R:G -> '0'1303R:C: adjacent_5p upward } 0 1 {'0'1303R:C -> '0'1302R:G: adjacent_3p downward } 0 2 {'0'1302R:G -> '0'1353R:C: pairing antiparallel cis 127 Ww/Bs } 0 3 {'0'1353R:C -> '0'1302R:G: pairing antiparallel cis 127 Bs/Ww } 0 4 {'0'1303R:C -> '0'1351R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'1351R:G -> '0'1303R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'1351R:G -> '0'1352R:A: adjacent_5p } 0 7 {'0'1352R:A -> '0'1351R:G: adjacent_3p } 0 8 {'0'1351R:G -> '0'1353R:C: upward } 0 9 {'0'1353R:C -> '0'1351R:G: downward } 0 10 {'0'1352R:A -> '0'1353R:C: adjacent_5p } 0 11 {'0'1353R:C -> '0'1352R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'1404R:C 0 1 '0'1405R:U 0 2 '0'1716R:A 0 3 '0'1717R:A 0 4 '0'1718R:G 0 [Edges] 0 {'0'1404R:C -> '0'1405R:U: adjacent_5p } 0 1 {'0'1405R:U -> '0'1404R:C: adjacent_3p } 0 2 {'0'1404R:C -> '0'1718R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1718R:G -> '0'1404R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1405R:U -> '0'1716R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {'0'1716R:A -> '0'1405R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {'0'1716R:A -> '0'1717R:A: adjacent_5p upward } 0 7 {'0'1717R:A -> '0'1716R:A: adjacent_3p downward } 0 8 {'0'1717R:A -> '0'1718R:G: adjacent_5p upward } 0 9 {'0'1718R:G -> '0'1717R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'1414R:A 0 1 '0'1415R:G 0 2 '0'1680R:C 0 3 '0'1681R:G 0 4 '0'1682R:A 0 [Edges] 0 {'0'1414R:A -> '0'1415R:G: adjacent_5p upward } 0 1 {'0'1415R:G -> '0'1414R:A: adjacent_3p downward } 0 2 {'0'1414R:A -> '0'1681R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'1681R:G -> '0'1414R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'1414R:A -> '0'1682R:A: pairing parallel trans I Ww/Ww } 0 5 {'0'1682R:A -> '0'1414R:A: pairing parallel trans I Ww/Ww } 0 6 {'0'1415R:G -> '0'1680R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1680R:C -> '0'1415R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1680R:C -> '0'1681R:G: adjacent_5p upward } 0 9 {'0'1681R:G -> '0'1680R:C: adjacent_3p downward } 0 10 {'0'1681R:G -> '0'1682R:A: adjacent_5p } 0 11 {'0'1682R:A -> '0'1681R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . 2 4 1 1 . 6 . . 2 . 7 . 8 . 3 3 . 9 . 10 4 5 . . 11 . [GraphModel] [Vertices] 0 '0'1425R:G 0 1 '0'1426R:C 0 2 '0'1437R:A 0 3 '0'1438R:G 0 4 '0'1439R:C 0 [Edges] 0 {'0'1425R:G -> '0'1426R:C: adjacent_5p upward } 0 1 {'0'1426R:C -> '0'1425R:G: adjacent_3p downward } 0 2 {'0'1425R:G -> '0'1439R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1439R:C -> '0'1425R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1426R:C -> '0'1437R:A: pairing antiparallel trans XXV Ww/Hw } 0 5 {'0'1437R:A -> '0'1426R:C: pairing antiparallel trans XXV Hw/Ww } 0 6 {'0'1437R:A -> '0'1438R:G: adjacent_5p } 0 7 {'0'1438R:G -> '0'1437R:A: adjacent_3p } 0 8 {'0'1437R:A -> '0'1439R:C: upward } 0 9 {'0'1439R:C -> '0'1437R:A: downward } 0 10 {'0'1438R:G -> '0'1439R:C: adjacent_5p } 0 11 {'0'1439R:C -> '0'1438R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'1428R:C 0 1 '0'1429R:U 0 2 '0'1437R:A 0 3 '0'1438R:G 0 4 '0'1439R:C 0 [Edges] 0 {'0'1428R:C -> '0'1429R:U: adjacent_5p upward } 0 1 {'0'1429R:U -> '0'1428R:C: adjacent_3p downward } 0 2 {'0'1428R:C -> '0'1439R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 3 {'0'1439R:C -> '0'1428R:C: pairing antiparallel cis one_hbond Ss/Wh } 0 4 {'0'1429R:U -> '0'1437R:A: pairing antiparallel cis XX Ww/Ww } 0 5 {'0'1437R:A -> '0'1429R:U: pairing antiparallel cis XX Ww/Ww } 0 6 {'0'1437R:A -> '0'1438R:G: adjacent_5p } 0 7 {'0'1438R:G -> '0'1437R:A: adjacent_3p } 0 8 {'0'1437R:A -> '0'1439R:C: upward } 0 9 {'0'1439R:C -> '0'1437R:A: downward } 0 10 {'0'1438R:G -> '0'1439R:C: adjacent_5p } 0 11 {'0'1439R:C -> '0'1438R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'1444R:G 0 1 '0'1445R:G 0 2 '0'1418R:U 0 3 '0'1419R:U 0 4 '0'1420R:C 0 [Edges] 0 {'0'1418R:U -> '0'1419R:U: adjacent_5p } 0 1 {'0'1419R:U -> '0'1418R:U: adjacent_3p } 0 2 {'0'1418R:U -> '0'1445R:G: pairing parallel trans one_hbond Ws/Ww } 0 3 {'0'1445R:G -> '0'1418R:U: pairing parallel trans one_hbond Ww/Ws } 0 4 {'0'1419R:U -> '0'1420R:C: adjacent_5p } 0 5 {'0'1420R:C -> '0'1419R:U: adjacent_3p } 0 6 {'0'1420R:C -> '0'1444R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'1444R:G -> '0'1420R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'1444R:G -> '0'1445R:G: adjacent_5p upward } 0 9 {'0'1445R:G -> '0'1444R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 '0'1466R:C 0 1 '0'1467R:C 0 2 '0'1475R:G 0 3 '0'1476R:A 0 4 '0'1477R:C 0 [Edges] 0 {'0'1466R:C -> '0'1467R:C: adjacent_5p upward } 0 1 {'0'1467R:C -> '0'1466R:C: adjacent_3p downward } 0 2 {'0'1466R:C -> '0'1477R:C: pairing antiparallel cis one_hbond 137 Ww/Wh } 0 3 {'0'1477R:C -> '0'1466R:C: pairing antiparallel cis one_hbond 137 Wh/Ww } 0 4 {'0'1467R:C -> '0'1475R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'1475R:G -> '0'1467R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'1475R:G -> '0'1476R:A: adjacent_5p } 0 7 {'0'1476R:A -> '0'1475R:G: adjacent_3p } 0 8 {'0'1476R:A -> '0'1477R:C: adjacent_5p upward } 0 9 {'0'1477R:C -> '0'1476R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'1468R:G 0 1 '0'1469R:C 0 2 '0'1472R:C 0 3 '0'1473R:U 0 4 '0'1474R:C 0 [Edges] 0 {'0'1468R:G -> '0'1469R:C: adjacent_5p upward } 0 1 {'0'1469R:C -> '0'1468R:G: adjacent_3p downward } 0 2 {'0'1468R:G -> '0'1474R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1474R:C -> '0'1468R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1469R:C -> '0'1472R:C: pairing antiparallel trans one_hbond Ws/Hh } 0 5 {'0'1472R:C -> '0'1469R:C: pairing antiparallel trans one_hbond Hh/Ws } 0 6 {'0'1472R:C -> '0'1473R:U: adjacent_5p } 0 7 {'0'1473R:U -> '0'1472R:C: adjacent_3p } 0 8 {'0'1472R:C -> '0'1474R:C: upward } 0 9 {'0'1474R:C -> '0'1472R:C: downward } 0 10 {'0'1473R:U -> '0'1474R:C: adjacent_5p } 0 11 {'0'1474R:C -> '0'1473R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'1484R:G 0 1 '0'1485R:A 0 2 '0'1457R:U 0 3 '0'1458R:A 0 4 '0'1459R:A 0 [Edges] 0 {'0'1457R:U -> '0'1458R:A: adjacent_5p } 0 1 {'0'1458R:A -> '0'1457R:U: adjacent_3p } 0 2 {'0'1457R:U -> '0'1485R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {'0'1485R:A -> '0'1457R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {'0'1458R:A -> '0'1459R:A: adjacent_5p upward } 0 5 {'0'1459R:A -> '0'1458R:A: adjacent_3p downward } 0 6 {'0'1458R:A -> '0'1485R:A: outward } 0 7 {'0'1485R:A -> '0'1458R:A: outward } 0 8 {'0'1459R:A -> '0'1484R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {'0'1484R:G -> '0'1459R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {'0'1484R:G -> '0'1485R:A: adjacent_5p } 0 11 {'0'1485R:A -> '0'1484R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 '0'1571R:G 0 1 '0'1572R:A 0 2 '0'1624R:A 0 3 '0'1625R:U 0 4 '0'1626R:A 0 [Edges] 0 {'0'1571R:G -> '0'1572R:A: adjacent_5p } 0 1 {'0'1572R:A -> '0'1571R:G: adjacent_3p } 0 2 {'0'1571R:G -> '0'1624R:A: upward } 0 3 {'0'1624R:A -> '0'1571R:G: downward } 0 4 {'0'1571R:G -> '0'1626R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {'0'1626R:A -> '0'1571R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {'0'1572R:A -> '0'1624R:A: pairing parallel trans II Hh/Hh } 0 7 {'0'1624R:A -> '0'1572R:A: pairing parallel trans II Hh/Hh } 0 8 {'0'1624R:A -> '0'1625R:U: adjacent_5p } 0 9 {'0'1625R:U -> '0'1624R:A: adjacent_3p } 0 10 {'0'1624R:A -> '0'1626R:A: outward } 0 11 {'0'1626R:A -> '0'1624R:A: outward } 0 12 {'0'1625R:U -> '0'1626R:A: adjacent_5p } 0 13 {'0'1626R:A -> '0'1625R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 2 . 4 1 1 . 6 . . 2 3 7 . 8 10 3 . . 9 . 12 4 5 . 11 13 . [GraphModel] [Vertices] 0 '0'1578R:C 0 1 '0'1579R:C 0 2 '0'1616R:A 0 3 '0'1617R:C 0 4 '0'1618R:G 0 [Edges] 0 {'0'1578R:C -> '0'1579R:C: adjacent_5p upward } 0 1 {'0'1579R:C -> '0'1578R:C: adjacent_3p downward } 0 2 {'0'1578R:C -> '0'1618R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1618R:G -> '0'1578R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1579R:C -> '0'1616R:A: pairing antiparallel trans XXV Ww/Hh } 0 5 {'0'1616R:A -> '0'1579R:C: pairing antiparallel trans XXV Hh/Ww } 0 6 {'0'1616R:A -> '0'1617R:C: adjacent_5p } 0 7 {'0'1617R:C -> '0'1616R:A: adjacent_3p } 0 8 {'0'1616R:A -> '0'1618R:G: upward } 0 9 {'0'1618R:G -> '0'1616R:A: downward } 0 10 {'0'1617R:C -> '0'1618R:G: adjacent_5p } 0 11 {'0'1618R:G -> '0'1617R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'1745R:G 0 1 '0'1746R:A 0 2 '0'2032R:U 0 3 '0'2033R:G 0 4 '0'2034R:U 0 [Edges] 0 {'0'1745R:G -> '0'1746R:A: adjacent_5p } 0 1 {'0'1746R:A -> '0'1745R:G: adjacent_3p } 0 2 {'0'1745R:G -> '0'2034R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 3 {'0'2034R:U -> '0'1745R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 4 {'0'1746R:A -> '0'2032R:U: pairing antiparallel trans XXIV Hh/Ws } 0 5 {'0'2032R:U -> '0'1746R:A: pairing antiparallel trans XXIV Ws/Hh } 0 6 {'0'1746R:A -> '0'2034R:U: outward } 0 7 {'0'2034R:U -> '0'1746R:A: outward } 0 8 {'0'2032R:U -> '0'2033R:G: adjacent_5p } 0 9 {'0'2033R:G -> '0'2032R:U: adjacent_3p } 0 10 {'0'2033R:G -> '0'2034R:U: adjacent_5p } 0 11 {'0'2034R:U -> '0'2033R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . 6 2 . 5 . 8 . 3 . . 9 . 10 4 3 7 . 11 . [GraphModel] [Vertices] 0 '0'1793R:C 0 1 '0'1794R:G 0 2 '0'1797R:A 0 3 '0'1798R:C 0 4 '0'1799R:G 0 [Edges] 0 {'0'1793R:C -> '0'1794R:G: adjacent_5p upward } 0 1 {'0'1794R:G -> '0'1793R:C: adjacent_3p downward } 0 2 {'0'1793R:C -> '0'1799R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1799R:G -> '0'1793R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1794R:G -> '0'1797R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 5 {'0'1797R:A -> '0'1794R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 6 {'0'1797R:A -> '0'1798R:C: adjacent_5p } 0 7 {'0'1798R:C -> '0'1797R:A: adjacent_3p } 0 8 {'0'1797R:A -> '0'1799R:G: upward } 0 9 {'0'1799R:G -> '0'1797R:A: downward } 0 10 {'0'1798R:C -> '0'1799R:G: adjacent_5p } 0 11 {'0'1799R:G -> '0'1798R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'1826R:C 0 1 '0'1827R:G 0 2 '0'2021R:C 0 3 '0'2022R:A 0 4 '0'2023R:G 0 [Edges] 0 {'0'1826R:C -> '0'1827R:G: adjacent_5p upward } 0 1 {'0'1827R:G -> '0'1826R:C: adjacent_3p downward } 0 2 {'0'1826R:C -> '0'2023R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2023R:G -> '0'1826R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1827R:G -> '0'2021R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'2021R:C -> '0'1827R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'1827R:G -> '0'2023R:G: outward } 0 7 {'0'2023R:G -> '0'1827R:G: outward } 0 8 {'0'2021R:C -> '0'2022R:A: adjacent_5p } 0 9 {'0'2022R:A -> '0'2021R:C: adjacent_3p } 0 10 {'0'2022R:A -> '0'2023R:G: adjacent_5p } 0 11 {'0'2023R:G -> '0'2022R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . 6 2 . 5 . 8 . 3 . . 9 . 10 4 3 7 . 11 . [GraphModel] [Vertices] 0 '0'1828R:G 0 1 '0'1829R:A 0 2 '0'2018R:A 0 3 '0'2019R:A 0 4 '0'2020R:C 0 [Edges] 0 {'0'1828R:G -> '0'1829R:A: adjacent_5p } 0 1 {'0'1829R:A -> '0'1828R:G: adjacent_3p } 0 2 {'0'1828R:G -> '0'2020R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2020R:C -> '0'1828R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1829R:A -> '0'2018R:A: pairing parallel trans one_hbond 39 Ss/Ww } 0 5 {'0'2018R:A -> '0'1829R:A: pairing parallel trans one_hbond 39 Ww/Ss } 0 6 {'0'2018R:A -> '0'2019R:A: adjacent_5p upward } 0 7 {'0'2019R:A -> '0'2018R:A: adjacent_3p downward } 0 8 {'0'2019R:A -> '0'2020R:C: adjacent_5p upward } 0 9 {'0'2020R:C -> '0'2019R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'1833R:U 0 1 '0'1834R:C 0 2 '0'1841R:C 0 3 '0'1842R:A 0 4 '0'1843R:A 0 [Edges] 0 {'0'1833R:U -> '0'1834R:C: adjacent_5p } 0 1 {'0'1834R:C -> '0'1833R:U: adjacent_3p } 0 2 {'0'1833R:U -> '0'1843R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'1843R:A -> '0'1833R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'1834R:C -> '0'1841R:C: pairing antiparallel trans 135 Ww/Hh } 0 5 {'0'1841R:C -> '0'1834R:C: pairing antiparallel trans 135 Hh/Ww } 0 6 {'0'1841R:C -> '0'1842R:A: adjacent_5p } 0 7 {'0'1842R:A -> '0'1841R:C: adjacent_3p } 0 8 {'0'1841R:C -> '0'1843R:A: upward } 0 9 {'0'1843R:A -> '0'1841R:C: downward } 0 10 {'0'1842R:A -> '0'1843R:A: adjacent_5p } 0 11 {'0'1843R:A -> '0'1842R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'1889R:C 0 1 '0'1890R:U 0 2 '0'2011R:A 0 3 '0'2012R:U 0 4 '0'2013R:G 0 [Edges] 0 {'0'1889R:C -> '0'1890R:U: adjacent_5p upward } 0 1 {'0'1890R:U -> '0'1889R:C: adjacent_3p downward } 0 2 {'0'1889R:C -> '0'2013R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2013R:G -> '0'1889R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1890R:U -> '0'2011R:A: pairing parallel cis XXIII Ww/Hh } 0 5 {'0'2011R:A -> '0'1890R:U: pairing parallel cis XXIII Hh/Ww } 0 6 {'0'2011R:A -> '0'2012R:U: adjacent_5p } 0 7 {'0'2012R:U -> '0'2011R:A: adjacent_3p } 0 8 {'0'2011R:A -> '0'2013R:G: outward } 0 9 {'0'2013R:G -> '0'2011R:A: outward } 0 10 {'0'2012R:U -> '0'2013R:G: adjacent_5p } 0 11 {'0'2013R:G -> '0'2012R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'1893R:C 0 1 '0'1894R:C 0 2 '0'1942R:A 0 3 '0'1943R:C 0 4 '0'1944R:G 0 [Edges] 0 {'0'1893R:C -> '0'1894R:C: adjacent_5p } 0 1 {'0'1894R:C -> '0'1893R:C: adjacent_3p } 0 2 {'0'1893R:C -> '0'1944R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'1944R:G -> '0'1893R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'1894R:C -> '0'1942R:A: pairing antiparallel trans XXV Ww/Hw } 0 5 {'0'1942R:A -> '0'1894R:C: pairing antiparallel trans XXV Hw/Ww } 0 6 {'0'1942R:A -> '0'1943R:C: adjacent_5p upward } 0 7 {'0'1943R:C -> '0'1942R:A: adjacent_3p downward } 0 8 {'0'1943R:C -> '0'1944R:G: adjacent_5p upward } 0 9 {'0'1944R:G -> '0'1943R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'2054R:A 0 1 '0'2055R:A 0 2 '0'1369R:A 0 3 '0'1370R:G 0 4 '0'1371R:U 0 [Edges] 0 {'0'1369R:A -> '0'1370R:G: adjacent_5p } 0 1 {'0'1370R:G -> '0'1369R:A: adjacent_3p } 0 2 {'0'1369R:A -> '0'1371R:U: outward } 0 3 {'0'1371R:U -> '0'1369R:A: outward } 0 4 {'0'1369R:A -> '0'2055R:A: pairing parallel trans II Hh/Hh } 0 5 {'0'2055R:A -> '0'1369R:A: pairing parallel trans II Hh/Hh } 0 6 {'0'1370R:G -> '0'1371R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {'0'1371R:U -> '0'1370R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {'0'1371R:U -> '0'2054R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {'0'2054R:A -> '0'1371R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {'0'2054R:A -> '0'2055R:A: adjacent_5p upward } 0 11 {'0'2055R:A -> '0'2054R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 '0'2063R:U 0 1 '0'2064R:U 0 2 '0'2081R:A 0 3 '0'2082R:G 0 4 '0'2083R:A 0 [Edges] 0 {'0'2063R:U -> '0'2064R:U: adjacent_5p } 0 1 {'0'2064R:U -> '0'2063R:U: adjacent_3p } 0 2 {'0'2063R:U -> '0'2083R:A: pairing antiparallel cis 43 Ww/Ss } 0 3 {'0'2083R:A -> '0'2063R:U: pairing antiparallel cis 43 Ss/Ww } 0 4 {'0'2064R:U -> '0'2081R:A: pairing antiparallel cis XX Ww/Ww } 0 5 {'0'2081R:A -> '0'2064R:U: pairing antiparallel cis XX Ww/Ww } 0 6 {'0'2081R:A -> '0'2082R:G: adjacent_5p upward } 0 7 {'0'2082R:G -> '0'2081R:A: adjacent_3p downward } 0 8 {'0'2082R:G -> '0'2083R:A: adjacent_5p upward } 0 9 {'0'2083R:A -> '0'2082R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'2122R:C 0 1 '0'2123R:A 0 2 '0'2270R:G 0 3 '0'2271R:G 0 4 '0'2272R:G 0 [Edges] 0 {'0'2122R:C -> '0'2123R:A: adjacent_5p } 0 1 {'0'2123R:A -> '0'2122R:C: adjacent_3p } 0 2 {'0'2122R:C -> '0'2272R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2272R:G -> '0'2122R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2123R:A -> '0'2270R:G: pairing antiparallel trans XI Hh/Ss } 0 5 {'0'2270R:G -> '0'2123R:A: pairing antiparallel trans XI Ss/Hh } 0 6 {'0'2123R:A -> '0'2272R:G: outward } 0 7 {'0'2272R:G -> '0'2123R:A: outward } 0 8 {'0'2270R:G -> '0'2271R:G: adjacent_5p } 0 9 {'0'2271R:G -> '0'2270R:G: adjacent_3p } 0 10 {'0'2271R:G -> '0'2272R:G: adjacent_5p } 0 11 {'0'2272R:G -> '0'2271R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . 6 2 . 5 . 8 . 3 . . 9 . 10 4 3 7 . 11 . [GraphModel] [Vertices] 0 '0'2257R:G 0 1 '0'2258R:A 0 2 '0'2242R:U 0 3 '0'2243R:C 0 4 '0'2244R:A 0 [Edges] 0 {'0'2242R:U -> '0'2243R:C: adjacent_5p } 0 1 {'0'2243R:C -> '0'2242R:U: adjacent_3p } 0 2 {'0'2242R:U -> '0'2257R:G: inward } 0 3 {'0'2257R:G -> '0'2242R:U: inward } 0 4 {'0'2242R:U -> '0'2258R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {'0'2258R:A -> '0'2242R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {'0'2243R:C -> '0'2244R:A: adjacent_5p } 0 7 {'0'2244R:A -> '0'2243R:C: adjacent_3p } 0 8 {'0'2244R:A -> '0'2257R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {'0'2257R:G -> '0'2244R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {'0'2244R:A -> '0'2258R:A: outward } 0 11 {'0'2258R:A -> '0'2244R:A: outward } 0 12 {'0'2257R:G -> '0'2258R:A: adjacent_5p } 0 13 {'0'2258R:A -> '0'2257R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 12 3 . 9 1 13 . 5 . 11 2 2 4 . 0 . 3 . . 1 . 6 4 8 10 . 7 . [GraphModel] [Vertices] 0 '0'2279R:G 0 1 '0'2280R:A 0 2 '0'2290R:U 0 3 '0'2291R:A 0 4 '0'2292R:C 0 [Edges] 0 {'0'2279R:G -> '0'2280R:A: adjacent_5p upward } 0 1 {'0'2280R:A -> '0'2279R:G: adjacent_3p downward } 0 2 {'0'2279R:G -> '0'2292R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2292R:C -> '0'2279R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2280R:A -> '0'2290R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {'0'2290R:U -> '0'2280R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {'0'2280R:A -> '0'2292R:C: outward } 0 7 {'0'2292R:C -> '0'2280R:A: outward } 0 8 {'0'2290R:U -> '0'2291R:A: adjacent_5p } 0 9 {'0'2291R:A -> '0'2290R:U: adjacent_3p } 0 10 {'0'2291R:A -> '0'2292R:C: adjacent_5p } 0 11 {'0'2292R:C -> '0'2291R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . 6 2 . 5 . 8 . 3 . . 9 . 10 4 3 7 . 11 . [GraphModel] [Vertices] 0 '0'2298R:C 0 1 '0'2299R:G 0 2 '0'2308R:U 0 3 '0'2309R:C 0 4 '0'2310R:G 0 [Edges] 0 {'0'2298R:C -> '0'2299R:G: adjacent_5p upward } 0 1 {'0'2299R:G -> '0'2298R:C: adjacent_3p downward } 0 2 {'0'2298R:C -> '0'2310R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2310R:G -> '0'2298R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2299R:G -> '0'2308R:U: pairing antiparallel trans one_hbond 88 Sw/Hw } 0 5 {'0'2308R:U -> '0'2299R:G: pairing antiparallel trans one_hbond 88 Hw/Sw } 0 6 {'0'2308R:U -> '0'2309R:C: adjacent_5p } 0 7 {'0'2309R:C -> '0'2308R:U: adjacent_3p } 0 8 {'0'2309R:C -> '0'2310R:G: adjacent_5p } 0 9 {'0'2310R:G -> '0'2309R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'2329R:C 0 1 '0'2330R:U 0 2 '0'2369R:A 0 3 '0'2370R:A 0 4 '0'2371R:G 0 [Edges] 0 {'0'2329R:C -> '0'2330R:U: adjacent_5p } 0 1 {'0'2330R:U -> '0'2329R:C: adjacent_3p } 0 2 {'0'2329R:C -> '0'2371R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2371R:G -> '0'2329R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2330R:U -> '0'2369R:A: pairing antiparallel trans XXIV Ww/Hh } 0 5 {'0'2369R:A -> '0'2330R:U: pairing antiparallel trans XXIV Hh/Ww } 0 6 {'0'2369R:A -> '0'2370R:A: adjacent_5p } 0 7 {'0'2370R:A -> '0'2369R:A: adjacent_3p } 0 8 {'0'2369R:A -> '0'2371R:G: upward } 0 9 {'0'2371R:G -> '0'2369R:A: downward } 0 10 {'0'2370R:A -> '0'2371R:G: adjacent_5p } 0 11 {'0'2371R:G -> '0'2370R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'2377R:U 0 1 '0'2378R:U 0 2 '0'2321R:A 0 3 '0'2322R:U 0 4 '0'2323R:G 0 [Edges] 0 {'0'2321R:A -> '0'2322R:U: adjacent_5p } 0 1 {'0'2322R:U -> '0'2321R:A: adjacent_3p } 0 2 {'0'2321R:A -> '0'2323R:G: outward } 0 3 {'0'2323R:G -> '0'2321R:A: outward } 0 4 {'0'2321R:A -> '0'2378R:U: pairing parallel trans XXI Ww/Ww } 0 5 {'0'2378R:U -> '0'2321R:A: pairing parallel trans XXI Ww/Ww } 0 6 {'0'2322R:U -> '0'2323R:G: adjacent_5p } 0 7 {'0'2323R:G -> '0'2322R:U: adjacent_3p } 0 8 {'0'2323R:G -> '0'2377R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {'0'2377R:U -> '0'2323R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {'0'2377R:U -> '0'2378R:U: adjacent_5p } 0 11 {'0'2378R:U -> '0'2377R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 '0'2407R:G 0 1 '0'2408R:A 0 2 '0'2379R:G 0 3 '0'2380R:A 0 4 '0'2381R:C 0 [Edges] 0 {'0'2379R:G -> '0'2380R:A: adjacent_5p } 0 1 {'0'2380R:A -> '0'2379R:G: adjacent_3p } 0 2 {'0'2379R:G -> '0'2381R:C: outward } 0 3 {'0'2381R:C -> '0'2379R:G: outward } 0 4 {'0'2379R:G -> '0'2408R:A: pairing parallel cis one_hbond Hw/Wh } 0 5 {'0'2408R:A -> '0'2379R:G: pairing parallel cis one_hbond Wh/Hw } 0 6 {'0'2380R:A -> '0'2381R:C: adjacent_5p } 0 7 {'0'2381R:C -> '0'2380R:A: adjacent_3p } 0 8 {'0'2381R:C -> '0'2407R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'2407R:G -> '0'2381R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'2407R:G -> '0'2408R:A: adjacent_5p upward } 0 11 {'0'2408R:A -> '0'2407R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 '0'2454R:C 0 1 '0'2455R:A 0 2 '0'2436R:U 0 3 '0'2437R:A 0 4 '0'2438R:G 0 [Edges] 0 {'0'2436R:U -> '0'2437R:A: adjacent_5p upward } 0 1 {'0'2437R:A -> '0'2436R:U: adjacent_3p downward } 0 2 {'0'2436R:U -> '0'2455R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {'0'2455R:A -> '0'2436R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {'0'2437R:A -> '0'2438R:G: adjacent_5p upward } 0 5 {'0'2438R:G -> '0'2437R:A: adjacent_3p downward } 0 6 {'0'2437R:A -> '0'2455R:A: outward } 0 7 {'0'2455R:A -> '0'2437R:A: outward } 0 8 {'0'2438R:G -> '0'2454R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'2454R:C -> '0'2438R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'2454R:C -> '0'2455R:A: adjacent_5p } 0 11 {'0'2455R:A -> '0'2454R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 '0'2459R:G 0 1 '0'2460R:A 0 2 '0'2430R:A 0 3 '0'2431R:C 0 4 '0'2432R:C 0 [Edges] 0 {'0'2430R:A -> '0'2431R:C: adjacent_5p upward } 0 1 {'0'2431R:C -> '0'2430R:A: adjacent_3p downward } 0 2 {'0'2430R:A -> '0'2460R:A: pairing antiparallel trans one_hbond Hh/Ww } 0 3 {'0'2460R:A -> '0'2430R:A: pairing antiparallel trans one_hbond Ww/Hh } 0 4 {'0'2431R:C -> '0'2432R:C: adjacent_5p upward } 0 5 {'0'2432R:C -> '0'2431R:C: adjacent_3p downward } 0 6 {'0'2432R:C -> '0'2459R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {'0'2459R:G -> '0'2432R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {'0'2459R:G -> '0'2460R:A: adjacent_5p } 0 9 {'0'2460R:A -> '0'2459R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 '0'2477R:C 0 1 '0'2478R:U 0 2 '0'2108R:A 0 3 '0'2109R:U 0 4 '0'2110R:G 0 [Edges] 0 {'0'2108R:A -> '0'2109R:U: adjacent_5p } 0 1 {'0'2109R:U -> '0'2108R:A: adjacent_3p } 0 2 {'0'2108R:A -> '0'2110R:G: upward } 0 3 {'0'2110R:G -> '0'2108R:A: downward } 0 4 {'0'2108R:A -> '0'2478R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {'0'2478R:U -> '0'2108R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {'0'2109R:U -> '0'2110R:G: adjacent_5p } 0 7 {'0'2110R:G -> '0'2109R:U: adjacent_3p } 0 8 {'0'2110R:G -> '0'2477R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'2477R:C -> '0'2110R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'2477R:C -> '0'2478R:U: adjacent_5p } 0 11 {'0'2478R:U -> '0'2477R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 '0'2484R:U 0 1 '0'2485R:A 0 2 '0'2104R:C 0 3 '0'2105R:C 0 4 '0'2106R:C 0 [Edges] 0 {'0'2104R:C -> '0'2105R:C: adjacent_5p upward } 0 1 {'0'2105R:C -> '0'2104R:C: adjacent_3p downward } 0 2 {'0'2104R:C -> '0'2485R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 3 {'0'2485R:A -> '0'2104R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 4 {'0'2105R:C -> '0'2106R:C: adjacent_5p upward } 0 5 {'0'2106R:C -> '0'2105R:C: adjacent_3p downward } 0 6 {'0'2106R:C -> '0'2484R:U: pairing antiparallel cis one_hbond Ss/Ww } 0 7 {'0'2484R:U -> '0'2106R:C: pairing antiparallel cis one_hbond Ww/Ss } 0 8 {'0'2484R:U -> '0'2485R:A: adjacent_5p } 0 9 {'0'2485R:A -> '0'2484R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 '0'2485R:A 0 1 '0'2486R:A 0 2 '0'2102R:G 0 3 '0'2103R:A 0 4 '0'2104R:C 0 [Edges] 0 {'0'2102R:G -> '0'2103R:A: adjacent_5p } 0 1 {'0'2103R:A -> '0'2102R:G: adjacent_3p } 0 2 {'0'2102R:G -> '0'2104R:C: upward } 0 3 {'0'2104R:C -> '0'2102R:G: downward } 0 4 {'0'2102R:G -> '0'2486R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 5 {'0'2486R:A -> '0'2102R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 6 {'0'2103R:A -> '0'2104R:C: adjacent_5p } 0 7 {'0'2104R:C -> '0'2103R:A: adjacent_3p } 0 8 {'0'2104R:C -> '0'2485R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 9 {'0'2485R:A -> '0'2104R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 10 {'0'2485R:A -> '0'2486R:A: adjacent_5p upward } 0 11 {'0'2486R:A -> '0'2485R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 '0'2489R:G 0 1 '0'2490R:A 0 2 '0'2531R:U 0 3 '0'2532R:A 0 4 '0'2533R:C 0 [Edges] 0 {'0'2489R:G -> '0'2490R:A: adjacent_5p upward } 0 1 {'0'2490R:A -> '0'2489R:G: adjacent_3p downward } 0 2 {'0'2489R:G -> '0'2533R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2533R:C -> '0'2489R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2490R:A -> '0'2531R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {'0'2531R:U -> '0'2490R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {'0'2531R:U -> '0'2532R:A: adjacent_5p upward } 0 7 {'0'2532R:A -> '0'2531R:U: adjacent_3p downward } 0 8 {'0'2532R:A -> '0'2533R:C: adjacent_5p } 0 9 {'0'2533R:C -> '0'2532R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'2527R:U 0 1 '0'2528R:U 0 2 '0'2493R:C 0 3 '0'2494R:G 0 4 '0'2495R:U 0 [Edges] 0 {'0'2493R:C -> '0'2494R:G: adjacent_5p pairing antiparallel cis one_hbond Hh/Hw } 0 1 {'0'2494R:G -> '0'2493R:C: adjacent_3p pairing antiparallel cis one_hbond Hw/Hh } 0 2 {'0'2493R:C -> '0'2528R:U: pairing parallel cis one_hbond Hh/Wh } 0 3 {'0'2528R:U -> '0'2493R:C: pairing parallel cis one_hbond Wh/Hh } 0 4 {'0'2494R:G -> '0'2495R:U: adjacent_5p upward } 0 5 {'0'2495R:U -> '0'2494R:G: adjacent_3p downward } 0 6 {'0'2494R:G -> '0'2528R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'2528R:U -> '0'2494R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'2495R:U -> '0'2527R:U: pairing antiparallel cis XVI Ws/Ww } 0 9 {'0'2527R:U -> '0'2495R:U: pairing antiparallel cis XVI Ww/Ws } 0 10 {'0'2527R:U -> '0'2528R:U: adjacent_5p upward } 0 11 {'0'2528R:U -> '0'2527R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 '0'2528R:U 0 1 '0'2529R:G 0 2 '0'2492R:U 0 3 '0'2493R:C 0 4 '0'2494R:G 0 [Edges] 0 {'0'2492R:U -> '0'2493R:C: adjacent_5p inward } 0 1 {'0'2493R:C -> '0'2492R:U: adjacent_3p inward } 0 2 {'0'2492R:U -> '0'2529R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {'0'2529R:G -> '0'2492R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {'0'2493R:C -> '0'2494R:G: adjacent_5p pairing antiparallel cis one_hbond Hh/Hw } 0 5 {'0'2494R:G -> '0'2493R:C: adjacent_3p pairing antiparallel cis one_hbond Hw/Hh } 0 6 {'0'2493R:C -> '0'2528R:U: pairing parallel cis one_hbond Hh/Wh } 0 7 {'0'2528R:U -> '0'2493R:C: pairing parallel cis one_hbond Wh/Hh } 0 8 {'0'2494R:G -> '0'2528R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {'0'2528R:U -> '0'2494R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {'0'2528R:U -> '0'2529R:G: adjacent_5p } 0 11 {'0'2529R:G -> '0'2528R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . 7 9 1 11 . 3 . . 2 . 2 . 0 . 3 6 . 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 '0'2542R:C 0 1 '0'2543R:G 0 2 '0'2615R:U 0 3 '0'2616R:G 0 4 '0'2617R:G 0 [Edges] 0 {'0'2542R:C -> '0'2543R:G: adjacent_5p upward } 0 1 {'0'2543R:G -> '0'2542R:C: adjacent_3p downward } 0 2 {'0'2542R:C -> '0'2617R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2617R:G -> '0'2542R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2543R:G -> '0'2615R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 5 {'0'2615R:U -> '0'2543R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 6 {'0'2615R:U -> '0'2616R:G: adjacent_5p inward } 0 7 {'0'2616R:G -> '0'2615R:U: adjacent_3p inward } 0 8 {'0'2616R:G -> '0'2617R:G: adjacent_5p } 0 9 {'0'2617R:G -> '0'2616R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'2622R:A 0 1 '0'2623R:G 0 2 '0'2641R:C 0 3 '0'2642R:G 0 4 '0'2643R:G 0 [Edges] 0 {'0'2622R:A -> '0'2623R:G: adjacent_5p } 0 1 {'0'2623R:G -> '0'2622R:A: adjacent_3p } 0 2 {'0'2622R:A -> '0'2643R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {'0'2643R:G -> '0'2622R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {'0'2623R:G -> '0'2641R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'2641R:C -> '0'2623R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'2623R:G -> '0'2642R:G: outward } 0 7 {'0'2642R:G -> '0'2623R:G: outward } 0 8 {'0'2641R:C -> '0'2642R:G: adjacent_5p upward } 0 9 {'0'2642R:G -> '0'2641R:C: adjacent_3p downward } 0 10 {'0'2642R:G -> '0'2643R:G: adjacent_5p upward } 0 11 {'0'2643R:G -> '0'2642R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 . 2 . 5 . 8 . 3 . 7 9 . 10 4 3 . . 11 . [GraphModel] [Vertices] 0 '0'2626R:C 0 1 '0'2627R:G 0 2 '0'2636R:C 0 3 '0'2637R:A 0 4 '0'2638R:G 0 [Edges] 0 {'0'2626R:C -> '0'2627R:G: adjacent_5p upward } 0 1 {'0'2627R:G -> '0'2626R:C: adjacent_3p downward } 0 2 {'0'2626R:C -> '0'2638R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2638R:G -> '0'2626R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2627R:G -> '0'2636R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'2636R:C -> '0'2627R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'2636R:C -> '0'2637R:A: adjacent_5p } 0 7 {'0'2637R:A -> '0'2636R:C: adjacent_3p } 0 8 {'0'2637R:A -> '0'2638R:G: adjacent_5p } 0 9 {'0'2638R:G -> '0'2637R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'2651R:C 0 1 '0'2652R:U 0 2 '0'2092R:G 0 3 '0'2093R:G 0 4 '0'2094R:G 0 [Edges] 0 {'0'2092R:G -> '0'2093R:G: adjacent_5p pairing parallel cis one_hbond Sw/Hw } 0 1 {'0'2093R:G -> '0'2092R:G: adjacent_3p pairing parallel cis one_hbond Hw/Sw } 0 2 {'0'2092R:G -> '0'2652R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 3 {'0'2652R:U -> '0'2092R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 4 {'0'2093R:G -> '0'2094R:G: adjacent_5p upward } 0 5 {'0'2094R:G -> '0'2093R:G: adjacent_3p downward } 0 6 {'0'2093R:G -> '0'2652R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {'0'2652R:U -> '0'2093R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {'0'2094R:G -> '0'2651R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'0'2651R:C -> '0'2094R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'0'2651R:C -> '0'2652R:U: adjacent_5p upward } 0 11 {'0'2652R:U -> '0'2651R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 '0'2652R:U 0 1 '0'2653R:A 0 2 '0'2091R:G 0 3 '0'2092R:G 0 4 '0'2093R:G 0 [Edges] 0 {'0'2091R:G -> '0'2092R:G: adjacent_5p upward } 0 1 {'0'2092R:G -> '0'2091R:G: adjacent_3p downward } 0 2 {'0'2091R:G -> '0'2653R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {'0'2653R:A -> '0'2091R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {'0'2092R:G -> '0'2093R:G: adjacent_5p pairing parallel cis one_hbond Sw/Hw } 0 5 {'0'2093R:G -> '0'2092R:G: adjacent_3p pairing parallel cis one_hbond Hw/Sw } 0 6 {'0'2092R:G -> '0'2652R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 7 {'0'2652R:U -> '0'2092R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 8 {'0'2093R:G -> '0'2652R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {'0'2652R:U -> '0'2093R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {'0'2652R:U -> '0'2653R:A: adjacent_5p upward } 0 11 {'0'2653R:A -> '0'2652R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . 7 9 1 11 . 3 . . 2 . 2 . 0 . 3 6 . 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 '0'2702R:A 0 1 '0'2703R:A 0 2 '0'2691R:A 0 3 '0'2692R:G 0 4 '0'2693R:U 0 [Edges] 0 {'0'2691R:A -> '0'2692R:G: adjacent_5p } 0 1 {'0'2692R:G -> '0'2691R:A: adjacent_3p } 0 2 {'0'2691R:A -> '0'2693R:U: outward } 0 3 {'0'2693R:U -> '0'2691R:A: outward } 0 4 {'0'2691R:A -> '0'2703R:A: pairing parallel trans II Hh/Hh } 0 5 {'0'2703R:A -> '0'2691R:A: pairing parallel trans II Hh/Hh } 0 6 {'0'2692R:G -> '0'2693R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {'0'2693R:U -> '0'2692R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {'0'2693R:U -> '0'2702R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {'0'2702R:A -> '0'2693R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {'0'2702R:A -> '0'2703R:A: adjacent_5p upward } 0 11 {'0'2703R:A -> '0'2702R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 '0'2717R:C 0 1 '0'2718R:C 0 2 '0'2761R:A 0 3 '0'2762R:C 0 4 '0'2763R:G 0 [Edges] 0 {'0'2717R:C -> '0'2718R:C: adjacent_5p } 0 1 {'0'2718R:C -> '0'2717R:C: adjacent_3p } 0 2 {'0'2717R:C -> '0'2763R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2763R:G -> '0'2717R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2718R:C -> '0'2761R:A: pairing antiparallel trans XXV Ww/Hw } 0 5 {'0'2761R:A -> '0'2718R:C: pairing antiparallel trans XXV Hw/Ww } 0 6 {'0'2761R:A -> '0'2762R:C: adjacent_5p } 0 7 {'0'2762R:C -> '0'2761R:A: adjacent_3p } 0 8 {'0'2761R:A -> '0'2763R:G: upward } 0 9 {'0'2763R:G -> '0'2761R:A: downward } 0 10 {'0'2762R:C -> '0'2763R:G: adjacent_5p } 0 11 {'0'2763R:G -> '0'2762R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'2720R:C 0 1 '0'2721R:U 0 2 '0'2761R:A 0 3 '0'2762R:C 0 4 '0'2763R:G 0 [Edges] 0 {'0'2720R:C -> '0'2721R:U: adjacent_5p upward } 0 1 {'0'2721R:U -> '0'2720R:C: adjacent_3p downward } 0 2 {'0'2720R:C -> '0'2763R:G: pairing antiparallel cis one_hbond 120 Wh/Ss } 0 3 {'0'2763R:G -> '0'2720R:C: pairing antiparallel cis one_hbond 120 Ss/Wh } 0 4 {'0'2721R:U -> '0'2761R:A: pairing antiparallel cis XX Ww/Ww } 0 5 {'0'2761R:A -> '0'2721R:U: pairing antiparallel cis XX Ww/Ww } 0 6 {'0'2761R:A -> '0'2762R:C: adjacent_5p } 0 7 {'0'2762R:C -> '0'2761R:A: adjacent_3p } 0 8 {'0'2761R:A -> '0'2763R:G: upward } 0 9 {'0'2763R:G -> '0'2761R:A: downward } 0 10 {'0'2762R:C -> '0'2763R:G: adjacent_5p } 0 11 {'0'2763R:G -> '0'2762R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'2773R:G 0 1 '0'2774R:U 0 2 '0'2799R:A 0 3 '0'2800R:A 0 4 '0'2801R:A 0 [Edges] 0 {'0'2773R:G -> '0'2774R:U: adjacent_5p upward } 0 1 {'0'2774R:U -> '0'2773R:G: adjacent_3p downward } 0 2 {'0'2773R:G -> '0'2801R:A: pairing antiparallel cis VIII Ww/Ww } 0 3 {'0'2801R:A -> '0'2773R:G: pairing antiparallel cis VIII Ww/Ww } 0 4 {'0'2774R:U -> '0'2799R:A: pairing antiparallel trans XXIV Ww/Hh } 0 5 {'0'2799R:A -> '0'2774R:U: pairing antiparallel trans XXIV Hh/Ww } 0 6 {'0'2799R:A -> '0'2800R:A: adjacent_5p } 0 7 {'0'2800R:A -> '0'2799R:A: adjacent_3p } 0 8 {'0'2799R:A -> '0'2801R:A: upward } 0 9 {'0'2801R:A -> '0'2799R:A: downward } 0 10 {'0'2800R:A -> '0'2801R:A: adjacent_5p } 0 11 {'0'2801R:A -> '0'2800R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 '0'2798R:G 0 1 '0'2799R:A 0 2 '0'2774R:U 0 3 '0'2775R:A 0 4 '0'2776R:A 0 [Edges] 0 {'0'2774R:U -> '0'2775R:A: adjacent_5p } 0 1 {'0'2775R:A -> '0'2774R:U: adjacent_3p } 0 2 {'0'2774R:U -> '0'2799R:A: pairing antiparallel trans XXIV Ww/Hh } 0 3 {'0'2799R:A -> '0'2774R:U: pairing antiparallel trans XXIV Hh/Ww } 0 4 {'0'2775R:A -> '0'2776R:A: adjacent_5p upward } 0 5 {'0'2776R:A -> '0'2775R:A: adjacent_3p downward } 0 6 {'0'2775R:A -> '0'2799R:A: outward } 0 7 {'0'2799R:A -> '0'2775R:A: outward } 0 8 {'0'2776R:A -> '0'2798R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {'0'2798R:G -> '0'2776R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {'0'2798R:G -> '0'2799R:A: adjacent_5p } 0 11 {'0'2799R:A -> '0'2798R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 '0'2810R:G 0 1 '0'2811R:A 0 2 '0'2673R:U 0 3 '0'2674R:G 0 4 '0'2675R:A 0 [Edges] 0 {'0'2673R:U -> '0'2674R:G: adjacent_5p upward } 0 1 {'0'2674R:G -> '0'2673R:U: adjacent_3p downward } 0 2 {'0'2673R:U -> '0'2811R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {'0'2811R:A -> '0'2673R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {'0'2674R:G -> '0'2675R:A: adjacent_5p } 0 5 {'0'2675R:A -> '0'2674R:G: adjacent_3p } 0 6 {'0'2674R:G -> '0'2810R:G: inward } 0 7 {'0'2810R:G -> '0'2674R:G: inward } 0 8 {'0'2675R:A -> '0'2810R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {'0'2810R:G -> '0'2675R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {'0'2810R:G -> '0'2811R:A: adjacent_5p } 0 11 {'0'2811R:A -> '0'2810R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . 7 9 1 11 . 3 . . 2 . 2 . 0 . 3 6 . 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 '0'2843R:A 0 1 '0'2844R:C 0 2 '0'2836R:G 0 3 '0'2837R:U 0 4 '0'2838R:A 0 [Edges] 0 {'0'2836R:G -> '0'2837R:U: adjacent_5p } 0 1 {'0'2837R:U -> '0'2836R:G: adjacent_3p } 0 2 {'0'2836R:G -> '0'2838R:A: upward } 0 3 {'0'2838R:A -> '0'2836R:G: downward } 0 4 {'0'2836R:G -> '0'2844R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'2844R:C -> '0'2836R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'2837R:U -> '0'2838R:A: adjacent_5p } 0 7 {'0'2838R:A -> '0'2837R:U: adjacent_3p } 0 8 {'0'2838R:A -> '0'2843R:A: pairing antiparallel cis one_hbond 40 Ss/Wh } 0 9 {'0'2843R:A -> '0'2838R:A: pairing antiparallel cis one_hbond 40 Wh/Ss } 0 10 {'0'2843R:A -> '0'2844R:C: adjacent_5p upward } 0 11 {'0'2844R:C -> '0'2843R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 '0'2855R:G 0 1 '0'2856R:A 0 2 '0'2901R:C 0 3 '0'2902R:A 0 4 '0'2903R:C 0 [Edges] 0 {'0'2855R:G -> '0'2856R:A: adjacent_5p upward } 0 1 {'0'2856R:A -> '0'2855R:G: adjacent_3p downward } 0 2 {'0'2855R:G -> '0'2903R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2903R:C -> '0'2855R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2856R:A -> '0'2901R:C: pairing antiparallel cis one_hbond 78 Wh/Ws } 0 5 {'0'2901R:C -> '0'2856R:A: pairing antiparallel cis one_hbond 78 Ws/Wh } 0 6 {'0'2901R:C -> '0'2902R:A: adjacent_5p } 0 7 {'0'2902R:A -> '0'2901R:C: adjacent_3p } 0 8 {'0'2902R:A -> '0'2903R:C: adjacent_5p } 0 9 {'0'2903R:C -> '0'2902R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'2860R:G 0 1 '0'2861R:G 0 2 '0'2895R:C 0 3 '0'2896R:A 0 4 '0'2897R:C 0 [Edges] 0 {'0'2860R:G -> '0'2861R:G: adjacent_5p upward } 0 1 {'0'2861R:G -> '0'2860R:G: adjacent_3p downward } 0 2 {'0'2860R:G -> '0'2897R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'0'2897R:C -> '0'2860R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'0'2861R:G -> '0'2895R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'0'2895R:C -> '0'2861R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'0'2895R:C -> '0'2896R:A: adjacent_5p } 0 7 {'0'2896R:A -> '0'2895R:C: adjacent_3p } 0 8 {'0'2896R:A -> '0'2897R:C: adjacent_5p } 0 9 {'0'2897R:C -> '0'2896R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '0'2905R:A 0 1 '0'2906R:A 0 2 '0'2851R:G 0 3 '0'2852R:A 0 4 '0'2853R:U 0 [Edges] 0 {'0'2851R:G -> '0'2852R:A: adjacent_5p } 0 1 {'0'2852R:A -> '0'2851R:G: adjacent_3p } 0 2 {'0'2851R:G -> '0'2906R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 3 {'0'2906R:A -> '0'2851R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 4 {'0'2852R:A -> '0'2853R:U: adjacent_5p } 0 5 {'0'2853R:U -> '0'2852R:A: adjacent_3p } 0 6 {'0'2853R:U -> '0'2905R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {'0'2905R:A -> '0'2853R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {'0'2853R:U -> '0'2906R:A: outward } 0 9 {'0'2906R:A -> '0'2853R:U: outward } 0 10 {'0'2905R:A -> '0'2906R:A: adjacent_5p } 0 11 {'0'2906R:A -> '0'2905R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 7 1 11 . 3 . 9 2 . 2 . 0 . 3 . . 1 . 4 4 6 8 . 5 . [GraphModel] [Vertices] 0 '9'3015R:C 0 1 '9'3016R:G 0 2 '9'3064R:C 0 3 '9'3065R:A 0 4 '9'3066R:G 0 [Edges] 0 {'9'3015R:C -> '9'3016R:G: adjacent_5p upward } 0 1 {'9'3016R:G -> '9'3015R:C: adjacent_3p downward } 0 2 {'9'3015R:C -> '9'3066R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3066R:G -> '9'3015R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3016R:G -> '9'3064R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'9'3064R:C -> '9'3016R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'9'3064R:C -> '9'3065R:A: adjacent_5p } 0 7 {'9'3065R:A -> '9'3064R:C: adjacent_3p } 0 8 {'9'3065R:A -> '9'3066R:G: adjacent_5p } 0 9 {'9'3066R:G -> '9'3065R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 '9'3095R:C 0 1 '9'3096R:C 0 2 '9'3086R:G 0 3 '9'3087R:U 0 4 '9'3088R:G 0 [Edges] 0 {'9'3086R:G -> '9'3087R:U: adjacent_5p } 0 1 {'9'3087R:U -> '9'3086R:G: adjacent_3p } 0 2 {'9'3086R:G -> '9'3096R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {'9'3096R:C -> '9'3086R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {'9'3087R:U -> '9'3088R:G: adjacent_5p } 0 5 {'9'3088R:G -> '9'3087R:U: adjacent_3p } 0 6 {'9'3088R:G -> '9'3095R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {'9'3095R:C -> '9'3088R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {'9'3095R:C -> '9'3096R:C: adjacent_5p upward } 0 9 {'9'3096R:C -> '9'3095R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 '9'3103R:A 0 1 '9'3104R:A 0 2 '9'3077R:A 0 3 '9'3078R:G 0 4 '9'3079R:U 0 [Edges] 0 {'9'3077R:A -> '9'3078R:G: adjacent_5p } 0 1 {'9'3078R:G -> '9'3077R:A: adjacent_3p } 0 2 {'9'3077R:A -> '9'3079R:U: outward } 0 3 {'9'3079R:U -> '9'3077R:A: outward } 0 4 {'9'3077R:A -> '9'3104R:A: pairing parallel trans II Hh/Hh } 0 5 {'9'3104R:A -> '9'3077R:A: pairing parallel trans II Hh/Hh } 0 6 {'9'3078R:G -> '9'3079R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 7 {'9'3079R:U -> '9'3078R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 8 {'9'3079R:U -> '9'3103R:A: pairing antiparallel trans XXIV Ww/Hh } 0 9 {'9'3103R:A -> '9'3079R:U: pairing antiparallel trans XXIV Hh/Ww } 0 10 {'9'3103R:A -> '9'3104R:A: adjacent_5p upward } 0 11 {'9'3104R:A -> '9'3103R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 A9R:C 0 1 A10R:C 0 2 A22R:A 0 3 A23R:U 0 4 A24R:G 0 [Edges] 0 {A9R:C -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:C: adjacent_3p downward } 0 2 {A9R:C -> A24R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A24R:G -> A9R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A10R:C -> A22R:A: pairing antiparallel cis one_hbond 75 Ww/Wh } 0 5 {A22R:A -> A10R:C: pairing antiparallel cis one_hbond 75 Wh/Ww } 0 6 {A22R:A -> A23R:U: adjacent_5p upward } 0 7 {A23R:U -> A22R:A: adjacent_3p downward } 0 8 {A23R:U -> A24R:G: adjacent_5p upward } 0 9 {A24R:G -> A23R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A13R:G 0 1 A14R:G 0 2 A37R:U 0 3 A38R:A 0 4 A39R:C 0 [Edges] 0 {A13R:G -> A14R:G: adjacent_5p upward } 0 1 {A14R:G -> A13R:G: adjacent_3p downward } 0 2 {A13R:G -> A39R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A39R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A14R:G -> A37R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 5 {A37R:U -> A14R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 6 {A14R:G -> A39R:C: outward } 0 7 {A39R:C -> A14R:G: outward } 0 8 {A37R:U -> A38R:A: adjacent_5p upward } 0 9 {A38R:A -> A37R:U: adjacent_3p downward } 0 10 {A38R:A -> A39R:C: adjacent_5p pairing parallel cis one_hbond Ss/Hw } 0 11 {A39R:C -> A38R:A: adjacent_3p pairing parallel cis one_hbond Hw/Ss } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . 6 2 . 5 . 8 . 3 . . 9 . 10 4 3 7 . 11 . [GraphModel] [Vertices] 0 A17R:A 0 1 A18R:C 0 2 A32R:G 0 3 A33R:A 0 4 A34R:G 0 [Edges] 0 {A17R:A -> A18R:C: adjacent_5p upward } 0 1 {A18R:C -> A17R:A: adjacent_3p downward } 0 2 {A17R:A -> A34R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {A34R:G -> A17R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A18R:C -> A32R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A32R:G -> A18R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A32R:G -> A33R:A: adjacent_5p } 0 7 {A33R:A -> A32R:G: adjacent_3p } 0 8 {A32R:G -> A34R:G: upward } 0 9 {A34R:G -> A32R:G: downward } 0 10 {A33R:A -> A34R:G: adjacent_5p } 0 11 {A34R:G -> A33R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . MOLECULE: [GraphModel] [Vertices] 0 A12R:U 0 1 A13R:U 0 2 A20R:U 0 3 A21R:G 0 4 A22R:G 0 [Edges] 0 {A12R:U -> A13R:U: adjacent_5p } 0 1 {A13R:U -> A12R:U: adjacent_3p } 0 2 {A12R:U -> A22R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {A22R:G -> A12R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {A13R:U -> A20R:U: pairing antiparallel trans one_hbond 81 Hw/Ww } 0 5 {A20R:U -> A13R:U: pairing antiparallel trans one_hbond 81 Ww/Hw } 0 6 {A20R:U -> A21R:G: adjacent_5p upward } 0 7 {A21R:G -> A20R:U: adjacent_3p downward } 0 8 {A21R:G -> A22R:G: adjacent_5p upward } 0 9 {A22R:G -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 A26R:A 0 1 A27R:G 0 2 A556R:C 0 3 A557R:G 0 4 A558R:G 0 [Edges] 0 {A26R:A -> A27R:G: adjacent_5p } 0 1 {A27R:G -> A26R:A: adjacent_3p } 0 2 {A26R:A -> A558R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A558R:G -> A26R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A27R:G -> A556R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A556R:C -> A27R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A27R:G -> A557R:G: outward } 0 7 {A557R:G -> A27R:G: outward } 0 8 {A556R:C -> A557R:G: adjacent_5p upward } 0 9 {A557R:G -> A556R:C: adjacent_3p downward } 0 10 {A557R:G -> A558R:G: adjacent_5p upward } 0 11 {A558R:G -> A557R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 . 2 . 5 . 8 . 3 . 7 9 . 10 4 3 . . 11 . [GraphModel] [Vertices] 0 A44R:G 0 1 A45R:U 0 2 A396R:G 0 3 A397R:A 0 4 A398R:C 0 [Edges] 0 {A44R:G -> A45R:U: adjacent_5p upward } 0 1 {A45R:U -> A44R:G: adjacent_3p downward } 0 2 {A44R:G -> A398R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A398R:C -> A44R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A45R:U -> A396R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 5 {A396R:G -> A45R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 6 {A396R:G -> A397R:A: adjacent_5p } 0 7 {A397R:A -> A396R:G: adjacent_3p } 0 8 {A396R:G -> A398R:C: upward } 0 9 {A398R:C -> A396R:G: downward } 0 10 {A397R:A -> A398R:C: adjacent_5p } 0 11 {A398R:C -> A397R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A148R:G 0 1 A149R:A 0 2 A172R:A 0 3 A173R:U 0 4 A174R:C 0 [Edges] 0 {A148R:G -> A149R:A: adjacent_5p upward } 0 1 {A149R:A -> A148R:G: adjacent_3p downward } 0 2 {A148R:G -> A174R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A174R:C -> A148R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A149R:A -> A172R:A: pairing antiparallel trans V Ww/Hh } 0 5 {A172R:A -> A149R:A: pairing antiparallel trans V Hh/Ww } 0 6 {A172R:A -> A173R:U: adjacent_5p } 0 7 {A173R:U -> A172R:A: adjacent_3p } 0 8 {A172R:A -> A174R:C: upward } 0 9 {A174R:C -> A172R:A: downward } 0 10 {A173R:U -> A174R:C: adjacent_5p } 0 11 {A174R:C -> A173R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A242R:C 0 1 A243R:A 0 2 A282R:A 0 3 A283R:C 0 4 A284R:G 0 [Edges] 0 {A242R:C -> A243R:A: adjacent_5p } 0 1 {A243R:A -> A242R:C: adjacent_3p } 0 2 {A242R:C -> A284R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A284R:G -> A242R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A243R:A -> A282R:A: pairing antiparallel trans V Ww/Hh } 0 5 {A282R:A -> A243R:A: pairing antiparallel trans V Hh/Ww } 0 6 {A282R:A -> A283R:C: adjacent_5p upward } 0 7 {A283R:C -> A282R:A: adjacent_3p downward } 0 8 {A283R:C -> A284R:G: adjacent_5p } 0 9 {A284R:G -> A283R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 A245R:C 0 1 A246R:A 0 2 A281R:G 0 3 A282R:A 0 4 A283R:C 0 [Edges] 0 {A245R:C -> A246R:A: adjacent_5p } 0 1 {A246R:A -> A245R:C: adjacent_3p } 0 2 {A245R:C -> A283R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 3 {A283R:C -> A245R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 4 {A246R:A -> A281R:G: pairing antiparallel trans XI Hh/Ss } 0 5 {A281R:G -> A246R:A: pairing antiparallel trans XI Ss/Hh } 0 6 {A246R:A -> A282R:A: outward } 0 7 {A282R:A -> A246R:A: outward } 0 8 {A281R:G -> A282R:A: adjacent_5p } 0 9 {A282R:A -> A281R:G: adjacent_3p } 0 10 {A282R:A -> A283R:C: adjacent_5p upward } 0 11 {A283R:C -> A282R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 . 2 . 5 . 8 . 3 . 7 9 . 10 4 3 . . 11 . [GraphModel] [Vertices] 0 A259R:G 0 1 A260R:G 0 2 A265R:G 0 3 A266R:G 0 4 A267R:C 0 [Edges] 0 {A259R:G -> A260R:G: adjacent_5p upward } 0 1 {A260R:G -> A259R:G: adjacent_3p downward } 0 2 {A259R:G -> A267R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A267R:C -> A259R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A260R:G -> A265R:G: pairing antiparallel trans one_hbond 110 Bs/Hh } 0 5 {A265R:G -> A260R:G: pairing antiparallel trans one_hbond 110 Hh/Bs } 0 6 {A265R:G -> A266R:G: adjacent_5p } 0 7 {A266R:G -> A265R:G: adjacent_3p } 0 8 {A265R:G -> A267R:C: upward } 0 9 {A267R:C -> A265R:G: downward } 0 10 {A266R:G -> A267R:C: adjacent_5p } 0 11 {A267R:C -> A266R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A282R:A 0 1 A283R:C 0 2 A245R:C 0 3 A246R:A 0 4 A247R:G 0 [Edges] 0 {A245R:C -> A246R:A: adjacent_5p } 0 1 {A246R:A -> A245R:C: adjacent_3p } 0 2 {A245R:C -> A283R:C: pairing antiparallel cis one_hbond 131 Ww/Wh } 0 3 {A283R:C -> A245R:C: pairing antiparallel cis one_hbond 131 Wh/Ww } 0 4 {A246R:A -> A247R:G: adjacent_5p } 0 5 {A247R:G -> A246R:A: adjacent_3p } 0 6 {A246R:A -> A282R:A: outward } 0 7 {A282R:A -> A246R:A: outward } 0 8 {A247R:G -> A282R:A: pairing parallel trans one_hbond 57 Sw/Ss } 0 9 {A282R:A -> A247R:G: pairing parallel trans one_hbond 57 Ss/Sw } 0 10 {A282R:A -> A283R:C: adjacent_5p upward } 0 11 {A283R:C -> A282R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . 7 9 1 11 . 3 . . 2 . 2 . 0 . 3 6 . 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 A322R:C 0 1 A323R:U 0 2 A327R:A 0 3 A328R:C 0 4 A329R:A 0 [Edges] 0 {A322R:C -> A323R:U: adjacent_5p upward } 0 1 {A323R:U -> A322R:C: adjacent_3p downward } 0 2 {A322R:C -> A329R:A: pairing antiparallel trans XXV Ww/Hh } 0 3 {A329R:A -> A322R:C: pairing antiparallel trans XXV Hh/Ww } 0 4 {A323R:U -> A327R:A: pairing antiparallel trans XXIV Ww/Hh } 0 5 {A327R:A -> A323R:U: pairing antiparallel trans XXIV Hh/Ww } 0 6 {A327R:A -> A328R:C: adjacent_5p } 0 7 {A328R:C -> A327R:A: adjacent_3p } 0 8 {A327R:A -> A329R:A: upward } 0 9 {A329R:A -> A327R:A: downward } 0 10 {A328R:C -> A329R:A: adjacent_5p } 0 11 {A329R:A -> A328R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A356R:A 0 1 A357R:G 0 2 A54R:C 0 3 A55R:A 0 4 A56R:U 0 [Edges] 0 {A54R:C -> A55R:A: adjacent_5p } 0 1 {A55R:A -> A54R:C: adjacent_3p } 0 2 {A54R:C -> A357R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A357R:G -> A54R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A55R:A -> A56R:U: adjacent_5p upward } 0 5 {A56R:U -> A55R:A: adjacent_3p downward } 0 6 {A55R:A -> A357R:G: pairing antiparallel trans XI Hh/Ss } 0 7 {A357R:G -> A55R:A: pairing antiparallel trans XI Ss/Hh } 0 8 {A56R:U -> A356R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {A356R:A -> A56R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {A356R:A -> A357R:G: adjacent_5p upward } 0 11 {A357R:G -> A356R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 A357R:G 0 1 A358R:U 0 2 A53R:A 0 3 A54R:C 0 4 A55R:A 0 [Edges] 0 {A53R:A -> A54R:C: adjacent_5p upward } 0 1 {A54R:C -> A53R:A: adjacent_3p downward } 0 2 {A53R:A -> A358R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A358R:U -> A53R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A54R:C -> A55R:A: adjacent_5p } 0 5 {A55R:A -> A54R:C: adjacent_3p } 0 6 {A54R:C -> A357R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A357R:G -> A54R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A55R:A -> A357R:G: pairing antiparallel trans XI Hh/Ss } 0 9 {A357R:G -> A55R:A: pairing antiparallel trans XI Ss/Hh } 0 10 {A357R:G -> A358R:U: adjacent_5p upward } 0 11 {A358R:U -> A357R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . 7 9 1 11 . 3 . . 2 . 2 . 0 . 3 6 . 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 A375R:U 0 1 A376R:G 0 2 A387R:U 0 3 A388R:G 0 4 A389R:A 0 [Edges] 0 {A375R:U -> A376R:G: adjacent_5p upward } 0 1 {A376R:G -> A375R:U: adjacent_3p downward } 0 2 {A375R:U -> A389R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A389R:A -> A375R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A376R:G -> A387R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 5 {A387R:U -> A376R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 6 {A376R:G -> A389R:A: outward } 0 7 {A389R:A -> A376R:G: outward } 0 8 {A387R:U -> A388R:G: adjacent_5p } 0 9 {A388R:G -> A387R:U: adjacent_3p } 0 10 {A388R:G -> A389R:A: adjacent_5p } 0 11 {A389R:A -> A388R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . 6 2 . 5 . 8 . 3 . . 9 . 10 4 3 7 . 11 . [GraphModel] [Vertices] 0 A392R:G 0 1 A393R:A 0 2 A367R:U 0 3 A368R:U 0 4 A369R:C 0 [Edges] 0 {A367R:U -> A368R:U: adjacent_5p } 0 1 {A368R:U -> A367R:U: adjacent_3p } 0 2 {A367R:U -> A393R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A393R:A -> A367R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A368R:U -> A369R:C: adjacent_5p } 0 5 {A369R:C -> A368R:U: adjacent_3p } 0 6 {A369R:C -> A392R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A392R:G -> A369R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A392R:G -> A393R:A: adjacent_5p upward } 0 9 {A393R:A -> A392R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 A438R:G 0 1 A439R:A 0 2 A495R:U 0 3 A496R:A 0 4 A497R:A 0 [Edges] 0 {A438R:G -> A439R:A: adjacent_5p } 0 1 {A439R:A -> A438R:G: adjacent_3p } 0 2 {A438R:G -> A495R:U: inward } 0 3 {A495R:U -> A438R:G: inward } 0 4 {A438R:G -> A497R:A: pairing antiparallel trans one_hbond Ss/Hh } 0 5 {A497R:A -> A438R:G: pairing antiparallel trans one_hbond Hh/Ss } 0 6 {A439R:A -> A495R:U: pairing antiparallel trans XXIV Hh/Ww } 0 7 {A495R:U -> A439R:A: pairing antiparallel trans XXIV Ww/Hh } 0 8 {A439R:A -> A497R:A: outward } 0 9 {A497R:A -> A439R:A: outward } 0 10 {A495R:U -> A496R:A: adjacent_5p } 0 11 {A496R:A -> A495R:U: adjacent_3p } 0 12 {A496R:A -> A497R:A: adjacent_5p downward } 0 13 {A497R:A -> A496R:A: adjacent_3p upward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 2 . 4 1 1 . 6 . 8 2 3 7 . 10 . 3 . . 11 . 12 4 5 9 . 13 . [GraphModel] [Vertices] 0 A495R:U 0 1 A496R:A 0 2 A437R:U 0 3 A438R:G 0 4 A439R:A 0 [Edges] 0 {A437R:U -> A438R:G: adjacent_5p upward } 0 1 {A438R:G -> A437R:U: adjacent_3p downward } 0 2 {A437R:U -> A496R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {A496R:A -> A437R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {A438R:G -> A439R:A: adjacent_5p } 0 5 {A439R:A -> A438R:G: adjacent_3p } 0 6 {A438R:G -> A495R:U: inward } 0 7 {A495R:U -> A438R:G: inward } 0 8 {A439R:A -> A495R:U: pairing antiparallel trans XXIV Hh/Ww } 0 9 {A495R:U -> A439R:A: pairing antiparallel trans XXIV Ww/Hh } 0 10 {A495R:U -> A496R:A: adjacent_5p } 0 11 {A496R:A -> A495R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . 7 9 1 11 . 3 . . 2 . 2 . 0 . 3 6 . 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 A510R:A 0 1 A511R:C 0 2 A540R:G 0 3 A541R:G 0 4 A542R:G 0 [Edges] 0 {A510R:A -> A511R:C: adjacent_5p } 0 1 {A511R:C -> A510R:A: adjacent_3p } 0 2 {A510R:A -> A542R:G: pairing antiparallel cis one_hbond Ss/Sw } 0 3 {A542R:G -> A510R:A: pairing antiparallel cis one_hbond Sw/Ss } 0 4 {A511R:C -> A540R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A540R:G -> A511R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A540R:G -> A541R:G: adjacent_5p upward } 0 7 {A541R:G -> A540R:G: adjacent_3p downward } 0 8 {A541R:G -> A542R:G: adjacent_5p upward } 0 9 {A542R:G -> A541R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 A552R:U 0 1 A553R:A 0 2 A30R:U 0 3 A31R:G 0 4 A32R:A 0 [Edges] 0 {A30R:U -> A31R:G: adjacent_5p } 0 1 {A31R:G -> A30R:U: adjacent_3p } 0 2 {A30R:U -> A553R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A553R:A -> A30R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A31R:G -> A32R:A: adjacent_5p } 0 5 {A32R:A -> A31R:G: adjacent_3p } 0 6 {A32R:A -> A552R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A552R:U -> A32R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A32R:A -> A553R:A: outward } 0 9 {A553R:A -> A32R:A: outward } 0 10 {A552R:U -> A553R:A: adjacent_5p upward } 0 11 {A553R:A -> A552R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 7 1 11 . 3 . 9 2 . 2 . 0 . 3 . . 1 . 4 4 6 8 . 5 . [GraphModel] [Vertices] 0 A644R:G 0 1 A645R:C 0 2 A594R:G 0 3 A595R:G 0 4 A596R:C 0 [Edges] 0 {A594R:G -> A595R:G: adjacent_5p upward } 0 1 {A595R:G -> A594R:G: adjacent_3p downward } 0 2 {A594R:G -> A645R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A645R:C -> A594R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A595R:G -> A596R:C: adjacent_5p } 0 5 {A596R:C -> A595R:G: adjacent_3p } 0 6 {A596R:C -> A644R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A644R:G -> A596R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A644R:G -> A645R:C: adjacent_5p upward } 0 9 {A645R:C -> A644R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 A657R:G 0 1 A658R:G 0 2 A747R:C 0 3 A748R:C 0 4 A749R:C 0 [Edges] 0 {A657R:G -> A658R:G: adjacent_5p upward } 0 1 {A658R:G -> A657R:G: adjacent_3p downward } 0 2 {A657R:G -> A749R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A749R:C -> A657R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A658R:G -> A747R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A747R:C -> A658R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A658R:G -> A749R:C: outward } 0 7 {A749R:C -> A658R:G: outward } 0 8 {A747R:C -> A748R:C: adjacent_5p upward } 0 9 {A748R:C -> A747R:C: adjacent_3p downward } 0 10 {A748R:C -> A749R:C: adjacent_5p pairing parallel cis one_hbond Bs/Hh } 0 11 {A749R:C -> A748R:C: adjacent_3p pairing parallel cis one_hbond Hh/Bs } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . 6 2 . 5 . 8 . 3 . . 9 . 10 4 3 7 . 11 . [GraphModel] [Vertices] 0 A740R:U 0 1 A741R:G 0 2 A664R:G 0 3 A665R:A 0 4 A666R:G 0 [Edges] 0 {A664R:G -> A665R:A: adjacent_5p } 0 1 {A665R:A -> A664R:G: adjacent_3p } 0 2 {A664R:G -> A741R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 3 {A741R:G -> A664R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 4 {A665R:A -> A666R:G: adjacent_5p } 0 5 {A666R:G -> A665R:A: adjacent_3p } 0 6 {A666R:G -> A740R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A740R:U -> A666R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A666R:G -> A741R:G: outward } 0 9 {A741R:G -> A666R:G: outward } 0 10 {A740R:U -> A741R:G: adjacent_5p } 0 11 {A741R:G -> A740R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 7 1 11 . 3 . 9 2 . 2 . 0 . 3 . . 1 . 4 4 6 8 . 5 . [GraphModel] [Vertices] 0 A752R:G 0 1 A753R:A 0 2 A652R:U 0 3 A653R:A 0 4 A654R:G 0 [Edges] 0 {A652R:U -> A653R:A: adjacent_5p } 0 1 {A653R:A -> A652R:U: adjacent_3p } 0 2 {A652R:U -> A752R:G: inward } 0 3 {A752R:G -> A652R:U: inward } 0 4 {A652R:U -> A753R:A: pairing antiparallel trans XXIV Ws/Hh } 0 5 {A753R:A -> A652R:U: pairing antiparallel trans XXIV Hh/Ws } 0 6 {A653R:A -> A654R:G: adjacent_5p } 0 7 {A654R:G -> A653R:A: adjacent_3p } 0 8 {A654R:G -> A752R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 9 {A752R:G -> A654R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 10 {A654R:G -> A753R:A: outward } 0 11 {A753R:A -> A654R:G: outward } 0 12 {A752R:G -> A753R:A: adjacent_5p } 0 13 {A753R:A -> A752R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 12 3 . 9 1 13 . 5 . 11 2 2 4 . 0 . 3 . . 1 . 6 4 8 10 . 7 . [GraphModel] [Vertices] 0 A785R:G 0 1 A786R:G 0 2 A695R:A 0 3 A696R:A 0 4 A697R:U 0 [Edges] 0 {A695R:A -> A696R:A: adjacent_5p upward } 0 1 {A696R:A -> A695R:A: adjacent_3p downward } 0 2 {A695R:A -> A786R:G: pairing antiparallel cis one_hbond 55 Ww/Sw } 0 3 {A786R:G -> A695R:A: pairing antiparallel cis one_hbond 55 Sw/Ww } 0 4 {A696R:A -> A697R:U: adjacent_5p upward } 0 5 {A697R:U -> A696R:A: adjacent_3p downward } 0 6 {A697R:U -> A785R:G: pairing antiparallel cis one_hbond Ss/Sw } 0 7 {A785R:G -> A697R:U: pairing antiparallel cis one_hbond Sw/Ss } 0 8 {A785R:G -> A786R:G: adjacent_5p upward } 0 9 {A786R:G -> A785R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 A826R:C 0 1 A827R:U 0 2 A872R:A 0 3 A873R:A 0 4 A874R:G 0 [Edges] 0 {A826R:C -> A827R:U: adjacent_5p upward } 0 1 {A827R:U -> A826R:C: adjacent_3p downward } 0 2 {A826R:C -> A874R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A874R:G -> A826R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A827R:U -> A872R:A: pairing parallel trans XXI Ws/Ww } 0 5 {A872R:A -> A827R:U: pairing parallel trans XXI Ww/Ws } 0 6 {A872R:A -> A873R:A: adjacent_5p } 0 7 {A873R:A -> A872R:A: adjacent_3p } 0 8 {A872R:A -> A874R:G: outward } 0 9 {A874R:G -> A872R:A: outward } 0 10 {A873R:A -> A874R:G: adjacent_5p } 0 11 {A874R:G -> A873R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A905R:U 0 1 A906R:G 0 2 A892R:A 0 3 A893R:C 0 4 A894R:G 0 [Edges] 0 {A892R:A -> A893R:C: adjacent_5p upward } 0 1 {A893R:C -> A892R:A: adjacent_3p downward } 0 2 {A892R:A -> A906R:G: pairing antiparallel trans XI Hh/Ss } 0 3 {A906R:G -> A892R:A: pairing antiparallel trans XI Ss/Hh } 0 4 {A893R:C -> A894R:G: adjacent_5p upward } 0 5 {A894R:G -> A893R:C: adjacent_3p downward } 0 6 {A894R:G -> A905R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A905R:U -> A894R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A905R:U -> A906R:G: adjacent_5p upward } 0 9 {A906R:G -> A905R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 A907R:A 0 1 A908R:A 0 2 A889R:A 0 3 A890R:G 0 4 A891R:U 0 [Edges] 0 {A889R:A -> A890R:G: adjacent_5p } 0 1 {A890R:G -> A889R:A: adjacent_3p } 0 2 {A889R:A -> A891R:U: outward } 0 3 {A891R:U -> A889R:A: outward } 0 4 {A889R:A -> A908R:A: pairing parallel trans II Hh/Hh } 0 5 {A908R:A -> A889R:A: pairing parallel trans II Hh/Hh } 0 6 {A890R:G -> A891R:U: adjacent_5p pairing parallel cis one_hbond 89 Ss/Hh } 0 7 {A891R:U -> A890R:G: adjacent_3p pairing parallel cis one_hbond 89 Hh/Ss } 0 8 {A891R:U -> A907R:A: pairing antiparallel trans XXIV Ww/Hh } 0 9 {A907R:A -> A891R:U: pairing antiparallel trans XXIV Hh/Ww } 0 10 {A907R:A -> A908R:A: adjacent_5p upward } 0 11 {A908R:A -> A907R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 A922R:G 0 1 A923R:A 0 2 A1393R:U 0 3 A1394R:A 0 4 A1395R:C 0 [Edges] 0 {A922R:G -> A923R:A: adjacent_5p upward } 0 1 {A923R:A -> A922R:G: adjacent_3p downward } 0 2 {A922R:G -> A1395R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1395R:C -> A922R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A923R:A -> A1393R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {A1393R:U -> A923R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {A1393R:U -> A1394R:A: adjacent_5p } 0 7 {A1394R:A -> A1393R:U: adjacent_3p } 0 8 {A1394R:A -> A1395R:C: adjacent_5p } 0 9 {A1395R:C -> A1394R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 A953R:G 0 1 A954R:G 0 2 A1226R:C 0 3 A1227R:A 0 4 A1228R:C 0 [Edges] 0 {A953R:G -> A954R:G: adjacent_5p upward } 0 1 {A954R:G -> A953R:G: adjacent_3p downward } 0 2 {A953R:G -> A1228R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1228R:C -> A953R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A954R:G -> A1226R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A1226R:C -> A954R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A1226R:C -> A1227R:A: adjacent_5p } 0 7 {A1227R:A -> A1226R:C: adjacent_3p } 0 8 {A1227R:A -> A1228R:C: adjacent_5p upward } 0 9 {A1228R:C -> A1227R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 A1028R:C 0 1 A1029R:C 0 2 A1032R:G 0 3 A1033R:G 0 4 A1034R:G 0 [Edges] 0 {A1028R:C -> A1029R:C: adjacent_5p upward } 0 1 {A1029R:C -> A1028R:C: adjacent_3p downward } 0 2 {A1028R:C -> A1032R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 3 {A1032R:G -> A1028R:C: pairing antiparallel cis one_hbond Ws/Ww } 0 4 {A1028R:C -> A1033R:G: pairing antiparallel trans one_hbond 122 Wh/Hw } 0 5 {A1033R:G -> A1028R:C: pairing antiparallel trans one_hbond 122 Hw/Wh } 0 6 {A1028R:C -> A1034R:G: pairing antiparallel cis one_hbond Hw/Hw } 0 7 {A1034R:G -> A1028R:C: pairing antiparallel cis one_hbond Hw/Hw } 0 8 {A1029R:C -> A1032R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 9 {A1032R:G -> A1029R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 10 {A1032R:G -> A1033R:G: adjacent_5p } 0 11 {A1033R:G -> A1032R:G: adjacent_3p } 0 12 {A1033R:G -> A1034R:G: adjacent_5p upward } 0 13 {A1034R:G -> A1033R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 2 4 6 1 1 . 8 . . 2 3 9 . 10 . 3 5 . 11 . 12 4 7 . . 13 . [GraphModel] [Vertices] 0 A1060R:C 0 1 A1061R:G 0 2 A1195R:C 0 3 A1196R:U 0 4 A1197R:G 0 [Edges] 0 {A1060R:C -> A1061R:G: adjacent_5p } 0 1 {A1061R:G -> A1060R:C: adjacent_3p } 0 2 {A1060R:C -> A1197R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A1197R:G -> A1060R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A1061R:G -> A1195R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A1195R:C -> A1061R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A1061R:G -> A1197R:G: outward } 0 7 {A1197R:G -> A1061R:G: outward } 0 8 {A1195R:C -> A1196R:U: adjacent_5p } 0 9 {A1196R:U -> A1195R:C: adjacent_3p } 0 10 {A1196R:U -> A1197R:G: adjacent_5p } 0 11 {A1197R:G -> A1196R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . 6 2 . 5 . 8 . 3 . . 9 . 10 4 3 7 . 11 . [GraphModel] [Vertices] 0 A1083R:U 0 1 A1084R:G 0 2 A1072R:G 0 3 A1073R:U 0 4 A1074R:G 0 [Edges] 0 {A1072R:G -> A1073R:U: adjacent_5p upward } 0 1 {A1073R:U -> A1072R:G: adjacent_3p downward } 0 2 {A1072R:G -> A1084R:G: pairing antiparallel trans one_hbond 112 Hw/Sw } 0 3 {A1084R:G -> A1072R:G: pairing antiparallel trans one_hbond 112 Sw/Hw } 0 4 {A1073R:U -> A1074R:G: adjacent_5p upward } 0 5 {A1074R:G -> A1073R:U: adjacent_3p downward } 0 6 {A1074R:G -> A1083R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A1083R:U -> A1074R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A1083R:U -> A1084R:G: adjacent_5p upward } 0 9 {A1084R:G -> A1083R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 A1127R:G 0 1 A1128R:C 0 2 A1143R:G 0 3 A1144R:G 0 4 A1145R:C 0 [Edges] 0 {A1127R:G -> A1128R:C: adjacent_5p } 0 1 {A1128R:C -> A1127R:G: adjacent_3p } 0 2 {A1127R:G -> A1145R:C: pairing antiparallel cis one_hbond Ww/Ss } 0 3 {A1145R:C -> A1127R:G: pairing antiparallel cis one_hbond Ss/Ww } 0 4 {A1128R:C -> A1143R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 5 {A1143R:G -> A1128R:C: pairing antiparallel cis one_hbond Ws/Ww } 0 6 {A1143R:G -> A1144R:G: adjacent_5p upward } 0 7 {A1144R:G -> A1143R:G: adjacent_3p downward } 0 8 {A1144R:G -> A1145R:C: adjacent_5p } 0 9 {A1145R:C -> A1144R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 A1208R:C 0 1 A1209R:C 0 2 A1048R:G 0 3 A1049R:U 0 4 A1050R:G 0 [Edges] 0 {A1048R:G -> A1049R:U: adjacent_5p } 0 1 {A1049R:U -> A1048R:G: adjacent_3p } 0 2 {A1048R:G -> A1050R:G: upward } 0 3 {A1050R:G -> A1048R:G: downward } 0 4 {A1048R:G -> A1209R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A1209R:C -> A1048R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A1049R:U -> A1050R:G: adjacent_5p } 0 7 {A1050R:G -> A1049R:U: adjacent_3p } 0 8 {A1050R:G -> A1208R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A1208R:C -> A1050R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A1208R:C -> A1209R:C: adjacent_5p upward } 0 11 {A1209R:C -> A1208R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 A1221R:G 0 1 A1222R:G 0 2 A982R:U 0 3 A983R:A 0 4 A984R:C 0 [Edges] 0 {A982R:U -> A983R:A: adjacent_5p } 0 1 {A983R:A -> A982R:U: adjacent_3p } 0 2 {A982R:U -> A1222R:G: pairing antiparallel trans one_hbond Ws/Ww } 0 3 {A1222R:G -> A982R:U: pairing antiparallel trans one_hbond Ww/Ws } 0 4 {A983R:A -> A984R:C: adjacent_5p } 0 5 {A984R:C -> A983R:A: adjacent_3p } 0 6 {A983R:A -> A1222R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 7 {A1222R:G -> A983R:A: pairing antiparallel cis one_hbond Ws/Ww } 0 8 {A984R:C -> A1221R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A1221R:G -> A984R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A1221R:G -> A1222R:G: adjacent_5p upward } 0 11 {A1222R:G -> A1221R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 A1222R:G 0 1 A1223R:C 0 2 A981R:U 0 3 A982R:U 0 4 A983R:A 0 [Edges] 0 {A981R:U -> A982R:U: adjacent_5p inward } 0 1 {A982R:U -> A981R:U: adjacent_3p inward } 0 2 {A981R:U -> A1223R:C: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {A1223R:C -> A981R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A982R:U -> A983R:A: adjacent_5p } 0 5 {A983R:A -> A982R:U: adjacent_3p } 0 6 {A982R:U -> A1222R:G: pairing antiparallel trans one_hbond Ws/Ww } 0 7 {A1222R:G -> A982R:U: pairing antiparallel trans one_hbond Ww/Ws } 0 8 {A982R:U -> A1223R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 9 {A1223R:C -> A982R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 10 {A983R:A -> A1222R:G: pairing antiparallel cis one_hbond Ww/Ws } 0 11 {A1222R:G -> A983R:A: pairing antiparallel cis one_hbond Ws/Ww } 0 12 {A1222R:G -> A1223R:C: adjacent_5p upward } 0 13 {A1223R:C -> A1222R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 12 . 7 11 1 13 . 3 9 . 2 . 2 . 0 . 3 6 8 1 . 4 4 10 . . 5 . [GraphModel] [Vertices] 0 A1238R:A 0 1 A1239R:A 0 2 A1299R:A 0 3 A1300R:G 0 4 A1301R:U 0 [Edges] 0 {A1238R:A -> A1239R:A: adjacent_5p } 0 1 {A1239R:A -> A1238R:A: adjacent_3p } 0 2 {A1238R:A -> A1301R:U: pairing antiparallel trans XXIV Hh/Ws } 0 3 {A1301R:U -> A1238R:A: pairing antiparallel trans XXIV Ws/Hh } 0 4 {A1239R:A -> A1299R:A: pairing parallel trans one_hbond 35 Hh/Wh } 0 5 {A1299R:A -> A1239R:A: pairing parallel trans one_hbond 35 Wh/Hh } 0 6 {A1299R:A -> A1300R:G: adjacent_5p } 0 7 {A1300R:G -> A1299R:A: adjacent_3p } 0 8 {A1299R:A -> A1301R:U: outward } 0 9 {A1301R:U -> A1299R:A: outward } 0 10 {A1300R:G -> A1301R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 11 {A1301R:U -> A1300R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A1344R:C 0 1 A1345R:U 0 2 A937R:A 0 3 A938R:A 0 4 A939R:G 0 [Edges] 0 {A937R:A -> A938R:A: adjacent_5p upward } 0 1 {A938R:A -> A937R:A: adjacent_3p downward } 0 2 {A937R:A -> A1345R:U: pairing antiparallel cis one_hbond 48 Wh/Hw } 0 3 {A1345R:U -> A937R:A: pairing antiparallel cis one_hbond 48 Hw/Wh } 0 4 {A938R:A -> A939R:G: adjacent_5p upward } 0 5 {A939R:G -> A938R:A: adjacent_3p downward } 0 6 {A939R:G -> A1344R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A1344R:C -> A939R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A1344R:C -> A1345R:U: adjacent_5p } 0 9 {A1345R:U -> A1344R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 A1357R:A 0 1 A1358R:U 0 2 A1363R:A 0 3 A1364R:U 0 4 A1365R:G 0 [Edges] 0 {A1357R:A -> A1358R:U: adjacent_5p } 0 1 {A1358R:U -> A1357R:A: adjacent_3p } 0 2 {A1357R:A -> A1365R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {A1365R:G -> A1357R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A1358R:U -> A1363R:A: pairing parallel trans XXI Ww/Ww } 0 5 {A1363R:A -> A1358R:U: pairing parallel trans XXI Ww/Ww } 0 6 {A1363R:A -> A1364R:U: adjacent_5p } 0 7 {A1364R:U -> A1363R:A: adjacent_3p } 0 8 {A1363R:A -> A1365R:G: outward } 0 9 {A1365R:G -> A1363R:A: outward } 0 10 {A1364R:U -> A1365R:G: adjacent_5p } 0 11 {A1365R:G -> A1364R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A1374R:A 0 1 A1375R:A 0 2 A1346R:A 0 3 A1347R:G 0 4 A1348R:U 0 [Edges] 0 {A1346R:A -> A1347R:G: adjacent_5p } 0 1 {A1347R:G -> A1346R:A: adjacent_3p } 0 2 {A1346R:A -> A1348R:U: outward } 0 3 {A1348R:U -> A1346R:A: outward } 0 4 {A1346R:A -> A1375R:A: pairing parallel trans II Hh/Hh } 0 5 {A1375R:A -> A1346R:A: pairing parallel trans II Hh/Hh } 0 6 {A1347R:G -> A1348R:U: adjacent_5p } 0 7 {A1348R:U -> A1347R:G: adjacent_3p } 0 8 {A1348R:U -> A1374R:A: pairing antiparallel trans XXIV Ws/Hh } 0 9 {A1374R:A -> A1348R:U: pairing antiparallel trans XXIV Hh/Ws } 0 10 {A1374R:A -> A1375R:A: adjacent_5p upward } 0 11 {A1375R:A -> A1374R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 A1383R:C 0 1 A1384R:C 0 2 A933R:G 0 3 A934R:C 0 4 A935R:A 0 [Edges] 0 {A933R:G -> A934R:C: adjacent_5p } 0 1 {A934R:C -> A933R:G: adjacent_3p } 0 2 {A933R:G -> A935R:A: upward } 0 3 {A935R:A -> A933R:G: downward } 0 4 {A933R:G -> A1384R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A1384R:C -> A933R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A934R:C -> A935R:A: adjacent_5p } 0 7 {A935R:A -> A934R:C: adjacent_3p } 0 8 {A935R:A -> A1383R:C: pairing antiparallel cis one_hbond 74 Ss/Wh } 0 9 {A1383R:C -> A935R:A: pairing antiparallel cis one_hbond 74 Wh/Ss } 0 10 {A1383R:C -> A1384R:C: adjacent_5p upward } 0 11 {A1384R:C -> A1383R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 A1390R:U 0 1 A1391R:U 0 2 A925R:G 0 3 A926R:G 0 4 A927R:G 0 [Edges] 0 {A925R:G -> A926R:G: adjacent_5p } 0 1 {A926R:G -> A925R:G: adjacent_3p } 0 2 {A925R:G -> A927R:G: upward } 0 3 {A927R:G -> A925R:G: downward } 0 4 {A925R:G -> A1391R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 5 {A1391R:U -> A925R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 6 {A926R:G -> A927R:G: adjacent_5p } 0 7 {A927R:G -> A926R:G: adjacent_3p } 0 8 {A927R:G -> A1390R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 9 {A1390R:U -> A927R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 10 {A1390R:U -> A1391R:U: adjacent_5p upward } 0 11 {A1391R:U -> A1390R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 A1467R:G 0 1 A1468R:A 0 2 A1432R:G 0 3 A1433R:A 0 4 A1434R:A 0 [Edges] 0 {A1432R:G -> A1433R:A: adjacent_5p } 0 1 {A1433R:A -> A1432R:G: adjacent_3p } 0 2 {A1432R:G -> A1467R:G: inward } 0 3 {A1467R:G -> A1432R:G: inward } 0 4 {A1432R:G -> A1468R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {A1468R:A -> A1432R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {A1433R:A -> A1434R:A: adjacent_5p upward } 0 7 {A1434R:A -> A1433R:A: adjacent_3p downward } 0 8 {A1433R:A -> A1468R:A: outward } 0 9 {A1468R:A -> A1433R:A: outward } 0 10 {A1434R:A -> A1467R:G: pairing antiparallel trans XI Hh/Ss } 0 11 {A1467R:G -> A1434R:A: pairing antiparallel trans XI Ss/Hh } 0 12 {A1467R:G -> A1468R:A: adjacent_5p } 0 13 {A1468R:A -> A1467R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 12 3 . 11 1 13 . 5 9 . 2 2 4 . 0 . 3 . 8 1 . 6 4 10 . . 7 . MOLECULE: [GraphModel] [Vertices] 0 A22R:G 0 1 A23R:C 0 2 A5R:G 0 3 A6R:A 0 4 A7R:C 0 [Edges] 0 {A5R:G -> A6R:A: adjacent_5p } 0 1 {A6R:A -> A5R:G: adjacent_3p } 0 2 {A5R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A23R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A6R:A -> A7R:C: adjacent_5p upward } 0 5 {A7R:C -> A6R:A: adjacent_3p downward } 0 6 {A6R:A -> A23R:C: pairing antiparallel trans one_hbond Bh/Bs } 0 7 {A23R:C -> A6R:A: pairing antiparallel trans one_hbond Bs/Bh } 0 8 {A7R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {A22R:G -> A7R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {A22R:G -> A23R:C: adjacent_5p upward } 0 11 {A23R:C -> A22R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 A23R:C 0 1 A24R:U 0 2 A4R:A 0 3 A5R:G 0 4 A6R:A 0 [Edges] 0 {A4R:A -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:A: adjacent_3p downward } 0 2 {A4R:A -> A24R:U: pairing antiparallel cis XX Ww/Ww } 0 3 {A24R:U -> A4R:A: pairing antiparallel cis XX Ww/Ww } 0 4 {A5R:G -> A6R:A: adjacent_5p } 0 5 {A6R:A -> A5R:G: adjacent_3p } 0 6 {A5R:G -> A23R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A23R:C -> A5R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A6R:A -> A23R:C: pairing antiparallel trans one_hbond Bh/Bs } 0 9 {A23R:C -> A6R:A: pairing antiparallel trans one_hbond Bs/Bh } 0 10 {A23R:C -> A24R:U: adjacent_5p } 0 11 {A24R:U -> A23R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . 7 9 1 11 . 3 . . 2 . 2 . 0 . 3 6 . 1 . 4 4 8 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A21R:G 0 1 A22R:G 0 2 A6R:C 0 3 A7R:U 0 4 A8R:C 0 [Edges] 0 {A6R:C -> A7R:U: adjacent_5p } 0 1 {A7R:U -> A6R:C: adjacent_3p } 0 2 {A6R:C -> A22R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A22R:G -> A6R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:U -> A8R:C: adjacent_5p } 0 5 {A8R:C -> A7R:U: adjacent_3p } 0 6 {A8R:C -> A21R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {A21R:G -> A8R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {A21R:G -> A22R:G: adjacent_5p upward } 0 9 {A22R:G -> A21R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 X45R:A 0 1 X46R:G 0 2 X23R:A 0 3 X24R:A 0 4 X25R:U 0 [Edges] 0 {X23R:A -> X24R:A: adjacent_5p } 0 1 {X24R:A -> X23R:A: adjacent_3p } 0 2 {X23R:A -> X25R:U: outward } 0 3 {X25R:U -> X23R:A: outward } 0 4 {X23R:A -> X46R:G: pairing parallel trans X Ww/Ss } 0 5 {X46R:G -> X23R:A: pairing parallel trans X Ss/Ww } 0 6 {X24R:A -> X25R:U: adjacent_5p } 0 7 {X25R:U -> X24R:A: adjacent_3p } 0 8 {X25R:U -> X45R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {X45R:A -> X25R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {X45R:A -> X46R:G: adjacent_5p upward } 0 11 {X46R:G -> X45R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 X46R:G 0 1 X47R:U 0 2 X51R:U 0 3 X52R:A 0 4 X53R:C 0 [Edges] 0 {X46R:G -> X47R:U: adjacent_5p } 0 1 {X47R:U -> X46R:G: adjacent_3p } 0 2 {X46R:G -> X53R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {X53R:C -> X46R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {X47R:U -> X51R:U: pairing antiparallel trans one_hbond 81 Ww/Hw } 0 5 {X51R:U -> X47R:U: pairing antiparallel trans one_hbond 81 Hw/Ww } 0 6 {X51R:U -> X52R:A: adjacent_5p upward } 0 7 {X52R:A -> X51R:U: adjacent_3p downward } 0 8 {X52R:A -> X53R:C: adjacent_5p upward } 0 9 {X53R:C -> X52R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 X45R:A 0 1 X46R:G 0 2 X23R:A 0 3 X24R:A 0 4 X25R:U 0 [Edges] 0 {X23R:A -> X24R:A: adjacent_5p } 0 1 {X24R:A -> X23R:A: adjacent_3p } 0 2 {X23R:A -> X46R:G: pairing parallel trans X Ww/Ss } 0 3 {X46R:G -> X23R:A: pairing parallel trans X Ss/Ww } 0 4 {X24R:A -> X25R:U: adjacent_5p } 0 5 {X25R:U -> X24R:A: adjacent_3p } 0 6 {X25R:U -> X45R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {X45R:A -> X25R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {X45R:A -> X46R:G: adjacent_5p upward } 0 9 {X46R:G -> X45R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 X46R:G 0 1 X47R:U 0 2 X51R:U 0 3 X52R:A 0 4 X53R:C 0 [Edges] 0 {X46R:G -> X47R:U: adjacent_5p } 0 1 {X47R:U -> X46R:G: adjacent_3p } 0 2 {X46R:G -> X53R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {X53R:C -> X46R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {X47R:U -> X51R:U: pairing antiparallel trans one_hbond 81 Ww/Hw } 0 5 {X51R:U -> X47R:U: pairing antiparallel trans one_hbond 81 Hw/Ww } 0 6 {X51R:U -> X52R:A: adjacent_5p upward } 0 7 {X52R:A -> X51R:U: adjacent_3p downward } 0 8 {X52R:A -> X53R:C: adjacent_5p upward } 0 9 {X53R:C -> X52R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 C150R:C 0 1 C151R:U 0 2 C139R:G 0 3 C140R:U 0 4 C141R:G 0 [Edges] 0 {C139R:G -> C140R:U: adjacent_5p pairing parallel cis one_hbond 89 Sw/Hw } 0 1 {C140R:U -> C139R:G: adjacent_3p pairing parallel cis one_hbond 89 Hw/Sw } 0 2 {C139R:G -> C151R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 3 {C151R:U -> C139R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 4 {C140R:U -> C141R:G: adjacent_5p upward } 0 5 {C141R:G -> C140R:U: adjacent_3p downward } 0 6 {C140R:U -> C151R:U: pairing antiparallel cis XVI Ww/Ws } 0 7 {C151R:U -> C140R:U: pairing antiparallel cis XVI Ws/Ww } 0 8 {C141R:G -> C150R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {C150R:C -> C141R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {C150R:C -> C151R:U: adjacent_5p upward } 0 11 {C151R:U -> C150R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 C151R:U 0 1 C152R:C 0 2 C137R:G 0 3 C138R:A 0 4 C139R:G 0 [Edges] 0 {C137R:G -> C138R:A: adjacent_5p } 0 1 {C138R:A -> C137R:G: adjacent_3p } 0 2 {C137R:G -> C139R:G: upward } 0 3 {C139R:G -> C137R:G: downward } 0 4 {C137R:G -> C152R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {C152R:C -> C137R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {C138R:A -> C139R:G: adjacent_5p } 0 7 {C139R:G -> C138R:A: adjacent_3p } 0 8 {C139R:G -> C151R:U: pairing antiparallel cis one_hbond 94 Ws/Wh } 0 9 {C151R:U -> C139R:G: pairing antiparallel cis one_hbond 94 Wh/Ws } 0 10 {C151R:U -> C152R:C: adjacent_5p } 0 11 {C152R:C -> C151R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 A6R:U 0 1 A7R:A 0 2 A24R:G 0 3 A25R:U 0 4 A26R:A 0 [Edges] 0 {A6R:U -> A7R:A: adjacent_5p upward } 0 1 {A7R:A -> A6R:U: adjacent_3p downward } 0 2 {A6R:U -> A26R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A26R:A -> A6R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A7R:A -> A24R:G: pairing antiparallel cis VIII Ww/Ww } 0 5 {A24R:G -> A7R:A: pairing antiparallel cis VIII Ww/Ww } 0 6 {A7R:A -> A26R:A: outward } 0 7 {A26R:A -> A7R:A: outward } 0 8 {A24R:G -> A25R:U: adjacent_5p } 0 9 {A25R:U -> A24R:G: adjacent_3p } 0 10 {A25R:U -> A26R:A: adjacent_5p } 0 11 {A26R:A -> A25R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . 6 2 . 5 . 8 . 3 . . 9 . 10 4 3 7 . 11 . MOLECULE: [GraphModel] [Vertices] 0 A294R:C 0 1 A295R:A 0 2 A261R:U 0 3 A262R:C 0 4 A263R:G 0 [Edges] 0 {A261R:U -> A262R:C: adjacent_5p } 0 1 {A262R:C -> A261R:U: adjacent_3p } 0 2 {A261R:U -> A295R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A295R:A -> A261R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A262R:C -> A263R:G: adjacent_5p } 0 5 {A263R:G -> A262R:C: adjacent_3p } 0 6 {A263R:G -> A294R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A294R:C -> A263R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A263R:G -> A295R:A: outward } 0 9 {A295R:A -> A263R:G: outward } 0 10 {A294R:C -> A295R:A: adjacent_5p upward } 0 11 {A295R:A -> A294R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 7 1 11 . 3 . 9 2 . 2 . 0 . 3 . . 1 . 4 4 6 8 . 5 . MOLECULE: [GraphModel] [Vertices] 0 A141R:C 0 1 A142R:G 0 2 A236R:C 0 3 A237R:G 0 4 A238R:G 0 [Edges] 0 {A141R:C -> A142R:G: adjacent_5p upward } 0 1 {A142R:G -> A141R:C: adjacent_3p downward } 0 2 {A141R:C -> A237R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {A237R:G -> A141R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A141R:C -> A238R:G: pairing antiparallel cis one_hbond 127 Ss/Ws } 0 5 {A238R:G -> A141R:C: pairing antiparallel cis one_hbond 127 Ws/Ss } 0 6 {A142R:G -> A236R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {A236R:C -> A142R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {A142R:G -> A237R:G: outward } 0 9 {A237R:G -> A142R:G: outward } 0 10 {A236R:C -> A237R:G: adjacent_5p upward } 0 11 {A237R:G -> A236R:C: adjacent_3p downward } 0 12 {A237R:G -> A238R:G: adjacent_5p upward } 0 13 {A238R:G -> A237R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . 2 4 1 1 . 6 8 . 2 . 7 . 10 . 3 3 9 11 . 12 4 5 . . 13 . MOLECULE: [GraphModel] [Vertices] 0 R16R:C 0 1 R17R:C 0 2 R7R:G 0 3 R8R:A 0 4 R9R:G 0 [Edges] 0 {R7R:G -> R8R:A: adjacent_5p } 0 1 {R8R:A -> R7R:G: adjacent_3p } 0 2 {R7R:G -> R9R:G: upward } 0 3 {R9R:G -> R7R:G: downward } 0 4 {R7R:G -> R17R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {R17R:C -> R7R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {R8R:A -> R9R:G: adjacent_5p } 0 7 {R9R:G -> R8R:A: adjacent_3p } 0 8 {R9R:G -> R16R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {R16R:C -> R9R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {R9R:G -> R17R:C: outward } 0 11 {R17R:C -> R9R:G: outward } 0 12 {R16R:C -> R17R:C: adjacent_5p } 0 13 {R17R:C -> R16R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 12 . . 9 1 13 . 5 . 11 2 . 4 . 0 2 3 . . 1 . 6 4 8 10 3 7 . [GraphModel] [Vertices] 0 S16R:C 0 1 S17R:C 0 2 S7R:G 0 3 S8R:A 0 4 S9R:G 0 [Edges] 0 {S7R:G -> S8R:A: adjacent_5p } 0 1 {S8R:A -> S7R:G: adjacent_3p } 0 2 {S7R:G -> S9R:G: upward } 0 3 {S9R:G -> S7R:G: downward } 0 4 {S7R:G -> S17R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {S17R:C -> S7R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {S8R:A -> S9R:G: adjacent_5p } 0 7 {S9R:G -> S8R:A: adjacent_3p } 0 8 {S9R:G -> S16R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {S16R:C -> S9R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {S9R:G -> S17R:C: outward } 0 11 {S17R:C -> S9R:G: outward } 0 12 {S16R:C -> S17R:C: adjacent_5p } 0 13 {S17R:C -> S16R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 12 . . 9 1 13 . 5 . 11 2 . 4 . 0 2 3 . . 1 . 6 4 8 10 3 7 . MOLECULE: [GraphModel] [Vertices] 0 A4R:C 0 1 A5R:A 0 2 B9R:A 0 3 B10R:A 0 4 B11R:G 0 [Edges] 0 {A4R:C -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:C: adjacent_3p downward } 0 2 {A4R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B11R:G -> A4R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A5R:A -> B9R:A: pairing antiparallel trans 41 Ss/Hh } 0 5 {B9R:A -> A5R:A: pairing antiparallel trans 41 Hh/Ss } 0 6 {B9R:A -> B10R:A: adjacent_5p upward } 0 7 {B10R:A -> B9R:A: adjacent_3p downward } 0 8 {B10R:A -> B11R:G: adjacent_5p upward } 0 9 {B11R:G -> B10R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 C21R:G 0 1 C22R:A 0 2 D41R:U 0 3 D42R:U 0 4 D43R:A 0 [Edges] 0 {C21R:G -> C22R:A: adjacent_5p } 0 1 {C22R:A -> C21R:G: adjacent_3p } 0 2 {C21R:G -> D41R:U: inward } 0 3 {D41R:U -> C21R:G: inward } 0 4 {C21R:G -> D43R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {D43R:A -> C21R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {C22R:A -> D41R:U: pairing antiparallel trans XXIV Hh/Ws } 0 7 {D41R:U -> C22R:A: pairing antiparallel trans XXIV Ws/Hh } 0 8 {C22R:A -> D43R:A: outward } 0 9 {D43R:A -> C22R:A: outward } 0 10 {D41R:U -> D42R:U: adjacent_5p } 0 11 {D42R:U -> D41R:U: adjacent_3p } 0 12 {D42R:U -> D43R:A: adjacent_5p } 0 13 {D43R:A -> D42R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 2 . 4 1 1 . 6 . 8 2 3 7 . 10 . 3 . . 11 . 12 4 5 9 . 13 . [GraphModel] [Vertices] 0 D42R:U 0 1 D43R:A 0 2 C21R:G 0 3 C22R:A 0 4 C23R:A 0 [Edges] 0 {C21R:G -> C22R:A: adjacent_5p } 0 1 {C22R:A -> C21R:G: adjacent_3p } 0 2 {C21R:G -> D43R:A: pairing antiparallel trans XI Ss/Hh } 0 3 {D43R:A -> C21R:G: pairing antiparallel trans XI Hh/Ss } 0 4 {C22R:A -> C23R:A: adjacent_5p upward } 0 5 {C23R:A -> C22R:A: adjacent_3p downward } 0 6 {C22R:A -> D43R:A: outward } 0 7 {D43R:A -> C22R:A: outward } 0 8 {C23R:A -> D42R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 9 {D42R:U -> C23R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 10 {D42R:U -> D43R:A: adjacent_5p } 0 11 {D43R:A -> D42R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A6R:G 0 1 A7R:C 0 2 A11R:G 0 3 A12R:U 0 4 A13R:C 0 [Edges] 0 {A6R:G -> A7R:C: adjacent_5p upward } 0 1 {A7R:C -> A6R:G: adjacent_3p downward } 0 2 {A6R:G -> A13R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A13R:C -> A6R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A7R:C -> A11R:G: pairing antiparallel trans one_hbond 117 Wh/Hh } 0 5 {A11R:G -> A7R:C: pairing antiparallel trans one_hbond 117 Hh/Wh } 0 6 {A11R:G -> A12R:U: adjacent_5p } 0 7 {A12R:U -> A11R:G: adjacent_3p } 0 8 {A11R:G -> A13R:C: upward } 0 9 {A13R:C -> A11R:G: downward } 0 10 {A12R:U -> A13R:C: adjacent_5p } 0 11 {A13R:C -> A12R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A13R:C 0 1 A14R:C 0 2 A23R:A 0 3 A24R:A 0 4 A25R:A 0 [Edges] 0 {A13R:C -> A14R:C: adjacent_5p } 0 1 {A14R:C -> A13R:C: adjacent_3p } 0 2 {A13R:C -> A25R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 3 {A25R:A -> A13R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 4 {A14R:C -> A23R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 5 {A23R:A -> A14R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 6 {A23R:A -> A24R:A: adjacent_5p upward } 0 7 {A24R:A -> A23R:A: adjacent_3p downward } 0 8 {A24R:A -> A25R:A: adjacent_5p upward } 0 9 {A25R:A -> A24R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 A25R:A 0 1 A26R:C 0 2 A11R:G 0 3 A12R:U 0 4 A13R:C 0 [Edges] 0 {A11R:G -> A12R:U: adjacent_5p } 0 1 {A12R:U -> A11R:G: adjacent_3p } 0 2 {A11R:G -> A13R:C: upward } 0 3 {A13R:C -> A11R:G: downward } 0 4 {A11R:G -> A26R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {A26R:C -> A11R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {A12R:U -> A13R:C: adjacent_5p } 0 7 {A13R:C -> A12R:U: adjacent_3p } 0 8 {A13R:C -> A25R:A: pairing antiparallel cis one_hbond Ss/Wh } 0 9 {A25R:A -> A13R:C: pairing antiparallel cis one_hbond Wh/Ss } 0 10 {A25R:A -> A26R:C: adjacent_5p upward } 0 11 {A26R:C -> A25R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 '2'24R:U 0 1 '2'25R:C 0 2 '2'11R:G 0 3 '2'12R:U 0 4 '2'13R:A 0 [Edges] 0 {'2'11R:G -> '2'12R:U: adjacent_5p } 0 1 {'2'12R:U -> '2'11R:G: adjacent_3p } 0 2 {'2'11R:G -> '2'13R:A: upward } 0 3 {'2'13R:A -> '2'11R:G: downward } 0 4 {'2'11R:G -> '2'25R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'2'25R:C -> '2'11R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'2'12R:U -> '2'13R:A: adjacent_5p } 0 7 {'2'13R:A -> '2'12R:U: adjacent_3p } 0 8 {'2'13R:A -> '2'24R:U: pairing antiparallel cis XX Ww/Ww } 0 9 {'2'24R:U -> '2'13R:A: pairing antiparallel cis XX Ww/Ww } 0 10 {'2'24R:U -> '2'25R:C: adjacent_5p upward } 0 11 {'2'25R:C -> '2'24R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 '2'25R:C 0 1 '2'26R:C 0 2 '2'9R:G 0 3 '2'10R:U 0 4 '2'11R:G 0 [Edges] 0 {'2'9R:G -> '2'10R:U: adjacent_5p } 0 1 {'2'10R:U -> '2'9R:G: adjacent_3p } 0 2 {'2'9R:G -> '2'11R:G: upward } 0 3 {'2'11R:G -> '2'9R:G: downward } 0 4 {'2'9R:G -> '2'26R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {'2'26R:C -> '2'9R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {'2'10R:U -> '2'11R:G: adjacent_5p downward } 0 7 {'2'11R:G -> '2'10R:U: adjacent_3p upward } 0 8 {'2'11R:G -> '2'25R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {'2'25R:C -> '2'11R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {'2'25R:C -> '2'26R:C: adjacent_5p } 0 11 {'2'26R:C -> '2'25R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 A35R:C 0 1 A36R:U 0 2 A6R:A 0 3 A7R:U 0 4 A8R:G 0 [Edges] 0 {A6R:A -> A7R:U: adjacent_5p pairing antiparallel cis one_hbond Ss/Hh } 0 1 {A7R:U -> A6R:A: adjacent_3p pairing antiparallel cis one_hbond Hh/Ss } 0 2 {A6R:A -> A8R:G: upward } 0 3 {A8R:G -> A6R:A: downward } 0 4 {A6R:A -> A36R:U: pairing antiparallel trans XXIV Hh/Ws } 0 5 {A36R:U -> A6R:A: pairing antiparallel trans XXIV Ws/Hh } 0 6 {A7R:U -> A8R:G: adjacent_5p } 0 7 {A8R:G -> A7R:U: adjacent_3p } 0 8 {A8R:G -> A35R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A35R:C -> A8R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A35R:C -> A36R:U: adjacent_5p upward } 0 11 {A36R:U -> A35R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 B78R:C 0 1 B79R:U 0 2 B49R:A 0 3 B50R:U 0 4 B51R:G 0 [Edges] 0 {B49R:A -> B50R:U: adjacent_5p pairing antiparallel cis one_hbond Ss/Hh } 0 1 {B50R:U -> B49R:A: adjacent_3p pairing antiparallel cis one_hbond Hh/Ss } 0 2 {B49R:A -> B51R:G: upward } 0 3 {B51R:G -> B49R:A: downward } 0 4 {B49R:A -> B79R:U: pairing antiparallel trans XXIV Hh/Ws } 0 5 {B79R:U -> B49R:A: pairing antiparallel trans XXIV Ws/Hh } 0 6 {B50R:U -> B51R:G: adjacent_5p } 0 7 {B51R:G -> B50R:U: adjacent_3p } 0 8 {B51R:G -> B78R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B78R:C -> B51R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B78R:C -> B79R:U: adjacent_5p } 0 11 {B79R:U -> B78R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 A7R:A 0 1 A8R:A 0 2 A33R:A 0 3 A34R:A 0 4 A35R:A 0 [Edges] 0 {A7R:A -> A8R:A: adjacent_5p } 0 1 {A8R:A -> A7R:A: adjacent_3p } 0 2 {A7R:A -> A34R:A: inward } 0 3 {A34R:A -> A7R:A: inward } 0 4 {A7R:A -> A35R:A: pairing parallel trans one_hbond Bs/Ww } 0 5 {A35R:A -> A7R:A: pairing parallel trans one_hbond Ww/Bs } 0 6 {A8R:A -> A33R:A: pairing antiparallel trans one_hbond Ww/Hw } 0 7 {A33R:A -> A8R:A: pairing antiparallel trans one_hbond Hw/Ww } 0 8 {A33R:A -> A34R:A: adjacent_5p upward } 0 9 {A34R:A -> A33R:A: adjacent_3p downward } 0 10 {A34R:A -> A35R:A: adjacent_5p } 0 11 {A35R:A -> A34R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . 2 4 1 1 . 6 . . 2 . 7 . 8 . 3 3 . 9 . 10 4 5 . . 11 . [GraphModel] [Vertices] 0 A33R:A 0 1 A34R:A 0 2 A12R:G 0 3 A13R:U 0 4 A14R:U 0 [Edges] 0 {A12R:G -> A13R:U: adjacent_5p } 0 1 {A13R:U -> A12R:G: adjacent_3p } 0 2 {A12R:G -> A34R:A: pairing antiparallel cis one_hbond Wh/Bs } 0 3 {A34R:A -> A12R:G: pairing antiparallel cis one_hbond Bs/Wh } 0 4 {A13R:U -> A14R:U: adjacent_5p } 0 5 {A14R:U -> A13R:U: adjacent_3p } 0 6 {A14R:U -> A33R:A: pairing antiparallel cis one_hbond Ww/Ww } 0 7 {A33R:A -> A14R:U: pairing antiparallel cis one_hbond Ww/Ww } 0 8 {A33R:A -> A34R:A: adjacent_5p upward } 0 9 {A34R:A -> A33R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 B7R:U 0 1 B8R:C 0 2 B11R:G 0 3 B12R:C 0 4 B13R:A 0 [Edges] 0 {B7R:U -> B8R:C: adjacent_5p upward } 0 1 {B8R:C -> B7R:U: adjacent_3p downward } 0 2 {B7R:U -> B13R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {B13R:A -> B7R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {B8R:C -> B11R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {B11R:G -> B8R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {B11R:G -> B12R:C: adjacent_5p } 0 7 {B12R:C -> B11R:G: adjacent_3p } 0 8 {B11R:G -> B13R:A: upward } 0 9 {B13R:A -> B11R:G: downward } 0 10 {B12R:C -> B13R:A: adjacent_5p } 0 11 {B13R:A -> B12R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . MOLECULE: [GraphModel] [Vertices] 0 R14R:C 0 1 R15R:C 0 2 R5R:G 0 3 R6R:A 0 4 R7R:G 0 [Edges] 0 {R5R:G -> R6R:A: adjacent_5p } 0 1 {R6R:A -> R5R:G: adjacent_3p } 0 2 {R5R:G -> R7R:G: upward } 0 3 {R7R:G -> R5R:G: downward } 0 4 {R5R:G -> R15R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {R15R:C -> R5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {R6R:A -> R7R:G: adjacent_5p } 0 7 {R7R:G -> R6R:A: adjacent_3p } 0 8 {R7R:G -> R14R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {R14R:C -> R7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {R14R:C -> R15R:C: adjacent_5p } 0 11 {R15R:C -> R14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 S14R:C 0 1 S15R:C 0 2 S5R:G 0 3 S6R:A 0 4 S7R:G 0 [Edges] 0 {S5R:G -> S6R:A: adjacent_5p } 0 1 {S6R:A -> S5R:G: adjacent_3p } 0 2 {S5R:G -> S7R:G: upward } 0 3 {S7R:G -> S5R:G: downward } 0 4 {S5R:G -> S15R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {S15R:C -> S5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {S6R:A -> S7R:G: adjacent_5p } 0 7 {S7R:G -> S6R:A: adjacent_3p } 0 8 {S7R:G -> S14R:C: pairing antiparallel cis Ww/Ww } 0 9 {S14R:C -> S7R:G: pairing antiparallel cis Ww/Ww } 0 10 {S14R:C -> S15R:C: adjacent_5p } 0 11 {S15R:C -> S14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 S13R:G 0 1 S14R:A 0 2 S7R:G 0 3 S8R:U 0 4 S9R:C 0 [Edges] 0 {S7R:G -> S8R:U: adjacent_5p upward } 0 1 {S8R:U -> S7R:G: adjacent_3p downward } 0 2 {S7R:G -> S14R:A: pairing antiparallel cis one_hbond 67 Wh/Hw } 0 3 {S14R:A -> S7R:G: pairing antiparallel cis one_hbond 67 Hw/Wh } 0 4 {S8R:U -> S9R:C: adjacent_5p upward } 0 5 {S9R:C -> S8R:U: adjacent_3p downward } 0 6 {S8R:U -> S14R:A: pairing antiparallel cis XX Ww/Ww } 0 7 {S14R:A -> S8R:U: pairing antiparallel cis XX Ww/Ww } 0 8 {S9R:C -> S13R:G: pairing antiparallel cis XIX Ww/Ww } 0 9 {S13R:G -> S9R:C: pairing antiparallel cis XIX Ww/Ww } 0 10 {S13R:G -> S14R:A: adjacent_5p upward } 0 11 {S14R:A -> S13R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 B8R:U 0 1 B9R:G 0 2 B12R:G 0 3 B13R:G 0 4 B14R:A 0 [Edges] 0 {B8R:U -> B9R:G: adjacent_5p } 0 1 {B9R:G -> B8R:U: adjacent_3p } 0 2 {B8R:U -> B14R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {B14R:A -> B8R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {B9R:G -> B12R:G: pairing parallel cis VI Ww/Hh } 0 5 {B12R:G -> B9R:G: pairing parallel cis VI Hh/Ww } 0 6 {B12R:G -> B13R:G: adjacent_5p upward } 0 7 {B13R:G -> B12R:G: adjacent_3p downward } 0 8 {B13R:G -> B14R:A: adjacent_5p } 0 9 {B14R:A -> B13R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 B12R:G 0 1 B13R:G 0 2 B21R:G 0 3 B22R:A 0 4 B23R:C 0 [Edges] 0 {B12R:G -> B13R:G: adjacent_5p upward } 0 1 {B13R:G -> B12R:G: adjacent_3p downward } 0 2 {B12R:G -> B23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B23R:C -> B12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {B13R:G -> B21R:G: pairing antiparallel cis one_hbond Wh/Sw } 0 5 {B21R:G -> B13R:G: pairing antiparallel cis one_hbond Sw/Wh } 0 6 {B13R:G -> B22R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 7 {B22R:A -> B13R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 8 {B21R:G -> B22R:A: adjacent_5p } 0 9 {B22R:A -> B21R:G: adjacent_3p } 0 10 {B22R:A -> B23R:C: adjacent_5p upward } 0 11 {B23R:C -> B22R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 . 2 . 5 . 8 . 3 . 7 9 . 10 4 3 . . 11 . [GraphModel] [Vertices] 0 B13R:G 0 1 B14R:A 0 2 B20.AR:A 0 3 B21R:G 0 4 B22R:A 0 [Edges] 0 {B13R:G -> B14R:A: adjacent_5p } 0 1 {B14R:A -> B13R:G: adjacent_3p } 0 2 {B13R:G -> B21R:G: pairing antiparallel cis one_hbond Wh/Sw } 0 3 {B21R:G -> B13R:G: pairing antiparallel cis one_hbond Sw/Wh } 0 4 {B13R:G -> B22R:A: pairing antiparallel trans one_hbond Sw/Hh } 0 5 {B22R:A -> B13R:G: pairing antiparallel trans one_hbond Hh/Sw } 0 6 {B14R:A -> B20.AR:A: pairing antiparallel trans one_hbond 40 Wh/Ss } 0 7 {B20.AR:A -> B14R:A: pairing antiparallel trans one_hbond 40 Ss/Wh } 0 8 {B20.AR:A -> B21R:G: adjacent_5p upward } 0 9 {B21R:G -> B20.AR:A: adjacent_3p downward } 0 10 {B21R:G -> B22R:A: adjacent_5p } 0 11 {B22R:A -> B21R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . 2 4 1 1 . 6 . . 2 . 7 . 8 . 3 3 . 9 . 10 4 5 . . 11 . [GraphModel] [Vertices] 0 E8R:U 0 1 E9R:G 0 2 E12R:G 0 3 E13R:G 0 4 E14R:A 0 [Edges] 0 {E8R:U -> E9R:G: adjacent_5p } 0 1 {E9R:G -> E8R:U: adjacent_3p } 0 2 {E8R:U -> E14R:A: pairing antiparallel trans XXIV Ws/Hh } 0 3 {E14R:A -> E8R:U: pairing antiparallel trans XXIV Hh/Ws } 0 4 {E9R:G -> E12R:G: pairing parallel cis VI Ww/Hh } 0 5 {E12R:G -> E9R:G: pairing parallel cis VI Hh/Ww } 0 6 {E12R:G -> E13R:G: adjacent_5p upward } 0 7 {E13R:G -> E12R:G: adjacent_3p downward } 0 8 {E13R:G -> E14R:A: adjacent_5p } 0 9 {E14R:A -> E13R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 E12R:G 0 1 E13R:G 0 2 E21R:G 0 3 E22R:A 0 4 E23R:C 0 [Edges] 0 {E12R:G -> E13R:G: adjacent_5p upward } 0 1 {E13R:G -> E12R:G: adjacent_3p downward } 0 2 {E12R:G -> E23R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {E23R:C -> E12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {E13R:G -> E21R:G: pairing antiparallel cis one_hbond Wh/Sw } 0 5 {E21R:G -> E13R:G: pairing antiparallel cis one_hbond Sw/Wh } 0 6 {E13R:G -> E22R:A: pairing antiparallel trans XI Ss/Hh } 0 7 {E22R:A -> E13R:G: pairing antiparallel trans XI Hh/Ss } 0 8 {E21R:G -> E22R:A: adjacent_5p } 0 9 {E22R:A -> E21R:G: adjacent_3p } 0 10 {E22R:A -> E23R:C: adjacent_5p upward } 0 11 {E23R:C -> E22R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 . 2 . 5 . 8 . 3 . 7 9 . 10 4 3 . . 11 . [GraphModel] [Vertices] 0 E13R:G 0 1 E14R:A 0 2 E20.AR:A 0 3 E21R:G 0 4 E22R:A 0 [Edges] 0 {E13R:G -> E14R:A: adjacent_5p } 0 1 {E14R:A -> E13R:G: adjacent_3p } 0 2 {E13R:G -> E21R:G: pairing antiparallel cis one_hbond Wh/Sw } 0 3 {E21R:G -> E13R:G: pairing antiparallel cis one_hbond Sw/Wh } 0 4 {E13R:G -> E22R:A: pairing antiparallel trans XI Ss/Hh } 0 5 {E22R:A -> E13R:G: pairing antiparallel trans XI Hh/Ss } 0 6 {E14R:A -> E20.AR:A: pairing antiparallel trans one_hbond 40 Wh/Ss } 0 7 {E20.AR:A -> E14R:A: pairing antiparallel trans one_hbond 40 Ss/Wh } 0 8 {E20.AR:A -> E21R:G: adjacent_5p upward } 0 9 {E21R:G -> E20.AR:A: adjacent_3p downward } 0 10 {E21R:G -> E22R:A: adjacent_5p } 0 11 {E22R:A -> E21R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . 2 4 1 1 . 6 . . 2 . 7 . 8 . 3 3 . 9 . 10 4 5 . . 11 . MOLECULE: [GraphModel] [Vertices] 0 R14R:C 0 1 R15R:C 0 2 R5R:G 0 3 R6R:A 0 4 R7R:G 0 [Edges] 0 {R5R:G -> R6R:A: adjacent_5p } 0 1 {R6R:A -> R5R:G: adjacent_3p } 0 2 {R5R:G -> R7R:G: upward } 0 3 {R7R:G -> R5R:G: downward } 0 4 {R5R:G -> R15R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {R15R:C -> R5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {R6R:A -> R7R:G: adjacent_5p } 0 7 {R7R:G -> R6R:A: adjacent_3p } 0 8 {R7R:G -> R14R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {R14R:C -> R7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {R14R:C -> R15R:C: adjacent_5p } 0 11 {R15R:C -> R14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 S14R:C 0 1 S15R:C 0 2 S5R:G 0 3 S6R:A 0 4 S7R:G 0 [Edges] 0 {S5R:G -> S6R:A: adjacent_5p } 0 1 {S6R:A -> S5R:G: adjacent_3p } 0 2 {S5R:G -> S7R:G: upward } 0 3 {S7R:G -> S5R:G: downward } 0 4 {S5R:G -> S15R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {S15R:C -> S5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {S6R:A -> S7R:G: adjacent_5p } 0 7 {S7R:G -> S6R:A: adjacent_3p } 0 8 {S7R:G -> S14R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {S14R:C -> S7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {S14R:C -> S15R:C: adjacent_5p } 0 11 {S15R:C -> S14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 R14R:C 0 1 R15R:C 0 2 R5R:G 0 3 R6R:A 0 4 R7R:G 0 [Edges] 0 {R5R:G -> R6R:A: adjacent_5p } 0 1 {R6R:A -> R5R:G: adjacent_3p } 0 2 {R5R:G -> R7R:G: upward } 0 3 {R7R:G -> R5R:G: downward } 0 4 {R5R:G -> R15R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {R15R:C -> R5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {R6R:A -> R7R:G: adjacent_5p } 0 7 {R7R:G -> R6R:A: adjacent_3p } 0 8 {R7R:G -> R14R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {R14R:C -> R7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {R14R:C -> R15R:C: adjacent_5p } 0 11 {R15R:C -> R14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 S14R:C 0 1 S15R:C 0 2 S5R:G 0 3 S6R:A 0 4 S7R:G 0 [Edges] 0 {S5R:G -> S6R:A: adjacent_5p } 0 1 {S6R:A -> S5R:G: adjacent_3p } 0 2 {S5R:G -> S7R:G: upward } 0 3 {S7R:G -> S5R:G: downward } 0 4 {S5R:G -> S15R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {S15R:C -> S5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {S6R:A -> S7R:G: adjacent_5p } 0 7 {S7R:G -> S6R:A: adjacent_3p } 0 8 {S7R:G -> S14R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 9 {S14R:C -> S7R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 10 {S14R:C -> S15R:C: adjacent_5p } 0 11 {S15R:C -> S14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 R14R:C 0 1 R15R:C 0 2 R5R:G 0 3 R6R:A 0 4 R7R:G 0 [Edges] 0 {R5R:G -> R6R:A: adjacent_5p } 0 1 {R6R:A -> R5R:G: adjacent_3p } 0 2 {R5R:G -> R7R:G: upward } 0 3 {R7R:G -> R5R:G: downward } 0 4 {R5R:G -> R15R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {R15R:C -> R5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {R6R:A -> R7R:G: adjacent_5p } 0 7 {R7R:G -> R6R:A: adjacent_3p } 0 8 {R7R:G -> R14R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {R14R:C -> R7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {R14R:C -> R15R:C: adjacent_5p } 0 11 {R15R:C -> R14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 S14R:C 0 1 S15R:C 0 2 S5R:G 0 3 S6R:A 0 4 S7R:G 0 [Edges] 0 {S5R:G -> S6R:A: adjacent_5p } 0 1 {S6R:A -> S5R:G: adjacent_3p } 0 2 {S5R:G -> S7R:G: upward } 0 3 {S7R:G -> S5R:G: downward } 0 4 {S5R:G -> S15R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {S15R:C -> S5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {S6R:A -> S7R:G: adjacent_5p } 0 7 {S7R:G -> S6R:A: adjacent_3p } 0 8 {S7R:G -> S14R:C: pairing antiparallel cis one_hbond Ww/Ww } 0 9 {S14R:C -> S7R:G: pairing antiparallel cis one_hbond Ww/Ww } 0 10 {S14R:C -> S15R:C: adjacent_5p } 0 11 {S15R:C -> S14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 R14R:C 0 1 R15R:C 0 2 R5R:G 0 3 R6R:A 0 4 R7R:G 0 [Edges] 0 {R5R:G -> R6R:A: adjacent_5p } 0 1 {R6R:A -> R5R:G: adjacent_3p } 0 2 {R5R:G -> R7R:G: upward } 0 3 {R7R:G -> R5R:G: downward } 0 4 {R5R:G -> R15R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {R15R:C -> R5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {R6R:A -> R7R:G: adjacent_5p } 0 7 {R7R:G -> R6R:A: adjacent_3p } 0 8 {R7R:G -> R14R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {R14R:C -> R7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {R14R:C -> R15R:C: adjacent_5p } 0 11 {R15R:C -> R14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . [GraphModel] [Vertices] 0 S14R:C 0 1 S15R:C 0 2 S5R:G 0 3 S6R:A 0 4 S7R:G 0 [Edges] 0 {S5R:G -> S6R:A: adjacent_5p } 0 1 {S6R:A -> S5R:G: adjacent_3p } 0 2 {S5R:G -> S7R:G: upward } 0 3 {S7R:G -> S5R:G: downward } 0 4 {S5R:G -> S15R:C: pairing antiparallel cis XIX Ww/Ww } 0 5 {S15R:C -> S5R:G: pairing antiparallel cis XIX Ww/Ww } 0 6 {S6R:A -> S7R:G: adjacent_5p } 0 7 {S7R:G -> S6R:A: adjacent_3p } 0 8 {S7R:G -> S14R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {S14R:C -> S7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {S14R:C -> S15R:C: adjacent_5p } 0 11 {S15R:C -> S14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 C38R:A 0 1 C39R:G 0 2 C31R:U 0 3 C32R:C 0 4 C33R:U 0 [Edges] 0 {C31R:U -> C32R:C: adjacent_5p } 0 1 {C32R:C -> C31R:U: adjacent_3p } 0 2 {C31R:U -> C39R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 3 {C39R:G -> C31R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 4 {C32R:C -> C33R:U: adjacent_5p upward } 0 5 {C33R:U -> C32R:C: adjacent_3p downward } 0 6 {C33R:U -> C38R:A: pairing antiparallel cis one_hbond 46 Ws/Wh } 0 7 {C38R:A -> C33R:U: pairing antiparallel cis one_hbond 46 Wh/Ws } 0 8 {C38R:A -> C39R:G: adjacent_5p } 0 9 {C39R:G -> C38R:A: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A9R:G 0 1 A10R:G 0 2 B4R:U 0 3 B5R:C 0 4 B6R:G 0 [Edges] 0 {A9R:G -> A10R:G: adjacent_5p } 0 1 {A10R:G -> A9R:G: adjacent_3p } 0 2 {A9R:G -> B6R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 3 {B6R:G -> A9R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 4 {A10R:G -> B4R:U: pairing antiparallel trans one_hbond 91 Ww/Hw } 0 5 {B4R:U -> A10R:G: pairing antiparallel trans one_hbond 91 Hw/Ww } 0 6 {B4R:U -> B5R:C: adjacent_5p upward } 0 7 {B5R:C -> B4R:U: adjacent_3p downward } 0 8 {B5R:C -> B6R:G: adjacent_5p upward } 0 9 {B6R:G -> B5R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A12R:C 0 1 A13R:A 0 2 B5R:A 0 3 B6R:A 0 4 B7R:G 0 [Edges] 0 {A12R:C -> A13R:A: adjacent_5p upward } 0 1 {A13R:A -> A12R:C: adjacent_3p downward } 0 2 {A12R:C -> B7R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B7R:G -> A12R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:A -> B5R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 5 {B5R:A -> A13R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 6 {B5R:A -> B6R:A: adjacent_5p upward } 0 7 {B6R:A -> B5R:A: adjacent_3p downward } 0 8 {B6R:A -> B7R:G: adjacent_5p upward } 0 9 {B7R:G -> B6R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 B12R:C 0 1 B13R:A 0 2 A5R:A 0 3 A6R:A 0 4 A7R:G 0 [Edges] 0 {A5R:A -> A6R:A: adjacent_5p upward } 0 1 {A6R:A -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> B13R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 3 {B13R:A -> A5R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 4 {A6R:A -> A7R:G: adjacent_5p upward } 0 5 {A7R:G -> A6R:A: adjacent_3p downward } 0 6 {A7R:G -> B12R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B12R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B12R:C -> B13R:A: adjacent_5p } 0 9 {B13R:A -> B12R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A20R:C 0 1 A21R:A 0 2 B17R:G 0 3 B18R:U 0 4 B19R:G 0 [Edges] 0 {A20R:C -> A21R:A: adjacent_5p upward } 0 1 {A21R:A -> A20R:C: adjacent_3p downward } 0 2 {A20R:C -> B19R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B19R:G -> A20R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A21R:A -> B17R:G: pairing antiparallel cis one_hbond Wh/Wh } 0 5 {B17R:G -> A21R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 6 {A21R:A -> B18R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {B18R:U -> A21R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A21R:A -> B19R:G: outward } 0 9 {B19R:G -> A21R:A: outward } 0 10 {B17R:G -> B18R:U: adjacent_5p upward } 0 11 {B18R:U -> B17R:G: adjacent_3p downward } 0 12 {B18R:U -> B19R:G: adjacent_5p upward } 0 13 {B19R:G -> B18R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 8 2 . 5 . 10 . 3 . 7 11 . 12 4 3 9 . 13 . [GraphModel] [Vertices] 0 A22R:C 0 1 A23R:A 0 2 B15R:A 0 3 B16R:A 0 4 B17R:G 0 [Edges] 0 {A22R:C -> A23R:A: adjacent_5p upward } 0 1 {A23R:A -> A22R:C: adjacent_3p downward } 0 2 {A22R:C -> B17R:G: pairing antiparallel cis Ww/Ww } 0 3 {B17R:G -> A22R:C: pairing antiparallel cis Ww/Ww } 0 4 {A23R:A -> B15R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 5 {B15R:A -> A23R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 6 {B15R:A -> B16R:A: adjacent_5p upward } 0 7 {B16R:A -> B15R:A: adjacent_3p downward } 0 8 {B16R:A -> B17R:G: adjacent_5p upward } 0 9 {B17R:G -> B16R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 B22R:C 0 1 B23R:A 0 2 A15R:A 0 3 A16R:A 0 4 A17R:G 0 [Edges] 0 {A15R:A -> A16R:A: adjacent_5p upward } 0 1 {A16R:A -> A15R:A: adjacent_3p downward } 0 2 {A15R:A -> B23R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 3 {B23R:A -> A15R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 4 {A16R:A -> A17R:G: adjacent_5p upward } 0 5 {A17R:G -> A16R:A: adjacent_3p downward } 0 6 {A17R:G -> B22R:C: pairing antiparallel cis XIX Ww/Ww } 0 7 {B22R:C -> A17R:G: pairing antiparallel cis XIX Ww/Ww } 0 8 {B22R:C -> B23R:A: adjacent_5p upward } 0 9 {B23R:A -> B22R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:A 0 2 A18R:U 0 3 A19R:U 0 4 A20R:U 0 [Edges] 0 {A4R:G -> A5R:A: adjacent_5p upward } 0 1 {A5R:A -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> A20R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 3 {A20R:U -> A4R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 4 {A5R:A -> A18R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 5 {A18R:U -> A5R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 6 {A5R:A -> A19R:U: pairing antiparallel cis XX Ww/Ww } 0 7 {A19R:U -> A5R:A: pairing antiparallel cis XX Ww/Ww } 0 8 {A18R:U -> A19R:U: adjacent_5p upward } 0 9 {A19R:U -> A18R:U: adjacent_3p downward } 0 10 {A19R:U -> A20R:U: adjacent_5p upward } 0 11 {A20R:U -> A19R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 . 2 . 5 . 8 . 3 . 7 9 . 10 4 3 . . 11 . [GraphModel] [Vertices] 0 A9R:U 0 1 A10R:C 0 2 A13R:G 0 3 A14R:C 0 4 A15R:A 0 [Edges] 0 {A9R:U -> A10R:C: adjacent_5p upward } 0 1 {A10R:C -> A9R:U: adjacent_3p downward } 0 2 {A9R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A15R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A10R:C -> A13R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {A13R:G -> A10R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {A13R:G -> A14R:C: adjacent_5p } 0 7 {A14R:C -> A13R:G: adjacent_3p } 0 8 {A13R:G -> A15R:A: upward } 0 9 {A15R:A -> A13R:G: downward } 0 10 {A14R:C -> A15R:A: adjacent_5p } 0 11 {A15R:A -> A14R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 8 3 . . 7 . 10 4 3 . 9 11 . [GraphModel] [Vertices] 0 A17R:C 0 1 A18R:U 0 2 A5R:A 0 3 A6R:G 0 4 A7R:G 0 [Edges] 0 {A5R:A -> A6R:G: adjacent_5p upward } 0 1 {A6R:G -> A5R:A: adjacent_3p downward } 0 2 {A5R:A -> A18R:U: pairing antiparallel cis one_hbond Wh/Wh } 0 3 {A18R:U -> A5R:A: pairing antiparallel cis one_hbond Wh/Wh } 0 4 {A6R:G -> A7R:G: adjacent_5p upward } 0 5 {A7R:G -> A6R:G: adjacent_3p downward } 0 6 {A6R:G -> A18R:U: pairing antiparallel cis XXVIII Ww/Ws } 0 7 {A18R:U -> A6R:G: pairing antiparallel cis XXVIII Ws/Ww } 0 8 {A7R:G -> A17R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {A17R:C -> A7R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {A17R:C -> A18R:U: adjacent_5p upward } 0 11 {A18R:U -> A17R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 R23R:A 0 1 R24R:G 0 2 R10R:G 0 3 R11R:C 0 4 R12R:U 0 [Edges] 0 {R10R:G -> R11R:C: adjacent_5p upward } 0 1 {R11R:C -> R10R:G: adjacent_3p downward } 0 2 {R10R:G -> R24R:G: pairing antiparallel cis one_hbond Ww/Wh } 0 3 {R24R:G -> R10R:G: pairing antiparallel cis one_hbond Wh/Ww } 0 4 {R11R:C -> R12R:U: adjacent_5p upward } 0 5 {R12R:U -> R11R:C: adjacent_3p downward } 0 6 {R11R:C -> R24R:G: pairing antiparallel cis one_hbond Ws/Ws } 0 7 {R24R:G -> R11R:C: pairing antiparallel cis one_hbond Ws/Ws } 0 8 {R12R:U -> R23R:A: pairing antiparallel cis XX Ww/Ww } 0 9 {R23R:A -> R12R:U: pairing antiparallel cis XX Ww/Ww } 0 10 {R23R:A -> R24R:G: adjacent_5p upward } 0 11 {R24R:G -> R23R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 B32R:C 0 1 B33R:U 0 2 A15R:A 0 3 A16R:A 0 4 A17R:A 0 [Edges] 0 {A15R:A -> A16R:A: adjacent_5p } 0 1 {A16R:A -> A15R:A: adjacent_3p } 0 2 {A15R:A -> A17R:A: upward } 0 3 {A17R:A -> A15R:A: downward } 0 4 {A15R:A -> B33R:U: pairing antiparallel cis XX Ww/Ww } 0 5 {B33R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 6 {A16R:A -> A17R:A: adjacent_5p } 0 7 {A17R:A -> A16R:A: adjacent_3p } 0 8 {A17R:A -> B32R:C: pairing antiparallel cis one_hbond 74 Ss/Wh } 0 9 {B32R:C -> A17R:A: pairing antiparallel cis one_hbond 74 Wh/Ss } 0 10 {B32R:C -> B33R:U: adjacent_5p upward } 0 11 {B33R:U -> B32R:C: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 A14R:U 0 1 A15R:A 0 2 A9R:U 0 3 A10R:G 0 4 A11R:U 0 [Edges] 0 {A9R:U -> A10R:G: adjacent_5p } 0 1 {A10R:G -> A9R:U: adjacent_3p } 0 2 {A9R:U -> A15R:A: pairing antiparallel cis XX Ww/Ww } 0 3 {A15R:A -> A9R:U: pairing antiparallel cis XX Ww/Ww } 0 4 {A10R:G -> A11R:U: adjacent_5p } 0 5 {A11R:U -> A10R:G: adjacent_3p } 0 6 {A10R:G -> A15R:A: outward } 0 7 {A15R:A -> A10R:G: outward } 0 8 {A11R:U -> A14R:U: pairing antiparallel trans one_hbond Bs/Hh } 0 9 {A14R:U -> A11R:U: pairing antiparallel trans one_hbond Hh/Bs } 0 10 {A14R:U -> A15R:A: adjacent_5p } 0 11 {A15R:A -> A14R:U: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A3R:C 0 1 A4R:G 0 2 B66R:G 0 3 B67R:C 0 4 B68R:G 0 [Edges] 0 {A3R:C -> A4R:G: adjacent_5p } 0 1 {A4R:G -> A3R:C: adjacent_3p } 0 2 {A3R:C -> B68R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {B68R:G -> A3R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {A4R:G -> B66R:G: pairing antiparallel cis one_hbond 115 Wh/Ws } 0 5 {B66R:G -> A4R:G: pairing antiparallel cis one_hbond 115 Ws/Wh } 0 6 {A4R:G -> B67R:C: pairing antiparallel cis Ww/Ww } 0 7 {B67R:C -> A4R:G: pairing antiparallel cis Ww/Ww } 0 8 {B66R:G -> B67R:C: adjacent_5p } 0 9 {B67R:C -> B66R:G: adjacent_3p } 0 10 {B67R:C -> B68R:G: adjacent_5p } 0 11 {B68R:G -> B67R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 6 . 2 . 5 . 8 . 3 . 7 9 . 10 4 3 . . 11 . [GraphModel] [Vertices] 0 A4R:G 0 1 A5R:G 0 2 B64R:A 0 3 B65R:G 0 4 B66R:G 0 [Edges] 0 {A4R:G -> A5R:G: adjacent_5p upward } 0 1 {A5R:G -> A4R:G: adjacent_3p downward } 0 2 {A4R:G -> B66R:G: pairing antiparallel cis one_hbond 115 Wh/Ws } 0 3 {B66R:G -> A4R:G: pairing antiparallel cis one_hbond 115 Ws/Wh } 0 4 {A5R:G -> B64R:A: pairing antiparallel cis VIII Ww/Ww } 0 5 {B64R:A -> A5R:G: pairing antiparallel cis VIII Ww/Ww } 0 6 {B64R:A -> B65R:G: adjacent_5p } 0 7 {B65R:G -> B64R:A: adjacent_3p } 0 8 {B65R:G -> B66R:G: adjacent_5p } 0 9 {B66R:G -> B65R:G: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 A21R:A 0 1 A22R:C 0 2 B47R:G 0 3 B48R:A 0 4 B49R:A 0 [Edges] 0 {A21R:A -> A22R:C: adjacent_5p upward } 0 1 {A22R:C -> A21R:A: adjacent_3p downward } 0 2 {A21R:A -> B49R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 3 {B49R:A -> A21R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 4 {A22R:C -> B47R:G: pairing antiparallel cis XIX Ww/Ww } 0 5 {B47R:G -> A22R:C: pairing antiparallel cis XIX Ww/Ww } 0 6 {B47R:G -> B48R:A: adjacent_5p } 0 7 {B48R:A -> B47R:G: adjacent_3p } 0 8 {B48R:A -> B49R:A: adjacent_5p upward } 0 9 {B49R:A -> B48R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . [GraphModel] [Vertices] 0 B38R:C 0 1 B39R:G 0 2 A31R:G 0 3 A32R:C 0 4 A33R:G 0 [Edges] 0 {A31R:G -> A32R:C: adjacent_5p } 0 1 {A32R:C -> A31R:G: adjacent_3p } 0 2 {A31R:G -> B39R:G: pairing antiparallel cis one_hbond 115 Ws/Wh } 0 3 {B39R:G -> A31R:G: pairing antiparallel cis one_hbond 115 Wh/Ws } 0 4 {A32R:C -> A33R:G: adjacent_5p } 0 5 {A33R:G -> A32R:C: adjacent_3p } 0 6 {A32R:C -> B39R:G: pairing antiparallel cis Ww/Ww } 0 7 {B39R:G -> A32R:C: pairing antiparallel cis Ww/Ww } 0 8 {A33R:G -> B38R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {B38R:C -> A33R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {B38R:C -> B39R:G: adjacent_5p } 0 11 {B39R:G -> B38R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 3 7 . 2 . 2 . 0 . 3 . 6 1 . 4 4 8 . . 5 . [GraphModel] [Vertices] 0 B39R:G 0 1 B40R:G 0 2 A29R:A 0 3 A30R:G 0 4 A31R:G 0 [Edges] 0 {A29R:A -> A30R:G: adjacent_5p } 0 1 {A30R:G -> A29R:A: adjacent_3p } 0 2 {A29R:A -> B40R:G: pairing antiparallel cis VIII Ww/Ww } 0 3 {B40R:G -> A29R:A: pairing antiparallel cis VIII Ww/Ww } 0 4 {A30R:G -> A31R:G: adjacent_5p } 0 5 {A31R:G -> A30R:G: adjacent_3p } 0 6 {A31R:G -> B39R:G: pairing antiparallel cis one_hbond 115 Ws/Wh } 0 7 {B39R:G -> A31R:G: pairing antiparallel cis one_hbond 115 Wh/Ws } 0 8 {B39R:G -> B40R:G: adjacent_5p upward } 0 9 {B40R:G -> B39R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . [GraphModel] [Vertices] 0 B56R:A 0 1 B57R:C 0 2 A12R:G 0 3 A13R:A 0 4 A14R:A 0 [Edges] 0 {A12R:G -> A13R:A: adjacent_5p } 0 1 {A13R:A -> A12R:G: adjacent_3p } 0 2 {A12R:G -> B57R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {B57R:C -> A12R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A13R:A -> A14R:A: adjacent_5p upward } 0 5 {A14R:A -> A13R:A: adjacent_3p downward } 0 6 {A14R:A -> B56R:A: pairing antiparallel cis one_hbond 37 Ww/Wh } 0 7 {B56R:A -> A14R:A: pairing antiparallel cis one_hbond 37 Wh/Ww } 0 8 {B56R:A -> B57R:C: adjacent_5p upward } 0 9 {B57R:C -> B56R:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 A17R:G 0 1 A18R:U 0 2 A24R:A 0 3 A25R:U 0 4 A26R:C 0 [Edges] 0 {A17R:G -> A18R:U: adjacent_5p upward } 0 1 {A18R:U -> A17R:G: adjacent_3p downward } 0 2 {A17R:G -> A26R:C: pairing antiparallel cis one_hbond 125 Sw/Ww } 0 3 {A26R:C -> A17R:G: pairing antiparallel cis one_hbond 125 Ww/Sw } 0 4 {A18R:U -> A24R:A: pairing antiparallel trans one_hbond 45 Ss/Hw } 0 5 {A24R:A -> A18R:U: pairing antiparallel trans one_hbond 45 Hw/Ss } 0 6 {A24R:A -> A25R:U: adjacent_5p upward } 0 7 {A25R:U -> A24R:A: adjacent_3p downward } 0 8 {A25R:U -> A26R:C: adjacent_5p upward } 0 9 {A26R:C -> A25R:U: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 0 . . 2 1 1 . 4 . . 2 . 5 . 6 . 3 . . 7 . 8 4 3 . . 9 . MOLECULE: [GraphModel] [Vertices] 0 A89.AR:A 0 1 A90R:C 0 2 A86R:G 0 3 A87R:G 0 4 A88R:C 0 [Edges] 0 {A86R:G -> A87R:G: adjacent_5p upward } 0 1 {A87R:G -> A86R:G: adjacent_3p downward } 0 2 {A86R:G -> A90R:C: pairing antiparallel cis XIX Ww/Ww } 0 3 {A90R:C -> A86R:G: pairing antiparallel cis XIX Ww/Ww } 0 4 {A87R:G -> A88R:C: adjacent_5p } 0 5 {A88R:C -> A87R:G: adjacent_3p } 0 6 {A88R:C -> A89.AR:A: pairing parallel trans one_hbond Hh/Ww } 0 7 {A89.AR:A -> A88R:C: pairing parallel trans one_hbond Ww/Hh } 0 8 {A89.AR:A -> A90R:C: adjacent_5p upward } 0 9 {A90R:C -> A89.AR:A: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 8 . . 7 1 9 . 3 . . 2 . 2 . 0 . 3 . . 1 . 4 4 6 . . 5 . MOLECULE: [GraphModel] [Vertices] 0 R13R:C 0 1 R14R:A 0 2 R4R:G 0 3 R5R:A 0 4 R6R:G 0 [Edges] 0 {R4R:G -> R5R:A: adjacent_5p } 0 1 {R5R:A -> R4R:G: adjacent_3p } 0 2 {R4R:G -> R6R:G: upward } 0 3 {R6R:G -> R4R:G: downward } 0 4 {R4R:G -> R14R:A: pairing antiparallel cis VIII Ww/Ww } 0 5 {R14R:A -> R4R:G: pairing antiparallel cis VIII Ww/Ww } 0 6 {R5R:A -> R6R:G: adjacent_5p } 0 7 {R6R:G -> R5R:A: adjacent_3p } 0 8 {R6R:G -> R13R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {R13R:C -> R6R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {R6R:G -> R14R:A: outward } 0 11 {R14R:A -> R6R:G: outward } 0 12 {R13R:C -> R14R:A: adjacent_5p } 0 13 {R14R:A -> R13R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 12 . . 9 1 13 . 5 . 11 2 . 4 . 0 2 3 . . 1 . 6 4 8 10 3 7 . [GraphModel] [Vertices] 0 S13R:C 0 1 S14R:A 0 2 S4R:G 0 3 S5R:A 0 4 S6R:G 0 [Edges] 0 {S4R:G -> S5R:A: adjacent_5p } 0 1 {S5R:A -> S4R:G: adjacent_3p } 0 2 {S4R:G -> S6R:G: upward } 0 3 {S6R:G -> S4R:G: downward } 0 4 {S4R:G -> S14R:A: pairing antiparallel cis VIII Ww/Ww } 0 5 {S14R:A -> S4R:G: pairing antiparallel cis VIII Ww/Ww } 0 6 {S5R:A -> S6R:G: adjacent_5p } 0 7 {S6R:G -> S5R:A: adjacent_3p } 0 8 {S6R:G -> S13R:C: pairing antiparallel cis XIX Ww/Ww } 0 9 {S13R:C -> S6R:G: pairing antiparallel cis XIX Ww/Ww } 0 10 {S13R:C -> S14R:A: adjacent_5p } 0 11 {S14R:A -> S13R:C: adjacent_3p } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 9 1 11 . 5 . . 2 . 4 . 0 2 3 . . 1 . 6 4 8 . 3 7 . MOLECULE: [GraphModel] [Vertices] 0 R12R:G 0 1 R13R:G 0 2 R2R:C 0 3 R3R:A 0 4 R4R:C 0 [Edges] 0 {R2R:C -> R3R:A: adjacent_5p } 0 1 {R3R:A -> R2R:C: adjacent_3p } 0 2 {R2R:C -> R13R:G: pairing antiparallel cis XIX Ww/Ww } 0 3 {R13R:G -> R2R:C: pairing antiparallel cis XIX Ww/Ww } 0 4 {R3R:A -> R4R:C: adjacent_5p } 0 5 {R4R:C -> R3R:A: adjacent_3p } 0 6 {R4R:C -> R12R:G: pairing antiparallel cis XIX Ww/Ww } 0 7 {R12R:G -> R4R:C: pairing antiparallel cis XIX Ww/Ww } 0 8 {R4R:C -> R13R:G: outward } 0 9 {R13R:G -> R4R:C: outward } 0 10 {R12R:G -> R13R:G: adjacent_5p upward } 0 11 {R13R:G -> R12R:G: adjacent_3p downward } 0 [Adjacency matrix] 0 1 2 3 4 0 . 10 . . 7 1 11 . 3 . 9 2 . 2 . 0 . 3 . . 1 . 4 4 6 8 . 5 .